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first implementation of MusrRoot. Cleaner handling of Red/Green mode data. General cleanup

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suter_a
2012-03-22 07:00:34 +00:00
parent 59df2224ba
commit 138e7ba369
85 changed files with 5899 additions and 2541 deletions
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275
src/classes/PRunAsymmetry.cpp
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@@ -10,7 +10,7 @@
***************************************************************************/
/***************************************************************************
* Copyright (C) 2007 by Andreas Suter *
* Copyright (C) 2007-2012 by Andreas Suter *
* andreas.suter@psi.ch *
* *
* This program is free software; you can redistribute it and/or modify *
@@ -385,11 +385,11 @@ Bool_t PRunAsymmetry::PrepareData()
PUIntVector forwardHistoNo;
PUIntVector backwardHistoNo;
for (UInt_t i=0; i<fRunInfo->GetForwardHistoNoSize(); i++) {
forwardHistoNo.push_back(fRunInfo->GetForwardHistoNo(i)-1);
forwardHistoNo.push_back(fRunInfo->GetForwardHistoNo(i));
if (runData->GetNoOfHistos() <= forwardHistoNo[i]) {
if (!runData->IsPresent(forwardHistoNo[i])) {
cerr << endl << ">> PRunAsymmetry::PrepareData(): **PANIC ERROR**:";
cerr << endl << ">> forwardHistoNo found = " << forwardHistoNo[i]+1 << ", but there are only " << runData->GetNoOfHistos() << " runs!?!?";
cerr << endl << ">> forwardHistoNo found = " << forwardHistoNo[i] << ", which is NOT present in the data file!?!?";
cerr << endl << ">> Will quit :-(";
cerr << endl;
// clean up
@@ -399,11 +399,11 @@ Bool_t PRunAsymmetry::PrepareData()
}
}
for (UInt_t i=0; i<fRunInfo->GetBackwardHistoNoSize(); i++) {
backwardHistoNo.push_back(fRunInfo->GetBackwardHistoNo(i)-1);
backwardHistoNo.push_back(fRunInfo->GetBackwardHistoNo(i));
if (runData->GetNoOfHistos() <= backwardHistoNo[i]) {
if (!runData->IsPresent(backwardHistoNo[i])) {
cerr << endl << ">> PRunAsymmetry::PrepareData(): **PANIC ERROR**:";
cerr << endl << ">> backwardHistoNo found = " << backwardHistoNo[i]+1 << ", but there are only " << runData->GetNoOfHistos() << " runs!?!?";
cerr << endl << ">> backwardHistoNo found = " << backwardHistoNo[i] << ", which is NOT present in the data file!?!?";
cerr << endl << ">> Will quit :-(";
cerr << endl;
// clean up
@@ -423,75 +423,74 @@ Bool_t PRunAsymmetry::PrepareData()
return false;
}
// check if the t0's are given in the msr-file
if (fRunInfo->GetT0Size() == 0) { // t0's are NOT in the msr-file
// check if the t0's are in the data file
if (runData->GetT0Size() != 0) { // t0's in the run data
// keep the proper t0's. For asymmetry runs, forward/backward are holding the histo no
// fForwardHistoNo starts with 1 not with 0 etc. ;-)
for (UInt_t i=0; i<forwardHistoNo.size(); i++) {
fT0s.push_back(runData->GetT0(fRunInfo->GetForwardHistoNo(i)-1)); // forward t0
fT0s.push_back(runData->GetT0(fRunInfo->GetBackwardHistoNo(i)-1)); // backward t0
}
} else { // t0's are neither in the run data nor in the msr-file -> will try estimated ones!
for (UInt_t i=0; i<forwardHistoNo.size(); i++) {
fT0s.push_back(runData->GetT0Estimated(fRunInfo->GetForwardHistoNo(i)-1));
fT0s.push_back(runData->GetT0Estimated(fRunInfo->GetBackwardHistoNo(i)-1));
cerr << endl << ">> PRunAsymmetry::PrepareData(): **WARRNING** NO t0's found, neither in the run data nor in the msr-file!";
cerr << endl << ">> run: " << fRunInfo->GetRunName()->Data();
cerr << endl << ">> will try the estimated one: forward t0 = " << runData->GetT0Estimated(fRunInfo->GetForwardHistoNo(i)-1);
cerr << endl << ">> will try the estimated one: backward t0 = " << runData->GetT0Estimated(fRunInfo->GetBackwardHistoNo(i)-1);
cerr << endl << ">> NO WARRANTY THAT THIS OK!! For instance for LEM this is almost for sure rubbish!";
cerr << endl;
}
}
} else { // t0's in the msr-file
for (UInt_t i=0; i<forwardHistoNo.size(); i++) {
// check if enough t0's are given in the msr-file, if not try to get the rest from the data file
if ((fRunInfo->GetT0Size() <= 2*i) || (fRunInfo->GetT0Size() <= 2*i+1)) { // t0 for i not present in the msr-file, i.e. #t0's != #forward histos
if (static_cast<Int_t>(runData->GetT0Size()) > fRunInfo->GetForwardHistoNo(i)-1) { // t0 for i present in the data file
fT0s.push_back(runData->GetT0(fRunInfo->GetForwardHistoNo(i)-1));
} else { // t0 is neither in the run data nor in the msr-file -> will try estimated ones!
fT0s.push_back(runData->GetT0Estimated(fRunInfo->GetForwardHistoNo(i)-1));
cerr << endl << ">> PRunSingleHisto::PrepareData(): **WARNING** NO t0's found, neither in the run data nor in the msr-file!";
cerr << endl << ">> run: " << fRunInfo->GetRunName()->Data();
cerr << endl << ">> will try the estimated one: t0 = " << runData->GetT0Estimated(fRunInfo->GetForwardHistoNo(i)-1);
cerr << endl << ">> NO WARRANTY THAT THIS OK!! For instance for LEM this is almost for sure rubbish!";
cerr << endl;
}
if (static_cast<Int_t>(runData->GetT0Size()) > fRunInfo->GetBackwardHistoNo(i)-1) { // t0 for i present in the data file
fT0s.push_back(runData->GetT0(fRunInfo->GetBackwardHistoNo(i)-1));
} else { // t0 is neither in the run data nor in the msr-file -> will try estimated ones!
fT0s.push_back(runData->GetT0Estimated(fRunInfo->GetBackwardHistoNo(i)-1));
cerr << endl << ">> PRunSingleHisto::PrepareData(): **WARNING** NO t0's found, neither in the run data nor in the msr-file!";
cerr << endl << ">> run: " << fRunInfo->GetRunName()->Data();
cerr << endl << ">> will try the estimated one: t0 = " << runData->GetT0Estimated(fRunInfo->GetBackwardHistoNo(i)-1);
cerr << endl << ">> NO WARRANTY THAT THIS OK!! For instance for LEM this is almost for sure rubbish!";
cerr << endl;
}
} else { // # of t0's in the msr-file == # of histos in forward
fT0s.push_back(fRunInfo->GetT0(2*i)); // forward t0
fT0s.push_back(fRunInfo->GetT0(2*i+1)); // backward t0
// feed all T0's
// first init T0's, T0's are stored as (forward T0, backward T0, etc.)
fT0s.clear();
fT0s.resize(2*forwardHistoNo.size());
for (UInt_t i=0; i<fT0s.size(); i++) {
fT0s[i] = -1.0;
}
// check if t0's are given in the data file
if (runData->GetT0Size() != 0) {
// compare t0's of the msr-file with the one in the data file
if (fabs(fRunInfo->GetT0(2*i)-runData->GetT0(fRunInfo->GetForwardHistoNo(i)-1))>5.0) {
cerr << endl << ">> PRunAsymmetry::PrepareData(): **WARNING**: forward histo #" << i+1;
cerr << endl << ">> t0 from the msr-file is " << fRunInfo->GetT0(2*i)+1;
cerr << endl << ">> t0 from the data file is " << runData->GetT0(fRunInfo->GetForwardHistoNo(i)-1);
cerr << endl << ">> This is quite a deviation! Is this done intentionally??";
cerr << endl;
}
if (fabs(fRunInfo->GetT0(2*i+1)-runData->GetT0(fRunInfo->GetBackwardHistoNo(i)-1))>5.0) { // given in bins!!
cerr << endl << ">> PRunAsymmetry::PrepareData(): **WARNING**: backward histo #" << i+1;
cerr << endl << ">> t0 from the msr-file is " << fRunInfo->GetT0(2*i+1)+1;
cerr << endl << ">> t0 from the data file is " << runData->GetT0(fRunInfo->GetBackwardHistoNo(i)-1);
cerr << endl << ">> This is quite a deviation! Is this done intentionally??";
cerr << endl;
}
}
// fill in the T0's from the msr-file (if present)
for (UInt_t i=0; i<fRunInfo->GetT0BinSize(); i++) {
fT0s[i] = fRunInfo->GetT0Bin(i);
}
// fill in the T0's from the data file, if not already present in the msr-file
for (UInt_t i=0; i<forwardHistoNo.size(); i++) {
if (fT0s[2*i] == -1.0) // i.e. not present in the msr-file, try the data file
if (runData->GetT0Bin(forwardHistoNo[i]) > 0.0) {
fT0s[2*i] = runData->GetT0Bin(forwardHistoNo[i]);
fRunInfo->SetT0Bin(fT0s[2*i], 2*i);
}
}
for (UInt_t i=0; i<backwardHistoNo.size(); i++) {
if (fT0s[2*i+1] == -1.0) // i.e. not present in the msr-file, try the data file
if (runData->GetT0Bin(backwardHistoNo[i]) > 0.0) {
fT0s[2*i+1] = runData->GetT0Bin(backwardHistoNo[i]);
fRunInfo->SetT0Bin(fT0s[2*i+1], 2*i+1);
}
}
// fill in the T0's gaps, i.e. in case the T0's are NOT in the msr-file and NOT in the data file
for (UInt_t i=0; i<forwardHistoNo.size(); i++) {
if (fT0s[2*i] == -1.0) { // i.e. not present in the msr-file and data file, use the estimated T0
fT0s[2*i] = runData->GetT0BinEstimated(forwardHistoNo[i]);
fRunInfo->SetT0Bin(fT0s[2*i], 2*i);
cerr << endl << ">> PRunAsymmetry::PrepareData(): **WARRNING** NO t0's found, neither in the run data nor in the msr-file!";
cerr << endl << ">> run: " << fRunInfo->GetRunName();
cerr << endl << ">> will try the estimated one: forward t0 = " << runData->GetT0BinEstimated(forwardHistoNo[i]);
cerr << endl << ">> NO WARRANTY THAT THIS OK!! For instance for LEM this is almost for sure rubbish!";
cerr << endl;
}
}
for (UInt_t i=0; i<backwardHistoNo.size(); i++) {
if (fT0s[2*i+1] == -1.0) { // i.e. not present in the msr-file and data file, use the estimated T0
fT0s[2*i+1] = runData->GetT0BinEstimated(backwardHistoNo[i]);
fRunInfo->SetT0Bin(fT0s[2*i+1], 2*i+1);
cerr << endl << ">> PRunAsymmetry::PrepareData(): **WARRNING** NO t0's found, neither in the run data nor in the msr-file!";
cerr << endl << ">> run: " << fRunInfo->GetRunName();
cerr << endl << ">> will try the estimated one: backward t0 = " << runData->GetT0BinEstimated(backwardHistoNo[i]);
cerr << endl << ">> NO WARRANTY THAT THIS OK!! For instance for LEM this is almost for sure rubbish!";
cerr << endl;
}
}
// check if t0 is within proper bounds
for (UInt_t i=0; i<forwardHistoNo.size(); i++) {
if ((fT0s[2*i] < 0) || (fT0s[2*i] > (Int_t)runData->GetDataBin(forwardHistoNo[i])->size())) {
cerr << endl << ">> PRunAsymmetry::PrepareData(): **ERROR** t0 data bin (" << fT0s[2*i] << ") doesn't make any sense!";
cerr << endl << ">> forwardHistoNo " << forwardHistoNo[i];
cerr << endl;
return false;
}
if ((fT0s[2*i+1] < 0) || (fT0s[2*i+1] > (Int_t)runData->GetDataBin(backwardHistoNo[i])->size())) {
cerr << endl << ">> PRunAsymmetry::PrepareData(): **ERROR** t0 data bin (" << fT0s[2*i+1] << ") doesn't make any sense!";
cerr << endl << ">> backwardHistoNo " << backwardHistoNo[i];
cerr << endl;
return false;
}
}
@@ -520,66 +519,60 @@ Bool_t PRunAsymmetry::PrepareData()
}
// get T0's of the to be added run
PUIntVector t0Add;
// check if the t0's are given in the msr-file
if (i > fRunInfo->GetAddT0Entries()) { // t0's are NOT in the msr-file
// check if the t0's are in the data file
if (addRunData->GetT0Size() != 0) { // t0's in the run data
// keep the proper t0's. For asymmetry runs, forward/backward are holding the histo no
// fForwardHistoNo starts with 1 not with 0 etc. ;-)
for (UInt_t j=0; j<fRunInfo->GetForwardHistoNoSize(); j++) {
t0Add.push_back(addRunData->GetT0(fRunInfo->GetForwardHistoNo(j)-1)); // forward t0
t0Add.push_back(addRunData->GetT0(fRunInfo->GetBackwardHistoNo(j)-1)); // backward t0
PDoubleVector t0Add;
// feed all T0's
// first init T0's, T0's are stored as (forward T0, backward T0, etc.)
t0Add.clear();
t0Add.resize(2*forwardHistoNo.size());
for (UInt_t j=0; j<t0Add.size(); j++) {
t0Add[j] = -1.0;
}
// fill in the T0's from the msr-file (if present)
for (Int_t j=0; j<fRunInfo->GetAddT0BinSize(i); j++) {
t0Add[j] = fRunInfo->GetAddT0Bin(i, j);
}
// fill in the T0's from the data file, if not already present in the msr-file
for (UInt_t j=0; j<forwardHistoNo.size(); j++) {
if (t0Add[2*j] == -1.0) // i.e. not present in the msr-file, try the data file
if (addRunData->GetT0Bin(forwardHistoNo[j]) > 0.0) {
t0Add[2*j] = addRunData->GetT0Bin(forwardHistoNo[j]);
fRunInfo->SetAddT0Bin(t0Add[2*j], i-1, 2*j);
}
} else { // t0's are neither in the run data nor in the msr-file -> will try estimated ones!
for (UInt_t j=0; j<fRunInfo->GetForwardHistoNoSize(); j++) {
t0Add.push_back(addRunData->GetT0Estimated(fRunInfo->GetForwardHistoNo(j)-1));
t0Add.push_back(addRunData->GetT0Estimated(fRunInfo->GetBackwardHistoNo(j)-1));
cerr << endl << ">> PRunAsymmetry::PrepareData(): **WARRNING** NO t0's found, neither in the run data nor in the msr-file!";
cerr << endl << ">> addRun: " << fRunInfo->GetRunName(i)->Data();
cerr << endl << ">> will try the estimated one: forward t0 = " << addRunData->GetT0Estimated(fRunInfo->GetForwardHistoNo(j)-1);
cerr << endl << ">> will try the estimated one: backward t0 = " << addRunData->GetT0Estimated(fRunInfo->GetBackwardHistoNo(j)-1);
cerr << endl << ">> NO WARRANTY THAT THIS OK!! For instance for LEM this is almost for sure rubbish!";
cerr << endl;
}
for (UInt_t j=0; j<backwardHistoNo.size(); j++) {
if (t0Add[2*j+1] == -1.0) // i.e. not present in the msr-file, try the data file
if (addRunData->GetT0Bin(backwardHistoNo[j]) > 0.0) {
t0Add[2*j+1] = addRunData->GetT0Bin(backwardHistoNo[j]);
fRunInfo->SetAddT0Bin(t0Add[2*j+1], i-1, 2*j+1);
}
}
// fill in the T0's gaps, i.e. in case the T0's are NOT in the msr-file and NOT in the data file
for (UInt_t j=0; j<forwardHistoNo.size(); j++) {
if (t0Add[2*j] == -1.0) { // i.e. not present in the msr-file and data file, use the estimated T0
t0Add[2*j] = addRunData->GetT0BinEstimated(forwardHistoNo[j]);
fRunInfo->SetAddT0Bin(t0Add[2*j], i-1, 2*j);
cerr << endl << ">> PRunAsymmetry::PrepareData(): **WARRNING** NO t0's found, neither in the run data nor in the msr-file!";
cerr << endl << ">> run: " << fRunInfo->GetRunName(i);
cerr << endl << ">> will try the estimated one: forward t0 = " << addRunData->GetT0BinEstimated(forwardHistoNo[j]);
cerr << endl << ">> NO WARRANTY THAT THIS OK!! For instance for LEM this is almost for sure rubbish!";
cerr << endl;
}
} else { // t0's in the msr-file
for (UInt_t j=0; j<fRunInfo->GetForwardHistoNoSize(); j++) {
// check if t0's are given in the data file
if (addRunData->GetT0Size() != 0) {
// compare t0's of the msr-file with the one in the data file
if (fabs(fRunInfo->GetAddT0(i-1,2*j)-addRunData->GetT0(fRunInfo->GetForwardHistoNo(j)-1))>5.0) { // given in bins!!
cerr << endl << ">> PRunAsymmetry::PrepareData(): **WARNING**:";
cerr << endl << ">> t0 from the msr-file is " << fRunInfo->GetAddT0(i-1,2*j)+1; // +1 since vector starts at 0
cerr << endl << ">> t0 from the data file is " << addRunData->GetT0(fRunInfo->GetForwardHistoNo(j)-1);
cerr << endl << ">> This is quite a deviation! Is this done intentionally??";
cerr << endl << ">> addrun: " << fRunInfo->GetRunName(i)->Data();
cerr << endl;
}
if (fabs(fRunInfo->GetAddT0(i-1,2*j+1)-addRunData->GetT0(fRunInfo->GetBackwardHistoNo(j)-1))>5.0) { // given in bins!!
cerr << endl << ">> PRunAsymmetry::PrepareData(): **WARNING**:";
cerr << endl << ">> t0 from the msr-file is " << fRunInfo->GetAddT0(i-1,2*j+1)+1; // +1 since vector starts at 0
cerr << endl << ">> t0 from the data file is " << addRunData->GetT0(fRunInfo->GetBackwardHistoNo(j)-1);
cerr << endl << ">> This is quite a deviation! Is this done intentionally??";
cerr << endl << ">> addrun: " << fRunInfo->GetRunName(i)->Data();
cerr << endl;
}
}
if (i <= fRunInfo->GetAddT0Entries()) {
if (2*j+1 < static_cast<UInt_t>(fRunInfo->GetAddT0Size(i-1))) {
t0Add.push_back(fRunInfo->GetAddT0(i-1,2*j));
t0Add.push_back(fRunInfo->GetAddT0(i-1,2*j+1));
} else {
cerr << endl << ">> PRunSingleHisto::PrepareData(): **WARNING** NO t0's found, neither in the addrun data (";
cerr << fRunInfo->GetRunName(i)->Data();
cerr << "), nor in the msr-file! Will try to use the T0 of the run data (";
cerr << fRunInfo->GetRunName(i)->Data();
cerr << ") without any warranty!";
cerr << endl;
t0Add.push_back(fRunInfo->GetT0(2*j));
t0Add.push_back(fRunInfo->GetT0(2*j+1));
}
}
}
for (UInt_t j=0; j<backwardHistoNo.size(); j++) {
if (t0Add[2*j+1] == -1.0) { // i.e. not present in the msr-file and data file, use the estimated T0
t0Add[2*j+1] = addRunData->GetT0BinEstimated(backwardHistoNo[j]);
fRunInfo->SetAddT0Bin(t0Add[2*j+1], i-1, 2*j+1);
cerr << endl << ">> PRunAsymmetry::PrepareData(): **WARRNING** NO t0's found, neither in the run data nor in the msr-file!";
cerr << endl << ">> run: " << fRunInfo->GetRunName(i);
cerr << endl << ">> will try the estimated one: backward t0 = " << runData->GetT0BinEstimated(backwardHistoNo[j]);
cerr << endl << ">> NO WARRANTY THAT THIS OK!! For instance for LEM this is almost for sure rubbish!";
cerr << endl;
}
}
@@ -589,8 +582,8 @@ Bool_t PRunAsymmetry::PrepareData()
addRunSize = addRunData->GetDataBin(forwardHistoNo[k])->size();
for (UInt_t j=0; j<addRunData->GetDataBin(forwardHistoNo[k])->size(); j++) { // loop over the bin indices
// make sure that the index stays in the proper range
if ((j+t0Add[2*k]-fT0s[2*k] >= 0) && (j+t0Add[2*k]-fT0s[2*k] < addRunSize)) {
forward[k][j] += addRunData->GetDataBin(forwardHistoNo[k])->at(j+t0Add[2*k]-fT0s[2*k]);
if ((j+(Int_t)t0Add[2*k]-(Int_t)fT0s[2*k] >= 0) && (j+(Int_t)t0Add[2*k]-(Int_t)fT0s[2*k] < addRunSize)) {
forward[k][j] += addRunData->GetDataBin(forwardHistoNo[k])->at(j+(Int_t)t0Add[2*k]-(Int_t)fT0s[2*k]);
}
}
}
@@ -600,8 +593,8 @@ Bool_t PRunAsymmetry::PrepareData()
addRunSize = addRunData->GetDataBin(backwardHistoNo[k])->size();
for (UInt_t j=0; j<addRunData->GetDataBin(backwardHistoNo[k])->size(); j++) { // loop over the bin indices
// make sure that the index stays in the proper range
if ((j+t0Add[2*k+1]-fT0s[2*k+1] >= 0) && (j+t0Add[2*k+1]-fT0s[2*k+1] < addRunSize)) {
backward[k][j] += addRunData->GetDataBin(backwardHistoNo[k])->at(j+t0Add[2*k+1]-fT0s[2*k+1]);
if ((j+(Int_t)t0Add[2*k+1]-(Int_t)fT0s[2*k+1] >= 0) && (j+(Int_t)t0Add[2*k+1]-(Int_t)fT0s[2*k+1] < addRunSize)) {
backward[k][j] += addRunData->GetDataBin(backwardHistoNo[k])->at(j+(Int_t)t0Add[2*k+1]-(Int_t)fT0s[2*k+1]);
}
}
}
@@ -871,24 +864,28 @@ Bool_t PRunAsymmetry::PrepareFitData(PRawRunData* runData, UInt_t histoNo[2])
// check if data range has been provided, and if not try to estimate them
if (start[0] < 0) {
start[0] = (Int_t)t0[0]+offset;
fRunInfo->SetDataRange(start[0], 0);
cerr << endl << ">> PRunAsymmetry::PrepareData(): **WARNING** data range (forward) was not provided, will try data range start = t0+" << offset << "(=10ns) = " << start[0] << ".";
cerr << endl << ">> NO WARRANTY THAT THIS DOES MAKE ANY SENSE.";
cerr << endl;
}
if (start[1] < 0) {
start[1] = (Int_t)t0[1]+offset;
fRunInfo->SetDataRange(start[1], 2);
cerr << endl << ">> PRunAsymmetry::PrepareData(): **WARNING** data range (backward) was not provided, will try data range start = t0+" << offset << "(=10ns) = " << start[1] << ".";
cerr << endl << ">> NO WARRANTY THAT THIS DOES MAKE ANY SENSE.";
cerr << endl;
}
if (end[0] < 0) {
end[0] = runData->GetDataBin(histoNo[0])->size();
fRunInfo->SetDataRange(end[0], 1);
cerr << endl << ">> PRunAsymmetry::PrepareData(): **WARNING** data range (forward) was not provided, will try data range end = " << end[0] << ".";
cerr << endl << ">> NO WARRANTY THAT THIS DOES MAKE ANY SENSE.";
cerr << endl;
}
if (end[1] < 0) {
end[1] = runData->GetDataBin(histoNo[1])->size();
fRunInfo->SetDataRange(end[1], 3);
cerr << endl << ">> PRunAsymmetry::PrepareData(): **WARNING** data range (backward) was not provided, will try data range end = " << end[1] << ".";
cerr << endl << ">> NO WARRANTY THAT THIS DOES MAKE ANY SENSE.";
cerr << endl;
@@ -1023,14 +1020,6 @@ Bool_t PRunAsymmetry::PrepareFitData(PRawRunData* runData, UInt_t histoNo[2])
fData.AppendErrorValue(error);
}
// // count the number of bins to be fitted
// Double_t time;
// fNoOfFitBins=0;
// for (UInt_t i=0; i<fData.GetValue()->size(); i++) {
// time = fData.GetDataTimeStart() + (Double_t)i * fData.GetDataTimeStep();
// if ((time >= fFitStartTime) && (time <= fFitEndTime))
// fNoOfFitBins++;
// }
CalcNoOfFitBins();
// clean up