From aa82948bbd8a7fd27934e486adb1d6e0e1751277 Mon Sep 17 00:00:00 2001
From: salman <zaher.salman@psi.ch>
Date: Thu, 27 Aug 2026 15:09:24 +0200
Subject: [PATCH] Updated software links and version.

---
 .gitignore             | 15 +++++++++++++++
 Readme.md => README.md |  7 ++++---
 TrimSP.html            |  6 +++---
 main.js                | 13 +++++++------
 package-lock.json      |  2 +-
 package.json           | 15 ++++++++++++---
 6 files changed, 42 insertions(+), 16 deletions(-)
 rename Readme.md => README.md (97%)

diff --git a/.gitignore b/.gitignore
index 9961b7d..498b1a1 100644
--- a/.gitignore
+++ b/.gitignore
@@ -123,3 +123,18 @@ trimspNL
 resources/bin/trimspNL
 fortran/trimspNL
 fortran/trimspNL-static
+
+# Local development metadata and backup files
+.codex
+*.cbk
+
+# Fortran compiler/profiling products
+*.o
+*.mod
+gmon.out
+fortran/trimspNL-debug
+fortran/trimspNL-profile
+
+# Generated alternative-RNG validation output trees
+/tests-pcg32/
+/tests-xoshiro/
diff --git a/Readme.md b/README.md
similarity index 97%
rename from Readme.md
rename to README.md
index 863f615..527aa44 100644
--- a/Readme.md
+++ b/README.md
@@ -8,7 +8,7 @@ workbench combines a [Fortran] transport engine with a graphical user
 interface ([GUI]) for preparing input decks, running scans, and plotting the
 results.
 
-In the terminology used by Salman and Prokscha:
+In the terminology used in the accompanying publication:
 
 * **TRIM.SP-NL** is the generalized multilayer Fortran transport engine.
 * **TRIMSP-NL Workbench** is the complete engine, GUI, and scan-management
@@ -22,7 +22,7 @@ In the terminology used by Salman and Prokscha:
 
 Further information can be found in the following publications:
 
-- Z. Salman and T. Prokscha,
+- Z. Salman, R. M. L. McFadden, and T. Prokscha,
   <i>Modernization and Statistical Validation of a Multilayer TRIM.SP Code for
   Low-Energy Muon and Ion Implantation</i> (2026).
 - J. P. Biersack and W. Eckstein,
@@ -53,7 +53,8 @@ Repository metadata is also provided in [CITATION.cff](CITATION.cff).
 ### Supported platforms ###
 
 * [Linux]
-* Online at: http://musruser.psi.ch/TrimSP/
+* Online at: http://musruser.psi.ch/TrimSP-NL/
+* Source repository: https://gitea.psi.ch/LMU/TRIMSP
 
 ### Installation ###
 
diff --git a/TrimSP.html b/TrimSP.html
index 829be4c..0eb3823 100644
--- a/TrimSP.html
+++ b/TrimSP.html
@@ -387,9 +387,9 @@
 	    TRIM.SP references and the TRIMSP-NL Workbench paper.
 	  </p>
 	  <p>
-	    Repository metadata:
-	    <a href="https://bitbucket.org/zaher-salman/trimsp">
-	      bitbucket.org/zaher-salman/trimsp
+	    Source repository:
+	    <a href="https://gitea.psi.ch/LMU/TRIMSP">
+	      gitea.psi.ch/LMU/TRIMSP
 	    </a>
 	  </p>
 	</div>
diff --git a/main.js b/main.js
index 90b0cf5..9176b8f 100644
--- a/main.js
+++ b/main.js
@@ -97,7 +97,7 @@ function showAboutDialog(parentWindow) {
     const detail = [
 	'Graphical workbench for low-energy muon and ion implantation simulations.',
 	`Version: ${app.getVersion()}`,
-	'License: GNU General Public License v2 (GPL-2.0).',
+	'License: GNU General Public License v3 or later (GPL-3.0-or-later).',
 	'Maintained by the Low Energy Muons group at the Paul Scherrer Institute.',
 	'Main contributor: Zaher Salman.',
 	'',
@@ -108,15 +108,16 @@ function showAboutDialog(parentWindow) {
 	'TRIM.SP references and the TRIMSP-NL Workbench paper.',
 	'',
 	'Key references:',
-	'Z. Salman and T. Prokscha, Modernization and Statistical Validation',
-	'of a Multilayer TRIM.SP Code for Low-Energy Muon and Ion Implantation.',
+	'Z. Salman, R. M. L. McFadden, and T. Prokscha, Modernization and',
+	'Statistical Validation of a Multilayer TRIM.SP Code for Low-Energy Muon',
+	'and Ion Implantation.',
 	'J. P. Biersack and W. Eckstein, Appl. Phys. A 34, 73-94 (1984).',
 	'W. Eckstein, Computer Simulation of Ion-Solid Interactions (1991).',
 	'E. Morenzoni et al., NIM B 192, 245-266 (2002).',
 	'',
-	'Project repositories:',
-	'Bitbucket: bitbucket.org/zaher-salman/trimsp',
-	'Gitea: gitea.psi.ch/LMU/TRIMSP'
+	'Project repository:',
+	'Gitea: gitea.psi.ch/LMU/TRIMSP',
+	'Web application: musruser.psi.ch/TrimSP-NL/'
     ].join('\n');
 
     dialog.showMessageBox(parentWindow, {
diff --git a/package-lock.json b/package-lock.json
index 29e3a0b..02d562d 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -7,7 +7,7 @@
     "": {
       "name": "TrimSP",
       "version": "1.4.0",
-      "license": "GPL2",
+      "license": "GPL-3.0-or-later",
       "dependencies": {
         "plotly.js-dist": "^1.58.4"
       },
diff --git a/package.json b/package.json
index 0c0a9f7..de8df8b 100644
--- a/package.json
+++ b/package.json
@@ -20,10 +20,14 @@
   },
   "keywords": [
     "TRIM",
-    "SRIM"
+    "TRIM.SP",
+    "Monte Carlo",
+    "muon",
+    "ion implantation",
+    "multilayer"
   ],
   "author": "Zaher Salman",
-  "license": "GPL2",
+  "license": "GPL-3.0-or-later",
   "devDependencies": {
     "@electron-forge/cli": "^6.0.0-beta.57",
     "@electron-forge/maker-deb": "^6.0.0-beta.57",
@@ -36,5 +40,10 @@
   "dependencies": {
     "plotly.js-dist": "^1.58.4"
   },
-  "config": {}
+  "config": {},
+  "homepage": "http://musruser.psi.ch/TrimSP-NL/",
+  "repository": {
+    "type": "git",
+    "url": "https://gitea.psi.ch/LMU/TRIMSP.git"
+  }
 }