From c930298972d874aa565affdeaf2fd0d7dd1b4d2f Mon Sep 17 00:00:00 2001 From: Andreas Suter Date: Mon, 25 May 2020 16:21:16 +0200 Subject: [PATCH 1/2] allow alpha, beta in the RUN block being expressed via a function. --- CMakeLists.txt | 2 +- src/classes/PMsrHandler.cpp | 82 +++++++++--- src/classes/PRunAsymmetry.cpp | 208 ++++++++++++++++++++++++------ src/classes/PRunAsymmetryBNMR.cpp | 198 +++++++++++++++++++++------- src/classes/PRunAsymmetryRRF.cpp | 152 +++++++++++++++++----- 5 files changed, 499 insertions(+), 143 deletions(-) diff --git a/CMakeLists.txt b/CMakeLists.txt index aef7326a..3875fe16 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -5,7 +5,7 @@ if (CMAKE_VERSION GREATER_EQUAL 3.12) cmake_policy(SET CMP0075 NEW) endif (CMAKE_VERSION GREATER_EQUAL 3.12) -project(musrfit VERSION 1.6.0 LANGUAGES C CXX) +project(musrfit VERSION 1.6.1 LANGUAGES C CXX) #--- musrfit specific options ------------------------------------------------- option(nexus "build optional NeXus support. Needed for ISIS" OFF) diff --git a/src/classes/PMsrHandler.cpp b/src/classes/PMsrHandler.cpp index 5bedae20..fd4f70fb 100644 --- a/src/classes/PMsrHandler.cpp +++ b/src/classes/PMsrHandler.cpp @@ -819,15 +819,24 @@ Int_t PMsrHandler::WriteMsrLogFile(const Bool_t messages) } else if (sstr.BeginsWith("alpha ")) { fout.width(16); fout << std::left << "alpha"; - fout << fRuns[runNo].GetAlphaParamNo() << std::endl; + // check of alpha is given as a function + if (fRuns[runNo].GetAlphaParamNo() >= MSR_PARAM_FUN_OFFSET) + fout << "fun" << fRuns[runNo].GetAlphaParamNo()-MSR_PARAM_FUN_OFFSET; + else + fout << fRuns[runNo].GetAlphaParamNo() << std::endl; + fout << std::endl; } else if (sstr.BeginsWith("beta ")) { fout.width(16); fout << std::left << "beta"; - fout << fRuns[runNo].GetBetaParamNo() << std::endl; + if (fRuns[runNo].GetBetaParamNo() >= MSR_PARAM_FUN_OFFSET) + fout << "fun" << fRuns[runNo].GetBetaParamNo()-MSR_PARAM_FUN_OFFSET; + else + fout << fRuns[runNo].GetBetaParamNo() << std::endl; + fout << std::endl; } else if (sstr.BeginsWith("norm")) { fout.width(16); fout << std::left << "norm"; - // check if norm is give as a function + // check if norm is given as a function if (fRuns[runNo].GetNormParamNo() >= MSR_PARAM_FUN_OFFSET) fout << "fun" << fRuns[runNo].GetNormParamNo()-MSR_PARAM_FUN_OFFSET; else @@ -1939,14 +1948,24 @@ Int_t PMsrHandler::WriteMsrFile(const Char_t *filename, std::map= MSR_PARAM_FUN_OFFSET) + fout << "fun" << fRuns[i].GetAlphaParamNo()-MSR_PARAM_FUN_OFFSET; + else + fout << fRuns[i].GetAlphaParamNo(); + fout << std::endl; } // beta if (fRuns[i].GetBetaParamNo() != -1) { fout.width(16); fout << std::left << "beta"; - fout << fRuns[i].GetBetaParamNo() << std::endl; + // check if beta is give as a function + if (fRuns[i].GetBetaParamNo() >= MSR_PARAM_FUN_OFFSET) + fout << "fun" << fRuns[i].GetBetaParamNo()-MSR_PARAM_FUN_OFFSET; + else + fout << fRuns[i].GetBetaParamNo(); + fout << std::endl; } // norm @@ -3379,6 +3398,12 @@ Bool_t PMsrHandler::HandleRunEntry(PMsrLines &lines) param.SetAlphaParamNo(ival); else error = true; + } else if (str.Contains("fun")) { + Int_t no; + if (FilterNumber(str, "fun", MSR_PARAM_FUN_OFFSET, no)) + param.SetAlphaParamNo(no); + else + error = true; } else { error = true; } @@ -3399,6 +3424,12 @@ Bool_t PMsrHandler::HandleRunEntry(PMsrLines &lines) ival = str.Atoi(); if (ival > 0) param.SetBetaParamNo(ival); + else + error = true; + } else if (str.Contains("fun")) { + Int_t no; + if (FilterNumber(str, "fun", MSR_PARAM_FUN_OFFSET, no)) + param.SetBetaParamNo(no); else error = true; } else { @@ -4582,9 +4613,12 @@ Bool_t PMsrHandler::HandlePlotEntry(PMsrLines &lines) // handle a single PLOT block while ((iter1 != iter2) && !error) { + TString line = iter1->fLine; + if (line.First('#') != -1) // remove trailing comment before proceed + line.Resize(line.First('#')); - if (iter1->fLine.Contains("PLOT")) { // handle plot header - tokens = iter1->fLine.Tokenize(" \t"); + if (line.Contains("PLOT")) { // handle plot header + tokens = line.Tokenize(" \t"); if (!tokens) { std::cerr << std::endl << ">> PMsrHandler::HandlePlotEntry: **SEVERE ERROR** Couldn't tokenize PLOT in line " << iter1->fLineNo; std::cerr << std::endl << std::endl; @@ -4605,9 +4639,9 @@ Bool_t PMsrHandler::HandlePlotEntry(PMsrLines &lines) delete tokens; tokens = nullptr; } - } else if (iter1->fLine.Contains("lifetimecorrection", TString::kIgnoreCase)) { + } else if (line.Contains("lifetimecorrection", TString::kIgnoreCase)) { param.fLifeTimeCorrection = true; - } else if (iter1->fLine.Contains("runs", TString::kIgnoreCase)) { // handle plot runs + } else if (line.Contains("runs", TString::kIgnoreCase)) { // handle plot runs TComplex run; PStringNumberList *rl; std::string errorMsg; @@ -4623,7 +4657,7 @@ Bool_t PMsrHandler::HandlePlotEntry(PMsrLines &lines) case MSR_PLOT_ASYM_RRF: case MSR_PLOT_NON_MUSR: case MSR_PLOT_MU_MINUS: - rl = new PStringNumberList(iter1->fLine.Data()); + rl = new PStringNumberList(line.Data()); if (!rl->Parse(errorMsg, true)) { std::cerr << std::endl << ">> PMsrHandler::HandlePlotEntry: **SEVERE ERROR** Couldn't tokenize PLOT in line " << iter1->fLineNo; std::cerr << std::endl << ">> Error Message: " << errorMsg; @@ -4643,14 +4677,14 @@ Bool_t PMsrHandler::HandlePlotEntry(PMsrLines &lines) error = true; break; } - } else if (iter1->fLine.Contains("range ", TString::kIgnoreCase)) { // handle plot range + } else if (line.Contains("range ", TString::kIgnoreCase)) { // handle plot range // remove previous entries param.fTmin.clear(); param.fTmax.clear(); param.fYmin.clear(); param.fYmax.clear(); - tokens = iter1->fLine.Tokenize(" \t"); + tokens = line.Tokenize(" \t"); if (!tokens) { std::cerr << std::endl << ">> PMsrHandler::HandlePlotEntry: **SEVERE ERROR** Couldn't tokenize PLOT in line " << iter1->fLineNo; std::cerr << std::endl << std::endl; @@ -4700,14 +4734,14 @@ Bool_t PMsrHandler::HandlePlotEntry(PMsrLines &lines) delete tokens; tokens = nullptr; } - } else if (iter1->fLine.Contains("sub_ranges", TString::kIgnoreCase)) { + } else if (line.Contains("sub_ranges", TString::kIgnoreCase)) { // remove previous entries param.fTmin.clear(); param.fTmax.clear(); param.fYmin.clear(); param.fYmax.clear(); - tokens = iter1->fLine.Tokenize(" \t"); + tokens = line.Tokenize(" \t"); if (!tokens) { std::cerr << std::endl << ">> PMsrHandler::HandlePlotEntry: **SEVERE ERROR** Couldn't tokenize PLOT in line " << iter1->fLineNo; std::cerr << std::endl << std::endl; @@ -4762,11 +4796,11 @@ Bool_t PMsrHandler::HandlePlotEntry(PMsrLines &lines) delete tokens; tokens = nullptr; } - } else if (iter1->fLine.Contains("use_fit_ranges", TString::kIgnoreCase)) { + } else if (line.Contains("use_fit_ranges", TString::kIgnoreCase)) { param.fUseFitRanges = true; // check if y-ranges are given - tokens = iter1->fLine.Tokenize(" \t"); + tokens = line.Tokenize(" \t"); if (!tokens) { std::cerr << std::endl << ">> PMsrHandler::HandlePlotEntry: **SEVERE ERROR** Couldn't tokenize PLOT in line " << iter1->fLineNo; std::cerr << std::endl << std::endl; @@ -5207,12 +5241,20 @@ UInt_t PMsrHandler::GetNoOfFitParameters(UInt_t idx) paramVector.push_back(fRuns[idx].GetBkgFitParamNo()); // get alpha parameter if present (asymmetry fit) - if (fRuns[idx].GetAlphaParamNo() != -1) - paramVector.push_back(fRuns[idx].GetAlphaParamNo()); + if (fRuns[idx].GetAlphaParamNo() != -1) { + if (fRuns[idx].GetAlphaParamNo() < MSR_PARAM_FUN_OFFSET) // parameter + paramVector.push_back(fRuns[idx].GetAlphaParamNo()); + else // function + funVector.push_back(fRuns[idx].GetAlphaParamNo() - MSR_PARAM_FUN_OFFSET); + } // get beta parameter if present (asymmetry fit) - if (fRuns[idx].GetBetaParamNo() != -1) - paramVector.push_back(fRuns[idx].GetBetaParamNo()); + if (fRuns[idx].GetBetaParamNo() != -1) { + if (fRuns[idx].GetBetaParamNo() < MSR_PARAM_FUN_OFFSET) // parameter + paramVector.push_back(fRuns[idx].GetBetaParamNo()); + else // function + funVector.push_back(fRuns[idx].GetBetaParamNo() - MSR_PARAM_FUN_OFFSET); + } // go through the theory block and collect parameters // possible entries: number -> parameter, fun -> function, map -> maps diff --git a/src/classes/PRunAsymmetry.cpp b/src/classes/PRunAsymmetry.cpp index e1586867..d4fa8e91 100644 --- a/src/classes/PRunAsymmetry.cpp +++ b/src/classes/PRunAsymmetry.cpp @@ -111,7 +111,16 @@ PRunAsymmetry::PRunAsymmetry(PMsrHandler *msrInfo, PRunDataHandler *rawData, UIn return; } // check if alpha parameter is within proper bounds - if ((fRunInfo->GetAlphaParamNo() < 0) || (fRunInfo->GetAlphaParamNo() > static_cast(param->size()))) { + if (fRunInfo->GetAlphaParamNo() >= MSR_PARAM_FUN_OFFSET) { // alpha seems to be a function + if ((fRunInfo->GetAlphaParamNo()-MSR_PARAM_FUN_OFFSET < 0) || + (fRunInfo->GetAlphaParamNo()-MSR_PARAM_FUN_OFFSET > msrInfo->GetNoOfFuncs())) { + std::cerr << std::endl << ">> PRunAsymmetry::PRunAsymmetry(): **ERROR** alpha parameter is a function with no = " << fRunInfo->GetAlphaParamNo(); + std::cerr << std::endl << ">> This is out of bound, since there are only " << msrInfo->GetNoOfFuncs() << " functions."; + std::cerr << std::endl; + fValid = false; + return; + } + } else if ((fRunInfo->GetAlphaParamNo() < 0) || (fRunInfo->GetAlphaParamNo() > static_cast(param->size()))) { std::cerr << std::endl << ">> PRunAsymmetry::PRunAsymmetry(): **ERROR** alpha parameter no = " << fRunInfo->GetAlphaParamNo(); std::cerr << std::endl << ">> This is out of bound, since there are only " << param->size() << " parameters."; std::cerr << std::endl; @@ -120,10 +129,11 @@ PRunAsymmetry::PRunAsymmetry(PMsrHandler *msrInfo, PRunDataHandler *rawData, UIn } // check if alpha is fixed Bool_t alphaFixedToOne = false; - if (((*param)[fRunInfo->GetAlphaParamNo()-1].fStep == 0.0) && - ((*param)[fRunInfo->GetAlphaParamNo()-1].fValue == 1.0)) - alphaFixedToOne = true; - + if (fRunInfo->GetAlphaParamNo() < MSR_PARAM_FUN_OFFSET) { // alpha is parameter + if (((*param)[fRunInfo->GetAlphaParamNo()-1].fStep == 0.0) && + ((*param)[fRunInfo->GetAlphaParamNo()-1].fValue == 1.0)) + alphaFixedToOne = true; + } // check if beta is given Bool_t betaFixedToOne = false; if (fRunInfo->GetBetaParamNo() == -1) { // no beta given hence assuming beta == 1 @@ -196,6 +206,58 @@ Double_t PRunAsymmetry::CalcChiSquare(const std::vector& par) Double_t time(1.0); Int_t i; + // determine alpha/beta + switch (fAlphaBetaTag) { + case 1: // alpha == 1, beta == 1 + a = 1.0; + b = 1.0; + break; + case 2: // alpha != 1, beta == 1 + if (fRunInfo->GetAlphaParamNo() < MSR_PARAM_FUN_OFFSET) { // alpha is a parameter + a = par[fRunInfo->GetAlphaParamNo()-1]; + } else { // alpha is function + // get function number + UInt_t funNo = fRunInfo->GetAlphaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + a = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } + b = 1.0; + break; + case 3: // alpha == 1, beta != 1 + a = 1.0; + if (fRunInfo->GetBetaParamNo() < MSR_PARAM_FUN_OFFSET) { // beta is a parameter + b = par[fRunInfo->GetBetaParamNo()-1]; + } else { // beta is a function + // get function number + UInt_t funNo = fRunInfo->GetBetaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + b = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } + break; + case 4: // alpha != 1, beta != 1 + if (fRunInfo->GetAlphaParamNo() < MSR_PARAM_FUN_OFFSET) { // alpha is a parameter + a = par[fRunInfo->GetAlphaParamNo()-1]; + } else { // alpha is function + // get function number + UInt_t funNo = fRunInfo->GetAlphaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + a = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } + if (fRunInfo->GetBetaParamNo() < MSR_PARAM_FUN_OFFSET) { // beta is a parameter + b = par[fRunInfo->GetBetaParamNo()-1]; + } else { // beta is a function + // get function number + UInt_t funNo = fRunInfo->GetBetaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + b = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } + break; + default: + a = 1.0; + b = 1.0; + break; + } + // Calculate the theory function once to ensure one function evaluation for the current set of parameters. // This is needed for the LF and user functions where some non-thread-save calculations only need to be calculated once // for a given set of parameters---which should be done outside of the parallelized loop. @@ -206,34 +268,12 @@ Double_t PRunAsymmetry::CalcChiSquare(const std::vector& par) Int_t chunk = (fEndTimeBin - fStartTimeBin)/omp_get_num_procs(); if (chunk < 10) chunk = 10; - #pragma omp parallel for default(shared) private(i,time,diff,asymFcnValue,a,b,f) schedule(dynamic,chunk) reduction(+:chisq) + #pragma omp parallel for default(shared) private(i,time,diff,asymFcnValue,f) schedule(dynamic,chunk) reduction(+:chisq) #endif for (i=fStartTimeBin; i(i)*fData.GetDataTimeStep(); - switch (fAlphaBetaTag) { - case 1: // alpha == 1, beta == 1 - asymFcnValue = fTheory->Func(time, par, fFuncValues); - break; - case 2: // alpha != 1, beta == 1 - a = par[fRunInfo->GetAlphaParamNo()-1]; - f = fTheory->Func(time, par, fFuncValues); - asymFcnValue = (f*(a+1.0)-(a-1.0))/((a+1.0)-f*(a-1.0)); - break; - case 3: // alpha == 1, beta != 1 - b = par[fRunInfo->GetBetaParamNo()-1]; - f = fTheory->Func(time, par, fFuncValues); - asymFcnValue = f*(b+1.0)/(2.0-f*(b-1.0)); - break; - case 4: // alpha != 1, beta != 1 - a = par[fRunInfo->GetAlphaParamNo()-1]; - b = par[fRunInfo->GetBetaParamNo()-1]; - f = fTheory->Func(time, par, fFuncValues); - asymFcnValue = (f*(a*b+1.0)-(a-1.0))/((a+1.0)-f*(a*b-1.0)); - break; - default: - asymFcnValue = 0.0; - break; - } + f = fTheory->Func(time, par, fFuncValues); + asymFcnValue = (f*(a*b+1.0)-(a-1.0))/((a+1.0)-f*(a*b-1.0)); diff = fData.GetValue()->at(i) - asymFcnValue; chisq += diff*diff / (fData.GetError()->at(i)*fData.GetError()->at(i)); } @@ -429,18 +469,46 @@ void PRunAsymmetry::CalcTheory() asymFcnValue = fTheory->Func(time, par, fFuncValues); break; case 2: // alpha != 1, beta == 1 - a = par[fRunInfo->GetAlphaParamNo()-1]; + if (fRunInfo->GetAlphaParamNo() < MSR_PARAM_FUN_OFFSET) { // alpha is a parameter + a = par[fRunInfo->GetAlphaParamNo()-1]; + } else { // alpha is function + // get function number + UInt_t funNo = fRunInfo->GetAlphaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + a = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } f = fTheory->Func(time, par, fFuncValues); asymFcnValue = (f*(a+1.0)-(a-1.0))/((a+1.0)-f*(a-1.0)); break; case 3: // alpha == 1, beta != 1 - b = par[fRunInfo->GetBetaParamNo()-1]; + if (fRunInfo->GetBetaParamNo() < MSR_PARAM_FUN_OFFSET) { // beta is a parameter + b = par[fRunInfo->GetBetaParamNo()-1]; + } else { // beta is a function + // get function number + UInt_t funNo = fRunInfo->GetBetaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + b = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } f = fTheory->Func(time, par, fFuncValues); asymFcnValue = f*(b+1.0)/(2.0-f*(b-1.0)); break; case 4: // alpha != 1, beta != 1 - a = par[fRunInfo->GetAlphaParamNo()-1]; - b = par[fRunInfo->GetBetaParamNo()-1]; + if (fRunInfo->GetAlphaParamNo() < MSR_PARAM_FUN_OFFSET) { // alpha is a parameter + a = par[fRunInfo->GetAlphaParamNo()-1]; + } else { // alpha is function + // get function number + UInt_t funNo = fRunInfo->GetAlphaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + a = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } + if (fRunInfo->GetBetaParamNo() < MSR_PARAM_FUN_OFFSET) { // beta is a parameter + b = par[fRunInfo->GetBetaParamNo()-1]; + } else { // beta is a function + // get function number + UInt_t funNo = fRunInfo->GetBetaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + b = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } f = fTheory->Func(time, par, fFuncValues); asymFcnValue = (f*(a*b+1.0)-(a-1.0))/((a+1.0)-f*(a*b-1.0)); break; @@ -1138,16 +1206,44 @@ Bool_t PRunAsymmetry::PrepareViewData(PRawRunData* runData, UInt_t histoNo[2]) beta = 1.0; break; case 2: // alpha != 1, beta == 1 - alpha = par[fRunInfo->GetAlphaParamNo()-1]; + if (fRunInfo->GetAlphaParamNo() < MSR_PARAM_FUN_OFFSET) { // alpha is a parameter + alpha = par[fRunInfo->GetAlphaParamNo()-1]; + } else { // alpha is function + // get function number + UInt_t funNo = fRunInfo->GetAlphaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + alpha = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } beta = 1.0; break; case 3: // alpha == 1, beta != 1 alpha = 1.0; - beta = par[fRunInfo->GetBetaParamNo()-1]; + if (fRunInfo->GetBetaParamNo() < MSR_PARAM_FUN_OFFSET) { // beta is a parameter + beta = par[fRunInfo->GetBetaParamNo()-1]; + } else { // beta is a function + // get function number + UInt_t funNo = fRunInfo->GetBetaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + beta = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } break; case 4: // alpha != 1, beta != 1 - alpha = par[fRunInfo->GetAlphaParamNo()-1]; - beta = par[fRunInfo->GetBetaParamNo()-1]; + if (fRunInfo->GetAlphaParamNo() < MSR_PARAM_FUN_OFFSET) { // alpha is a parameter + alpha = par[fRunInfo->GetAlphaParamNo()-1]; + } else { // alpha is function + // get function number + UInt_t funNo = fRunInfo->GetAlphaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + alpha = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } + if (fRunInfo->GetBetaParamNo() < MSR_PARAM_FUN_OFFSET) { // beta is a parameter + beta = par[fRunInfo->GetBetaParamNo()-1]; + } else { // beta is a function + // get function number + UInt_t funNo = fRunInfo->GetBetaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + beta = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } break; default: break; @@ -1349,16 +1445,44 @@ Bool_t PRunAsymmetry::PrepareRRFViewData(PRawRunData* runData, UInt_t histoNo[2] beta = 1.0; break; case 2: // alpha != 1, beta == 1 - alpha = par[fRunInfo->GetAlphaParamNo()-1]; + if (fRunInfo->GetAlphaParamNo() < MSR_PARAM_FUN_OFFSET) { // alpha is a parameter + alpha = par[fRunInfo->GetAlphaParamNo()-1]; + } else { // alpha is function + // get function number + UInt_t funNo = fRunInfo->GetAlphaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + alpha = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } beta = 1.0; break; case 3: // alpha == 1, beta != 1 alpha = 1.0; - beta = par[fRunInfo->GetBetaParamNo()-1]; + if (fRunInfo->GetBetaParamNo() < MSR_PARAM_FUN_OFFSET) { // beta is a parameter + beta = par[fRunInfo->GetBetaParamNo()-1]; + } else { // beta is a function + // get function number + UInt_t funNo = fRunInfo->GetBetaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + beta = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } break; case 4: // alpha != 1, beta != 1 - alpha = par[fRunInfo->GetAlphaParamNo()-1]; - beta = par[fRunInfo->GetBetaParamNo()-1]; + if (fRunInfo->GetAlphaParamNo() < MSR_PARAM_FUN_OFFSET) { // alpha is a parameter + alpha = par[fRunInfo->GetAlphaParamNo()-1]; + } else { // alpha is function + // get function number + UInt_t funNo = fRunInfo->GetAlphaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + alpha = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } + if (fRunInfo->GetBetaParamNo() < MSR_PARAM_FUN_OFFSET) { // beta is a parameter + beta = par[fRunInfo->GetBetaParamNo()-1]; + } else { // beta is a function + // get function number + UInt_t funNo = fRunInfo->GetBetaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + beta = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } break; default: break; diff --git a/src/classes/PRunAsymmetryBNMR.cpp b/src/classes/PRunAsymmetryBNMR.cpp index 9b95c074..66b7626c 100644 --- a/src/classes/PRunAsymmetryBNMR.cpp +++ b/src/classes/PRunAsymmetryBNMR.cpp @@ -206,56 +206,90 @@ Double_t PRunAsymmetryBNMR::CalcChiSquare(const std::vector& par) Double_t time(1.0),alphaest; Int_t i; + // determine alpha/beta + alphaest = fRunInfo->GetEstimatedAlpha(); + switch (fAlphaBetaTag) { + case 1: // alpha == 1, beta == 1 + a = 1.0; + b = 1.0; + break; + case 2: // alpha != 1, beta == 1 + if (fRunInfo->GetAlphaParamNo() < MSR_PARAM_FUN_OFFSET) { // alpha is a parameter + a = par[fRunInfo->GetAlphaParamNo()-1]; + } else { // alpha is function + // get function number + UInt_t funNo = fRunInfo->GetAlphaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + a = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } + b = 1.0; + break; + case 3: // alpha == 1, beta != 1 + a = 1.0; + if (fRunInfo->GetBetaParamNo() < MSR_PARAM_FUN_OFFSET) { // beta is a parameter + b = par[fRunInfo->GetBetaParamNo()-1]; + } else { // beta is a function + // get function number + UInt_t funNo = fRunInfo->GetBetaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + b = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } + break; + case 4: // alpha != 1, beta != 1 + if (fRunInfo->GetAlphaParamNo() < MSR_PARAM_FUN_OFFSET) { // alpha is a parameter + a = par[fRunInfo->GetAlphaParamNo()-1]; + } else { // alpha is function + // get function number + UInt_t funNo = fRunInfo->GetAlphaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + a = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } + if (fRunInfo->GetBetaParamNo() < MSR_PARAM_FUN_OFFSET) { // beta is a parameter + b = par[fRunInfo->GetBetaParamNo()-1]; + } else { // beta is a function + // get function number + UInt_t funNo = fRunInfo->GetBetaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + b = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } + break; + case 5: // alpha ?? , beta == 1 + a = alphaest; + b = 1.0; + break; + case 6: // alpha ??, beta != 1 + a = alphaest; + if (fRunInfo->GetBetaParamNo() < MSR_PARAM_FUN_OFFSET) { // beta is a parameter + b = par[fRunInfo->GetBetaParamNo()-1]; + } else { // beta is a function + // get function number + UInt_t funNo = fRunInfo->GetBetaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + b = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } + break; + default: + a = 1.0; + b = 1.0; + break; + } + // Calculate the theory function once to ensure one function evaluation for the current set of parameters. // This is needed for the LF and user functions where some non-thread-save calculations only need to be calculated once // for a given set of parameters---which should be done outside of the parallelized loop. // For all other functions it means a tiny and acceptable overhead. asymFcnValue = fTheory->Func(time, par, fFuncValues); - alphaest = fRunInfo->GetEstimatedAlpha(); #ifdef HAVE_GOMP Int_t chunk = (fEndTimeBin - fStartTimeBin)/omp_get_num_procs(); if (chunk < 10) chunk = 10; - #pragma omp parallel for default(shared) private(i,time,diff,asymFcnValue,a,b,f) schedule(dynamic,chunk) reduction(+:chisq) + #pragma omp parallel for default(shared) private(i,time,diff,asymFcnValue,f) schedule(dynamic,chunk) reduction(+:chisq) #endif for (i=fStartTimeBin; i(i)*fData.GetDataTimeStep(); - switch (fAlphaBetaTag) { - case 1: // alpha == 1, beta == 1 - asymFcnValue = fTheory->Func(time, par, fFuncValues); - break; - case 2: // alpha != 1, beta == 1 - a = par[fRunInfo->GetAlphaParamNo()-1]; - f = fTheory->Func(time, par, fFuncValues)/2.0; - asymFcnValue = (f*(a+1.0)-(a-1.0))/((a+1.0)-f*(a-1.0)) - (-f*(a+1.0)-(a-1.0))/((a+1.0)+f*(a-1.0)); - break; - case 3: // alpha == 1, beta != 1 - b = par[fRunInfo->GetBetaParamNo()-1]; - f = fTheory->Func(time, par, fFuncValues)/2.0; - asymFcnValue = f*(b+1.0)/(2.0-f*(b-1.0))-f*(b+1.0)/(2.0+f*(b-1.0)); - break; - case 4: // alpha != 1, beta != 1 - a = par[fRunInfo->GetAlphaParamNo()-1]; - b = par[fRunInfo->GetBetaParamNo()-1]; - f = fTheory->Func(time, par, fFuncValues)/2.0; - asymFcnValue = (f*(a*b+1.0)-(a-1.0))/((a+1.0)-f*(a*b-1.0))-(-f*(a*b+1.0)-(a-1.0))/((a+1.0)+f*(a*b-1.0)); - break; - case 5: // alpha ?? , beta == 1 - a = alphaest; - f = fTheory->Func(time, par, fFuncValues)/2.0; - asymFcnValue = (f*(a+1.0)-(a-1.0))/((a+1.0)-f*(a-1.0)) - (-f*(a+1.0)-(a-1.0))/((a+1.0)+f*(a-1.0)); - break; - case 6: // alpha ??, beta != 1 - a = alphaest; - b = par[fRunInfo->GetBetaParamNo()-1]; - f = fTheory->Func(time, par, fFuncValues)/2.0; - asymFcnValue = (f*(a*b+1.0)-(a-1.0))/((a+1.0)-f*(a*b-1.0))-(-f*(a*b+1.0)-(a-1.0))/((a+1.0)+f*(a*b-1.0)); - break; - default: - asymFcnValue = 0.0; - break; - } + f = fTheory->Func(time, par, fFuncValues)/2.0; + asymFcnValue = (f*(a*b+1.0)-(a-1.0))/((a+1.0)-f*(a*b-1.0))-(-f*(a*b+1.0)-(a-1.0))/((a+1.0)+f*(a*b-1.0)); diff = fData.GetValue()->at(i) - asymFcnValue; chisq += diff*diff / (fData.GetError()->at(i)*fData.GetError()->at(i)); } @@ -455,18 +489,46 @@ void PRunAsymmetryBNMR::CalcTheory() asymFcnValue = fTheory->Func(time, par, fFuncValues); break; case 2: // alpha != 1, beta == 1 - a = par[fRunInfo->GetAlphaParamNo()-1]; + if (fRunInfo->GetAlphaParamNo() < MSR_PARAM_FUN_OFFSET) { // alpha is a parameter + a = par[fRunInfo->GetAlphaParamNo()-1]; + } else { // alpha is function + // get function number + UInt_t funNo = fRunInfo->GetAlphaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + a = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } f = fTheory->Func(time, par, fFuncValues); asymFcnValue = (f*(a+1.0)-(a-1.0))/((a+1.0)-f*(a-1.0)) - (-f*(a+1.0)-(a-1.0))/((a+1.0)+f*(a-1.0)); break; case 3: // alpha == 1, beta != 1 - b = par[fRunInfo->GetBetaParamNo()-1]; + if (fRunInfo->GetBetaParamNo() < MSR_PARAM_FUN_OFFSET) { // beta is a parameter + b = par[fRunInfo->GetBetaParamNo()-1]; + } else { // beta is a function + // get function number + UInt_t funNo = fRunInfo->GetBetaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + b = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } f = fTheory->Func(time, par, fFuncValues); asymFcnValue = f*(b+1.0)/(2.0-f*(b-1.0))-f*(b+1.0)/(2.0+f*(b-1.0)); break; case 4: // alpha != 1, beta != 1 - a = par[fRunInfo->GetAlphaParamNo()-1]; - b = par[fRunInfo->GetBetaParamNo()-1]; + if (fRunInfo->GetAlphaParamNo() < MSR_PARAM_FUN_OFFSET) { // alpha is a parameter + a = par[fRunInfo->GetAlphaParamNo()-1]; + } else { // alpha is function + // get function number + UInt_t funNo = fRunInfo->GetAlphaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + a = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } + if (fRunInfo->GetBetaParamNo() < MSR_PARAM_FUN_OFFSET) { // beta is a parameter + b = par[fRunInfo->GetBetaParamNo()-1]; + } else { // beta is a function + // get function number + UInt_t funNo = fRunInfo->GetBetaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + b = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } f = fTheory->Func(time, par, fFuncValues); asymFcnValue = (f*(a*b+1.0)-(a-1.0))/((a+1.0)-f*(a*b-1.0))-(-f*(a*b+1.0)-(a-1.0))/((a+1.0)+f*(a*b-1.0)); break; @@ -477,7 +539,14 @@ void PRunAsymmetryBNMR::CalcTheory() break; case 6: // alpha ??, beta != 1 a = alphaest; - b = par[fRunInfo->GetBetaParamNo()-1]; + if (fRunInfo->GetBetaParamNo() < MSR_PARAM_FUN_OFFSET) { // beta is a parameter + b = par[fRunInfo->GetBetaParamNo()-1]; + } else { // beta is a function + // get function number + UInt_t funNo = fRunInfo->GetBetaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + b = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } f = fTheory->Func(time, par, fFuncValues); asymFcnValue = (f*(a*b+1.0)-(a-1.0))/((a+1.0)-f*(a*b-1.0))-(-f*(a*b+1.0)-(a-1.0))/((a+1.0)+f*(a*b-1.0)); break; @@ -1287,16 +1356,44 @@ Bool_t PRunAsymmetryBNMR::PrepareViewData(PRawRunData* runData, UInt_t histoNo[2 beta = 1.0; break; case 2: // alpha != 1, beta == 1 - alpha = par[fRunInfo->GetAlphaParamNo()-1]; + if (fRunInfo->GetAlphaParamNo() < MSR_PARAM_FUN_OFFSET) { // alpha is a parameter + alpha = par[fRunInfo->GetAlphaParamNo()-1]; + } else { // alpha is function + // get function number + UInt_t funNo = fRunInfo->GetAlphaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + alpha = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } beta = 1.0; break; case 3: // alpha == 1, beta != 1 alpha = 1.0; - beta = par[fRunInfo->GetBetaParamNo()-1]; + if (fRunInfo->GetBetaParamNo() < MSR_PARAM_FUN_OFFSET) { // beta is a parameter + beta = par[fRunInfo->GetBetaParamNo()-1]; + } else { // beta is a function + // get function number + UInt_t funNo = fRunInfo->GetBetaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + beta = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } break; case 4: // alpha != 1, beta != 1 - alpha = par[fRunInfo->GetAlphaParamNo()-1]; - beta = par[fRunInfo->GetBetaParamNo()-1]; + if (fRunInfo->GetAlphaParamNo() < MSR_PARAM_FUN_OFFSET) { // alpha is a parameter + alpha = par[fRunInfo->GetAlphaParamNo()-1]; + } else { // alpha is function + // get function number + UInt_t funNo = fRunInfo->GetAlphaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + alpha = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } + if (fRunInfo->GetBetaParamNo() < MSR_PARAM_FUN_OFFSET) { // beta is a parameter + beta = par[fRunInfo->GetBetaParamNo()-1]; + } else { // beta is a function + // get function number + UInt_t funNo = fRunInfo->GetBetaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + beta = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } break; case 5: // alpha ?? , beta == 1 // use estimated value @@ -1304,7 +1401,14 @@ Bool_t PRunAsymmetryBNMR::PrepareViewData(PRawRunData* runData, UInt_t histoNo[2 break; case 6: // alpha ??, beta != 1 // use estimated value - beta = par[fRunInfo->GetBetaParamNo()-1]; + if (fRunInfo->GetBetaParamNo() < MSR_PARAM_FUN_OFFSET) { // beta is a parameter + beta = par[fRunInfo->GetBetaParamNo()-1]; + } else { // beta is a function + // get function number + UInt_t funNo = fRunInfo->GetBetaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + beta = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } break; default: break; diff --git a/src/classes/PRunAsymmetryRRF.cpp b/src/classes/PRunAsymmetryRRF.cpp index 8294c28e..4c15952b 100644 --- a/src/classes/PRunAsymmetryRRF.cpp +++ b/src/classes/PRunAsymmetryRRF.cpp @@ -188,6 +188,58 @@ Double_t PRunAsymmetryRRF::CalcChiSquare(const std::vector& par) Double_t time(1.0); Int_t i; + // determine alpha/beta + switch (fAlphaBetaTag) { + case 1: // alpha == 1, beta == 1 + a = 1.0; + b = 1.0; + break; + case 2: // alpha != 1, beta == 1 + if (fRunInfo->GetAlphaParamNo() < MSR_PARAM_FUN_OFFSET) { // alpha is a parameter + a = par[fRunInfo->GetAlphaParamNo()-1]; + } else { // alpha is function + // get function number + UInt_t funNo = fRunInfo->GetAlphaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + a = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } + b = 1.0; + break; + case 3: // alpha == 1, beta != 1 + a = 1.0; + if (fRunInfo->GetBetaParamNo() < MSR_PARAM_FUN_OFFSET) { // beta is a parameter + b = par[fRunInfo->GetBetaParamNo()-1]; + } else { // beta is a function + // get function number + UInt_t funNo = fRunInfo->GetBetaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + b = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } + break; + case 4: // alpha != 1, beta != 1 + if (fRunInfo->GetAlphaParamNo() < MSR_PARAM_FUN_OFFSET) { // alpha is a parameter + a = par[fRunInfo->GetAlphaParamNo()-1]; + } else { // alpha is function + // get function number + UInt_t funNo = fRunInfo->GetAlphaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + a = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } + if (fRunInfo->GetBetaParamNo() < MSR_PARAM_FUN_OFFSET) { // beta is a parameter + b = par[fRunInfo->GetBetaParamNo()-1]; + } else { // beta is a function + // get function number + UInt_t funNo = fRunInfo->GetBetaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + b = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } + break; + default: + a = 1.0; + b = 1.0; + break; + } + // Calculate the theory function once to ensure one function evaluation for the current set of parameters. // This is needed for the LF and user functions where some non-thread-save calculations only need to be calculated once // for a given set of parameters---which should be done outside of the parallelized loop. @@ -198,34 +250,12 @@ Double_t PRunAsymmetryRRF::CalcChiSquare(const std::vector& par) Int_t chunk = (fEndTimeBin - fStartTimeBin)/omp_get_num_procs(); if (chunk < 10) chunk = 10; - #pragma omp parallel for default(shared) private(i,time,diff,asymFcnValue,a,b,f) schedule(dynamic,chunk) reduction(+:chisq) + #pragma omp parallel for default(shared) private(i,time,diff,asymFcnValue,f) schedule(dynamic,chunk) reduction(+:chisq) #endif for (i=fStartTimeBin; i(i)*fData.GetDataTimeStep(); - switch (fAlphaBetaTag) { - case 1: // alpha == 1, beta == 1 - asymFcnValue = fTheory->Func(time, par, fFuncValues); - break; - case 2: // alpha != 1, beta == 1 - a = par[fRunInfo->GetAlphaParamNo()-1]; - f = fTheory->Func(time, par, fFuncValues); - asymFcnValue = (f*(a+1.0)-(a-1.0))/((a+1.0)-f*(a-1.0)); - break; - case 3: // alpha == 1, beta != 1 - b = par[fRunInfo->GetBetaParamNo()-1]; - f = fTheory->Func(time, par, fFuncValues); - asymFcnValue = f*(b+1.0)/(2.0-f*(b-1.0)); - break; - case 4: // alpha != 1, beta != 1 - a = par[fRunInfo->GetAlphaParamNo()-1]; - b = par[fRunInfo->GetBetaParamNo()-1]; - f = fTheory->Func(time, par, fFuncValues); - asymFcnValue = (f*(a*b+1.0)-(a-1.0))/((a+1.0)-f*(a*b-1.0)); - break; - default: - asymFcnValue = 0.0; - break; - } + f = fTheory->Func(time, par, fFuncValues); + asymFcnValue = (f*(a*b+1.0)-(a-1.0))/((a+1.0)-f*(a*b-1.0)); diff = fData.GetValue()->at(i) - asymFcnValue; chisq += diff*diff / (fData.GetError()->at(i)*fData.GetError()->at(i)); } @@ -421,18 +451,46 @@ void PRunAsymmetryRRF::CalcTheory() asymFcnValue = fTheory->Func(time, par, fFuncValues); break; case 2: // alpha != 1, beta == 1 - a = par[fRunInfo->GetAlphaParamNo()-1]; + if (fRunInfo->GetAlphaParamNo() < MSR_PARAM_FUN_OFFSET) { // alpha is a parameter + a = par[fRunInfo->GetAlphaParamNo()-1]; + } else { // alpha is function + // get function number + UInt_t funNo = fRunInfo->GetAlphaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + a = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } f = fTheory->Func(time, par, fFuncValues); asymFcnValue = (f*(a+1.0)-(a-1.0))/((a+1.0)-f*(a-1.0)); break; case 3: // alpha == 1, beta != 1 - b = par[fRunInfo->GetBetaParamNo()-1]; + if (fRunInfo->GetBetaParamNo() < MSR_PARAM_FUN_OFFSET) { // beta is a parameter + b = par[fRunInfo->GetBetaParamNo()-1]; + } else { // beta is a function + // get function number + UInt_t funNo = fRunInfo->GetBetaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + b = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } f = fTheory->Func(time, par, fFuncValues); asymFcnValue = f*(b+1.0)/(2.0-f*(b-1.0)); break; case 4: // alpha != 1, beta != 1 - a = par[fRunInfo->GetAlphaParamNo()-1]; - b = par[fRunInfo->GetBetaParamNo()-1]; + if (fRunInfo->GetAlphaParamNo() < MSR_PARAM_FUN_OFFSET) { // alpha is a parameter + a = par[fRunInfo->GetAlphaParamNo()-1]; + } else { // alpha is function + // get function number + UInt_t funNo = fRunInfo->GetAlphaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + a = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } + if (fRunInfo->GetBetaParamNo() < MSR_PARAM_FUN_OFFSET) { // beta is a parameter + b = par[fRunInfo->GetBetaParamNo()-1]; + } else { // beta is a function + // get function number + UInt_t funNo = fRunInfo->GetBetaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + b = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } f = fTheory->Func(time, par, fFuncValues); asymFcnValue = (f*(a*b+1.0)-(a-1.0))/((a+1.0)-f*(a*b-1.0)); break; @@ -1034,16 +1092,44 @@ Bool_t PRunAsymmetryRRF::PrepareViewData(PRawRunData* runData, UInt_t histoNo[2] beta = 1.0; break; case 2: // alpha != 1, beta == 1 - alpha = par[fRunInfo->GetAlphaParamNo()-1]; + if (fRunInfo->GetAlphaParamNo() < MSR_PARAM_FUN_OFFSET) { // alpha is a parameter + alpha = par[fRunInfo->GetAlphaParamNo()-1]; + } else { // alpha is function + // get function number + UInt_t funNo = fRunInfo->GetAlphaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + alpha = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } beta = 1.0; break; case 3: // alpha == 1, beta != 1 alpha = 1.0; - beta = par[fRunInfo->GetBetaParamNo()-1]; + if (fRunInfo->GetBetaParamNo() < MSR_PARAM_FUN_OFFSET) { // beta is a parameter + beta = par[fRunInfo->GetBetaParamNo()-1]; + } else { // beta is a function + // get function number + UInt_t funNo = fRunInfo->GetBetaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + beta = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } break; case 4: // alpha != 1, beta != 1 - alpha = par[fRunInfo->GetAlphaParamNo()-1]; - beta = par[fRunInfo->GetBetaParamNo()-1]; + if (fRunInfo->GetAlphaParamNo() < MSR_PARAM_FUN_OFFSET) { // alpha is a parameter + alpha = par[fRunInfo->GetAlphaParamNo()-1]; + } else { // alpha is function + // get function number + UInt_t funNo = fRunInfo->GetAlphaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + alpha = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } + if (fRunInfo->GetBetaParamNo() < MSR_PARAM_FUN_OFFSET) { // beta is a parameter + beta = par[fRunInfo->GetBetaParamNo()-1]; + } else { // beta is a function + // get function number + UInt_t funNo = fRunInfo->GetBetaParamNo()-MSR_PARAM_FUN_OFFSET; + // evaluate function + beta = fMsrInfo->EvalFunc(funNo, *fRunInfo->GetMap(), par); + } break; default: break; From 58461bf01372e8baeb24bf53909307e9c7696abf Mon Sep 17 00:00:00 2001 From: Andreas Suter Date: Mon, 25 May 2020 16:27:18 +0200 Subject: [PATCH 2/2] updated the docu and adopted the ChangLog --- ChangeLog | 5 +++++ doc/html/.buildinfo | 2 +- doc/html/_sources/user-manual.rst.txt | 12 +++++++++--- doc/html/_static/documentation_options.js | 2 +- doc/html/acknowledgement.html | 8 ++++---- doc/html/any2many.html | 8 ++++---- doc/html/bugtracking.html | 8 ++++---- doc/html/cite.html | 8 ++++---- doc/html/genindex.html | 8 ++++---- doc/html/index.html | 8 ++++---- doc/html/msr2data.html | 8 ++++---- doc/html/mupp.html | 8 ++++---- doc/html/musr-root.html | 8 ++++---- doc/html/musredit.html | 8 ++++---- doc/html/search.html | 8 ++++---- doc/html/setup-dks.html | 8 ++++---- doc/html/setup-standard.html | 8 ++++---- doc/html/tutorial.html | 8 ++++---- doc/html/user-libs.html | 8 ++++---- doc/html/user-manual.html | 18 +++++++++++------- 20 files changed, 87 insertions(+), 72 deletions(-) diff --git a/ChangeLog b/ChangeLog index 83f6f199..074bbde2 100644 --- a/ChangeLog +++ b/ChangeLog @@ -12,6 +12,11 @@ or https://bitbucket.org/muonspin/musrfit/commits/all +Release of V1.6.1, 2020/05/25 +============================= + +For asymmetry fits: allow alpha, beta in the RUN block to be functions. + Release of V1.6.0, 2020/05/16 ============================= diff --git a/doc/html/.buildinfo b/doc/html/.buildinfo index 7ac2c58d..b66b59df 100644 --- a/doc/html/.buildinfo +++ b/doc/html/.buildinfo @@ -1,4 +1,4 @@ # Sphinx build info version 1 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done. -config: 90c2680fff90669033f1bce5f6912272 +config: 2fd2e79340d6214c8fde0515f4f3fbe3 tags: 645f666f9bcd5a90fca523b33c5a78b7 diff --git a/doc/html/_sources/user-manual.rst.txt b/doc/html/_sources/user-manual.rst.txt index 3e8e23bc..b20c63dd 100644 --- a/doc/html/_sources/user-manual.rst.txt +++ b/doc/html/_sources/user-manual.rst.txt @@ -775,7 +775,7 @@ The FUNCTIONS Block +++++++++++++++++++ Here some auxiliary functions can be defined. These functions can currently *only* operate on the defined parameters. They can be used in the -:ref:`THEORY block ` and for one specific case in the :ref:`RUN block `. Supported is the use of basic arithmetic: +:ref:`THEORY block ` and for three specific cases in the :ref:`RUN block ` (`norm`, `alpha`, and `beta`). Supported is the use of basic arithmetic: :math:`+` Addition @@ -1064,18 +1064,24 @@ In order to describe the operations needed for fitting and plotting, quite some .. _msr-alpha-beta: **alpha, beta** (fit type 2, 3, 5) - These parameters are used to correct the asymmetry for different detector efficiencies, solid angles and initial asymmetries. They are defined as :math:`\alpha = N_{0,b}/N_{0,f}` and :math:`\beta = A_{0,b}/A_{0,f}`. If the parameters are not specified in the :ref:`RUN block `, for each one the value of 1 is assumed (for fittype 5, alpha is estimated from the ratio of :math:`\sum_i \left( N_{\mathrm{bp}}(i)+N_{\mathrm{bm}}(i) \right)` and :math:`\sum_i \left( N_{\mathrm{fp}}(i)+N_{\mathrm{fm}}(i) \right)`). Example for alpha with fit parameter number 1: + These parameters are used to correct the asymmetry for different detector efficiencies, solid angles and initial asymmetries. They are defined as :math:`\alpha = N_{0,b}/N_{0,f}` and :math:`\beta = A_{0,b}/A_{0,f}`. If the parameters are not specified in the :ref:`RUN block `, for each one the value of 1 is assumed (for fittype 5, alpha is estimated from the ratio of :math:`\sum_i \left( N_{\mathrm{bp}}(i)+N_{\mathrm{bm}}(i) \right)` and :math:`\sum_i \left( N_{\mathrm{fp}}(i)+N_{\mathrm{fm}}(i) \right)`). Both, `alpha` as well as `beta` can be expressed through a function. Example for alpha with fit parameter number 1: :: alpha 1 + Example for an ``alpha`` defined via function number 1: + + :: + + alpha fun1 + .. index:: norm .. _msr-norm: **norm** (fit type 0) Number of the fit parameter that represents the normalization constant :math:`N_0` of the histogram; the value of this parameter is given either per nanosecond or per bin (see :ref:`below `). - It is possible to substitute the parameter number by a function here (and only here in a RUN block), for instance to relate :math:`N_0`\'s of different histograms through an :math:`\alpha` + It is possible to substitute the parameter number by a function, for instance to relate :math:`N_0`\'s of different histograms through an :math:`\alpha` parameter. Example for a ``norm`` defined by fit parameter number 12: :: diff --git a/doc/html/_static/documentation_options.js b/doc/html/_static/documentation_options.js index c5d9c26f..63761070 100644 --- a/doc/html/_static/documentation_options.js +++ b/doc/html/_static/documentation_options.js @@ -1,6 +1,6 @@ var DOCUMENTATION_OPTIONS = { URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'), - VERSION: '1.6.0', + VERSION: '1.6.1', LANGUAGE: 'None', COLLAPSE_INDEX: false, FILE_SUFFIX: '.html', diff --git a/doc/html/acknowledgement.html b/doc/html/acknowledgement.html index cfb036e7..ffebb3a1 100644 --- a/doc/html/acknowledgement.html +++ b/doc/html/acknowledgement.html @@ -4,7 +4,7 @@ - Acknowledgements — musrfit 1.6.0 documentation + Acknowledgements — musrfit 1.6.1 documentation @@ -30,7 +30,7 @@
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    • @@ -100,12 +100,12 @@ extremely competent way to deal with his projects as well as to deal with the ch
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    • @@ -81,12 +81,12 @@ or send an e-mail to A. Suter at PSI.

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    • @@ -1293,12 +1293,12 @@ $ musrview test-histo-ROOT-NPP.msr
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    • @@ -897,7 +897,7 @@ instead of specifying the parameters directly.

    The FUNCTIONS Block

    Here some auxiliary functions can be defined. These functions can currently only operate on the defined parameters. They can be used in the -THEORY block and for one specific case in the RUN block. Supported is the use of basic arithmetic:

    +THEORY block and for three specific cases in the RUN block (norm, alpha, and beta). Supported is the use of basic arithmetic:

    \(+\)

    Addition

    @@ -1169,15 +1169,19 @@ a short digression is needed.

    -
    alpha, beta (fit type 2, 3, 5)

    These parameters are used to correct the asymmetry for different detector efficiencies, solid angles and initial asymmetries. They are defined as \(\alpha = N_{0,b}/N_{0,f}\) and \(\beta = A_{0,b}/A_{0,f}\). If the parameters are not specified in the RUN block, for each one the value of 1 is assumed (for fittype 5, alpha is estimated from the ratio of \(\sum_i \left( N_{\mathrm{bp}}(i)+N_{\mathrm{bm}}(i) \right)\) and \(\sum_i \left( N_{\mathrm{fp}}(i)+N_{\mathrm{fm}}(i) \right)\)). Example for alpha with fit parameter number 1:

    +
    alpha, beta (fit type 2, 3, 5)

    These parameters are used to correct the asymmetry for different detector efficiencies, solid angles and initial asymmetries. They are defined as \(\alpha = N_{0,b}/N_{0,f}\) and \(\beta = A_{0,b}/A_{0,f}\). If the parameters are not specified in the RUN block, for each one the value of 1 is assumed (for fittype 5, alpha is estimated from the ratio of \(\sum_i \left( N_{\mathrm{bp}}(i)+N_{\mathrm{bm}}(i) \right)\) and \(\sum_i \left( N_{\mathrm{fp}}(i)+N_{\mathrm{fm}}(i) \right)\)). Both, alpha as well as beta can be expressed through a function. Example for alpha with fit parameter number 1:

    alpha 1
    +

    Example for an alpha defined via function number 1:

    +
    alpha fun1
+
    +
    norm (fit type 0)

    Number of the fit parameter that represents the normalization constant \(N_0\) of the histogram; the value of this parameter is given either per nanosecond or per bin (see below). -It is possible to substitute the parameter number by a function here (and only here in a RUN block), for instance to relate \(N_0\)’s of different histograms through an \(\alpha\) +It is possible to substitute the parameter number by a function, for instance to relate \(N_0\)’s of different histograms through an \(\alpha\) parameter. Example for a norm defined by fit parameter number 12:

    norm 12
    @@ -2429,12 +2433,12 @@ In case this cannot be ensured, the parallelization can be disabled by –di
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