added the option to write the content of the MINUIT2.OUTPUT ascii file as yaml. This extends the previous commit from Ryan M.L. McFadden.

CMakeLists.txt

@@ -1,7 +1,7 @@
 # - musrfit
 cmake_minimum_required(VERSION 3.17)
 
-project(musrfit VERSION 1.9.4 LANGUAGES C CXX)
+project(musrfit VERSION 1.9.5 LANGUAGES C CXX)
 
 #--- musrfit specific options -------------------------------------------------
 option(nexus "build optional NeXus support. Needed for ISIS" OFF)

src/classes/PFitter.cpp

@@ -265,8 +265,8 @@ UInt_t PSectorChisq::GetNDF(UInt_t idx)
  * \param runListCollection pointer of the run list collection (pre-processed historgrams)
  * \param chisq_only flag: true=calculate chisq only (no fitting)
  */
-PFitter::PFitter(PMsrHandler *runInfo, PRunListCollection *runListCollection, Bool_t chisq_only) :
+PFitter::PFitter(PMsrHandler *runInfo, PRunListCollection *runListCollection, Bool_t chisq_only, Bool_t yaml_out) :
-  fChisqOnly(chisq_only), fRunInfo(runInfo), fRunListCollection(runListCollection)
+  fChisqOnly(chisq_only), fYamlOut(yaml_out), fRunInfo(runInfo), fRunListCollection(runListCollection)
 {
   // initialize variables
   fIsScanOnly = true;
@@ -2475,6 +2475,7 @@ Bool_t PFitter::ExecuteSave(Bool_t firstSave)
       hcorr->Write("hcorr", TObject::kOverwrite, sizeof(hcorr));
       ff.Close();
 
+      if (fYamlOut) {
         // write the fit results to an easy-to-read/parse yaml file
         // note: the block names follow those used by Python library iminuit
         // https://github.com/scikit-hep/iminuit
@@ -2588,7 +2589,7 @@ Bool_t PFitter::ExecuteSave(Bool_t firstSave)
 
         // close the yaml file
         yaml_file.close();
-
+      }
     }
     parNo.clear(); // clean up
   } else {

src/include/PFitter.h

@@ -111,7 +111,7 @@ class PSectorChisq
 class PFitter
 {
   public:
-    PFitter(PMsrHandler *runInfo, PRunListCollection *runListCollection, Bool_t chisq_only = false);
+    PFitter(PMsrHandler *runInfo, PRunListCollection *runListCollection, Bool_t chisq_only = false, Bool_t yaml_out = false);
     virtual ~PFitter();
 
     Bool_t IsValid() { return fIsValid; }
@@ -124,6 +124,7 @@ class PFitter
     Bool_t fIsScanOnly;  ///< flag. true: scan along some parameters (no fitting).
     Bool_t fConverged;   ///< flag. true: the fit has converged.
     Bool_t fChisqOnly;   ///< flag. true: calculate chi^2 only (no fitting).
+    Bool_t fYamlOut;     ///< flag. true: generate yaml output file of the fit results (MINUIT2.OUTPUT -> yaml)
     Bool_t fUseChi2;     ///< flag. true: chi^2 fit. false: log-max-likelihood
     UInt_t fPrintLevel;  ///< tag, showing the level of messages whished. 0=minimum, 1=standard, 2=maximum
 

src/msr2data.cpp

@@ -127,6 +127,7 @@ void msr2data_syntax()
   std::cout << std::endl << "       -k, --keep-mn2-output : if fitting is used, pass the option --keep-mn2-output to musrfit";
   std::cout << std::endl << "       -t, --title-from-data-file : if fitting is used, pass the option --title-from-data-file to musrfit";
   std::cout << std::endl << "       -e, --estimateN0: estimate N0 for single histogram fits.";
+  std::cout << std::endl << "       -y, --yaml:  write fit results (MINUIT2.OUTPUT) into a yaml-file. Output <msr-file>.yaml";
   std::cout << std::endl << "       -p, --per-run-block-chisq: will per run block chisq to the msr-file.";
   std::cout << std::endl;
   std::cout << std::endl << "       global : switch on the global-fit mode";
@@ -187,6 +188,7 @@ std::string msr2data_validArguments(const std::vector<std::string> &arg)
       || (!iter->substr(0,3).compare("fit")) || (!iter->compare("-k")) || (!iter->compare("--keep-mn2-output")) \
       || (!iter->compare("-t")) || (!iter->compare("--title-from-data-file")) \
       || (!iter->compare("-e")) || (!iter->compare("--estimateN0")) \
+      || (!iter->compare("-y") || (!iter->compare("--yaml"))) \
       || (!iter->compare("-p")) || (!iter->compare("--per-run-block-chisq")) \
       || (!iter->compare("data")) || (!iter->substr(0,4).compare("msr-")) || (!iter->compare("global")) \
       || (!iter->compare("global+")) || (!iter->compare("global+!")) || (!iter->compare("new")) \
@@ -716,6 +718,8 @@ int main(int argc, char *argv[])
       musrfitOptions.append("-t ");
     if (!msr2data_useOption(arg, "-e") || !msr2data_useOption(arg, "--estimateN0"))
       musrfitOptions.append("-e ");
+    if (!msr2data_useOption(arg, "-y") || !msr2data_useOption(arg, "--yaml"))
+      musrfitOptions.append("-y ");
     if (!msr2data_useOption(arg, "-p") || !msr2data_useOption(arg, "--per-run-block-chisq"))
       musrfitOptions.append("-p ");
   }

src/musredit_qt5/musredit/PAdmin.cpp

@@ -160,6 +160,8 @@ bool PAdminXMLParser::startElement()
     fKeyWord = eDumpRoot;
   } else if (qName == "estimate_n0") {
     fKeyWord = eEstimateN0;
+  } else if (qName == "yaml_out") {
+    fKeyWord = eYamlOut;
   } else if (qName == "chisq_per_run_block") {
     fKeyWord = eChisqPreRunBlock;
   } else if (qName == "path_file_name") {
@@ -389,6 +391,14 @@ bool PAdminXMLParser::characters()
       fAdmin->fMsr2DataParam.estimateN0 = flag;
       fAdmin->setEstimateN0Flag(flag);
       break;
+    case eYamlOut:
+      if (str == "y")
+        flag = true;
+      else
+        flag = false;
+      fAdmin->fMsr2DataParam.yamlOut = flag;
+      fAdmin->setYamlOutFlag(flag);
+      break;
     case eChisqPreRunBlock:
       if (str == "y")
         flag = true;
@@ -608,6 +618,7 @@ void PAdminXMLParser::dump()
   std::cout << "debug> title_from_data_file : " << fAdmin->getTitleFromDataFileFlag() << std::endl;
   std::cout << "debug> chisq_per_run_block : " << fAdmin->getChisqPerRunBlockFlag() << std::endl;
   std::cout << "debug> estimate_n0 : " << fAdmin->getEstimateN0Flag() << std::endl;
+  std::cout << "debug> yaml_out : " << fAdmin->getYamlOutFlag() << std::endl;
   std::cout << "debug> musrview_show_fourier : " << fAdmin->getMusrviewShowFourierFlag() << std::endl;
   std::cout << "debug> musrview_show_avg : " << fAdmin->getMusrviewShowAvgFlag() << std::endl;
   std::cout << "debug> enable_musrt0 : " << fAdmin->getEnableMusrT0Flag() << std::endl;
@@ -746,6 +757,7 @@ PAdmin::PAdmin() : QObject()
   fEnableMusrT0       = false;
   fLifetimeCorrection = true;
   fEstimateN0         = true;
+  fYamlOut            = false;
   fChisqPreRunBlock   = false;
 
   fEditWidth = 900;
@@ -760,6 +772,7 @@ PAdmin::PAdmin() : QObject()
   fMsr2DataParam.ignoreDataHeaderInfo = false;
   fMsr2DataParam.keepMinuit2Output = false;
   fMsr2DataParam.estimateN0 = fEstimateN0;
+  fMsr2DataParam.yamlOut = false;
   fMsr2DataParam.writeColumnData = false;
   fMsr2DataParam.recreateDbFile = false;
   fMsr2DataParam.chainFit = true;
@@ -991,6 +1004,12 @@ int PAdmin::savePrefs(QString pref_fln)
         else
           data[i] = "    <estimate_n0>n</estimate_n0>";
       }
+      if (data[i].contains("<yaml_out>") && data[i].contains("</yaml_out>")) {
+        if (fYamlOut)
+          data[i] = "    <yaml_out>y</yaml_out>";
+        else
+          data[i] = "    <yaml_out>n</yaml_out>";
+      }
       if (data[i].contains("<musrview_show_fourier>") && data[i].contains("</musrview_show_fourier>")) {
         if (fMusrviewShowFourier)
           data[i] = "    <musrview_show_fourier>y</musrview_show_fourier>";

src/musredit_qt5/musredit/PAdmin.h

@@ -71,7 +71,7 @@ class PAdminXMLParser
 
   private:
     enum EAdminKeyWords {eEmpty, eTimeout, eKeepMinuit2Output, eDumpAscii, eDumpRoot,
-                         eTitleFromDataFile, eChisqPreRunBlock, eEstimateN0,
+                         eTitleFromDataFile, eChisqPreRunBlock, eEstimateN0, eYamlOut,
                          eMusrviewShowFourier, eMusrviewShowAvg, eMusrviewShowOneToOne, eEnableMusrT0,
                          eDarkThemeIconsMenu, eDarkThemeIconsToolbar, eEditW, eEditH,
                          eFontName, eFontSize, eExecPath, eDefaultSavePath,
@@ -129,6 +129,7 @@ class PAdmin : public QObject
     bool    getDumpAsciiFlag() { return fDumpAscii; }
     bool    getDumpRootFlag() { return fDumpRoot; }
     bool    getEstimateN0Flag() { return fEstimateN0; }
+    bool    getYamlOutFlag() { return fYamlOut; }
     bool    getChisqPerRunBlockFlag() { return fChisqPreRunBlock; }
     bool    getDarkThemeIconsMenuFlag() { return fDarkThemeIconsMenu; }
     bool    getDarkThemeIconsToolbarFlag() { return fDarkThemeIconsToolbar; }
@@ -157,6 +158,7 @@ class PAdmin : public QObject
     void setDumpAsciiFlag(const bool flag) { fDumpAscii = flag; }
     void setDumpRootFlag(const bool flag) { fDumpRoot = flag; }
     void setEstimateN0Flag(const bool flag) { fEstimateN0 = flag; }
+    void setYamlOutFlag(const bool flag) { fYamlOut = flag; }
     void setChisqPerRunBlockFlag(const bool flag) { fChisqPreRunBlock = flag; }
     void setDarkThemeIconsMenuFlag(const bool flag) { fDarkThemeIconsMenu = flag; }
     void setDarkThemeIconsToolbarFlag(const bool flag) { fDarkThemeIconsToolbar = flag; }
@@ -205,6 +207,7 @@ class PAdmin : public QObject
     bool fTitleFromDataFile;    ///< flag indicating if the title should be extracted from the data file (default: yes).
     bool fChisqPreRunBlock;     ///< flag indicating if musrfit shall write 'per run block' chisq to the msr-file (default: no).
     bool fEstimateN0;           ///< flag indicating if musrfit shall estimate N0 for single histogram fits (default: yes).
+    bool fYamlOut;              ///< flag indicating if the MINUIT2.OUTPUT file should also be written as <msr-file>.yaml output. (default: no).
     bool fEnableMusrT0;         ///< flag indicating if musrT0 shall be enabled at startup from within musredit (default: yes).
     bool fDarkThemeIconsMenu;   ///< flag indicating if dark theme icons shall be used in the menu (default: no)
     bool fDarkThemeIconsToolbar; ///< flag indicating if dark theme icons shall be used in the toolbar (default: no)

src/musredit_qt5/musredit/PMsr2DataDialog.cpp

@@ -84,6 +84,7 @@ PMsr2DataDialog::PMsr2DataDialog(PMsr2DataParam *msr2DataParam, const QString he
   fIgnoreDataHeaderInfo_checkBox->setChecked(fMsr2DataParam->ignoreDataHeaderInfo);
   fKeepMinuit2Output_checkBox->setChecked(fMsr2DataParam->keepMinuit2Output);
   fEstimateN0_checkBox->setChecked(fMsr2DataParam->estimateN0);
+  fYamlOut_checkBox->setChecked(fMsr2DataParam->yamlOut);
   fWriteColumnData_checkBox->setChecked(fMsr2DataParam->writeColumnData);
   fRecreateDataFile_checkBox->setChecked(fMsr2DataParam->recreateDbFile);
   fChainFit_checkBox->setChecked(fMsr2DataParam->chainFit);
@@ -121,6 +122,7 @@ PMsr2DataParam* PMsr2DataDialog::getMsr2DataParam()
   fMsr2DataParam->ignoreDataHeaderInfo = fIgnoreDataHeaderInfo_checkBox->isChecked();
   fMsr2DataParam->keepMinuit2Output = fKeepMinuit2Output_checkBox->isChecked();
   fMsr2DataParam->estimateN0 = fEstimateN0_checkBox->isChecked();
+  fMsr2DataParam->yamlOut = fYamlOut_checkBox->isChecked();
   fMsr2DataParam->writeColumnData = fWriteColumnData_checkBox->isChecked();
   fMsr2DataParam->recreateDbFile = fRecreateDataFile_checkBox->isChecked();
   fMsr2DataParam->chainFit = fChainFit_checkBox->isChecked();

src/musredit_qt5/musredit/PPrefsDialog.cpp

@@ -76,6 +76,7 @@ PPrefsDialog::PPrefsDialog(PAdmin *admin) : fAdmin(admin)
   fEnableMusrT0_checkBox->setChecked(fAdmin->getEnableMusrT0Flag());
   fPerRunBlockChisq_checkBox->setChecked(fAdmin->getChisqPerRunBlockFlag());
   fEstimateN0_checkBox->setChecked(fAdmin->getEstimateN0Flag());
+  fYamlOut_checkBox->setChecked(fAdmin->getYamlOutFlag());
   fFourier_checkBox->setChecked(fAdmin->getMusrviewShowFourierFlag());
   fAvg_checkBox->setChecked(fAdmin->getMusrviewShowAvgFlag());
   fOneToOne_checkBox->setChecked(fAdmin->getMusrviewShowOneToOneFlag());

src/musredit_qt5/musredit/PPrefsDialog.h

@@ -54,6 +54,7 @@ class PPrefsDialog : public QDialog, private Ui::PPrefsDialog
     bool getEnableMusrT0Flag()      { return fEnableMusrT0_checkBox->isChecked(); }
     bool getKeepRunPerBlockChisqFlag() { return fPerRunBlockChisq_checkBox->isChecked(); }
     bool getEstimateN0Flag()        { return fEstimateN0_checkBox->isChecked(); }
+    bool getYamlOutFlag()           { return fYamlOut_checkBox->isChecked(); }
     bool getDarkThemeIconsMenuFlag()    { return fDarkThemeIconsMenu_checkBox->isChecked(); }
     bool getDarkThemeIconsToolbarFlag()    { return fDarkThemeIconsToolbar_checkBox->isChecked(); }
     bool getOneToOneFlag() { return fOneToOne_checkBox->isChecked(); }

src/musredit_qt5/musredit/PTextEdit.cpp

@@ -2104,6 +2104,11 @@ void PTextEdit::musrFit()
     cmd.append("--estimateN0");
   }
 
+  // check yamlOut flag
+  if (fAdmin->getYamlOutFlag()) {
+    cmd.append("--yaml");
+  }
+
   // check per-run-block-chisq flag
   if (fAdmin->getChisqPerRunBlockFlag()) {
     cmd.append("--per-run-block-chisq");
@@ -2336,6 +2341,11 @@ void PTextEdit::musrMsr2Data()
       cmd.append("-e");
     }
 
+    // yaml out. Add flag only if a fit is done
+    if (fMsr2DataParam->yamlOut && (fMsr2DataParam->fitOnly || fMsr2DataParam->templateRunNo != -1)) {
+      cmd.append("-y");
+    }
+
     // write per-run-block chisq. Add flag only if a fit is done
     if (fMsr2DataParam->perRunBlockChisq && (fMsr2DataParam->fitOnly || fMsr2DataParam->templateRunNo != -1)) {
       cmd.append("-p");
@@ -2719,6 +2729,7 @@ void PTextEdit::musrPrefs()
     fAdmin->setTimeout(dlg->getTimeout());
     fAdmin->setChisqPerRunBlockFlag(dlg->getKeepRunPerBlockChisqFlag());
     fAdmin->setEstimateN0Flag(dlg->getEstimateN0Flag());
+    fAdmin->setYamlOutFlag(dlg->getYamlOutFlag());
   }
 
   delete dlg;

src/musredit_qt5/musredit/forms/PMsr2DataDialog.ui

@@ -338,7 +338,7 @@
       <x>6</x>
       <y>20</y>
       <width>560</width>
-      <height>131</height>
+      <height>135</height>
      </rect>
     </property>
     <layout class="QHBoxLayout" name="horizontalLayout_9">
@@ -456,6 +456,13 @@
          </property>
         </widget>
        </item>
+       <item>
+        <widget class="QCheckBox" name="fYamlOut_checkBox">
+         <property name="text">
+          <string>yaml out</string>
+         </property>
+        </widget>
+       </item>
        <item>
         <layout class="QHBoxLayout" name="horizontalLayout_8">
          <item>

src/musredit_qt5/musredit/forms/PPrefsDialog.ui

@@ -33,7 +33,7 @@
     <item>
      <widget class="QTabWidget" name="fTabWidget">
       <property name="currentIndex">
-       <number>2</number>
+       <number>1</number>
       </property>
       <widget class="QWidget" name="fGeneral_tab">
        <attribute name="title">
@@ -152,9 +152,9 @@
        <widget class="QCheckBox" name="fTitleFromData_checkBox">
         <property name="geometry">
          <rect>
-          <x>190</x>
+          <x>170</x>
           <y>10</y>
-          <width>241</width>
+          <width>161</width>
           <height>23</height>
          </rect>
         </property>
@@ -165,9 +165,9 @@
        <widget class="QCheckBox" name="fPerRunBlockChisq_checkBox">
         <property name="geometry">
          <rect>
-          <x>190</x>
+          <x>170</x>
           <y>35</y>
-          <width>241</width>
+          <width>181</width>
           <height>22</height>
          </rect>
         </property>
@@ -178,9 +178,9 @@
        <widget class="QCheckBox" name="fEstimateN0_checkBox">
         <property name="geometry">
          <rect>
-          <x>190</x>
+          <x>170</x>
           <y>60</y>
-          <width>241</width>
+          <width>171</width>
           <height>22</height>
          </rect>
         </property>
@@ -188,6 +188,19 @@
          <string>estimate N0</string>
         </property>
        </widget>
+       <widget class="QCheckBox" name="fYamlOut_checkBox">
+        <property name="geometry">
+         <rect>
+          <x>350</x>
+          <y>10</y>
+          <width>85</width>
+          <height>21</height>
+         </rect>
+        </property>
+        <property name="text">
+         <string>yaml out</string>
+        </property>
+       </widget>
       </widget>
       <widget class="QWidget" name="fMusrview_tab">
        <attribute name="title">

src/musredit_qt5/musredit/musredit.h

@@ -56,6 +56,7 @@ struct PMsr2DataParam {
   bool openFilesAfterFitting;  ///< flag: true = open msr-file after fit in musredit. false = do not open msr-file after fit.
   bool titleFromDataFile;      ///< flag indicating if the title for the msr-file shall be extracted from the data-file ('-t' in msr2data)
   bool estimateN0;             ///< flag indicating if the N0 shall be estimated for single histogram fitting
+  bool yamlOut;                ///< flag indicating if the MINUIT2.OUTPUT content should be written to <msr-file>.yaml
   bool perRunBlockChisq;       ///< flag indicating if per-run-block-chisq shall be dumped into the msr-file
   bool createMsrFileOnly;      ///< flag: true = just create the msr-files without any fitting ('msr-<template>' in msr2data)
   bool fitOnly;                ///< flag: true = just perform the fits wihtout generating any msr-files ('fit' in msr2data).

src/musredit_qt5/musredit/musredit_startup.xml.in

@@ -14,6 +14,7 @@
     <title_from_data_file>y</title_from_data_file>
     <chisq_per_run_block>n</chisq_per_run_block>
     <estimate_n0>y</estimate_n0>
+    <yaml_out>n</yaml_out>
     <musrview_show_fourier>n</musrview_show_fourier>
     <musrview_show_avg>n</musrview_show_avg>
     <musrview_show_one_to_one>n</musrview_show_one_to_one>

src/musredit_qt6/musredit/PAdmin.cpp

@@ -166,6 +166,8 @@ bool PAdminXMLParser::startElement()
     fKeyWord = eDumpRoot;
   } else if (qName == "estimate_n0") {
     fKeyWord = eEstimateN0;
+  } else if (qName == "yaml_out") {
+    fKeyWord = eYamlOut;
   } else if (qName == "chisq_per_run_block") {
     fKeyWord = eChisqPreRunBlock;
   } else if (qName == "path_file_name") {
@@ -396,6 +398,13 @@ bool PAdminXMLParser::characters()
       fAdmin->fMsr2DataParam.estimateN0 = flag;
       fAdmin->setEstimateN0Flag(flag);
       break;
+    case eYamlOut:
+      if (str == "y")
+        flag = true;
+      else
+        flag = false;
+      fAdmin->fMsr2DataParam.yamlOut = flag;
+      fAdmin->setYamlOutFlag(flag);
     case eChisqPreRunBlock:
       if (str == "y")
         flag = true;
@@ -615,6 +624,7 @@ void PAdminXMLParser::dump()
   std::cout << "debug> title_from_data_file : " << fAdmin->getTitleFromDataFileFlag() << std::endl;
   std::cout << "debug> chisq_per_run_block : " << fAdmin->getChisqPerRunBlockFlag() << std::endl;
   std::cout << "debug> estimate_n0 : " << fAdmin->getEstimateN0Flag() << std::endl;
+  std::cout << "debug> yaml_out : " << fAdmin->getYamlOutFlag() << std::endl;
   std::cout << "debug> musrview_show_fourier : " << fAdmin->getMusrviewShowFourierFlag() << std::endl;
   std::cout << "debug> musrview_show_avg : " << fAdmin->getMusrviewShowAvgFlag() << std::endl;
   std::cout << "debug> enable_musrt0 : " << fAdmin->getEnableMusrT0Flag() << std::endl;
@@ -753,6 +763,7 @@ PAdmin::PAdmin() : QObject()
   fEnableMusrT0       = false;
   fLifetimeCorrection = true;
   fEstimateN0         = true;
+  fYamlOut            = false;
   fChisqPreRunBlock   = false;
 
   fMsr2DataParam.runList  = QString("");
@@ -764,6 +775,7 @@ PAdmin::PAdmin() : QObject()
   fMsr2DataParam.ignoreDataHeaderInfo = false;
   fMsr2DataParam.keepMinuit2Output = false;
   fMsr2DataParam.estimateN0 = fEstimateN0;
+  fMsr2DataParam.yamlOut = false;
   fMsr2DataParam.writeColumnData = false;
   fMsr2DataParam.recreateDbFile = false;
   fMsr2DataParam.chainFit = true;
@@ -995,6 +1007,12 @@ int PAdmin::savePrefs(QString pref_fln)
         else
           data[i] = "    <estimate_n0>n</estimate_n0>";
       }
+      if (data[i].contains("<yaml_out>") && data[i].contains("</yaml_out>")) {
+        if (fYamlOut)
+          data[i] = "    <yaml_out>y</yaml_out>";
+        else
+          data[i] = "    <yaml_out>n</yaml_out>";
+      }
       if (data[i].contains("<musrview_show_fourier>") && data[i].contains("</musrview_show_fourier>")) {
         if (fMusrviewShowFourier)
           data[i] = "    <musrview_show_fourier>y</musrview_show_fourier>";

src/musredit_qt6/musredit/PAdmin.h

@@ -71,7 +71,7 @@ class PAdminXMLParser
 
   private:
     enum EAdminKeyWords {eEmpty, eTimeout, eKeepMinuit2Output, eDumpAscii, eDumpRoot,
-                         eTitleFromDataFile, eChisqPreRunBlock, eEstimateN0,
+                         eTitleFromDataFile, eChisqPreRunBlock, eEstimateN0, eYamlOut,
                          eMusrviewShowFourier, eMusrviewShowAvg, eMusrviewShowOneToOne, eEnableMusrT0,
                          eDarkThemeIconsMenu, eDarkThemeIconsToolbar, eEditW, eEditH,
                          eFontName, eFontSize, eExecPath, eDefaultSavePath,
@@ -125,6 +125,7 @@ class PAdmin : public QObject
     bool    getMusrviewShowAvgFlag() { return fMusrviewShowAvg; }
     bool    getMusrviewShowOneToOneFlag() { return fMusrviewShowOneToOne; }
     bool    getEnableMusrT0Flag() { return fEnableMusrT0; }
+    bool    getYamlOutFlag() { return fYamlOut; }
     bool    getKeepMinuit2OutputFlag() { return fKeepMinuit2Output; }
     bool    getDumpAsciiFlag() { return fDumpAscii; }
     bool    getDumpRootFlag() { return fDumpRoot; }
@@ -157,6 +158,7 @@ class PAdmin : public QObject
     void setDumpAsciiFlag(const bool flag) { fDumpAscii = flag; }
     void setDumpRootFlag(const bool flag) { fDumpRoot = flag; }
     void setEstimateN0Flag(const bool flag) { fEstimateN0 = flag; }
+    void setYamlOutFlag(const bool flag) { fYamlOut = flag; }
     void setChisqPerRunBlockFlag(const bool flag) { fChisqPreRunBlock = flag; }
     void setDarkThemeIconsMenuFlag(const bool flag) { fDarkThemeIconsMenu = flag; }
     void setDarkThemeIconsToolbarFlag(const bool flag) { fDarkThemeIconsToolbar = flag; }
@@ -205,6 +207,7 @@ class PAdmin : public QObject
     bool fTitleFromDataFile;    ///< flag indicating if the title should be extracted from the data file (default: yes).
     bool fChisqPreRunBlock;     ///< flag indicating if musrfit shall write 'per run block' chisq to the msr-file (default: no).
     bool fEstimateN0;           ///< flag indicating if musrfit shall estimate N0 for single histogram fits (default: yes).
+    bool fYamlOut;              ///< flag indicating if the MINUIT2.OUTPUT file should also be written as <msr-file>.yaml output. (default: no).
     bool fEnableMusrT0;         ///< flag indicating if musrT0 shall be enabled at startup from within musredit (default: yes).
     bool fDarkThemeIconsMenu;   ///< flag indicating if dark theme icons shall be used in the menu (default: no)
     bool fDarkThemeIconsToolbar; ///< flag indicating if dark theme icons shall be used in the toolbar (default: no)

src/musredit_qt6/musredit/PMsr2DataDialog.cpp

@@ -84,6 +84,7 @@ PMsr2DataDialog::PMsr2DataDialog(PMsr2DataParam *msr2DataParam, const QString he
   fIgnoreDataHeaderInfo_checkBox->setChecked(fMsr2DataParam->ignoreDataHeaderInfo);
   fKeepMinuit2Output_checkBox->setChecked(fMsr2DataParam->keepMinuit2Output);
   fEstimateN0_checkBox->setChecked(fMsr2DataParam->estimateN0);
+  fYamlOut_checkBox->setChecked(fMsr2DataParam->yamlOut);
   fWriteColumnData_checkBox->setChecked(fMsr2DataParam->writeColumnData);
   fRecreateDataFile_checkBox->setChecked(fMsr2DataParam->recreateDbFile);
   fChainFit_checkBox->setChecked(fMsr2DataParam->chainFit);
@@ -121,6 +122,7 @@ PMsr2DataParam* PMsr2DataDialog::getMsr2DataParam()
   fMsr2DataParam->ignoreDataHeaderInfo = fIgnoreDataHeaderInfo_checkBox->isChecked();
   fMsr2DataParam->keepMinuit2Output = fKeepMinuit2Output_checkBox->isChecked();
   fMsr2DataParam->estimateN0 = fEstimateN0_checkBox->isChecked();
+  fMsr2DataParam->yamlOut = fYamlOut_checkBox->isChecked();
   fMsr2DataParam->writeColumnData = fWriteColumnData_checkBox->isChecked();
   fMsr2DataParam->recreateDbFile = fRecreateDataFile_checkBox->isChecked();
   fMsr2DataParam->chainFit = fChainFit_checkBox->isChecked();

src/musredit_qt6/musredit/PPrefsDialog.cpp

@@ -76,6 +76,7 @@ PPrefsDialog::PPrefsDialog(PAdmin *admin) : fAdmin(admin)
   fEnableMusrT0_checkBox->setChecked(fAdmin->getEnableMusrT0Flag());
   fPerRunBlockChisq_checkBox->setChecked(fAdmin->getChisqPerRunBlockFlag());
   fEstimateN0_checkBox->setChecked(fAdmin->getEstimateN0Flag());
+  fYamlOut_checkBox->setChecked(fAdmin->getYamlOutFlag());
   fFourier_checkBox->setChecked(fAdmin->getMusrviewShowFourierFlag());
   fAvg_checkBox->setChecked(fAdmin->getMusrviewShowAvgFlag());
   fOneToOne_checkBox->setChecked(fAdmin->getMusrviewShowOneToOneFlag());

src/musredit_qt6/musredit/PPrefsDialog.h

@@ -54,6 +54,7 @@ class PPrefsDialog : public QDialog, private Ui::PPrefsDialog
     bool getEnableMusrT0Flag()      { return fEnableMusrT0_checkBox->isChecked(); }
     bool getKeepRunPerBlockChisqFlag() { return fPerRunBlockChisq_checkBox->isChecked(); }
     bool getEstimateN0Flag()        { return fEstimateN0_checkBox->isChecked(); }
+    bool getYamlOutFlag()           { return fYamlOut_checkBox->isChecked(); }
     bool getDarkThemeIconsMenuFlag()    { return fDarkThemeIconsMenu_checkBox->isChecked(); }
     bool getDarkThemeIconsToolbarFlag()    { return fDarkThemeIconsToolbar_checkBox->isChecked(); }
     bool getOneToOneFlag() { return fOneToOne_checkBox->isChecked(); }

src/musredit_qt6/musredit/PTextEdit.cpp

@@ -2108,6 +2108,11 @@ void PTextEdit::musrFit()
     cmd.append("--estimateN0");
   }
 
+  // check yamlOut flag
+  if (fAdmin->getYamlOutFlag()) {
+    cmd.append("--yaml");
+  }
+
   // check per-run-block-chisq flag
   if (fAdmin->getChisqPerRunBlockFlag()) {
     cmd.append("--per-run-block-chisq");
@@ -2184,6 +2189,7 @@ void PTextEdit::musrMsr2Data()
   fMsr2DataParam->keepMinuit2Output = fAdmin->getKeepMinuit2OutputFlag();
   fMsr2DataParam->titleFromDataFile = fAdmin->getTitleFromDataFileFlag();
   fMsr2DataParam->estimateN0 = fAdmin->getEstimateN0Flag();
+  fMsr2DataParam->yamlOut = fAdmin->getYamlOutFlag();
   fMsr2DataParam->perRunBlockChisq = fAdmin->getChisqPerRunBlockFlag();
 
   PMsr2DataDialog *dlg = new PMsr2DataDialog(fMsr2DataParam, fAdmin->getHelpUrl("msr2data"));
@@ -2206,6 +2212,7 @@ void PTextEdit::musrMsr2Data()
     fAdmin->setKeepMinuit2OutputFlag(fMsr2DataParam->keepMinuit2Output);
     fAdmin->setTitleFromDataFileFlag(fMsr2DataParam->titleFromDataFile);
     fAdmin->setEstimateN0Flag(fMsr2DataParam->estimateN0);
+    fAdmin->setYamlOutFlag(fMsr2DataParam->yamlOut);
     fAdmin->setChisqPerRunBlockFlag(fMsr2DataParam->perRunBlockChisq);
 
     // analyze parameters
@@ -2336,6 +2343,11 @@ void PTextEdit::musrMsr2Data()
       cmd.append("-e");
     }
 
+    // yaml out. Add flag only if a fit is done
+    if (fMsr2DataParam->yamlOut && (fMsr2DataParam->fitOnly || fMsr2DataParam->templateRunNo != -1)) {
+      cmd.append("-y");
+    }
+
     // write per-run-block chisq. Add flag only if a fit is done
     if (fMsr2DataParam->perRunBlockChisq && (fMsr2DataParam->fitOnly || fMsr2DataParam->templateRunNo != -1)) {
       cmd.append("-p");
@@ -2713,6 +2725,7 @@ void PTextEdit::musrPrefs()
     fAdmin->setTimeout(dlg->getTimeout());
     fAdmin->setChisqPerRunBlockFlag(dlg->getKeepRunPerBlockChisqFlag());
     fAdmin->setEstimateN0Flag(dlg->getEstimateN0Flag());
+    fAdmin->setYamlOutFlag(dlg->getYamlOutFlag());
   }
 
   delete dlg;

src/musredit_qt6/musredit/forms/PMsr2DataDialog.ui

@@ -338,7 +338,7 @@
       <x>6</x>
       <y>20</y>
       <width>560</width>
-      <height>131</height>
+      <height>135</height>
      </rect>
     </property>
     <layout class="QHBoxLayout" name="horizontalLayout_9">
@@ -456,6 +456,13 @@
          </property>
         </widget>
        </item>
+       <item>
+        <widget class="QCheckBox" name="fYamlOut_checkBox">
+         <property name="text">
+          <string>yaml out</string>
+         </property>
+        </widget>
+       </item>
        <item>
         <layout class="QHBoxLayout" name="horizontalLayout_8">
          <item>

src/musredit_qt6/musredit/forms/PPrefsDialog.ui

@@ -33,7 +33,7 @@
     <item>
      <widget class="QTabWidget" name="fTabWidget">
       <property name="currentIndex">
-       <number>2</number>
+       <number>1</number>
       </property>
       <widget class="QWidget" name="fGeneral_tab">
        <attribute name="title">
@@ -152,9 +152,9 @@
        <widget class="QCheckBox" name="fTitleFromData_checkBox">
         <property name="geometry">
          <rect>
-          <x>190</x>
+          <x>170</x>
           <y>10</y>
-          <width>241</width>
+          <width>171</width>
           <height>23</height>
          </rect>
         </property>
@@ -165,7 +165,7 @@
        <widget class="QCheckBox" name="fPerRunBlockChisq_checkBox">
         <property name="geometry">
          <rect>
-          <x>190</x>
+          <x>170</x>
           <y>35</y>
           <width>241</width>
           <height>22</height>
@@ -178,9 +178,9 @@
        <widget class="QCheckBox" name="fEstimateN0_checkBox">
         <property name="geometry">
          <rect>
-          <x>190</x>
+          <x>170</x>
           <y>60</y>
-          <width>241</width>
+          <width>101</width>
           <height>22</height>
          </rect>
         </property>
@@ -188,6 +188,19 @@
          <string>estimate N0</string>
         </property>
        </widget>
+       <widget class="QCheckBox" name="fYamlOut_checkBox">
+        <property name="geometry">
+         <rect>
+          <x>360</x>
+          <y>10</y>
+          <width>85</width>
+          <height>21</height>
+         </rect>
+        </property>
+        <property name="text">
+         <string>yaml out</string>
+        </property>
+       </widget>
       </widget>
       <widget class="QWidget" name="fMusrview_tab">
        <attribute name="title">

src/musredit_qt6/musredit/musredit.h

@@ -56,6 +56,7 @@ struct PMsr2DataParam {
   bool openFilesAfterFitting;  ///< flag: true = open msr-file after fit in musredit. false = do not open msr-file after fit.
   bool titleFromDataFile;      ///< flag indicating if the title for the msr-file shall be extracted from the data-file ('-t' in msr2data)
   bool estimateN0;             ///< flag indicating if the N0 shall be estimated for single histogram fitting
+  bool yamlOut;                ///< flag indicating if the MINUIT2.OUTPUT content should be written to <msr-file>.yaml
   bool perRunBlockChisq;       ///< flag indicating if per-run-block-chisq shall be dumped into the msr-file
   bool createMsrFileOnly;      ///< flag: true = just create the msr-files without any fitting ('msr-<template>' in msr2data)
   bool fitOnly;                ///< flag: true = just perform the fits wihtout generating any msr-files ('fit' in msr2data).

src/musredit_qt6/musredit/musredit_startup.xml.in

@@ -14,6 +14,7 @@
     <title_from_data_file>y</title_from_data_file>
     <chisq_per_run_block>n</chisq_per_run_block>
     <estimate_n0>y</estimate_n0>
+    <yaml_out>n</yaml_out>
     <musrview_show_fourier>n</musrview_show_fourier>
     <musrview_show_avg>n</musrview_show_avg>
     <musrview_show_one_to_one>n</musrview_show_one_to_one>

src/musrfit.cpp

@@ -127,6 +127,7 @@ void musrfit_syntax()
   std::cout << std::endl << "                       (ii)  if present under $HOME/.musrfit/";
   std::cout << std::endl << "                       (iii) if present under $MUSRFITPATH/";
   std::cout << std::endl << "                       (iv)  if present under $ROOTSYS/";
+  std::cout << std::endl << "       -y, --yaml: write fit results (MINUIT2.OUTPUT) into a yaml-file. Output <msr-file>.yaml";
   std::cout << std::endl << "       --dump <type> is writing a data file with the fit data and the theory";
   std::cout << std::endl << "              <type> can be 'ascii', 'root'";
   std::cout << std::endl << "       --timeout <timeout_tag>: overwrites to predefined timeout of " << timeout << " (sec).";
@@ -446,6 +447,7 @@ int main(int argc, char *argv[])
   int  status;
   bool keep_mn2_output = false;
   bool chisq_only = false;
+  bool yaml_out = false;
   bool title_from_data_file = false;
   bool timeout_enabled = true;
   bool reset_startup_file = false;
@@ -532,6 +534,8 @@ int main(int argc, char *argv[])
       startup_options.estimateN0 = true;
     } else if (!strcmp(argv[i], "-p") || !strcmp(argv[i], "--per-run-block-chisq")) {
       startup_options.writeExpectedChisq = true;
+    } else if (!strcmp(argv[i], "-y") || !strcmp(argv[i], "--yaml")) {
+      yaml_out = true;
     } else if (!strcmp(argv[i], "-n") || !strcmp(argv[i], "--no-of-cores-avail")) {
 #ifdef HAVE_GOMP
         std::cout << std::endl;
@@ -724,7 +728,7 @@ int main(int argc, char *argv[])
   // do fitting
   std::unique_ptr<PFitter> fitter;
   if (success) {
-    fitter = std::make_unique<PFitter>(msrHandler.get(), runListCollection.get(), chisq_only);
+    fitter = std::make_unique<PFitter>(msrHandler.get(), runListCollection.get(), chisq_only, yaml_out);
     if (fitter->IsValid()) {
       fitter->DoFit();
       if (!fitter->IsScanOnly())