From 513144997e527fe497ed300875868d40cf9ee56c Mon Sep 17 00:00:00 2001 From: Andreas Suter Date: Fri, 31 Jan 2020 07:50:50 +0100 Subject: [PATCH] updated docu --- doc/html/_sources/setup-standard.txt | 30 +++++++++++++++++++++---- doc/html/genindex.html | 2 +- doc/html/index.html | 2 +- doc/html/objects.inv | Bin 1928 -> 1957 bytes doc/html/search.html | 2 +- doc/html/searchindex.js | 2 +- doc/html/setup-standard.html | 32 ++++++++++++++++++++++----- 7 files changed, 56 insertions(+), 14 deletions(-) diff --git a/doc/html/_sources/setup-standard.txt b/doc/html/_sources/setup-standard.txt index 671e4477..831abb14 100644 --- a/doc/html/_sources/setup-standard.txt +++ b/doc/html/_sources/setup-standard.txt @@ -770,10 +770,10 @@ and ``C:\cygwin\bin\bash.exe`` so that they are executed with administrator priv Mac OS X / macOS ---------------- -.. warning:: +.. note:: - 2019-10-10: macOS 10.15 Catalina: ``macport``/``fink``/``homebrew`` and hence ``musrfit`` are not yet ready for - this version of macOS. Likely to be ready by end of November 2019. + macOS Catalina is slightly different in some aspects, so if it happens that you have it installed, please + first check :ref:`note-on-catalina` before you proceed. .. _MacPorts: https://www.macports.org/ .. _Fink: http://www.finkproject.org/ @@ -866,7 +866,7 @@ Installation of NeXus requirements (optional) .. code-block:: bash - $ sudo port -v install hdf5 + $ sudo port -v install hdf4 hdf5 **Only NeXus Version ≥ 4.4 is support!** @@ -997,6 +997,26 @@ After this you will need to "execute" ``.profile`` before proceeding: $ source $HOME/.profile +.. _note-on-catalina: + +Notes on macOS Catalina +^^^^^^^^^^^^^^^^^^^^^^^ + +Apple introduced a couple of changes on macOS Catalina compared to its previous versions of macOS which might +be a stumble block. Here I **very** briefly try to add some notes in order to get a smooth installation for +``musrfit``. + +1. You should switch from the bash to the zsh. Please check, e.g. `Moving to zsh `_. +2. Instead of ``.profile`` you will need to setup a ``.zprofile``. +3. macports: currently there is a little nuisance with the ``fftw-3`` port. My bug report is already out since a while + but no proper fix is available. The workaround to get it right is to install the port from source which is done by + + .. code-block:: bash + + $ port -s install fftw-3 + + If you fail to do so, you might trigger a crash in the Fourier transform for 2^N, N=12. + .. index:: fink Requirements (Fink) @@ -1247,6 +1267,8 @@ web-page: `musrfit at bitbucket`_. .. index:: musrfit-build-cmake-macos + + musrfit build with cmake ^^^^^^^^^^^^^^^^^^^^^^^^ diff --git a/doc/html/genindex.html b/doc/html/genindex.html index c063e8ba..dde6cea8 100644 --- a/doc/html/genindex.html +++ b/doc/html/genindex.html @@ -979,7 +979,7 @@
© Copyright 2019, Andreas Suter. - Last updated on Nov 11, 2019. + Last updated on Jan 30, 2020. Created using Sphinx 1.2.3.
diff --git a/doc/html/index.html b/doc/html/index.html index 20ed2dae..3643b80e 100644 --- a/doc/html/index.html +++ b/doc/html/index.html @@ -185,7 +185,7 @@
© Copyright 2019, Andreas Suter. - Last updated on Nov 11, 2019. + Last updated on Jan 30, 2020. Created using Sphinx 1.2.3.
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© Copyright 2019, Andreas Suter. - Last updated on Nov 11, 2019. + Last updated on Jan 30, 2020. Created using Sphinx 1.2.3.
diff --git a/doc/html/searchindex.js b/doc/html/searchindex.js index c06375d0..8a1ca598 100644 --- a/doc/html/searchindex.js +++ b/doc/html/searchindex.js @@ -1 +1 @@ -Search.setIndex({filenames:["acknowledgement","any2many","bugtracking","cite","index","msr2data","mupp","musr-root","musredit","setup-dks","tutorial","user-libs","setup-standard","user-manual"],titles:["Acknowledgements","any2many - a Universal \u03bcSR-file-format converter","Bugtracking","How to Cite musrfit?","Welcome to the musrfit documentation!","msr2data - A Program for Automatically Processing Multiple musrfit msr Files","mupp - \u03bcSR Parameter Plotter","MusrRoot - an Extensible Open File Format for \u03bcSR","musredit: the GUI Based Interface to musrfit","Setting up musrfit / DKS: High Speed Fitting with GPU’s","Tutorial for musrfit","Documentation of user libs (user functions)","Setting up musrfit on Different Platforms","User 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\ No newline at end of file diff --git a/doc/html/setup-standard.html b/doc/html/setup-standard.html index 640b93f9..8876b127 100644 --- a/doc/html/setup-standard.html +++ b/doc/html/setup-standard.html @@ -684,10 +684,10 @@ and C:\cygwin\bin\bash.exe

Mac OS X / macOS

-
-

Warning

-

2019-10-10: macOS 10.15 Catalina: macport/fink/homebrew and hence musrfit are not yet ready for -this version of macOS. Likely to be ready by end of November 2019.

+
+

Note

+

macOS Catalina is slightly different in some aspects, so if it happens that you have it installed, please +first check Notes on macOS Catalina before you proceed.

With Mac OS X / macOS the situation is up to some extent similar like on MS Windows but still different since Mac OS X is a UNIX system. The similarity is that also on OS X a helping framework — either MacPorts @@ -761,7 +761,7 @@ please change over to musredit

Installation of NeXus requirements (optional)

Only if musrfit should support reading data files in the NeXus format the further required packages are set up:

-
$ sudo port -v install hdf5
+
$ sudo port -v install hdf4 hdf5
 

 

 
Only NeXus Version ≥ 4.4 is support!

@@ -872,6 +872,25 @@ launchctl setenv LD_LIBRARY_PATH $LD_LIBRARY_PATH
+
+

Notes on macOS Catalina

+

Apple introduced a couple of changes on macOS Catalina compared to its previous versions of macOS which might +be a stumble block. Here I very briefly try to add some notes in order to get a smooth installation for +musrfit.

+
    +

  1. You should switch from the bash to the zsh. Please check, e.g. Moving to zsh.

    +
    2. +

  2. Instead of .profile you will need to setup a .zprofile.

    +
    3. +

  3. macports: currently there is a little nuisance with the fftw-3 port. My bug report is already out since a while +but no proper fix is available. The workaround to get it right is to install the port from source which is done by

    +
    $ port -s install fftw-3
+
    +
    +

    If you fail to do so, you might trigger a crash in the Fourier transform for 2^N, N=12.

    +
    4. +
+

Requirements (Fink)

@@ -1230,6 +1249,7 @@ $ musrview test-histo-ROOT-NPP.msr
  • Requirements (MacPorts)
  • Requirements (Fink)
      @@ -1296,7 +1316,7 @@ $ musrview test-histo-ROOT-NPP.msr
    • © Copyright 2019, Andreas Suter. - Last updated on Oct 10, 2019. + Last updated on Jan 30, 2020. Created using Sphinx 1.2.3.