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Updated the musrfit documentation concerning the changes in the doc/ directory

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Bastian M. Wojek 2011-08-07 15:11:06 +00:00
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doc/html/user/MUSR/MusrFitSetup.html
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@ -234,7 +234,7 @@ Even though there might exist binary packages for the <code>NeXus</code> library
The <code>ROOT</code> system may or may not be part of the GNU/Linux distribution. If it is, it should be checked that the provided binaries are of a recent version and then these in principle can be installed using a package manager as described above. <br>
In case the distribution provides no or only outdated binary packages there are the following possibilities: <ul>
<li> Visit the <code>ROOT</code> <a href="http://root.cern.ch/drupal/content/downloading-root" target="_top">web page</a> and download the packed precompiled binary version matching best the GNU/Linux distribution. Then unpack the bundle to its final destination.
</li> <li> If there is no precompiled binary version of <code>ROOT</code> available for your system or e.g. <code>ROOT</code> should be compiled with another version of <code>GCC</code> visit the <a href="http://root.cern.ch/drupal/content/downloading-root" target="_top">web page</a> and download the 'complete source tree for all systems'. Then unpack this source tree to its destination (e.g. /opt/root-system)<a name="FootNote1text"></a><span class="FootNoteTextLink" title="In case only a single user is working at the machine it might be considerable to change the ownership of the &#61;ROOT&#61; folder so that the user has easy write access to this directory&#58; &#60;&#33;&#45;&#45;&#0;verbatim1672&#0;&#45;&#45;&#62;"><a href="#FootNote1note" class="foswikiCurrentTopicLink">(1)</a></span>, configure<a name="FootNote2text"></a><span class="FootNoteTextLink" title=" When using &#61;GCC&#61; &#38;&#35;8805&#59; 4&#46;2 please make sure that the environment variables &#42;USE_PARALLEL_MINUIT2&#42; and &#42;USE_OPENMP&#42; are <em>not</em> set&#33; Otherwise &#61;MINUIT2&#61; will be compiled with parallelization support and cannot be used together with &#61;musrfit&#61; afterwards since the &#61;musrfit&#61; code is <em>not</em> fully thread&#45;safe&#33; When compiled with &#61;GCC&#61; &#38;&#35;8805&#59; 4&#46;2 &#61;musrfit&#61; itself will parallelize the &#38;chi&#59;&#60;sup&#62;2&#60;&#47;sup&#62; calculation&#46;"><a href="#FootNote2note" class="foswikiCurrentTopicLink">(2)</a></span> it (here using the minimal set of options) and compile it as follows right below: <pre class="bash">
</li> <li> If there is no precompiled binary version of <code>ROOT</code> available for your system or e.g. <code>ROOT</code> should be compiled with another version of <code>GCC</code> visit the <a href="http://root.cern.ch/drupal/content/downloading-root" target="_top">web page</a> and download the 'complete source tree for all systems'. Then unpack this source tree to its destination (e.g. /opt/root-system)<a name="FootNote1text"></a><span class="FootNoteTextLink" title="In case only a single user is working at the machine it might be considerable to change the ownership of the &#61;ROOT&#61; folder so that the user has easy write access to this directory&#58; &#60;&#33;&#45;&#45;&#0;verbatim3506&#0;&#45;&#45;&#62;"><a href="#FootNote1note" class="foswikiCurrentTopicLink">(1)</a></span>, configure<a name="FootNote2text"></a><span class="FootNoteTextLink" title=" When using &#61;GCC&#61; &#38;&#35;8805&#59; 4&#46;2 please make sure that the environment variables &#42;USE_PARALLEL_MINUIT2&#42; and &#42;USE_OPENMP&#42; are <em>not</em> set&#33; Otherwise &#61;MINUIT2&#61; will be compiled with parallelization support and cannot be used together with &#61;musrfit&#61; afterwards since the &#61;musrfit&#61; code is <em>not</em> fully thread&#45;safe&#33; When compiled with &#61;GCC&#61; &#38;&#35;8805&#59; 4&#46;2 &#61;musrfit&#61; itself will parallelize the &#38;chi&#59;&#60;sup&#62;2&#60;&#47;sup&#62; calculation&#46;"><a href="#FootNote2note" class="foswikiCurrentTopicLink">(2)</a></span> it (here using the minimal set of options) and compile it as follows right below: <pre class="bash">
cd /opt/root-system
./configure linux --gminimal --enable-asimage --enable-mathmore --enable-minuit2 --enable-xml
(or in case of a 64 bit installation: ./configure linuxx8664gcc --gminimal --enable-asimage --enable-mathmore --enable-minuit2 --enable-xml)
@ -323,10 +323,10 @@ If <code>Qt4.6</code> or higher is not available but <code>Qt3</code> is set up
If there are problems during the <code>qmake</code> step, e.g. "uic: File generated with too old version of Qt Designer", this most probably means the <code>Qt4</code> version of qmake is being used. In order to use the <code>Qt3</code> version it should be enough to specify the full path to its location when calling it. Within the most GNU/Linux distributions this location will be something like /usr/lib/qt-3.3/bin/qmake.
<p></p>
<h2><a name="A_3.5_Check_of_the_installation"></a> 3.5 Check of the installation </h2>
In order to perform a quick test for finding out if the installation has been completed successfully, a few msr files together with the corresponding data files can be found in the <code>musrfit</code> source tree at <strong>src/tests/CheckMusrfitInstall/</strong>.<br>
In order to perform a quick test for finding out if the installation has been completed successfully, a few msr files together with the corresponding data files can be found in the <code>musrfit</code> source tree at <strong>doc/examples/</strong>.<br>
If <code>musrgui</code> has been installed, just open one of the <strong>test-&#42;.msr</strong> files in the editor and test the <code>musrfit</code> functionalities. Otherwise, if only the terminal should be used, as an initial test for instance the following could be done:
<pre class="bash">
cd src/tests/CheckMusrfitInstall
cd doc/examples
musrview test-histo-ROOT-NPP.msr
</pre>
<p></p>
@ -500,10 +500,10 @@ musredit &#38;
If <code>Qt4.5</code> is not available but <code>Qt3</code> is set up <code>musrgui</code> can be installed. For this please follow the instructions for the <a href="#MusrGuiInstallLinux" class="foswikiCurrentTopicLink">musredit installation</a> where simply every <code>musredit</code> occurrence has to be replaced by <code>musrgui</code>, and <code>qt4</code> is replaced by <code>qt3</code>.
<p></p>
<h2><a name="A_4.5_Check_of_the_installation"></a> 4.5 Check of the installation </h2>
In order to perform a quick test for finding out if the installation has been completed successfully, a few msr files together with the corresponding data files can be found in the <code>musrfit</code> source tree at <strong>src/tests/CheckMusrfitInstall/</strong>.<br>
In order to perform a quick test for finding out if the installation has been completed successfully, a few msr files together with the corresponding data files can be found in the <code>musrfit</code> source tree at <strong>doc/examples/</strong>.<br>
If <code>musrgui</code> has been installed, just open one of the <strong>test-&#42;.msr</strong> files in the editor and test the <code>musrfit</code> functionalities. Otherwise, if only the terminal should be used, as an initial test for instance the following could be done:
<pre class="bash">
cd src/tests/CheckMusrfitInstall
cd doc/examples
musrview test-histo-ROOT-NPP.msr
</pre>
<p></p>
@ -782,10 +782,10 @@ Notes
<hr />
<p></p>
<h2><a name="A_5.6_Check_of_the_installation"></a> 5.6 Check of the installation </h2>
In order to perform a quick test for finding out if the installation has been completed successfully, a few msr files together with the corresponding data files can be found in the <code>musrfit</code> source tree at <strong>src/tests/CheckMusrfitInstall/</strong>.<br>
In order to perform a quick test for finding out if the installation has been completed successfully, a few msr files together with the corresponding data files can be found in the <code>musrfit</code> source tree at <strong>doc/examples/</strong>.<br>
If <code>musrgui</code> has been installed, just open one of the <strong>test-&#42;.msr</strong> files in the editor and test the <code>musrfit</code> functionalities. Otherwise, if only the terminal should be used, as an initial test for instance the following could be done:
<pre class="bash">
cd src/tests/CheckMusrfitInstall
cd doc/examples
musrview test-histo-ROOT-NPP.msr
</pre>
<p></p>
@ -794,12 +794,12 @@ musrview test-histo-ROOT-NPP.msr
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This topic: MUSR<span class='foswikiSeparator'>&nbsp;&gt;&nbsp;</span><a href="WebHome.html" class="foswikiCurrentWebHomeLink">WebHome</a> &gt; <a href="MusrFit.html">MusrFit</a><span class='foswikiSeparator'>&nbsp;&gt;&nbsp;</span>MusrFitSetup <br />
Topic revision: r46 - 11 Jul 2011 - 20:24:58 - <a href="https://intranet.psi.ch/Main/BastianWojek">BastianWojek</a>
Topic revision: r47 - 07 Aug 2011 - 16:10:00 - <a href="https://intranet.psi.ch/Main/BastianWojek">BastianWojek</a>
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@ -810,11 +810,6 @@ Topic revision: r46 - 11 Jul 2011 - 20:24:58 - <a href="https://intranet.psi.ch/
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