diff --git a/doc/html/_sources/user-manual.txt b/doc/html/_sources/user-manual.txt index 4fd2b4d2..7b704395 100644 --- a/doc/html/_sources/user-manual.txt +++ b/doc/html/_sources/user-manual.txt @@ -1486,8 +1486,49 @@ The block starts with the *FOURIER* keyword and may contain the following entrie .. _msr-fourier-block-phase: **phase** - The initial phase of the input data is given here in degrees. Optionally the phase parameter from the :ref:`FITPARAMETER block ` can be given, - *e.g.* par3, which would take the value of parameter number 3. + If a real Fourier shall be plotted, it is necessary to adopt the phases of the different detectors. The number of potentially provided phases can be either **one**, which means that this phase will be applied to *all* Fourier spectra, + or the number of phases have to correspond to the number of runs in the plot block. + + Currently there are three options: + + #. The phases for each run/detector are given explicitly, *i.e.* + + .. code-block:: bash + + phase val0 sep val1 sep ... sep valN + + where ``val0``, ``val1``, etc. are explicitly given phases (*i.e.* doubles), and ``sep`` is one of the following allowed separators: ``space``, ``,``, ``;``, or ``tab``. + For example + + .. code-block:: bash + + phase -3.2, 175.9 + + #. The phases for each run/detector are given as phase parameter from the :ref:`FITPARAMETER block `, *e.g.* par3, which would + take the value of parameter number 3. More explicitly + + .. code-block:: bash + + phase parX0 sep parX1 sep ... sep parXN + + where the same rules applies as for explicit phase values. An example could look like this + + .. code-block:: bash + + phase par7, par12, par17, par22, par27, par32, par37, par42, par47, par52, par57, par62, par67, par72, par77, par82 + + #. Often the phases in the parameter block follow a clear list structure. This allows to write the Fourier phase parameters in a more compact form + + .. code-block:: none + + phase par(X0, offset, #param) + + with ``X0`` the first phase parameter index, ``offset`` being the offset to the next phase parameter, and ``#param`` being the number of phase parameters to be used. + This means that the previous example can be compacted to + + .. code-block:: none + + phase par(7, 5, 16) .. index:: fourier-block-range_for_phase_correction .. _msr-fourier-block-range_for_phase_correction: @@ -1511,8 +1552,7 @@ Altogether, a possible FOURIER block might look like that: fourier_power 12 apodization NONE plot real_and_imag - phase 22.6 # par3 - range_for_phase_correction all + phase par5, par8 range 0.0 17.03 .. index:: msr-plot-block diff --git a/doc/html/acknowledgement.html b/doc/html/acknowledgement.html index c820d718..74b21a92 100644 --- a/doc/html/acknowledgement.html +++ b/doc/html/acknowledgement.html @@ -113,7 +113,7 @@ extremely competent way to deal with his projects as well as to deal with the ch
© Copyright 2018, Andreas Suter. - Last updated on Aug 23, 2018. + Last updated on Oct 15, 2018. Created using Sphinx 1.2.3.
diff --git a/doc/html/any2many.html b/doc/html/any2many.html index 020a38ea..b9d5dc88 100644 --- a/doc/html/any2many.html +++ b/doc/html/any2many.html @@ -107,7 +107,7 @@ For a detailed description see © Copyright 2018, Andreas Suter. - Last updated on Aug 23, 2018. + Last updated on Oct 15, 2018. Created using Sphinx 1.2.3. diff --git a/doc/html/bugtracking.html b/doc/html/bugtracking.html index fd6f2b1b..9dd1e50d 100644 --- a/doc/html/bugtracking.html +++ b/doc/html/bugtracking.html @@ -98,7 +98,7 @@ or send an e-mail to A. Suter at PSI.

© Copyright 2018, Andreas Suter. - Last updated on Aug 23, 2018. + Last updated on Oct 15, 2018. Created using Sphinx 1.2.3.
diff --git a/doc/html/cite.html b/doc/html/cite.html index d1359e1c..f3e6e87c 100644 --- a/doc/html/cite.html +++ b/doc/html/cite.html @@ -119,7 +119,7 @@
© Copyright 2018, Andreas Suter. - Last updated on Aug 23, 2018. + Last updated on Oct 15, 2018. Created using Sphinx 1.2.3.
diff --git a/doc/html/genindex.html b/doc/html/genindex.html index 702efcc2..1ed12d1a 100644 --- a/doc/html/genindex.html +++ b/doc/html/genindex.html @@ -987,7 +987,7 @@
© Copyright 2018, Andreas Suter. - Last updated on Aug 23, 2018. + Last updated on Oct 15, 2018. Created using Sphinx 1.2.3.
diff --git a/doc/html/index.html b/doc/html/index.html index 8cf5959f..2f57c436 100644 --- a/doc/html/index.html +++ b/doc/html/index.html @@ -185,7 +185,7 @@
© Copyright 2018, Andreas Suter. - Last updated on Aug 23, 2018. + Last updated on Oct 15, 2018. Created using Sphinx 1.2.3.
diff --git a/doc/html/msr2data.html b/doc/html/msr2data.html index 8ffa1dac..fb11525d 100644 --- a/doc/html/msr2data.html +++ b/doc/html/msr2data.html @@ -439,7 +439,7 @@ fit serves as template for the second and so on. The template field stays empty
© Copyright 2018, Andreas Suter. - Last updated on Aug 23, 2018. + Last updated on Oct 15, 2018. Created using Sphinx 1.2.3.
diff --git a/doc/html/mupp.html b/doc/html/mupp.html index cb9579e1..dcb675ab 100644 --- a/doc/html/mupp.html +++ b/doc/html/mupp.html @@ -257,7 +257,7 @@ SCRIPT COMMANDS:
© Copyright 2018, Andreas Suter. - Last updated on Aug 23, 2018. + Last updated on Oct 15, 2018. Created using Sphinx 1.2.3.
diff --git a/doc/html/musr-root.html b/doc/html/musr-root.html index d1547866..b6c3b9a9 100644 --- a/doc/html/musr-root.html +++ b/doc/html/musr-root.html @@ -928,7 +928,7 @@ the entry has been added. The last token,
© Copyright 2018, Andreas Suter. - Last updated on Aug 23, 2018. + Last updated on Oct 15, 2018. Created using Sphinx 1.2.3.
diff --git a/doc/html/musredit.html b/doc/html/musredit.html index fc7e6388..a09cebc2 100644 --- a/doc/html/musredit.html +++ b/doc/html/musredit.html @@ -555,7 +555,7 @@ the corresponding fit parameter value, except the phases where the step will be
© Copyright 2018, Andreas Suter. - Last updated on Aug 23, 2018. + Last updated on Oct 15, 2018. Created using Sphinx 1.2.3.
diff --git a/doc/html/objects.inv b/doc/html/objects.inv index 4ce8549a..9b822ea5 100644 Binary files a/doc/html/objects.inv and b/doc/html/objects.inv differ diff --git a/doc/html/search.html b/doc/html/search.html index 26f95593..13bf240a 100644 --- a/doc/html/search.html +++ b/doc/html/search.html @@ -94,7 +94,7 @@
© Copyright 2018, Andreas Suter. - Last updated on Aug 23, 2018. + Last updated on Oct 15, 2018. Created using Sphinx 1.2.3.
diff --git a/doc/html/searchindex.js b/doc/html/searchindex.js index 0259eea6..27c9ac4c 100644 --- a/doc/html/searchindex.js +++ b/doc/html/searchindex.js @@ -1 +1 @@ -Search.setIndex({filenames:["acknowledgement","any2many","bugtracking","cite","index","msr2data","mupp","musr-root","musredit","setup-dks","setup-standard","tutorial","user-libs","user-manual"],titles:["Acknowledgements","any2many - a Universal \u03bcSR-file-format converter","Bugtracking","How to Cite musrfit?","Welcome to the musrfit documentation!","msr2data - A Program for Automatically Processing Multiple musrfit msr Files","mupp - \u03bcSR Parameter Plotter","MusrRoot - an Extensible Open File Format for \u03bcSR","musredit: the GUI Based Interface to musrfit","Setting up musrfit / DKS: High Speed Fitting with GPU’s","Setting up musrfit on Different Platforms","Tutorial for musrfit","Documentation of user libs (user functions)","User 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\ No newline at end of file diff --git a/doc/html/setup-dks.html b/doc/html/setup-dks.html index 03859bcc..fcec2311 100644 --- a/doc/html/setup-dks.html +++ b/doc/html/setup-dks.html @@ -359,7 +359,7 @@ The only thing you need DKS
© Copyright 2018, Andreas Suter. - Last updated on Aug 23, 2018. + Last updated on Oct 15, 2018. Created using Sphinx 1.2.3.
diff --git a/doc/html/setup-standard.html b/doc/html/setup-standard.html index 6fa19e78..c9df2538 100644 --- a/doc/html/setup-standard.html +++ b/doc/html/setup-standard.html @@ -1486,7 +1486,7 @@ $ musrview test-histo-ROOT-NPP.msr
© Copyright 2018, Andreas Suter. - Last updated on Aug 23, 2018. + Last updated on Oct 15, 2018. Created using Sphinx 1.2.3.
diff --git a/doc/html/tutorial.html b/doc/html/tutorial.html index 0adb9796..9c39cb34 100644 --- a/doc/html/tutorial.html +++ b/doc/html/tutorial.html @@ -448,7 +448,7 @@ For a complete description please refer to the manuals of © Copyright 2018, Andreas Suter. - Last updated on Aug 23, 2018. + Last updated on Oct 15, 2018. Created using Sphinx 1.2.3. diff --git a/doc/html/user-libs.html b/doc/html/user-libs.html index c3975e98..8f159925 100644 --- a/doc/html/user-libs.html +++ b/doc/html/user-libs.html @@ -667,7 +667,7 @@ K(m)&=\int_0^{\pi/2}\frac{\mathrm d\varphi}{\sqrt{1-m^2\sin^2{\varphi}}},\en
© Copyright 2018, Andreas Suter. - Last updated on Aug 23, 2018. + Last updated on Oct 15, 2018. Created using Sphinx 1.2.3.
diff --git a/doc/html/user-manual.html b/doc/html/user-manual.html index a99d33d1..46938703 100644 --- a/doc/html/user-manual.html +++ b/doc/html/user-manual.html @@ -1552,8 +1552,42 @@ The argument may be one of the following:

phase
-
The initial phase of the input data is given here in degrees. Optionally the phase parameter from the FITPARAMETER block can be given, -e.g. par3, which would take the value of parameter number 3.
+

If a real Fourier shall be plotted, it is necessary to adopt the phases of the different detectors. The number of potentially provided phases can be either one, which means that this phase will be applied to all Fourier spectra, +or the number of phases have to correspond to the number of runs in the plot block.

+

Currently there are three options:

+
    +

  1. The phases for each run/detector are given explicitly, i.e.

    +
    phase val0 sep val1 sep ... sep valN
+
    +
    +

    where val0, val1, etc. are explicitly given phases (i.e. doubles), and sep is one of the following allowed separators: space, ,, ;, or tab. +For example

    +
    phase   -3.2, 175.9
+
    +
    +
    2. +

  2. The phases for each run/detector are given as phase parameter from the FITPARAMETER block, e.g. par3, which would +take the value of parameter number 3. More explicitly

    +
    phase parX0 sep parX1 sep ... sep parXN
+
    +
    +

    where the same rules applies as for explicit phase values. An example could look like this

    +
    phase par7, par12, par17, par22, par27, par32, par37, par42, par47, par52, par57, par62, par67, par72, par77, par82
+
    +
    +
    3. +

  3. Often the phases in the parameter block follow a clear list structure. This allows to write the Fourier phase parameters in a more compact form

    +
    phase par(X0, offset, #param)
+
    +
    +

    with X0 the first phase parameter index, offset being the offset to the next phase parameter, and #param being the number of phase parameters to be used. +This means that the previous example can be compacted to

    +
    phase par(7, 5, 16)
+
    +
    +
    4. +
+
range_for_phase_correction
@@ -1570,8 +1604,7 @@ units Mc/s fourier_power 12 apodization NONE plot real_and_imag -phase 22.6 # par3 -range_for_phase_correction all +phase par5, par8 range 0.0 17.03 @@ -2162,7 +2195,7 @@ In case this cannot be ensured, the parallelization can be disabled by ̵
© Copyright 2018, Andreas Suter. - Last updated on Aug 23, 2018. + Last updated on Oct 15, 2018. Created using Sphinx 1.2.3.