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improved Fourier transform. For details see the ChangeLog

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suter_a 2012-11-19 13:27:37 +00:00
parent 11d710bce3
commit 17d7ef4b99
22 changed files with 167 additions and 104 deletions
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6
ChangeLog
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@ -6,6 +6,9 @@
changes since 0.11.0
===================================
NEW 2012-11-19 added a flag in the Fourier block (dc-corrected) which can
be used to subtract a potential DC-offset before the Fourier
transform is carried out.
NEW 2012-10-25 (i) add PRINT_LEVEL to the command block (0='nothing' to
3='everything'). This allows to tune the Minuit2 output. (ii) added the
possibilty to give the fit range in bins. For details see the docu.
@ -22,6 +25,7 @@ NEW 2012-05-12 added dump_header. This is a little program which dumps the
NEW 2012-04-24 added a first version for negative muon fitting. At the same
time substaintial bug fixing has been carried out (mainly the
logx/logy handling).
FIXED 2012-11-19 the Fourier transform had 1 Bin too much, this is fixed now
FIXED 2012-11-06 changed to out formating of the fitting parameters such that
enough relevant digits are written, which was not always the
case previously.
@ -30,6 +34,8 @@ FIXED 2012-09-23 fixed wrong chisq output in musrview if expected chisq is
present.
FIXED 2012-05-30 fixed RRF bug in single histo plotting.
FIXED 2012-05-18 fixed wrong forward/backward tag for ROOT-PPC (MUSR-215)
CHANGED 2012-11-19 replaced hard coded gyromagnetic ratio of the muon in the
whole code.
CHANGED 2012-11-09 when converting to WKM, take the beamline tag to decide
which exact WKM flavour should be written.
CHANGED 2012-08-28 prevent LF from allocating too much memory

8
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@ -192,7 +192,7 @@ pre {
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@ -420,7 +420,7 @@ An example XML file looks as follows:
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@ -468,7 +468,7 @@ An example XML file looks as follows:
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@ -225,7 +225,7 @@ The parameters are: <ol>
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@ -273,7 +273,7 @@ The parameters are: <ol>
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@ -1,6 +1,6 @@
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@ -349,7 +349,7 @@ For reporting bugs or requesting new features and improvements please use the <a
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@ -419,7 +419,7 @@ For reporting bugs or requesting new features and improvements please use the <a
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23
doc/html/user/MUSR/MusrFit.html
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@ -1,6 +1,6 @@
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@ -8,7 +8,7 @@
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@ -985,7 +985,8 @@ The last accepted command in the COMMAND block is <strong>SCALE_N0_BKG TRUE | FA
The Fourier transform is done and the results are plotted within <code>musrview</code> &mdash;as input data the actual data shown in <code>musrview</code> is used. In the FOURIER block of the msr file all necessary parameters for calculating and presenting the Fourier transform of the data specified in the <a href="#ThePlotBlock" class="foswikiCurrentTopicLink">PLOT block</a> is given. If the FOURIER block is not present in the msr file, either the parameters set in the <a href="#MusrfitStartupXml" class="foswikiCurrentTopicLink">XML startup file</a> or the system defaults are taken when the Fourier transform is performed. The block starts with the FOURIER keyword and may contain the following entries on the successive lines: <dl>
<dt> units </dt><dd> Here is specified in which domain the Fourier-transformed data is presented. One may choose between the field (<strong>Gauss</strong>), the frequency (<strong>MHz</strong>), and the angular-frequency domain (<strong>Mc/s</strong>).
</dd> <dt> fourier_power </dt><dd> It is possible (but not necessary) to set the number of data points used for the Fourier transform here. As argument the exponent <i>n</i>&lt;21 of a power of 2 is accepted. The number of data points is then 2<sup><i>n</i></sup>. <strong>Attention:</strong> If the number of points given here is bigger than the actual number of available data points, the input data vector is filled with zeros until the number of requested points is reached (zero padding)!
</dd> <dt> apodization </dt><dd> Here is decided if the data should be apodized before the Fourier transform is done and if yes, which apodization should be used<a name="FootNote10text"></a><span class="FootNoteTextLink" title="For further details about apodization of &mu;SR data refer to <a href="https://dspace.library.ubc.ca/bitstream/handle/2429/2004/ubc_1993_spring_phd_riseman_tanya.pdf?sequence=1" target="_top">the PhD thesis of T.M. Riseman</a> &lt;span class="foswikiIcon"><img src="../pub/System/DocumentGraphics/pdf.png" width="16" height="16" alt="pdf" /></span>"&gt;<a href="#FootNote10note" class="foswikiCurrentTopicLink">(10)</a></span>. The argument to be put after the keyword is therefore one of the following: <strong>NONE</strong>, <strong>WEAK</strong>, <strong>MEDIUM</strong> or <strong>STRONG</strong>. If the data should be apodized, they are manipulated as follows: each data value is multiplied by the function <img alt="\sum&#95;{j&#61;0}^4 c&#95;j \left(\frac{i}{n}\right)^{2j}" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_cf09f406a2bf16c5f0c20c11d502f3b6.png" size="footnotesize" />, where <img alt="i" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_c465118a8d86d5f25bba37cc1dcb38a0.png" /> is the data-point index and <img alt="n" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_2be9dcd7bf20bd9b6ae1aae11ded7c43.png" /> is the total number of data points. The coefficients <img alt="c&#95;j" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_efe7e111043faa761548a2e4bfa741ca.png" /> for the different apodizations are given by: <dl>
</dd> <dt> dc-corrected </dt><dd> a flag to remove a potential DC-offset of the signal. Allowed entries are <code>dc-corrected true | 1 | false | 0</code>.
</dd> <dt> apodization </dt><dd> Here is decided if the data should be apodized before the Fourier transform is done and if yes, which apodization should be used (for further details about apodization of &mu;SR data refer to <a href="https://dspace.library.ubc.ca/bitstream/handle/2429/2004/ubc_1993_spring_phd_riseman_tanya.pdf?sequence=1" target="_top">the PhD thesis of T.M. Riseman</a>). The argument to be put after the keyword is therefore one of the following: <strong>NONE</strong>, <strong>WEAK</strong>, <strong>MEDIUM</strong> or <strong>STRONG</strong>. If the data should be apodized, they are manipulated as follows: each data value is multiplied by the function <img alt="\sum&#95;{j&#61;0}^4 c&#95;j \left(\frac{i}{n}\right)^{2j}" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_cf09f406a2bf16c5f0c20c11d502f3b6.png" size="footnotesize" />, where <img alt="i" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_c465118a8d86d5f25bba37cc1dcb38a0.png" /> is the data-point index and <img alt="n" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_2be9dcd7bf20bd9b6ae1aae11ded7c43.png" /> is the total number of data points. The coefficients <img alt="c&#95;j" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_efe7e111043faa761548a2e4bfa741ca.png" /> for the different apodizations are given by: <dl>
<dt> WEAK </dt><dd> <img alt="c&#95;0 &#61; 1,\, c&#95;1 &#61; -1.319391,\, c&#95;2 &#61; 0.703484,\, c&#95;3&#61;c&#95;4&#61;0" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_ab5be67e3c585fe71d839ada9222b051.png" />
</dd> <dt> MEDIUM </dt><dd> <img alt="c&#95;0 &#61; 1,\, c&#95;1 &#61; -1.831292,\, c&#95;2 &#61; 0.983734,\, c&#95;3&#61;c&#95;4&#61;0" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_f2ef2223eea8b06da51ecb20c450fa4a.png" />
</dd> <dt> STRONG </dt><dd> <img alt="c&#95;0 &#61; 1,\, c&#95;1 &#61; -2.708894,\, c&#95;2 &#61; 2.953575,\, c&#95;3&#61;-1.599128,\, c&#95;4&#61;0.399782" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_b8a915ef0eb8aa8e117519d01dfb10c1.png" />
@ -1016,14 +1017,6 @@ Altogether, a possible FOURIER block might look like that:
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Notes
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<a name="FootNote10note"></a><span class="FootNoteLabel"><a href="MusrFit.html#FootNote10text" class="foswikiCurrentWebHomeLink"> <strong>10</strong> </a></span>: <span class="FootNote">For further details about apodization of &mu;SR data refer to <a href="https://dspace.library.ubc.ca/bitstream/handle/2429/2004/ubc_1993_spring_phd_riseman_tanya.pdf?sequence=1" target="_top">the PhD thesis of T.M. Riseman</a> <span class="foswikiIcon"><img src="../pub/System/DocumentGraphics/pdf.png" width="16" height="16" alt="pdf" /></span></span>
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<a name="ThePlotBlock"></a>
<h2><a name="A_4.8_The_PLOT_Block"></a> 4.8 The PLOT Block </h2>
The PLOT block is intended to collect all the information needed for the graphical presentation of the data and fits using <code>musrview</code>. The PLOT keyword at the beginning of the block is followed by a number which indicates the plot type. The plot types match the <a href="#FitTypes" class="foswikiCurrentTopicLink">fit types</a>. Additionally, it is possible to provide information using the following keywords: <dl>
@ -1440,7 +1433,7 @@ For reporting bugs or requesting new features and improvements please use the <a
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@ -1510,7 +1503,7 @@ For reporting bugs or requesting new features and improvements please use the <a
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8
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10
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@ -332,7 +332,7 @@ musrview test-histo-ROOT-NPP.msr
<p></p>
Notes
<p></p>
<a name="FootNote1note"></a><span class="FootNoteLabel"><a href="MusrFitSetup.html#FootNote1text" class="foswikiCurrentWebHomeLink"> <strong>1</strong> </a></span>: <span class="FootNote">In case only a single user is working at the machine it might be considerable to change the ownership of the <code>ROOT</code> folder so that the user has easy write access to this directory: <!-- verbatim2019 --></span>
<a name="FootNote1note"></a><span class="FootNoteLabel"><a href="MusrFitSetup.html#FootNote1text" class="foswikiCurrentWebHomeLink"> <strong>1</strong> </a></span>: <span class="FootNote">In case only a single user is working at the machine it might be considerable to change the ownership of the <code>ROOT</code> folder so that the user has easy write access to this directory: <!-- verbatim2606 --></span>
<p></p>
<a name="FootNote2note"></a><span class="FootNoteLabel"><a href="MusrFitSetup.html#FootNote2text" class="foswikiCurrentWebHomeLink"> <strong>2</strong> </a></span>: <span class="FootNote"> When using <code>GCC</code> &#8805; 4.2 please make sure that the environment variables <strong>USE_PARALLEL_MINUIT2</strong> and <strong>USE_OPENMP</strong> are <em>not</em> set! Otherwise <code>MINUIT2</code> will be compiled with parallelization support and cannot be used together with <code>musrfit</code> afterwards since the <code>musrfit</code> code is <em>not</em> fully thread-safe! When compiled with <code>GCC</code> &#8805; 4.2 <code>musrfit</code> itself will parallelize the &chi;<sup>2</sup> calculation.</span>
<p></p>
@ -821,7 +821,7 @@ musrview test-histo-ROOT-NPP.msr
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@ -869,7 +869,7 @@ musrview test-histo-ROOT-NPP.msr
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10
doc/html/user/MUSR/MusrGui.html
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@ -1,6 +1,6 @@
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@ -8,7 +8,7 @@
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@ -324,7 +324,7 @@ For reporting bugs or requesting new features and improvements please use the <a
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@ -346,7 +346,7 @@ For reporting bugs or requesting new features and improvements please use the <a
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@ -394,7 +394,7 @@ For reporting bugs or requesting new features and improvements please use the <a
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8
doc/html/user/MUSR/QuickStart.html
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@ -1,6 +1,6 @@
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@ -280,7 +280,7 @@ RUN 2008/lem08&#95;his&#95;8472 MUE4 PSI ROOT-NPP (name beamline institute dat
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@ -328,7 +328,7 @@ RUN 2008/lem08&#95;his&#95;8472 MUE4 PSI ROOT-NPP (name beamline institute dat
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10
doc/html/user/MUSR/TutorialSingleHisto.html
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@ -1,6 +1,6 @@
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@ -281,7 +281,7 @@ This page only summarizes the very basic features and options of the programs co
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@ -303,7 +303,7 @@ This page only summarizes the very basic features and options of the programs co
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@ -351,7 +351,7 @@ This page only summarizes the very basic features and options of the programs co
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12
doc/html/user/MUSR/WebHome.html
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@ -1,6 +1,6 @@
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@ -8,7 +8,7 @@
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@ -133,7 +133,7 @@ pre {
</li> <li> <a href="MusrFitAcknowledgements.html">Acknowledgements</a>
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-- <a href="http://lmu.web.psi.ch/lem/group.html" target="_top">AS</a> &amp; <a href="http://www.fsf.org/register_form?referrer=8369" target="_top">BMW</a> - last update Oct 25, 2012 </div>
-- <a href="http://lmu.web.psi.ch/lem/group.html" target="_top">AS</a> &amp; <a href="http://www.fsf.org/register_form?referrer=8369" target="_top">BMW</a> - last update Nov 19, 2012 </div>
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@ -156,9 +156,9 @@ pre {
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@ -204,7 +204,7 @@ pre {
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71
src/classes/PFourier.cpp
View File

@ -32,6 +32,7 @@
#include <cmath>
#include <iostream>
#include <iomanip>
using namespace std;
#include "TH1F.h"
@ -57,11 +58,12 @@ using namespace std;
* FOURIER_UNIT_FIELD, FOURIER_UNIT_FREQ, FOURIER_UNIT_CYCLES
* \param startTime start time of the data time window
* \param endTime end time of the data time window
* \param dcCorrected if true, removed DC offset from signal before Fourier transformation, otherwise not
* \param zeroPaddingPower if set to values > 0, there will be zero padding up to 2^zeroPaddingPower
*/
PFourier::PFourier(TH1F *data, Int_t unitTag, Double_t startTime, Double_t endTime, UInt_t zeroPaddingPower) :
PFourier::PFourier(TH1F *data, Int_t unitTag, Double_t startTime, Double_t endTime, Bool_t dcCorrected, UInt_t zeroPaddingPower) :
fData(data), fUnitTag(unitTag), fStartTime(startTime), fEndTime(endTime),
fZeroPaddingPower(zeroPaddingPower)
fDCCorrected(dcCorrected), fZeroPaddingPower(zeroPaddingPower)
{
// some necessary checks and initialization
if (fData == 0) {
@ -93,9 +95,7 @@ PFourier::PFourier(TH1F *data, Int_t unitTag, Double_t startTime, Double_t endTi
}
// calculate start and end bin
UInt_t start = (UInt_t)(fStartTime/fTimeResolution);
UInt_t end = (UInt_t)(fEndTime/fTimeResolution);
fNoOfData = end-start;
fNoOfData = (UInt_t)((fEndTime-fStartTime)/fTimeResolution);
// check if zero padding is whished
if (fZeroPaddingPower > 0) {
@ -112,7 +112,7 @@ PFourier::PFourier(TH1F *data, Int_t unitTag, Double_t startTime, Double_t endTi
Double_t resolution = 1.0/(fTimeResolution*fNoOfBins); // in MHz
switch (fUnitTag) {
case FOURIER_UNIT_FIELD:
fResolution = resolution/F_GAMMA_BAR_MUON;
fResolution = resolution/GAMMA_BAR_MUON;
break;
case FOURIER_UNIT_FREQ:
fResolution = resolution;
@ -219,7 +219,13 @@ TH1F* PFourier::GetRealFourier(const Double_t scale)
snprintf(name, sizeof(name), "%s_Fourier_Re", fData->GetName());
snprintf(title, sizeof(title), "%s_Fourier_Re", fData->GetTitle());
TH1F *realFourier = new TH1F(name, title, fNoOfBins/2, -fResolution/2.0, (Double_t)fNoOfBins/2.0*fResolution+fResolution/2.0);
UInt_t noOfFourierBins = 0;
if (fNoOfBins % 2 == 0)
noOfFourierBins = fNoOfBins/2;
else
noOfFourierBins = (fNoOfBins+1)/2;
TH1F *realFourier = new TH1F(name, title, noOfFourierBins, -fResolution/2.0, (Double_t)(noOfFourierBins-1)*fResolution+fResolution/2.0);
if (realFourier == 0) {
fValid = false;
cerr << endl << "**SEVERE ERROR** couldn't allocate memory for the real part of the Fourier transform." << endl;
@ -227,7 +233,7 @@ TH1F* PFourier::GetRealFourier(const Double_t scale)
}
// fill realFourier vector
for (UInt_t i=0; i<fNoOfBins/2; i++) {
for (UInt_t i=0; i<noOfFourierBins; i++) {
realFourier->SetBinContent(i+1, scale*fOut[i][0]);
realFourier->SetBinError(i+1, 0.0);
}
@ -254,7 +260,13 @@ TH1F* PFourier::GetImaginaryFourier(const Double_t scale)
snprintf(name, sizeof(name), "%s_Fourier_Im", fData->GetName());
snprintf(title, sizeof(title), "%s_Fourier_Im", fData->GetTitle());
TH1F* imaginaryFourier = new TH1F(name, title, fNoOfBins/2, -fResolution/2.0, (Double_t)fNoOfBins/2.0*fResolution+fResolution/2.0);
UInt_t noOfFourierBins = 0;
if (fNoOfBins % 2 == 0)
noOfFourierBins = fNoOfBins/2;
else
noOfFourierBins = (fNoOfBins+1)/2;
TH1F* imaginaryFourier = new TH1F(name, title, noOfFourierBins, -fResolution/2.0, (Double_t)(noOfFourierBins-1)*fResolution+fResolution/2.0);
if (imaginaryFourier == 0) {
fValid = false;
cerr << endl << "**SEVERE ERROR** couldn't allocate memory for the imaginary part of the Fourier transform." << endl;
@ -262,7 +274,7 @@ TH1F* PFourier::GetImaginaryFourier(const Double_t scale)
}
// fill imaginaryFourier vector
for (UInt_t i=0; i<fNoOfBins/2; i++) {
for (UInt_t i=0; i<noOfFourierBins; i++) {
imaginaryFourier->SetBinContent(i+1, scale*fOut[i][1]);
imaginaryFourier->SetBinError(i+1, 0.0);
}
@ -290,7 +302,13 @@ TH1F* PFourier::GetPowerFourier(const Double_t scale)
snprintf(name, sizeof(name), "%s_Fourier_Pwr", fData->GetName());
snprintf(title, sizeof(title), "%s_Fourier_Pwr", fData->GetTitle());
TH1F* pwrFourier = new TH1F(name, title, fNoOfBins/2, -fResolution/2.0, (Double_t)fNoOfBins/2.0*fResolution+fResolution/2.0);
UInt_t noOfFourierBins = 0;
if (fNoOfBins % 2 == 0)
noOfFourierBins = fNoOfBins/2;
else
noOfFourierBins = (fNoOfBins+1)/2;
TH1F* pwrFourier = new TH1F(name, title, noOfFourierBins, -fResolution/2.0, (Double_t)(noOfFourierBins-1)*fResolution+fResolution/2.0);
if (pwrFourier == 0) {
fValid = false;
cerr << endl << "**SEVERE ERROR** couldn't allocate memory for the power part of the Fourier transform." << endl;
@ -298,7 +316,7 @@ TH1F* PFourier::GetPowerFourier(const Double_t scale)
}
// fill powerFourier vector
for (UInt_t i=0; i<fNoOfBins/2; i++) {
for (UInt_t i=0; i<noOfFourierBins; i++) {
pwrFourier->SetBinContent(i+1, scale*sqrt(fOut[i][0]*fOut[i][0]+fOut[i][1]*fOut[i][1]));
pwrFourier->SetBinError(i+1, 0.0);
}
@ -326,7 +344,13 @@ TH1F* PFourier::GetPhaseFourier(const Double_t scale)
snprintf(name, sizeof(name), "%s_Fourier_Phase", fData->GetName());
snprintf(title, sizeof(title), "%s_Fourier_Phase", fData->GetTitle());
TH1F* phaseFourier = new TH1F(name, title, fNoOfBins/2, -fResolution/2.0, (Double_t)fNoOfBins/2.0*fResolution+fResolution/2.0);
UInt_t noOfFourierBins = 0;
if (fNoOfBins % 2 == 0)
noOfFourierBins = fNoOfBins/2;
else
noOfFourierBins = (fNoOfBins+1)/2;
TH1F* phaseFourier = new TH1F(name, title, noOfFourierBins, -fResolution/2.0, (Double_t)(noOfFourierBins-1)*fResolution+fResolution/2.0);
if (phaseFourier == 0) {
fValid = false;
cerr << endl << "**SEVERE ERROR** couldn't allocate memory for the phase part of the Fourier transform." << endl;
@ -335,7 +359,7 @@ TH1F* PFourier::GetPhaseFourier(const Double_t scale)
// fill phaseFourier vector
Double_t value = 0.0;
for (UInt_t i=0; i<fNoOfBins/2; i++) {
for (UInt_t i=0; i<noOfFourierBins; i++) {
// calculate the phase
if (fOut[i][0] == 0) {
if (fOut[i][1] >= 0.0)
@ -380,14 +404,23 @@ void PFourier::PrepareFFTwInputData(UInt_t apodizationTag)
}
}
// 2nd fill fIn
Int_t val = static_cast<Int_t>(fStartTime/fTimeResolution) + t0bin;
Int_t ival = static_cast<Int_t>(fStartTime/fTimeResolution) + t0bin;
UInt_t start = 0;
if (val >= 0) {
start = static_cast<UInt_t>(static_cast<Int_t>(fStartTime/fTimeResolution) + t0bin);
if (ival >= 0) {
start = static_cast<UInt_t>(ival);
}
Double_t mean = 0.0;
if (fDCCorrected) {
for (UInt_t i=0; i<fNoOfData; i++) {
mean += fData->GetBinContent(i+start);
}
mean /= (Double_t)fNoOfData;
}
// 2nd fill fIn
for (UInt_t i=0; i<fNoOfData; i++) {
fIn[i][0] = fData->GetBinContent(i+start);
fIn[i][0] = fData->GetBinContent(i+start) - mean;
fIn[i][1] = 0.0;
}
for (UInt_t i=fNoOfData; i<fNoOfBins; i++) {

3
src/classes/PFunction.cpp
View File

@ -36,6 +36,7 @@ using namespace std;
#include <boost/algorithm/string/trim.hpp> // for stripping leading whitespace in std::string
#include "PMusr.h"
#include "PFunction.h"
//--------------------------------------------------------------------------
@ -188,7 +189,7 @@ void PFunction::FillFuncEvalTree(iter_t const& i, PFuncTreeNode &node)
node.fDvalue = 3.14159265358979323846; // keep the value
} else if (i->value.id() == PFunctionGrammar::constGammaMuID) { // handle constant gamma_mu
node.fID = PFunctionGrammar::constGammaMuID; // keep the ID
node.fDvalue = 0.0135538817; // keep the value
node.fDvalue = GAMMA_BAR_MUON; // keep the value
} else if (i->value.id() == PFunctionGrammar::parameterID) { // handle parameter number
str = string(i->value.begin(), i->value.end()); // get string
boost::algorithm::trim(str);

26
src/classes/PMsrHandler.cpp
View File

@ -935,6 +935,12 @@ Int_t PMsrHandler::WriteMsrLogFile(const Bool_t messages)
fout << endl;
} else if (sstr.BeginsWith("fourier_power")) {
fout << "fourier_power " << fFourier.fFourierPower << endl;
} else if (sstr.BeginsWith("dc-corrected")) {
fout << "dc-corrected ";
if (fFourier.fDCCorrected == true)
fout << "true" << endl;
else
fout << "false" << endl;
} else if (sstr.BeginsWith("apodization")) {
fout << "apodization ";
if (fFourier.fApodization == FOURIER_APOD_NONE) {
@ -3156,6 +3162,7 @@ void PMsrHandler::InitFourierParameterStructure(PMsrFourierStructure &fourier)
fourier.fFourierBlockPresent = false; // fourier block present
fourier.fUnits = FOURIER_UNIT_NOT_GIVEN; // fourier untis, default: NOT GIVEN
fourier.fFourierPower = -1; // zero padding, default: -1 = NOT GIVEN
fourier.fDCCorrected = false; // dc-corrected FFT, default: false
fourier.fApodization = FOURIER_APOD_NOT_GIVEN; // apodization, default: NOT GIVEN
fourier.fPlotTag = FOURIER_PLOT_NOT_GIVEN; // initial plot tag, default: NOT GIVEN
fourier.fPhaseParamNo = 0; // initial parameter no = 0 means not a parameter
@ -3187,8 +3194,6 @@ Bool_t PMsrHandler::HandleFourierEntry(PMsrLines &lines)
if (lines.empty()) // no fourier block present
return true;
//cout << endl << ">> in PMsrHandler::HandleFourierEntry, Fourier block present ...";
PMsrFourierStructure fourier;
InitFourierParameterStructure(fourier);
@ -3251,6 +3256,22 @@ Bool_t PMsrHandler::HandleFourierEntry(PMsrLines &lines)
continue;
}
}
} else if (iter->fLine.BeginsWith("dc-corrected", TString::kIgnoreCase)) { // dc-corrected
if (tokens->GetEntries() < 2) { // dc-corrected tag is missing
error = true;
continue;
} else {
ostr = dynamic_cast<TObjString*>(tokens->At(1));
str = ostr->GetString();
if (!str.CompareTo("true", TString::kIgnoreCase) || !str.CompareTo("1")) {
fourier.fDCCorrected = true;
} else if (!str.CompareTo("false", TString::kIgnoreCase) || !str.CompareTo("0")) {
fourier.fDCCorrected = false;
} else { // unrecognized dc-corrected tag
error = true;
continue;
}
}
} else if (iter->fLine.BeginsWith("apodization", TString::kIgnoreCase)) { // apodization
if (tokens->GetEntries() < 2) { // apodization tag is missing
error = true;
@ -3388,6 +3409,7 @@ Bool_t PMsrHandler::HandleFourierEntry(PMsrLines &lines)
cerr << endl << "[fourier_power n # n is a number such that zero padding up to 2^n will be used]";
cerr << endl << " n=0 means no zero padding";
cerr << endl << " 0 <= n <= 20 are allowed values";
cerr << endl << "[dc-corrected true | false]";
cerr << endl << "[apodization none | weak | medium | strong]";
cerr << endl << "[plot real | imag | real_and_imag | power | phase]";
cerr << endl << "[phase value]";

7
src/classes/PMusrCanvas.cpp
View File

@ -369,6 +369,7 @@ void PMusrCanvas::SetMsrHandler(PMsrHandler *msrHandler)
if (fMsrHandler->GetMsrFourierList()->fFourierPower != -1) {
fFourier.fFourierPower = fMsrHandler->GetMsrFourierList()->fFourierPower;
}
fFourier.fDCCorrected = fMsrHandler->GetMsrFourierList()->fDCCorrected;
if (fMsrHandler->GetMsrFourierList()->fApodization != FOURIER_APOD_NOT_GIVEN) {
fFourier.fApodization = fMsrHandler->GetMsrFourierList()->fApodization;
}
@ -2326,7 +2327,7 @@ void PMusrCanvas::HandleFourier()
double endTime = fHistoFrame->GetBinCenter(bin);
for (UInt_t i=0; i<fData.size(); i++) {
// calculate fourier transform of the data
PFourier fourierData(fData[i].data, fFourier.fUnits, startTime, endTime, fFourier.fFourierPower);
PFourier fourierData(fData[i].data, fFourier.fUnits, startTime, endTime, fFourier.fDCCorrected, fFourier.fFourierPower);
if (!fourierData.IsValid()) {
cerr << endl << "**SEVERE ERROR** PMusrCanvas::HandleFourier: couldn't invoke PFourier to calculate the Fourier data ..." << endl;
return;
@ -2366,7 +2367,7 @@ void PMusrCanvas::HandleFourier()
// calculate fourier transform of the theory
Int_t powerPad = (Int_t)round(log((endTime-startTime)/fData[i].theory->GetBinWidth(1))/log(2))+3;
PFourier fourierTheory(fData[i].theory, fFourier.fUnits, startTime, endTime, powerPad);
PFourier fourierTheory(fData[i].theory, fFourier.fUnits, startTime, endTime, fFourier.fDCCorrected, powerPad);
if (!fourierTheory.IsValid()) {
cerr << endl << "**SEVERE ERROR** PMusrCanvas::HandleFourier: couldn't invoke PFourier to calculate the Fourier theory ..." << endl;
return;
@ -2486,7 +2487,7 @@ void PMusrCanvas::HandleDifferenceFourier()
for (UInt_t i=0; i<fData.size(); i++) {
// calculate fourier transform of the data
PFourier fourierData(fData[i].diff, fFourier.fUnits, startTime, endTime, fFourier.fFourierPower);
PFourier fourierData(fData[i].diff, fFourier.fUnits, startTime, endTime, fFourier.fDCCorrected, fFourier.fFourierPower);
if (!fourierData.IsValid()) {
cerr << endl << "**SEVERE ERROR** PMusrCanvas::HandleFourier: couldn't invoke PFourier to calculate the Fourier diff ..." << endl;
return;

4
src/classes/PRunAsymmetry.cpp
View File

@ -1604,10 +1604,10 @@ Bool_t PRunAsymmetry::PrepareRRFViewData(PRawRunData* runData, UInt_t histoNo[2]
gammaRRF = 1.0;
break;
case RRF_UNIT_G:
gammaRRF = 0.0135538817*TMath::TwoPi();
gammaRRF = GAMMA_BAR_MUON*TMath::TwoPi();
break;
case RRF_UNIT_T:
gammaRRF = 0.0135538817*TMath::TwoPi()*1.0e4;
gammaRRF = GAMMA_BAR_MUON*TMath::TwoPi()*1.0e4;
break;
default:
gammaRRF = TMath::TwoPi();

5
src/classes/PRunSingleHisto.cpp
View File

@ -866,7 +866,6 @@ Bool_t PRunSingleHisto::PrepareFitData(PRawRunData* runData, const UInt_t histoN
// write these times back into the data structure. This way it is available when writting the log-file
fRunInfo->SetFitRange(fFitStartTime, 0);
fRunInfo->SetFitRange(fFitEndTime, 1);
cout << "debug> fit: " << fRunInfo->GetFitRange(0) << ", " << fRunInfo->GetFitRange(1) << end;
}
// check how the background shall be handled
@ -1302,10 +1301,10 @@ Bool_t PRunSingleHisto::PrepareViewData(PRawRunData* runData, const UInt_t histo
gammaRRF = 1.0;
break;
case RRF_UNIT_G:
gammaRRF = 0.0135538817*TMath::TwoPi();
gammaRRF = GAMMA_BAR_MUON*TMath::TwoPi();
break;
case RRF_UNIT_T:
gammaRRF = 0.0135538817*TMath::TwoPi()*1.0e4;
gammaRRF = GAMMA_BAR_MUON*TMath::TwoPi()*1.0e4;
break;
default:
gammaRRF = TMath::TwoPi();

8
src/include/PFourier.h
View File

@ -34,14 +34,13 @@
#include "fftw3.h"
#include "PMusr.h"
#define F_APODIZATION_NONE 1
#define F_APODIZATION_WEAK 2
#define F_APODIZATION_MEDIUM 3
#define F_APODIZATION_STRONG 4
// gamma_muon / (2 pi) = 1.355342e-2 (MHz/G)
#define F_GAMMA_BAR_MUON 1.355342e-2
/**
* muSR Fourier class.
*/
@ -50,7 +49,7 @@ class PFourier
public:
PFourier(TH1F *data, Int_t unitTag,
Double_t startTime = 0.0, Double_t endTime = 0.0,
UInt_t zeroPaddingPower = 0);
Bool_t dcCorrected = false, UInt_t zeroPaddingPower = 0);
virtual ~PFourier();
virtual void Transform(UInt_t apodizationTag = 0);
@ -74,6 +73,7 @@ class PFourier
Double_t fTimeResolution; ///< time resolution of the data histogram
Double_t fStartTime; ///< start time of the data histogram
Double_t fEndTime; ///< end time of the data histogram
Bool_t fDCCorrected; ///< if true, removed DC offset from signal before Fourier transformation, otherwise not
UInt_t fZeroPaddingPower; ///< power for zero padding, if set < 0 no zero padding will be done
Double_t fResolution; ///< Fourier resolution (field, frequency, or angular frequency)

7
src/include/PMusr.h
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@ -55,6 +55,12 @@ using namespace std;
// muon life time in (us), see PRL99, 032001 (2007)
#define PMUON_LIFETIME 2.197019
// muon gyromagnetic ratio, see gamma_mu = 2.0 mu_mu / hbar
// mu_mu = -4.49044807(15) 1e-26 J/T (see http://physics.nist.gov/cgi-bin/cuu/Results?search_for=muon)
// hbar = 1.054571726(47) 1e-34 Js (see http://physics.nist.gov/cgi-bin/cuu/Value?hbar|search_for=universal_in!)
// gamma_muon / (2 pi) = 1.355342e-2 (MHz/G)
#define GAMMA_BAR_MUON 1.35538817e-2
// accelerator cycles in (us), needed to determine proper background
#define ACCEL_PERIOD_PSI 0.01975
#define ACCEL_PERIOD_TRIUMF 0.04337
@ -654,6 +660,7 @@ typedef vector<PMsrRunBlock> PMsrRunList;
typedef struct {
Bool_t fFourierBlockPresent; ///< flag indicating if a Fourier block is present in the msr-file
Int_t fUnits; ///< flag used to indicate the units. 0=field units (G); 1=frequency units (MHz); 2=Mc/s
Bool_t fDCCorrected; ///< if set true, the dc offset of the signal/theory will be removed before the FFT is made.
Int_t fFourierPower; ///< i.e. zero padding up to 2^fFourierPower, default = 0 which means NO zero padding
Int_t fApodization; ///< tag indicating the kind of apodization wished, 0=no appodization (default), 1=weak, 2=medium, 3=strong (for details see the docu)
Int_t fPlotTag; ///< tag used for initial plot. 0=real, 1=imaginary, 2=real & imaginary (default), 3=power, 4=phase

2
src/musredit/forms/PMsr2DataDialog.ui
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@ -319,7 +319,7 @@
</rect>
</property>
<property name="title">
<string>Data Ouput File Name</string>
<string>Data Output File Name</string>
</property>
<widget class="QWidget" name="layoutWidget">
<property name="geometry">

17
src/tests/analyticFakeData/analyticFakeData.C
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@ -47,7 +47,7 @@ void analyticFakeData(const TString type)
gROOT->GetListOfBrowsables()->Add(histosFolder, "histos");
decayAnaModule = histosFolder->AddFolder("DecayAnaModule", "muSR decay histograms");
UInt_t runNo = 2001;
UInt_t runNo = 7001;
TString fileName, tstr, label, tstr1;
fileName.Form("0%d.root", (Int_t)runNo);
@ -160,7 +160,7 @@ void analyticFakeData(const TString type)
header->Set("MagneticFieldEnvironmentInfo/Magnet Name", "virtual");
// 5th write required BeamlineInfo entries
header->Set("BeamlineInfo/Name", "virtual");
header->Set("BeamlineInfo/Name", "muE4");
}
// create histos
@ -170,15 +170,15 @@ void analyticFakeData(const TString type)
// asymmetry related stuff
const Double_t timeResolution = 0.1953125; // ns
// Double_t a0[8] = {0.12, 0.12, 0.12, 0.12, 0.12, 0.12, 0.12, 0.12};
Double_t a0[8] = {0.22, 0.22, 0.22, 0.22, 0.22, 0.22, 0.22, 0.22};
Double_t a0[8] = {0.2201, 0.22, 0.2202, 0.2198, 0.22, 0.2199, 0.22, 0.2203};
// Double_t a1[8] = {0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05};
Double_t a1[8] = {0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0};
Double_t phase[8] = {5.0*TMath::Pi()/180.0, 50.0*TMath::Pi()/180.0, 95.0*TMath::Pi()/180.0, 140.0*TMath::Pi()/180.0,
185.0*TMath::Pi()/180.0, 230.0*TMath::Pi()/180.0, 275.0*TMath::Pi()/180.0, 320.0*TMath::Pi()/180.0,};
const Double_t gamma = 0.00001355; // gamma/(2pi)
Double_t bb0 = 150.0; // field in Gauss
const Double_t gamma = 0.0000135538817; // gamma/(2pi)
Double_t bb0 = 1000.0; // field in Gauss
Double_t bb1 = 400.0; // field in Gauss
Double_t sigma0 = 0.35/1000.0; // Gaussian sigma in 1/ns
Double_t sigma0 = 0.05/1000.0; // Gaussian sigma in 1/ns
Double_t sigma1 = 0.15/1000.0; // Gaussian sigma in 1/ns
TH1F *histo[16];
@ -203,8 +203,9 @@ void analyticFakeData(const TString type)
histo[i]->SetBinContent(j+1, bkg[i]);
} else {
time = (Double_t)(j-t0[i])*timeResolution;
dval = (Double_t)n0[i]*TMath::Exp(-time/tau)*(1.0+a0[i]*TMath::Exp(-0.5*TMath::Power(time*sigma0,2.0))*TMath::Cos(TMath::TwoPi()*gamma*bb0*time+phase[i])
+a1[i]*TMath::Exp(-0.5*TMath::Power(time*sigma1,2.0))*TMath::Cos(TMath::TwoPi()*gamma*bb1*time+phase[i]))+(Double_t)bkg[i];
// dval = (Double_t)n0[i]*TMath::Exp(-time/tau)*(1.0+a0[i]*TMath::Exp(-0.5*TMath::Power(time*sigma0,2.0))*TMath::Cos(TMath::TwoPi()*gamma*bb0*time+phase[i])
// +a1[i]*TMath::Exp(-0.5*TMath::Power(time*sigma1,2.0))*TMath::Cos(TMath::TwoPi()*gamma*bb1*time+phase[i]))+(Double_t)bkg[i];
dval = (Double_t)n0[i]*TMath::Exp(-time/tau)*(1.0+a0[i]*TMath::BesselJ0(TMath::TwoPi()*gamma*bb0*time+phase[i])*TMath::Exp(-time*sigma0))+(Double_t)bkg[i];
histo[i]->SetBinContent(j+1, (UInt_t)dval);
}
}