mlog2db handles optional parameters more flexible and supports comments in the parameter block
This commit is contained in:
Bastian M. Wojek
parent
0f661ce441
commit
3c91c88bb0
189
src/external/scripts/mlog2db
vendored
189
src/external/scripts/mlog2db
vendored
@ -107,7 +107,7 @@ else
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done
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# search for the parameter including the "]"
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for (( i=0; i<="$#"; i++ ))
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for (( i=1; i<="$#"; i++ ))
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do
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RIGHTBRACKET=$( eval echo \$$i )
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if [ "${RIGHTBRACKET:(-1)}" == "]" ]; then
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@ -126,12 +126,8 @@ else
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fi
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EXTENSION=$( eval echo \$$((RIGHTBRACKET + 1)) )
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OPT_PAR_ONE=$( eval echo \$$((RIGHTBRACKET + 2)) )
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OPT_PAR_TWO=$( eval echo \$$((RIGHTBRACKET + 3)) )
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OPT_PAR_THREE=$( eval echo \$$((RIGHTBRACKET + 4)) )
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OPT_PAR_FOUR=$( eval echo \$$((RIGHTBRACKET + 5)) )
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OPT_PAR_FIVE=$( eval echo \$$((RIGHTBRACKET + 6)) )
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OPT_PAR_SIX=$( eval echo \$$((RIGHTBRACKET + 7)) )
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FIRST_OPT_PAR=$((RIGHTBRACKET + 2))
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LAST_OPT_PAR=$#
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RUNLIST_USED=0
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NUM_OF_IND_VAR=1 # 1 for the run number
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@ -155,12 +151,8 @@ else
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EXTENSION=$3
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OPT_PAR_ONE=$4
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OPT_PAR_TWO=$5
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OPT_PAR_THREE=$6
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OPT_PAR_FOUR=$7
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OPT_PAR_FIVE=$8
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OPT_PAR_SIX=$9
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FIRST_OPT_PAR=4
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LAST_OPT_PAR=$#
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RUNLIST_USED=0
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NUM_OF_IND_VAR=1 # 1 for the run number
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@ -170,12 +162,8 @@ else
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LASTRUN=0 # RUNARRAY-index of the last run
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EXTENSION=$2
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OPT_PAR_ONE=$3
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OPT_PAR_TWO=$4
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OPT_PAR_THREE=$5
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OPT_PAR_FOUR=$6
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OPT_PAR_FIVE=$7
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OPT_PAR_SIX=$8
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FIRST_OPT_PAR=3
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LAST_OPT_PAR=$#
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RUNLIST_USED=0
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NUM_OF_IND_VAR=1 # 1 for the run number
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@ -204,30 +192,21 @@ else
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LASTRUN=$(( ${#RUNARRAY[@]} - 1 )) # RUNARRAY-index of the last run
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EXTENSION=$2
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OPT_PAR_ONE=$3
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OPT_PAR_TWO=$4
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OPT_PAR_THREE=$5
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OPT_PAR_FOUR=$6
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OPT_PAR_FIVE=$7
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OPT_PAR_SIX=$8
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FIRST_OPT_PAR=3
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LAST_OPT_PAR=$#
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RUNLIST_USED=1
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fi
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fi
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# Check if fitting should be done
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if [ "${OPT_PAR_ONE:0:3}" == "fit" ]; then
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TEMP=${OPT_PAR_ONE:4}
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elif [ "${OPT_PAR_TWO:0:3}" == "fit" ]; then
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TEMP=${OPT_PAR_TWO:4}
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elif [ "${OPT_PAR_THREE:0:3}" == "fit" ]; then
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TEMP=${OPT_PAR_THREE:4}
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elif [ "${OPT_PAR_FOUR:0:3}" == "fit" ]; then
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TEMP=${OPT_PAR_FOUR:4}
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elif [ "${OPT_PAR_FIVE:0:3}" == "fit" ]; then
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TEMP=${OPT_PAR_FIVE:4}
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elif [ "${OPT_PAR_SIX:0:3}" == "fit" ]; then
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TEMP=${OPT_PAR_SIX:4}
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TEMP=""
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for PAR in "$@"
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do
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if [ "${PAR:0:3}" == "fit" ]; then
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TEMP=${PAR:4}
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break
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fi
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done
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if [ "$TEMP" != "" ]; then # runs should be fitted using musrfit
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@ -269,6 +248,12 @@ else
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if(NR==1) print nextcount > nextinput
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else if($1 == "RUN") {
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if (substr(count,1,1) != "_"){ count = sprintf("_%04u", count); nextcount = sprintf("_%04u", nextcount);}
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if ($2 !~ count){
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print " "
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print ">> mlog2db: ATTENTION The run-numbers in the filename and the RUN-block of the template file do not match!"
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print ">> mlog2db: The run-number substitution is most likely going wrong!"
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print " "
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}
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sub(count, nextcount, $0);
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print $0 >> nextinput
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}
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@ -276,11 +261,18 @@ else
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}' $TEMPLATE
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fi
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if [ "${OPT_PAR_ONE}" == "-k" ] || [ "${OPT_PAR_TWO}" == "-k" ] || [ "${OPT_PAR_THREE}" == "-k" ] || [ "${OPT_PAR_FOUR}" == "-k" ] \
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|| [ "${OPT_PAR_FIVE}" == "-k" ] || [ "${OPT_PAR_SIX}" == "-k" ]; then
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MUSRFITPARAM=""
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for PAR in "$@"
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do
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if [ "$PAR" == "-k" ]; then
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MUSRFITPARAM="-k"
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break
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fi
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done
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echo
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echo ">> mlog2db: musrfit $COUNT$EXTENSION.msr $MUSRFITPARAM"
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echo
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musrfit $COUNT$EXTENSION.msr $MUSRFITPARAM # the fit
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if [ "$q" -ne "$LASTRUN" ]; then # create the next musrfit input file if not the last specified run was fitted already
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@ -288,6 +280,12 @@ else
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if(NR==1) print nextcount > nextinput
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else if($1 == "RUN") {
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if (substr(count,1,1) != "_"){ count = sprintf("_%04u", count); nextcount = sprintf("_%04u", nextcount);}
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if ($2 !~ count){
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print " "
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print ">> mlog2db: ATTENTION The run-numbers in the filename and the RUN-block of the file do not match!"
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print ">> mlog2db: The run-number substitution is most likely going wrong!"
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print " "
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}
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sub(count, nextcount, $0);
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print $0 >> nextinput
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}
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@ -304,8 +302,16 @@ else
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fi
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# if the "nosummary"-option is not set and the summary files are present, get some information from there
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if [ "${OPT_PAR_ONE}" != "nosummary" ] && [ "${OPT_PAR_TWO}" != "nosummary" ] && [ "${OPT_PAR_THREE}" != "nosummary" ] \
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&& [ "${OPT_PAR_FOUR}" != "nosummary" ] && [ "${OPT_PAR_FIVE}" != "nosummary" ] && [ "${OPT_PAR_SIX}" != "nosummary" ]; then
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NOSUMMARY=0
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for PAR in "$@"
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do
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if [ "$PAR" == "nosummary" ]; then
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NOSUMMARY=1
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break
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fi
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done
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if [ "$NOSUMMARY" -eq 0 ]; then
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if [ -d $SUMMDIR ]; then
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# extract runnumber from mlog-file
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@ -342,71 +348,52 @@ else
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fi
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fi
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# put together all data to db-format and write it to the file
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awk -v optPARone=$OPT_PAR_ONE -v optPARtwo=$OPT_PAR_TWO -v optPARthree=$OPT_PAR_THREE -v optPARfour=$OPT_PAR_FOUR \
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-v optPARfive=$OPT_PAR_FIVE -v optPARsix=$OPT_PAR_SIX -v runList=$RUNLIST_USED -v numIndVar=$NUM_OF_IND_VAR '{
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# determine the output-file
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OUTFILE="out.db"
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outfile="out.db"
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if(optPARone ~ /^-o/){
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if(optPARone == "-o"){
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if(optPARtwo != "noheader" && optPARtwo != "nosummary" && optPARtwo !~ /^fit/ && optPARtwo != "-k"){
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outfile = optPARtwo
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}
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else if(NR==1) print ">> mlog2db: You did not specify an output file! The default one (out.db) will be used."
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}
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else outfile = substr(optPARone,3)
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}
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else if(optPARtwo ~ /^-o/){
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if(optPARtwo == "-o"){
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if(optPARthree != "noheader" && optPARthree != "nosummary" && optPARthree !~ /^fit/ && optPARthree != "-k"){
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outfile = optPARthree
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}
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else if(NR==1) print ">> mlog2db: You did not specify an output file! The default one (out.db) will be used."
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}
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else outfile = substr(optPARtwo,3)
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}
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else if(optPARthree ~ /^-o/){
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if(optPARthree == "-o"){
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if(optPARfour != "noheader" && optPARfour != "nosummary" && optPARfour !~ /^fit/ && optPARfour != "-k"){
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outfile = optPARfour
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}
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else if(NR==1) print ">> mlog2db: You did not specify an output file! The default one (out.db) will be used."
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}
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else outfile = substr(optPARthree,3)
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}
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else if(optPARfour ~ /^-o/){
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if(optPARfour == "-o"){
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if(optPARfive != "noheader" && optPARfive != "nosummary" && optPARfive !~ /^fit/ && optPARfive != "-k"){
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outfile = optPARfive
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}
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else if(NR==1) print ">> mlog2db: You did not specify an output file! The default one (out.db) will be used."
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}
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else outfile = substr(optPARfour,3)
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}
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else if(optPARfive ~ /^-o/){
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if(optPARfive == "-o"){
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if(optPARsix != "noheader" && optPARsix != "nosummary" && optPARsix !~ /^fit/ && optPARsix != "-k"){
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outfile = optPARsix
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}
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else if(NR==1) print ">> mlog2db: You did not specify an output file! The default one (out.db) will be used."
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}
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else outfile = substr(optPARfive,3)
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}
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else if(optPARsix ~ /^-o/){
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if(optPARsix == "-o"){
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if(NR==1) print ">> mlog2db: You did not specify an output file! The default one (out.db) will be used."
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}
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else outfile = substr(optPARsix,3)
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}
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for (( l="$FIRST_OPT_PAR"; l<="$LAST_OPT_PAR"; l++ ))
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do
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CUR_PAR=$( eval echo \$$l )
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NEXT_PAR=$( eval echo \$$((l+1)) )
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if [ "${CUR_PAR:0:2}" == "-o" ]; then
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if [ "$CUR_PAR" == "-o" ]; then
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if [ "$l" -ne "$LAST_OPT_PAR" ] && [ "$NEXT_PAR" != "noheader" ] && [ "$NEXT_PAR" != "nosummary" ] \
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&& [ "${NEXT_PAR:0:3}" != "fit" ] && [ "$NEXT_PAR" != "-k" ]; then
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OUTFILE=$NEXT_PAR
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break
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else
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echo
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echo ">> mlog2db: You did not specify an output file! The default one (out.db) will be used."
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echo
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fi
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else
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OUTFILE=${CUR_PAR:2}
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break
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fi
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fi
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done
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# determine, if the db-header should be written to the output file, default: YES
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NOHEADER=0
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for PAR in "$@"
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do
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if [ "$PAR" == "noheader" ]; then
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NOHEADER=1
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break
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fi
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done
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# put together all data to db-format and write it to the file
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awk -v outfile=$OUTFILE -v noheader=$NOHEADER -v runList=$RUNLIST_USED -v numIndVar=$NUM_OF_IND_VAR '{
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FS = " "
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OFS = " "
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if(NR==1){title=$0; X=0; Y=0; i=1}
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if(NR>4){
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if(NR>1){
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if(X == 0){
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if($0 != ""){
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if($1 == i){
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parArray[i] = $2
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dataArray[i] = $3
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if($4 ~ /^-/)
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@ -419,7 +406,7 @@ else
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posErrArray[i] = $5
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i++
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}
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if($0 == "") X=1
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if($1 ~ /^THEORY/) X=1
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}
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}
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@ -469,7 +456,7 @@ else
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if("'"$TEMPERATURE"'" != "") {
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# Write the db-header
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if("'"$q"'" == 0 && optPARone != "noheader" && optPARtwo != "noheader" && optPARthree != "noheader" && optPARfour != "noheader" && optPARfive != "noheader" && optPARsix != "noheader"){
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if("'"$q"'" == 0 && noheader != 1){
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print "TITLE" >> outfile
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print ">>>Put your title here<<<\n" >> outfile
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@ -540,7 +527,7 @@ else
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# If we do not have the information from the summary file or "nosummary" is set
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else {
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if("'"$q"'" == 0 && optPARone != "noheader" && optPARtwo != "noheader" && optPARthree != "noheader" && optPARfour != "noheader" && optPARfive != "noheader" && optPARsix != "noheader"){
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if("'"$q"'" == 0 && noheader != 1){
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print "TITLE" >> outfile
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print ">>>Put your title here<<<\n" >> outfile
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