add a stretched Kubo-Toyabe function to the PTheory class, including an update of the docu. Motivated by Z. Salman, which also provided a patch, which needed some improvements.
This commit is contained in:
@@ -1,6 +1,6 @@
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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en_US" lang="en_US">
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<!-- Mirrored from intranet.psi.ch/MUSR/MusrFitSetup?cover=print by HTTrack Website Copier/3.x [XR&CO'2010], Tue, 10 Sep 2013 08:47:16 GMT -->
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<!-- Added by HTTrack --><meta http-equiv="content-type" content="text/html;charset=iso-8859-1"><!-- /Added by HTTrack -->
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<head>
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||||
<link rel="stylesheet" href="../pub/System/HeadlinesPlugin/style.css" type="text/css" media="all" />
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@@ -8,11 +8,12 @@
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||||
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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<link rel="icon" href="../pub/Main/WebPreferences/favicon.ico" type="image/x-icon" />
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<link rel="shortcut icon" href="../pub/Main/WebPreferences/favicon.ico" type="image/x-icon" />
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||||
<link rel="alternate" href="https://intranet.psi.ch/wiki/bin/edit/MUSR/MusrFitSetup?t=1358250911" type="application/x-wiki" title="edit MusrFitSetup" />
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||||
<link rel="alternate" href="https://intranet.psi.ch/wiki/bin/edit/MUSR/MusrFitSetup?t=1378802787" type="application/x-wiki" title="edit MusrFitSetup" />
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<meta name="TEXT_NUM_TOPICS" content="Number of topics:" />
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<meta name="TEXT_MODIFY_SEARCH" content="Modify search" />
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<meta name="robots" content="noindex" /><link rel="alternate" type="application/rss+xml" title="RSS Feed" href="WebRsshtml.html" />
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<base /><!--[if IE]></base><![endif]-->
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||||
<link rel='stylesheet' href='../pub/System/ImagePlugin/style.css' media='all' />
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<style type="text/css" media="all">
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||||
@import url('../pub/System/SkinTemplates/base.css');
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</style>
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@@ -228,7 +229,7 @@ Even though there might exist binary packages for the <code>NeXus</code> library
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The <code>ROOT</code> system may or may not be part of the GNU/Linux distribution. If it is, it should be checked that the provided binaries are of a recent version and then these in principle can be installed using a package manager as described above. <br>
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In case the distribution provides no or only outdated binary packages there are the following possibilities: <ul>
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<li> Visit the <code>ROOT</code> <a href="http://root.cern.ch/drupal/content/downloading-root" target="_top">web page</a> and download the packed precompiled binary version matching best the GNU/Linux distribution. Then unpack the bundle to its final destination.
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</li> <li> If there is no precompiled binary version of <code>ROOT</code> available for your system or e.g. <code>ROOT</code> should be compiled with another version of <code>GCC</code> visit the <a href="http://root.cern.ch/drupal/content/downloading-root" target="_top">web page</a> and download the 'complete source tree for all systems'. Then unpack this source tree to its destination (e.g. /opt/root-system)<a name="FootNote1text"></a><span class="FootNoteTextLink" title="In case only a single user is working at the machine it might be considerable to change the ownership of the <code>ROOT</code> folder so that the user has easy write access to this directory: <pre class="bash">chown username:username /opt/root-system/ -R</pre>"><a href="#FootNote1note" class="foswikiCurrentTopicLink">(1)</a></span>, configure<a name="FootNote2text"></a><span class="FootNoteTextLink" title=" When using <code>GCC</code> ≥ 4.2 please make sure that the environment variables <strong>USE_PARALLEL_MINUIT2</strong> and <strong>USE_OPENMP</strong> are <em>not</em> set! Otherwise <code>MINUIT2</code> will be compiled with parallelization support and cannot be used together with <code>musrfit</code> afterwards since the <code>musrfit</code> code is <em>not</em> fully thread-safe! When compiled with <code>GCC</code> ≥ 4.2 <code>musrfit</code> itself will parallelize the χ<sup>2</sup> calculation."><a href="#FootNote2note" class="foswikiCurrentTopicLink">(2)</a></span> it (here using the minimal set of options) and compile it as follows right below: <pre class="bash">
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</li> <li> If there is no precompiled binary version of <code>ROOT</code> available for your system or e.g. <code>ROOT</code> should be compiled with another version of <code>GCC</code> visit the <a href="http://root.cern.ch/drupal/content/downloading-root" target="_top">web page</a> and download the 'complete source tree for all systems'. Then unpack this source tree to its destination (e.g. /opt/root-system)<a name="FootNote1text"></a><span class='FootNoteTextLink' title='In case only a single user is working at the machine it might be considerable to change the ownership of the <code>ROOT</code> folder so that the user has easy write access to this directory: <pre class="bash">chown username:username /opt/root-system/ -R</pre>'><a href="#FootNote1note" class="foswikiCurrentTopicLink">(1)</a></span>, configure<a name="FootNote2text"></a><span class='FootNoteTextLink' title=' When using <code>GCC</code> ≥ 4.2 please make sure that the environment variables <strong>USE_PARALLEL_MINUIT2</strong> and <strong>USE_OPENMP</strong> are <em>not</em> set! Otherwise <code>MINUIT2</code> will be compiled with parallelization support and cannot be used together with <code>musrfit</code> afterwards since the <code>musrfit</code> code is <em>not</em> fully thread-safe! When compiled with <code>GCC</code> ≥ 4.2 <code>musrfit</code> itself will parallelize the χ<sup>2</sup> calculation.'><a href="#FootNote2note" class="foswikiCurrentTopicLink">(2)</a></span> it (here using the minimal set of options) and compile it as follows right below: <pre class="bash">
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cd /opt/root-system
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./configure linux --gminimal --enable-asimage --enable-mathmore --enable-minuit2 --enable-xml
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(or in case of a 64 bit installation: ./configure linuxx8664gcc --gminimal --enable-asimage --enable-mathmore --enable-minuit2 --enable-xml)
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@@ -285,7 +286,7 @@ After the source-code extraction the <strong>autogen.sh</strong> script is calle
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</dd></dl>
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<p></p>
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Normally it should not be necessary to make use of any of the options except for specifying the installation path with <strong>--prefix</strong>. The other paths should be detected automatically. If this does not work for some reason the <strong>configure</strong> script will terminate and ask for the information.
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When the <strong>configure</strong> script has been called successfully everything is ready for building the <code>musrfit</code> libraries and executables. A standard installation sequence (without <code>NeXus</code> support) might then look like<a name="FootNote3text"></a><span class="FootNoteTextLink" title="In case the normal user has no write permissions to the $ROOTSYS and the installation path the "make install" commands have to be executed as superuser."><a href="#FootNote3note" class="foswikiCurrentTopicLink">(3)</a></span>:
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When the <strong>configure</strong> script has been called successfully everything is ready for building the <code>musrfit</code> libraries and executables. A standard installation sequence (without <code>NeXus</code> support) might then look like<a name="FootNote3text"></a><span class='FootNoteTextLink' title='In case the normal user has no write permissions to the $ROOTSYS and the installation path the "make install" commands have to be executed as superuser.'><a href="#FootNote3note" class="foswikiCurrentTopicLink">(3)</a></span>:
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<pre class="bash">
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cd musrfit
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sh autogen.sh
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@@ -403,7 +404,7 @@ In order to install the <code>ROOT</code> system, there are two possibilities: <
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cd /cygdrive/c
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tar xzf root_v5.xx.yy.win32gcc-gcc-4.3.tar.gz
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</pre>
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</li> <li> If due to some reason there was no precompiled <strong>Cygwin GCC 4.3</strong> package available or <code>ROOT</code> should be built from source, one has to visit the <a href="http://root.cern.ch/drupal/content/downloading-root" target="_top">web page</a>, download the 'complete source tree for all systems' and save it for instance in <strong>C:\</strong>.<br>Then go to the Cygwin shell and unpack this source tree, configure<a name="FootNote4text"></a><span class="FootNoteTextLink" title=" When using <code>GCC</code> ≥ 4.2 please make sure that the environment variables <strong>USE_PARALLEL_MINUIT2</strong> and <strong>USE_OPENMP</strong> are <em>not</em> set! Otherwise <code>MINUIT2</code> will be compiled with parallelization support and cannot be used together with <code>musrfit</code> afterwards since the <code>musrfit</code> code is <em>not</em> fully thread-safe! When compiled with <code>GCC</code> ≥ 4.2 <code>musrfit</code> itself will parallelize the χ<sup>2</sup> calculation."><a href="#FootNote4note" class="foswikiCurrentTopicLink">(2)</a></span> it (here using the minimal set of options) and compile it as follows right below:<pre class="bash">
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</li> <li> If due to some reason there was no precompiled <strong>Cygwin GCC 4.3</strong> package available or <code>ROOT</code> should be built from source, one has to visit the <a href="http://root.cern.ch/drupal/content/downloading-root" target="_top">web page</a>, download the 'complete source tree for all systems' and save it for instance in <strong>C:\</strong>.<br>Then go to the Cygwin shell and unpack this source tree, configure<a name="FootNote4text"></a><span class='FootNoteTextLink' title=' When using <code>GCC</code> ≥ 4.2 please make sure that the environment variables <strong>USE_PARALLEL_MINUIT2</strong> and <strong>USE_OPENMP</strong> are <em>not</em> set! Otherwise <code>MINUIT2</code> will be compiled with parallelization support and cannot be used together with <code>musrfit</code> afterwards since the <code>musrfit</code> code is <em>not</em> fully thread-safe! When compiled with <code>GCC</code> ≥ 4.2 <code>musrfit</code> itself will parallelize the χ<sup>2</sup> calculation.'><a href="#FootNote4note" class="foswikiCurrentTopicLink">(2)</a></span> it (here using the minimal set of options) and compile it as follows right below:<pre class="bash">
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cd /cygdrive/c
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tar xzf root_v5.xx.yy.source.tar.gz
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cd root
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@@ -770,7 +771,7 @@ qmake musrgui.pro
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make
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make install
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</pre>
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The last command copies <strong>musrgui.app</strong> to the standard program directory <strong>/Applications</strong> <a name="FootNote5text"></a><span class="FootNoteTextLink" title="In the case <code><b>qt3-mac</b></code> has not been installed, there will be no <strong>musrgui.app</strong> but only the executable <strong>musrgui</strong> which will be placed in the directory <strong>$ROOTSYS/bin</strong> and has to be called from the terminal."><a href="#FootNote5note" class="foswikiCurrentTopicLink">(4)</a></span> and the <strong>musrgui_startup.xml</strong> to <strong>$ROOTSYS/bin/musrgui_startup.xml</strong>. Eventually, in the installed <strong>musrgui_startup.xml</strong> the path-specifications have to be adjusted to match the local <code>musrfit</code> installation. For detailed information on this XML file refer to the <a href="MusrGui.html#MusrguiStartupXml">manual</a>.
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The last command copies <strong>musrgui.app</strong> to the standard program directory <strong>/Applications</strong> <a name="FootNote5text"></a><span class='FootNoteTextLink' title='In the case <code><b>qt3-mac</b></code> has not been installed, there will be no <strong>musrgui.app</strong> but only the executable <strong>musrgui</strong> which will be placed in the directory <strong>$ROOTSYS/bin</strong> and has to be called from the terminal.'><a href="#FootNote5note" class="foswikiCurrentTopicLink">(4)</a></span> and the <strong>musrgui_startup.xml</strong> to <strong>$ROOTSYS/bin/musrgui_startup.xml</strong>. Eventually, in the installed <strong>musrgui_startup.xml</strong> the path-specifications have to be adjusted to match the local <code>musrfit</code> installation. For detailed information on this XML file refer to the <a href="MusrGui.html#MusrguiStartupXml">manual</a>.
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<p></p>
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Under some circumstances it might happen, that if <code>musrgui</code> was called from <code>Finder</code> the necessary libraries for executing <code>musrfit</code> could not be found.
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In that case, the only workaround for the moment is to export the environment variable <strong>DYLD_LIBRARY_PATH</strong> in the shell and call <code>musrgui</code> from a terminal!
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@@ -803,10 +804,9 @@ musrview test-histo-ROOT-NPP.msr
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@@ -821,9 +821,9 @@ musrview test-histo-ROOT-NPP.msr
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</div></div><div class="patternInfo"><span class="patternRevInfo">Topic revision: 15 Jan 2013, <a href="https://intranet.psi.ch/Main/AndreasSuter">AndreasSuter</a></span></div>
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</div></div><div class="patternInfo"><span class="patternRevInfo">Topic revision: r53 - 15 Jan 2013, <a href="https://intranet.psi.ch/Main/AndreasSuter">AndreasSuter</a></span></div>
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@@ -833,7 +833,7 @@ musrview test-histo-ROOT-NPP.msr
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<p></p>
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<p></p>
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<b>PSI Webs</b> <ul>
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<li> <span class="foswikiIcon"><img src="../pub/System/DocumentGraphics/psi.png" width="16" height="16" alt="psi" /></span> <a href="https://intranet.psi.ch/Main/WebHome">WebHome</a>
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<li> <span class="foswikiIcon"><img src="../pub/System/DocumentGraphics/psi.png" width="16" height="16" alt="psi" /></span> <a href="https://intranet.psi.ch/Main/WebHome">Main</a>
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</li> <li> <span class="foswikiIcon"><img src="../pub/System/DocumentGraphics/psi.png" width="16" height="16" alt="psi" /></span> <a href="https://intranet.psi.ch/Main/WebList">weitere Webs</a>
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</li></ul>
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<hr />
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@@ -857,10 +857,13 @@ musrview test-histo-ROOT-NPP.msr
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<div id="patternTopBarContents"><table border="0" cellpadding="0" cellspacing="0" style="width:100%" summary="">
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</li> <li> <form name="changeLanguage" action="https://intranet.psi.ch/wiki/bin/oops/MUSR/MusrFitSetup" method="get"> <input type="hidden" name="redirectto" value="/MUSR/MusrFitSetup?cover=print" /> <select name="language" class="foswikiSelect" onchange="document.changeLanguage.submit()"> <option value="de">Deutsch</option> <option selected="selected" value="en">English</option></select> <input type="hidden" name="template" value="oopslanguagechanged" /> <noscript> <input class="foswikiButton" type="submit" value="Change language" /> </noscript> </form>
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</td></tr></table>
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</div><!--/patternTopBarContents-->
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@@ -869,7 +872,7 @@ musrview test-histo-ROOT-NPP.msr
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</html>
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<p></p>
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Reference in New Issue
Block a user