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if multiple SAVE are present in the COMMAND block, append MINUIT2.OUTPUT file. Added docu for PRINT_LEVEL (MUSR-244).

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suter_a 2012-12-11 09:56:17 +00:00
parent bcb9bf8ebd
commit 3fe4875267
16 changed files with 94 additions and 64 deletions
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2
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@ -36,6 +36,8 @@ FIXED 2012-09-23 fixed wrong chisq output in musrview if expected chisq is
present.
FIXED 2012-05-30 fixed RRF bug in single histo plotting.
FIXED 2012-05-18 fixed wrong forward/backward tag for ROOT-PPC (MUSR-215)
CHANGED 2012-12-11 if multiple SAVE are present in the COMMAND block, append
MINUIT2.OUTPUT file. Added docu for PRINT_LEVEL (MUSR-244).
CHANGED 2012-11-19 replaced hard coded gyromagnetic ratio of the muon in the
whole code.
CHANGED 2012-11-09 when converting to WKM, take the beamline tag to decide

9
doc/examples/test-histo-MusrRoot.msr
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@ -97,10 +97,11 @@ SAVE
###############################################################
FOURIER
units Gauss # units either 'Gauss', 'MHz', or 'Mc/s'
fourier_power 11
apodization MEDIUM # NONE, WEAK, MEDIUM, STRONG
plot POWER # REAL, IMAG, REAL_AND_IMAG, POWER, PHASE
range 0 100
fourier_power 10
apodization STRONG # NONE, WEAK, MEDIUM, STRONG
plot REAL # REAL, IMAG, REAL_AND_IMAG, POWER, PHASE
dc-corrected true
phase par7
###############################################################
PLOT 0 (single histo plot)

10
doc/examples/test-histo-ROOT-NPP.msr
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@ -25,15 +25,17 @@ norm 5
backgr.fit 6
lifetimecorrection
map 0 0 0 0 0 0 0 0 0 0
forward 1
forward 1
data 3419 66000
t0 3419
t0 3419.0
fit 0.1 10
packing 250
###############################################################
COMMANDS
PRINT_LEVEL 3
MINIMIZE
SAVE
MINOS
SAVE
@ -43,5 +45,5 @@ runs 1
range 0 8 -0.3 0.3
###############################################################
STATISTIC --- 2011-02-06 14:52:54
chisq = 248.83532814099809, NDF = 197, chisq/NDF = 1.2631234931015132
STATISTIC --- 2012-12-11 07:58:13
chisq = 248.8, NDF = 197, chisq/NDF = 1.263124

8
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@ -1,6 +1,6 @@
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@ -192,7 +192,7 @@ pre {
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@ -420,7 +420,7 @@ An example XML file looks as follows:
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@ -468,7 +468,7 @@ An example XML file looks as follows:
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@ -225,7 +225,7 @@ The parameters are: <ol>
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@ -273,7 +273,7 @@ The parameters are: <ol>
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@ -1,6 +1,6 @@
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@ -349,7 +349,7 @@ For reporting bugs or requesting new features and improvements please use the <a
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@ -419,7 +419,7 @@ For reporting bugs or requesting new features and improvements please use the <a
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doc/html/user/MUSR/MusrFit.html
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@ -1,6 +1,6 @@
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@ -980,6 +980,17 @@ A typical example could look like:<pre>
<a name="ScaleNzero"></a>
The last accepted command in the COMMAND block is <strong>SCALE_N0_BKG TRUE | FALSE</strong>. This command is only used in conjunction with single-histogram fits. The default is <strong>SCALE_N0_BKG TRUE</strong> which will result in a scaling of <i>N</i>(<i>t</i>) such that it is given in ns<sup>-1</sup>, whereas with <strong>SCALE_N0_BKG FALSE</strong> no scaling is performed and <i>N</i>(<i>t</i>) will be given in bin<sup>-1</sup>. If the command is not present at all, it will be interpreted as if <strong>SCALE_N0_BKG TRUE</strong> was present.
<p></p>
<a name="PrintLevel"></a>
For debug purposes it is possible to force MINUIT2 to print out additional informations. The COMMAND block command is <strong>PRINT_LEVEL &lt;n&gt;</strong>, where <strong>&lt;n&gt;</strong> can have the values 0,1,2, or 3. A typical example could look like:<pre>
COMMANDS
MIGRAD
SAVE
PRINT&#95;LEVEL 3
MINOS
SAVE
</pre>
Here the <code>MINOS</code> command will print out lot of additional information to the standard output. Notice there are 2 <code>SAVE</code> commands here. This will write the result of <code>MIGRAD</code> to the <code>MINUIT2.OUTPUT</code> file and at the end <em>append</em> the <code>MINOS</code> results to this file.
<p></p>
<a name="TheFourierBlock"></a>
<h2><a name="A_4.7_The_FOURIER_Block"></a> 4.7 The FOURIER Block </h2>
The Fourier transform is done and the results are plotted within <code>musrview</code> &mdash;as input data the actual data shown in <code>musrview</code> is used. In the FOURIER block of the msr file all necessary parameters for calculating and presenting the Fourier transform of the data specified in the <a href="#ThePlotBlock" class="foswikiCurrentTopicLink">PLOT block</a> is given. If the FOURIER block is not present in the msr file, either the parameters set in the <a href="#MusrfitStartupXml" class="foswikiCurrentTopicLink">XML startup file</a> or the system defaults are taken when the Fourier transform is performed. The block starts with the FOURIER keyword and may contain the following entries on the successive lines: <dl>
@ -1433,7 +1444,7 @@ For reporting bugs or requesting new features and improvements please use the <a
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@ -1503,7 +1514,7 @@ For reporting bugs or requesting new features and improvements please use the <a
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@ -190,7 +190,7 @@ pre {
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10
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@ -332,7 +332,7 @@ musrview test-histo-ROOT-NPP.msr
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Notes
<p></p>
<a name="FootNote1note"></a><span class="FootNoteLabel"><a href="MusrFitSetup.html#FootNote1text" class="foswikiCurrentWebHomeLink"> <strong>1</strong> </a></span>: <span class="FootNote">In case only a single user is working at the machine it might be considerable to change the ownership of the <code>ROOT</code> folder so that the user has easy write access to this directory: <!-- verbatim2606 --></span>
<a name="FootNote1note"></a><span class="FootNoteLabel"><a href="MusrFitSetup.html#FootNote1text" class="foswikiCurrentWebHomeLink"> <strong>1</strong> </a></span>: <span class="FootNote">In case only a single user is working at the machine it might be considerable to change the ownership of the <code>ROOT</code> folder so that the user has easy write access to this directory: <!-- verbatim2122 --></span>
<p></p>
<a name="FootNote2note"></a><span class="FootNoteLabel"><a href="MusrFitSetup.html#FootNote2text" class="foswikiCurrentWebHomeLink"> <strong>2</strong> </a></span>: <span class="FootNote"> When using <code>GCC</code> &#8805; 4.2 please make sure that the environment variables <strong>USE_PARALLEL_MINUIT2</strong> and <strong>USE_OPENMP</strong> are <em>not</em> set! Otherwise <code>MINUIT2</code> will be compiled with parallelization support and cannot be used together with <code>musrfit</code> afterwards since the <code>musrfit</code> code is <em>not</em> fully thread-safe! When compiled with <code>GCC</code> &#8805; 4.2 <code>musrfit</code> itself will parallelize the &chi;<sup>2</sup> calculation.</span>
<p></p>
@ -821,7 +821,7 @@ musrview test-histo-ROOT-NPP.msr
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@ -869,7 +869,7 @@ musrview test-histo-ROOT-NPP.msr
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10
doc/html/user/MUSR/MusrGui.html
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@ -1,6 +1,6 @@
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@ -8,7 +8,7 @@
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@ -324,7 +324,7 @@ For reporting bugs or requesting new features and improvements please use the <a
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@ -346,7 +346,7 @@ For reporting bugs or requesting new features and improvements please use the <a
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@ -394,7 +394,7 @@ For reporting bugs or requesting new features and improvements please use the <a
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8
doc/html/user/MUSR/QuickStart.html
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@ -1,6 +1,6 @@
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@ -8,7 +8,7 @@
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@ -280,7 +280,7 @@ RUN 2008/lem08&#95;his&#95;8472 MUE4 PSI ROOT-NPP (name beamline institute dat
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</div></div><div class="patternInfo"><span class="patternRevInfo">Topic revision: 10 Jul 2011, wojek</span></div>
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@ -328,7 +328,7 @@ RUN 2008/lem08&#95;his&#95;8472 MUE4 PSI ROOT-NPP (name beamline institute dat
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10
doc/html/user/MUSR/TutorialSingleHisto.html
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@ -1,6 +1,6 @@
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@ -281,7 +281,7 @@ This page only summarizes the very basic features and options of the programs co
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@ -303,7 +303,7 @@ This page only summarizes the very basic features and options of the programs co
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@ -351,7 +351,7 @@ This page only summarizes the very basic features and options of the programs co
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12
doc/html/user/MUSR/WebHome.html
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@ -1,6 +1,6 @@
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@ -8,7 +8,7 @@
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@ -133,7 +133,7 @@ pre {
</li> <li> <a href="MusrFitAcknowledgements.html">Acknowledgements</a>
</li></ul>
<p></p>
-- <a href="http://lmu.web.psi.ch/lem/group.html" target="_top">AS</a> &amp; <a href="http://www.fsf.org/register_form?referrer=8369" target="_top">BMW</a> - last update Nov 19, 2012 </div>
-- <a href="http://lmu.web.psi.ch/lem/group.html" target="_top">AS</a> &amp; <a href="http://www.fsf.org/register_form?referrer=8369" target="_top">BMW</a> - last update Dec 11, 2012 </div>
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@ -156,9 +156,9 @@ pre {
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</div></div><div class="patternInfo"><span class="patternRevInfo">Topic revision: 19 Nov 2012, <a href="https://intranet.psi.ch/Main/AndreasSuter">AndreasSuter</a></span></div>
</div></div><div class="patternInfo"><span class="patternRevInfo">Topic revision: 11 Dec 2012, <a href="https://intranet.psi.ch/Main/AndreasSuter">AndreasSuter</a></span></div>
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@ -204,7 +204,7 @@ pre {
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<p></p>

20
src/classes/PFitter.cpp
View File

@ -229,6 +229,7 @@ Bool_t PFitter::DoFit()
}
// walk through the command list and execute them
Bool_t firstSave = true;
for (UInt_t i=0; i<fCmdList.size(); i++) {
switch (fCmdList[i].first) {
case PMN_INTERACTIVE:
@ -274,7 +275,9 @@ Bool_t PFitter::DoFit()
status = ExecuteRestore();
break;
case PMN_SAVE:
status = ExecuteSave();
status = ExecuteSave(firstSave);
if (firstSave)
firstSave = false;
break;
case PMN_SCAN:
status = ExecuteScan();
@ -1510,9 +1513,11 @@ Bool_t PFitter::ExecuteScan()
/**
* <p>Execute the save command.
*
* \param firstSave flag indication if this is the first save call and hence write a fresh MINUIT2.OUTPUT
*
* <b>return:</b> true if the valid minuit2 state is found, otherwise returns false.
*/
Bool_t PFitter::ExecuteSave()
Bool_t PFitter::ExecuteSave(Bool_t firstSave)
{
// if any minimization was done, otherwise get out immediately
if (!fFcnMin) {
@ -1593,7 +1598,11 @@ Bool_t PFitter::ExecuteSave()
ofstream fout;
// open minuit2 output file
fout.open("MINUIT2.OUTPUT", iostream::out);
if (firstSave)
fout.open("MINUIT2.OUTPUT", iostream::out);
else
fout.open("MINUIT2.OUTPUT", iostream::out | iostream::app);
if (!fout.is_open()) {
cerr << endl << "**ERROR** PFitter::ExecuteSave() couldn't open MINUIT2.OUTPUT file";
cerr << endl;
@ -1826,6 +1835,11 @@ Bool_t PFitter::ExecuteSave()
} else {
fout << endl << " no correlation coefficients available";
}
fout << endl;
fout << endl << "*************************************************************************";
fout << endl << " DONE ";
fout << endl << "*************************************************************************";
fout << endl << endl;
// close MINUIT2.OUTPUT file
fout.close();

2
src/include/PFitter.h
View File

@ -124,7 +124,7 @@ class PFitter
Bool_t ExecuteRelease(UInt_t lineNo);
Bool_t ExecuteRestore();
Bool_t ExecuteScan();
Bool_t ExecuteSave();
Bool_t ExecuteSave(Bool_t first);
Bool_t ExecuteSimplex();
};