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add a rgeHandler tester which allows quickly to test rge-file related handling.

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This commit is contained in:
suter_a 2022-11-09 13:11:30 +01:00
parent 8a8046d28a
commit 58ab025095
29 changed files with 2707 additions and 0 deletions
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40
src/tests/rgeHandler/CMakeLists.txt Normal file
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# - rgeHandlerTest
cmake_minimum_required(VERSION 3.17)
project(rgeHandlerTest VERSION 0.9 LANGUAGES CXX)
#--- check for ROOT -----------------------------------------------------------
find_package(ROOT 6.18 REQUIRED COMPONENTS Gui MathMore Minuit2 XMLParser)
if (ROOT_mathmore_FOUND)
execute_process(COMMAND root-config --bindir OUTPUT_VARIABLE ROOT_BINDIR)
string(STRIP ${ROOT_BINDIR} ROOT_BINDIR)
execute_process(COMMAND root-config --version OUTPUT_VARIABLE ROOT_VERSION)
string(STRIP ${ROOT_VERSION} ROOT_VERSION)
message("-- Found ROOT: ${ROOT_BINDIR} (found version: ${ROOT_VERSION})")
#---Define useful ROOT functions and macros (e.g. ROOT_GENERATE_DICTIONARY)
include(${ROOT_USE_FILE})
endif (ROOT_mathmore_FOUND)
#--- all checks done -> feed config.h -----------------------------------------
set(HAVE_CONFIG_H 1 CACHE INTERNAL "config.h is available")
configure_file(${CMAKE_SOURCE_DIR}/cmake/config.h.in ${CMAKE_CURRENT_BINARY_DIR}/config.h)
add_executable(rgeHandlerTest main.cpp)
target_compile_options(rgeHandlerTest BEFORE PRIVATE "-DHAVE_CONFIG_H")
target_include_directories(rgeHandlerTest
BEFORE PRIVATE
$<BUILD_INTERFACE:${CMAKE_BINARY_DIR}>
$<BUILD_INTERFACE:${CMAKE_SOURCE_DIR}>
$<BUILD_INTERFACE:${CMAKE_SOURCE_DIR}../../include/>
)
target_link_libraries(rgeHandlerTest ${ROOT_LIBRARIES} PRgeHandler)
#--- installation info --------------------------------------------------------
install(
TARGETS
rgeHandlerTest
RUNTIME DESTINATION
bin
)

36
src/tests/rgeHandler/README Normal file
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The rge handler expects a xml-input-file which is used to identify where to
find the necessary rge-files, their names and energies. The relevant xml-tags
are:
<data_path> : path to the place of the rge-files.
The rge-files naming has the structure <pre><energy>.rge, where <pre> is a
sensible string characterizing the material, e.g. 'SiC_E'. The '_E' is needed
by convention. <energy> is the value of the implantation energy in (eV), e.g.
1000. This information has to be provided in the xml-file in the following way:
<rge_fln_pre> : is the <pre> of the rge-file name.
Typically one is working with a set of energies. This energy list can be
provided in two different ways:
(i) as an list of energies
<energy_list>
<energy>1000</energy>
<energy>2000</energy>
<energy>3000</energy>
<energy>4500</energy>
....
</energy_list>
of, in case the energy are equally stepped by
(ii) an energy vector
<energy_vect start="1000" stop="22000" step="1000"/>
This would try to read all rge-files with energies starting from 1000 (eV)
up to 22000 (eV) in steps of 1000 (eV).
See also the file depth_profile_startup.xml in this directory.

6
src/tests/rgeHandler/cmake/config.h.in Normal file
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// config.h
#define PACKAGE_VERSION "@PROJECT_VERSION@"
#define ROOT_VERSION_USED "@ROOT_VERSION@"
#define BUILD_TYPE "@CMAKE_BUILD_TYPE@"

37
src/tests/rgeHandler/depth_profile_startup.xml Normal file
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<?xml version="1.0" encoding="UTF-8"?>
<nonlocal xmlns="http://nemu.web.psi.ch/musrfit/depth_profile">
<comment>
TrimSp information
</comment>
<trim_sp>
<data_path>./trimsp/</data_path>
<rge_fln_pre>SiC_E</rge_fln_pre>
<energy_vect start="1000" stop="22000" step="1000"/>
<!--
<energy_list>
<energy>1000</energy>
<energy>2000</energy>
<energy>3000</energy>
<energy>4000</energy>
<energy>5000</energy>
<energy>6000</energy>
<energy>7000</energy>
<energy>8000</energy>
<energy>9000</energy>
<energy>10000</energy>
<energy>11000</energy>
<energy>12000</energy>
<energy>13000</energy>
<energy>14000</energy>
<energy>15000</energy>
<energy>16000</energy>
<energy>17000</energy>
<energy>18000</energy>
<energy>19000</energy>
<energy>20000</energy>
<energy>21000</energy>
<energy>22000</energy>
</energy_list>
-->
</trim_sp>
</nonlocal>

165
src/tests/rgeHandler/main.cpp Normal file
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/***************************************************************************
main.cpp
Author: Andreas Suter
e-mail: andreas.suter@psi.ch
***************************************************************************/
/***************************************************************************
* Copyright (C) 2007-2022 by Andreas Suter *
* andreas.suter@psi.ch *
* *
* This program is free software; you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation; either version 2 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program; if not, write to the *
* Free Software Foundation, Inc., *
* 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. *
***************************************************************************/
#include <cstring>
#include <iostream>
#ifdef HAVE_CONFIG_H
#include "config.h"
#endif
#include "PRgeHandler.h"
void syntax()
{
std::cout << std::endl;
std::cout << "usage : rgeHandlerTest [options]" << std::endl;
std::cout << " -x, --xml <fln>: path-name of the xml-startup file." << std::endl;
std::cout << " -d, --dump : dump rge-infos." << std::endl;
std::cout << " -s, --set <no> : dump rge-vector number <no>." << std::endl;
std::cout << " -v, --version : rgeHandlerTest version" << std::endl;
std::cout << " -h, --help : this help." << std::endl;
std::cout << std::endl;
}
int main(int argc, char* argv[])
{
if (argc == 1) {
syntax();
return 0;
}
std::string fln("");
bool dump(false);
int set_no = -1;
for (int i=1; i<argc; i++) {
if (!strcmp(argv[i], "-x") || !strcmp(argv[i], "--xml")) {
if (i+1 >= argc) {
std::cout << std::endl;
std::cout << "**ERROR** found -x/ --xml without file name." << std::endl;
std::cout << std::endl;
syntax();
return 1;
}
fln = argv[i+1];
i++;
} else if (!strcmp(argv[i], "-d") || !strcmp(argv[i], "--dump")) {
dump = true;
} else if (!strcmp(argv[i], "-s") || !strcmp(argv[i], "--set")) {
if (i+1 > argc) {
std::cout << std::endl;
std::cout << "**ERROR** found -s/--set without rge set number." << std::endl;
std::cout << std::endl;
syntax();
return 1;
}
try {
set_no = std::stoi(argv[i+1]);
} catch(std::invalid_argument& e) {
std::cout << std::endl;
std::cout << "**ERROR** set number '" << argv[i+1] << "' is not a number." << std::endl;
std::cout << std::endl;
return 3;
} catch(std::out_of_range& e) {
std::cout << std::endl;
std::cout << "**ERROR** set number '" << argv[i+1] << "' is out-of-range." << std::endl;
std::cout << std::endl;
return 3;
} catch(...) {
std::cout << std::endl;
std::cout << "**ERROR** set number '" << argv[i+1] << "' leads to an unexpected error." << std::endl;
std::cout << std::endl;
return 3;
}
i++;
} else if (!strcmp(argv[i], "-v") || !strcmp(argv[i], "--version")) {
std::cout << std::endl;
#ifdef HAVE_CONFIG_H
std::cout << "regHandlerTest Version: " << PACKAGE_VERSION << std::endl;
#else
std::cout << "regHandlerTest Version: unkown." << std::endl;
#endif
std::cout << std::endl;
return 0;
} else if (!strcmp(argv[i], "-h") || !strcmp(argv[i], "--help")) {
syntax();
return 0;
}
}
// read XML startup file
PRgeHandler *rgeHandler = new PRgeHandler(fln);
// check if everything went fine with the startup handler
if (!rgeHandler->IsValid()) {
std::cout << std::endl;
std::cout << std::endl << ">> **ERROR** startup handler too unhappy. Will terminate unfriendly, sorry.";
std::cout << std::endl;
delete rgeHandler;
return 2;
}
if (dump) {
std::cout << std::endl;
std::cout << "RGE info from xml-startup-file " << fln << std::endl;
PRgeDataList list = rgeHandler->GetRgeData();
std::cout << "number of rge data sets: " << list.size() << std::endl;
for (int i=0; i<list.size(); i++) {
std::cout << "rge set #" << i+1 << ": energy: " << list[i].energy << " (eV), no of particles: " << list[i].noOfParticles << std::endl;
}
std::cout << std::endl;
}
if (set_no != -1) {
PRgeDataList list = rgeHandler->GetRgeData();
if (set_no > list.size()) {
std::cout << std::endl;
std::cout << "**ERROR** requested set number " << set_no << " > number of rge-data sets (" << list.size() << ")." << std::endl;
std::cout << std::endl;
delete rgeHandler;
return 4;
} else if (set_no == 0) {
std::cout << std::endl;
std::cout << "**ERROR** rge set-number count start at 1 not 0." << std::endl;
std::cout << std::endl;
delete rgeHandler;
return 4;
}
std::cout << "rge-data set " << set_no << ": energy: " << list[set_no-1].energy << " (eV), no-of-particles: " << list[set_no-1].noOfParticles << std::endl;
std::cout << "depth (nm), ampl, amplNorm" << std::endl;
for (int i=0; i<list[set_no-1].depth.size(); i++) {
std::cout << list[set_no-1].depth[i] << ", " << list[set_no-1].amplitude[i] << ", " << list[set_no-1].nn[i] << std::endl;
}
}
if (rgeHandler) {
delete rgeHandler;
}
return 0;
}

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src/tests/rgeHandler/trimsp/SiC_E1000.rge Normal file
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DEPTH PARTICLES
5. 2232
15. 4507
25. 5856
35. 6893
45. 7682
55. 8150
65. 8489
75. 8580
85. 8104
95. 7183
105. 6352
115. 5151
125. 4022
135. 2843
145. 2046
155. 1316
165. 737
175. 423
185. 195
195. 95
205. 45
215. 14
225. 8
235. 5
245. 0
255. 0
265. 0
275. 0
285. 0
295. 0
305. 0
315. 0
325. 0
335. 0

84
src/tests/rgeHandler/trimsp/SiC_E10000.rge Normal file
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DEPTH PARTICLES
5. 14
15. 26
25. 26
35. 43
45. 51
55. 46
65. 49
75. 54
85. 61
95. 73
105. 69
115. 68
125. 109
135. 102
145. 115
155. 126
165. 135
175. 141
185. 175
195. 176
205. 237
215. 251
225. 281
235. 288
245. 351
255. 379
265. 418
275. 445
285. 487
295. 556
305. 629
315. 712
325. 756
335. 779
345. 984
355. 1063
365. 1202
375. 1339
385. 1480
395. 1647
405. 1875
415. 2170
425. 2225
435. 2555
445. 2777
455. 3026
465. 3412
475. 3638
485. 3966
495. 4422
505. 4582
515. 4839
525. 5108
535. 5088
545. 5077
555. 5002
565. 4822
575. 4364
585. 3804
595. 3160
605. 2517
615. 1852
625. 1327
635. 847
645. 503
655. 284
665. 148
675. 71
685. 23
695. 7
705. 3
715. 0
725. 0
735. 0
745. 0
755. 0
765. 0
775. 0
785. 0
795. 0
805. 0
815. 0
825. 0

89
src/tests/rgeHandler/trimsp/SiC_E11000.rge Normal file
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DEPTH PARTICLES
5. 15
15. 18
25. 24
35. 34
45. 34
55. 41
65. 57
75. 44
85. 47
95. 52
105. 64
115. 66
125. 75
135. 82
145. 84
155. 93
165. 108
175. 109
185. 129
195. 143
205. 135
215. 164
225. 169
235. 187
245. 247
255. 206
265. 268
275. 302
285. 330
295. 349
305. 391
315. 441
325. 462
335. 521
345. 581
355. 634
365. 769
375. 809
385. 898
395. 1000
405. 1005
415. 1138
425. 1377
435. 1568
445. 1689
455. 1851
465. 2002
475. 2319
485. 2528
495. 2814
505. 3079
515. 3331
525. 3632
535. 3823
545. 4207
555. 4445
565. 4739
575. 4832
585. 4884
595. 4913
605. 4808
615. 4808
625. 4276
635. 3826
645. 3181
655. 2588
665. 2040
675. 1436
685. 922
695. 610
705. 331
715. 195
725. 71
735. 34
745. 15
755. 3
765. 2
775. 1
785. 0
795. 0
805. 0
815. 0
825. 0
835. 0
845. 0
855. 0
865. 0
875. 0

95
src/tests/rgeHandler/trimsp/SiC_E12000.rge Normal file
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DEPTH PARTICLES
5. 6
15. 22
25. 26
35. 33
45. 28
55. 41
65. 33
75. 45
85. 43
95. 51
105. 56
115. 46
125. 62
135. 65
145. 63
155. 66
165. 71
175. 71
185. 98
195. 85
205. 102
215. 113
225. 125
235. 126
245. 146
255. 164
265. 149
275. 213
285. 191
295. 252
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325. 304
335. 368
345. 363
355. 421
365. 458
375. 513
385. 519
395. 612
405. 676
415. 759
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435. 872
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455. 1131
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525. 2266
535. 2468
545. 2677
555. 2984
565. 3319
575. 3453
585. 3753
595. 4112
605. 4373
615. 4598
625. 4655
635. 4913
645. 4883
655. 4748
665. 4506
675. 4198
685. 3865
695. 3201
705. 2644
715. 2134
725. 1623
735. 1127
745. 709
755. 387
765. 244
775. 132
785. 41
795. 26
805. 3
815. 2
825. 0
835. 0
845. 0
855. 0
865. 0
875. 0
885. 0
895. 0
905. 0
915. 0
925. 0
935. 0

101
src/tests/rgeHandler/trimsp/SiC_E13000.rge Normal file
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DEPTH PARTICLES
5. 5
15. 13
25. 16
35. 21
45. 18
55. 32
65. 33
75. 36
85. 32
95. 38
105. 47
115. 36
125. 47
135. 49
145. 39
155. 58
165. 63
175. 64
185. 72
195. 83
205. 89
215. 67
225. 77
235. 107
245. 126
255. 100
265. 117
275. 151
285. 129
295. 143
305. 186
315. 168
325. 220
335. 225
345. 238
355. 272
365. 316
375. 294
385. 337
395. 364
405. 449
415. 489
425. 533
435. 578
445. 598
455. 640
465. 794
475. 849
485. 877
495. 1037
505. 1099
515. 1123
525. 1341
535. 1476
545. 1685
555. 1734
565. 1985
575. 2189
585. 2368
595. 2593
605. 2928
615. 3221
625. 3372
635. 3720
645. 3879
655. 4145
665. 4270
675. 4529
685. 4704
695. 4758
705. 4638
715. 4435
725. 4230
735. 3932
745. 3439
755. 2931
765. 2277
775. 1787
785. 1300
795. 928
805. 586
815. 317
825. 154
835. 85
845. 33
855. 19
865. 6
875. 2
885. 0
895. 0
905. 0
915. 0
925. 0
935. 0
945. 0
955. 0
965. 0
975. 0
985. 0
995. 0

108
src/tests/rgeHandler/trimsp/SiC_E14000.rge Normal file
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DEPTH PARTICLES
5. 3
15. 10
25. 14
35. 14
45. 16
55. 18
65. 24
75. 28
85. 26
95. 32
105. 37
115. 33
125. 46
135. 35
145. 36
155. 49
165. 34
175. 57
185. 40
195. 47
205. 65
215. 54
225. 63
235. 97
245. 81
255. 88
265. 88
275. 90
285. 108
295. 108
305. 124
315. 142
325. 142
335. 148
345. 146
355. 173
365. 200
375. 185
385. 225
395. 224
405. 260
415. 295
425. 317
435. 341
445. 402
455. 389
465. 487
475. 486
485. 539
495. 613
505. 660
515. 731
525. 820
535. 881
545. 986
555. 1100
565. 1214
575. 1315
585. 1401
595. 1606
605. 1743
615. 1894
625. 2200
635. 2252
645. 2575
655. 2719
665. 3052
675. 3190
685. 3355
695. 3751
705. 3969
715. 4117
725. 4281
735. 4504
745. 4528
755. 4614
765. 4492
775. 4402
785. 4031
795. 3639
805. 3198
815. 2603
825. 2049
835. 1584
845. 1128
855. 810
865. 442
875. 272
885. 134
895. 73
905. 31
915. 10
925. 3
935. 3
945. 0
955. 0
965. 0
975. 0
985. 0
995. 0
1005. 0
1015. 0
1025. 0
1035. 0
1045. 0
1055. 0
1065. 0

114
src/tests/rgeHandler/trimsp/SiC_E15000.rge Normal file
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@ -0,0 +1,114 @@
DEPTH PARTICLES
5. 5
15. 8
25. 9
35. 23
45. 21
55. 17
65. 22
75. 23
85. 19
95. 23
105. 26
115. 24
125. 34
135. 29
145. 34
155. 42
165. 44
175. 34
185. 39
195. 38
205. 47
215. 55
225. 60
235. 42
245. 52
255. 60
265. 65
275. 59
285. 72
295. 83
305. 90
315. 89
325. 112
335. 114
345. 124
355. 130
365. 139
375. 162
385. 149
395. 166
405. 183
415. 208
425. 232
435. 228
445. 255
455. 275
465. 323
475. 342
485. 348
495. 398
505. 433
515. 439
525. 503
535. 587
545. 603
555. 684
565. 739
575. 740
585. 904
595. 995
605. 1080
615. 1154
625. 1302
635. 1434
645. 1553
655. 1757
665. 1775
675. 1991
685. 2184
695. 2402
705. 2610
715. 2849
725. 3173
735. 3200
745. 3427
755. 3680
765. 3909
775. 4097
785. 4282
795. 4505
805. 4390
815. 4362
825. 4304
835. 4022
845. 3771
855. 3378
865. 2950
875. 2454
885. 1924
895. 1417
905. 982
915. 685
925. 388
935. 247
945. 141
955. 51
965. 27
975. 13
985. 5
995. 1
1005. 0
1015. 0
1025. 0
1035. 0
1045. 0
1055. 0
1065. 0
1075. 0
1085. 0
1095. 0
1105. 0
1115. 0
1125. 0

120
src/tests/rgeHandler/trimsp/SiC_E16000.rge Normal file
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DEPTH PARTICLES
5. 4
15. 9
25. 11
35. 9
45. 14
55. 14
65. 17
75. 12
85. 26
95. 24
105. 21
115. 29
125. 19
135. 16
145. 22
155. 35
165. 37
175. 41
185. 36
195. 40
205. 30
215. 35
225. 36
235. 51
245. 51
255. 41
265. 51
275. 73
285. 59
295. 66
305. 57
315. 69
325. 81
335. 66
345. 72
355. 84
365. 119
375. 116
385. 112
395. 131
405. 137
415. 142
425. 129
435. 173
445. 169
455. 200
465. 209
475. 218
485. 235
495. 238
505. 288
515. 332
525. 343
535. 337
545. 387
555. 354
565. 452
575. 486
585. 541
595. 599
605. 627
615. 666
625. 793
635. 827
645. 977
655. 975
665. 1078
675. 1202
685. 1317
695. 1450
705. 1689
715. 1673
725. 2013
735. 1973
745. 2244
755. 2338
765. 2639
775. 2827
785. 3077
795. 3365
805. 3533
815. 3742
825. 3924
835. 4082
845. 4203
855. 4366
865. 4341
875. 4282
885. 4036
895. 3937
905. 3621
915. 3183
925. 2788
935. 2285
945. 1833
955. 1436
965. 955
975. 656
985. 383
995. 276
1005. 132
1015. 69
1025. 36
1035. 10
1045. 5
1055. 2
1065. 0
1075. 0
1085. 2
1095. 0
1105. 0
1115. 0
1125. 0
1135. 0
1145. 0
1155. 0
1165. 0
1175. 0
1185. 0

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DEPTH PARTICLES
5. 1
15. 7
25. 10
35. 12
45. 17
55. 14
65. 10
75. 16
85. 17
95. 16
105. 19
115. 21
125. 13
135. 19
145. 26
155. 16
165. 24
175. 18
185. 31
195. 26
205. 29
215. 34
225. 39
235. 31
245. 28
255. 42
265. 27
275. 31
285. 39
295. 49
305. 53
315. 50
325. 70
335. 77
345. 61
355. 69
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134
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140
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41
src/tests/rgeHandler/trimsp/SiC_E2000.rge Normal file
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145
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153
src/tests/rgeHandler/trimsp/SiC_E21000.rge Normal file
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160
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167
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175
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51
src/tests/rgeHandler/trimsp/SiC_E4000.rge Normal file
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57
src/tests/rgeHandler/trimsp/SiC_E5000.rge Normal file
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61
src/tests/rgeHandler/trimsp/SiC_E6000.rge Normal file
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68
src/tests/rgeHandler/trimsp/SiC_E7000.rge Normal file
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73
src/tests/rgeHandler/trimsp/SiC_E8000.rge Normal file
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79
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