Updated the musrfit documentation concerning the changes in the doc/ directory
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Bastian M. Wojek
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6536835197
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68183eea63
@ -1,7 +1,7 @@
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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
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<html lang="en_US">
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<head>
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<link rel="stylesheet" href="../pub/System/HeadlinesPlugin/style.css" type="text/css" media="all" />
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@ -21,7 +21,7 @@
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<meta name="TEXT_MODIFY_SEARCH" content="Modify search" />
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<link rel="icon" href="../pub/Main/WebPreferences/favicon.ico" type="image/x-icon" /> <link rel="shortcut icon" href="../pub/Main/WebPreferences/favicon.ico" type="image/x-icon" />
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<link rel="alternate" href="https://intranet.psi.ch/wiki/bin/edit/MUSR/MusrFitSetup?t=1312204524" type="application/x-wiki" title="edit MusrFitSetup" />
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<meta name="description" content="MusrFitSetup" />
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<base /><!--[if IE]></base><![endif]-->
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@ -234,7 +234,7 @@ Even though there might exist binary packages for the <code>NeXus</code> library
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The <code>ROOT</code> system may or may not be part of the GNU/Linux distribution. If it is, it should be checked that the provided binaries are of a recent version and then these in principle can be installed using a package manager as described above. <br>
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In case the distribution provides no or only outdated binary packages there are the following possibilities: <ul>
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<li> Visit the <code>ROOT</code> <a href="http://root.cern.ch/drupal/content/downloading-root" target="_top">web page</a> and download the packed precompiled binary version matching best the GNU/Linux distribution. Then unpack the bundle to its final destination.
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</li> <li> If there is no precompiled binary version of <code>ROOT</code> available for your system or e.g. <code>ROOT</code> should be compiled with another version of <code>GCC</code> visit the <a href="http://root.cern.ch/drupal/content/downloading-root" target="_top">web page</a> and download the 'complete source tree for all systems'. Then unpack this source tree to its destination (e.g. /opt/root-system)<a name="FootNote1text"></a><span class="FootNoteTextLink" title="In case only a single user is working at the machine it might be considerable to change the ownership of the =ROOT= folder so that the user has easy write access to this directory: <!--�verbatim1672�-->"><a href="#FootNote1note" class="foswikiCurrentTopicLink">(1)</a></span>, configure<a name="FootNote2text"></a><span class="FootNoteTextLink" title=" When using =GCC= &#8805; 4.2 please make sure that the environment variables *USE_PARALLEL_MINUIT2* and *USE_OPENMP* are <em>not</em> set! Otherwise =MINUIT2= will be compiled with parallelization support and cannot be used together with =musrfit= afterwards since the =musrfit= code is <em>not</em> fully thread-safe! When compiled with =GCC= &#8805; 4.2 =musrfit= itself will parallelize the &chi;<sup>2</sup> calculation."><a href="#FootNote2note" class="foswikiCurrentTopicLink">(2)</a></span> it (here using the minimal set of options) and compile it as follows right below: <pre class="bash">
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</li> <li> If there is no precompiled binary version of <code>ROOT</code> available for your system or e.g. <code>ROOT</code> should be compiled with another version of <code>GCC</code> visit the <a href="http://root.cern.ch/drupal/content/downloading-root" target="_top">web page</a> and download the 'complete source tree for all systems'. Then unpack this source tree to its destination (e.g. /opt/root-system)<a name="FootNote1text"></a><span class="FootNoteTextLink" title="In case only a single user is working at the machine it might be considerable to change the ownership of the =ROOT= folder so that the user has easy write access to this directory: <!--�verbatim3506�-->"><a href="#FootNote1note" class="foswikiCurrentTopicLink">(1)</a></span>, configure<a name="FootNote2text"></a><span class="FootNoteTextLink" title=" When using =GCC= &#8805; 4.2 please make sure that the environment variables *USE_PARALLEL_MINUIT2* and *USE_OPENMP* are <em>not</em> set! Otherwise =MINUIT2= will be compiled with parallelization support and cannot be used together with =musrfit= afterwards since the =musrfit= code is <em>not</em> fully thread-safe! When compiled with =GCC= &#8805; 4.2 =musrfit= itself will parallelize the &chi;<sup>2</sup> calculation."><a href="#FootNote2note" class="foswikiCurrentTopicLink">(2)</a></span> it (here using the minimal set of options) and compile it as follows right below: <pre class="bash">
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cd /opt/root-system
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./configure linux --gminimal --enable-asimage --enable-mathmore --enable-minuit2 --enable-xml
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(or in case of a 64 bit installation: ./configure linuxx8664gcc --gminimal --enable-asimage --enable-mathmore --enable-minuit2 --enable-xml)
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@ -323,10 +323,10 @@ If <code>Qt4.6</code> or higher is not available but <code>Qt3</code> is set up
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If there are problems during the <code>qmake</code> step, e.g. "uic: File generated with too old version of Qt Designer", this most probably means the <code>Qt4</code> version of qmake is being used. In order to use the <code>Qt3</code> version it should be enough to specify the full path to its location when calling it. Within the most GNU/Linux distributions this location will be something like /usr/lib/qt-3.3/bin/qmake.
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<p></p>
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<h2><a name="A_3.5_Check_of_the_installation"></a> 3.5 Check of the installation </h2>
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In order to perform a quick test for finding out if the installation has been completed successfully, a few msr files together with the corresponding data files can be found in the <code>musrfit</code> source tree at <strong>src/tests/CheckMusrfitInstall/</strong>.<br>
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In order to perform a quick test for finding out if the installation has been completed successfully, a few msr files together with the corresponding data files can be found in the <code>musrfit</code> source tree at <strong>doc/examples/</strong>.<br>
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If <code>musrgui</code> has been installed, just open one of the <strong>test-*.msr</strong> files in the editor and test the <code>musrfit</code> functionalities. Otherwise, if only the terminal should be used, as an initial test for instance the following could be done:
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<pre class="bash">
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cd src/tests/CheckMusrfitInstall
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cd doc/examples
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musrview test-histo-ROOT-NPP.msr
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</pre>
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<p></p>
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@ -500,10 +500,10 @@ musredit &
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If <code>Qt4.5</code> is not available but <code>Qt3</code> is set up <code>musrgui</code> can be installed. For this please follow the instructions for the <a href="#MusrGuiInstallLinux" class="foswikiCurrentTopicLink">musredit installation</a> where simply every <code>musredit</code> occurrence has to be replaced by <code>musrgui</code>, and <code>qt4</code> is replaced by <code>qt3</code>.
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<p></p>
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<h2><a name="A_4.5_Check_of_the_installation"></a> 4.5 Check of the installation </h2>
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In order to perform a quick test for finding out if the installation has been completed successfully, a few msr files together with the corresponding data files can be found in the <code>musrfit</code> source tree at <strong>src/tests/CheckMusrfitInstall/</strong>.<br>
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In order to perform a quick test for finding out if the installation has been completed successfully, a few msr files together with the corresponding data files can be found in the <code>musrfit</code> source tree at <strong>doc/examples/</strong>.<br>
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If <code>musrgui</code> has been installed, just open one of the <strong>test-*.msr</strong> files in the editor and test the <code>musrfit</code> functionalities. Otherwise, if only the terminal should be used, as an initial test for instance the following could be done:
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<pre class="bash">
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cd src/tests/CheckMusrfitInstall
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cd doc/examples
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musrview test-histo-ROOT-NPP.msr
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</pre>
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<p></p>
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@ -782,10 +782,10 @@ Notes
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<hr />
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<p></p>
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<h2><a name="A_5.6_Check_of_the_installation"></a> 5.6 Check of the installation </h2>
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In order to perform a quick test for finding out if the installation has been completed successfully, a few msr files together with the corresponding data files can be found in the <code>musrfit</code> source tree at <strong>src/tests/CheckMusrfitInstall/</strong>.<br>
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In order to perform a quick test for finding out if the installation has been completed successfully, a few msr files together with the corresponding data files can be found in the <code>musrfit</code> source tree at <strong>doc/examples/</strong>.<br>
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If <code>musrgui</code> has been installed, just open one of the <strong>test-*.msr</strong> files in the editor and test the <code>musrfit</code> functionalities. Otherwise, if only the terminal should be used, as an initial test for instance the following could be done:
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<pre class="bash">
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cd src/tests/CheckMusrfitInstall
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cd doc/examples
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musrview test-histo-ROOT-NPP.msr
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</pre>
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<p></p>
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@ -794,12 +794,12 @@ musrview test-histo-ROOT-NPP.msr
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</div><!-- /patternContent-->
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<hr />
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This topic: MUSR<span class='foswikiSeparator'> > </span><a href="WebHome.html" class="foswikiCurrentWebHomeLink">WebHome</a> > <a href="MusrFit.html">MusrFit</a><span class='foswikiSeparator'> > </span>MusrFitSetup <br />
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Topic revision: r46 - 11 Jul 2011 - 20:24:58 - <a href="https://intranet.psi.ch/Main/BastianWojek">BastianWojek</a>
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Topic revision: r47 - 07 Aug 2011 - 16:10:00 - <a href="https://intranet.psi.ch/Main/BastianWojek">BastianWojek</a>
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@ -810,11 +810,6 @@ Topic revision: r46 - 11 Jul 2011 - 20:24:58 - <a href="https://intranet.psi.ch/
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