commit 7735c3d78df3d75a67ba3b8074ff167cef999455 Author: Zaher Salman Date: Sun Jun 6 18:34:29 2021 +0200 First upload diff --git a/TrimSP.cfg b/TrimSP.cfg new file mode 100644 index 0000000..a754517 --- /dev/null +++ b/TrimSP.cfg @@ -0,0 +1,32 @@ +[Files] +fileNamePrefix=SrTiO3 +workPath=/tmp/test +[Layers] +numLayer=2 +L1Comp=SrTiO3 +L1rho=5.12 +L1d=300 +L2Comp=SrTiO3 +L2rho=5.12 +L2d=10000 +[ProjectileParameters] +workPath=/tmp/test +fileNamePrefix=SrTiO3 +ProjType=Muon +numberProj=1000 +z0=0 +dz=20 +valEnergy=2000 +sigEnergy=450 +valAngle=0 +sigAngle=15 +ranSeed=78741 +[ScanSequence] +scanSeq=1 +comboScan=EScan +scanType=scanLoop +scanFrom=1000 +scanStep=2000 +scanTo=14000 +scanList=1000 +scanListdz= diff --git a/TrimSP.html b/TrimSP.html new file mode 100644 index 0000000..60c94ec --- /dev/null +++ b/TrimSP.html @@ -0,0 +1,253 @@ + + + + + + + + + + + + Trim.SP + + + + + + + + + +
+
+
+ + + + +
+
+ + + + + +
+ + + + + + +
+ +
+ Layers +
+ +
+ + +
Layer #CompositionDensity [g/cm3]Thickness [A]
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+ 		+ + + + + + + + + + + + + + + + +
Projectile parameters
Projectile +
Number of projectiles
Starting depth [A]
Depth increment [A]
Energy [eV]
Energy sigma [eV]
Angel [deg]
Angle sigma [deg]
Random seed
+
+
+
+ Enable scan on + + + + + + + + + + + + +
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+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
EF + + KK0 + +
ESB + + KK0R + +
SHEATH + + KDEE1 + +
ERC + + KDEE2 + +
RD + + IPOT + +
CA + + IPOTR + +
IRL + +
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+
+
+ + + diff --git a/TrimSPelec.js b/TrimSPelec.js new file mode 100644 index 0000000..3aef0be --- /dev/null +++ b/TrimSPelec.js @@ -0,0 +1,56 @@ +// This file contains function that are Electron/Node specific +function getFiles(dir, filelist){ + fileList = []; + var files = fs.readdirSync(dir); + for(var i of files){ + if (!files.hasOwnProperty(i)) continue; + var name = dir+'/'+files[i]; + if (!fs.statSync(name).isDirectory()){ + fileList.push(name); + } + } + return fileList; +} + +function execute(command) { + exec(command, {stdio: 'inherit'}); +} + +function checkDir(directory) { + // Check whether director exists, if not create it + if (!fs.existsSync(directory)) { + // Folder does not exist try to create it + fs.mkdir(directory,{recursive: true}, (err) => { + if (err) { + alert('Cannot create data folder '+directory); + return(0); + } + }); + } + return(1); +} + +function writeAsciiFile(filename,content) { + // Write string content into ascii file filename + try { fs.writeFileSync(filename, content, 'utf-8'); } + catch(e) { + alert('Failed to save '+filename); + return(0); + } + return(1); +} + +function readAsciiFile(filename) { + // Read ascii file filename and return content in a string + var content; + // If an array of filenames was sent take the first one only + if (Array.isArray(filename)) {filename=filename[0];} + try { + content = fs.readFileSync(filename, 'utf8'); + } catch(e) { + alert('Failed to read '+filename); + return(0); + } + return(content); +} + diff --git a/TrimSPlib.js b/TrimSPlib.js new file mode 100644 index 0000000..57258f4 --- /dev/null +++ b/TrimSPlib.js @@ -0,0 +1,1251 @@ +// This file contains function that are Javascript generic + +function parse_formula (mf) { + // This function takes a chemical formula and returns + // an object that contains the atoms and their number + var mf = mf.replace(/\[/g,"(").replace(/\]/g,")").replace(/\{/g,"(").replace(/\}/g,")").replace(/\s+/g,""); + if(/^\d+/.test(mf)) throw new SyntaxError("Molecular formula should not start with a number!"); + var mol = {}; + while(mf.includes("(")){ + var x = mf.lastIndexOf("("); + var y = mf.indexOf(")", mf.lastIndexOf("(")); + + var z = mf.substr(x+1, y-x-1); + var c = mf.substr(y+1); + c = /^\d+/.exec(c); + c=(c!= null)?Number(c[0]):1; + + var a = this.parse_formula(z); + var b = ""; + for(var k in a){ + b+=k+""+a[k]*c; + } + mf = mf.substr(0, x)+ b + mf.substr(y+1+((c>1)?(c+'').length:0)); + } + + var m = ""; + while(m = /([A-Z]{1}[a-z]{0,}[0-9]{0,})/.exec(mf)){ + var m1 = /([A-Z]{1,}[a-z]{0,})/.exec(m[0]); + var m2 = /\d+/.exec(m[0]); + if(typeof mol[m1[0]] == 'undefined') mol[m1[0]]=(m2!=null)?Number(m2[0]):1; + else mol[m1[0]] += (m2!=null)?Number(m2[0]):1; + mf = mf.replace(m[0], ""); + } + return mol; +} + + +function Zof(Element) +{ + var ElementsZ = { + "Muon":1, + "Li8":3, + "B12":5, + "H":1, + "He":2, + "Li":3, + "Be":4, + "B":5, + "C":6, + "N":7, + "O":8, + "F":9, + "Ne":10, + "Na":11, + "Mg":12, + "Al":13, + "Si":14, + "P":15, + "S":16, + "Cl":17, + "Ar":18, + "K":19, + "Ca":20, + "Sc":21, + "Ti":22, + "V":23, + "Cr":24, + "Mn":25, + "Fe":26, + "Co":27, + "Ni":28, + "Cu":29, + "Zn":30, + "Ga":31, + "Ge":32, + "As":33, + "Se":34, + "Br":35, + "Kr":36, + "Rb":37, + "Sr":38, + "Y":39, + "Zr":40, + "Nb":41, + "Mo":42, + "Tc":43, + "Ru":44, + "Rh":45, + "Pd":46, + "Ag":47, + "Cd":48, + "In":49, + "Sn":50, + "Sb":51, + "Te":52, + "I":53, + "Xe":54, + "Cs":55, + "Ba":56, + "La":57, + "Ce":58, + "Pr":59, + "Nd":60, + "Pm":61, + "Sm":62, + "Eu":63, + "Gd":64, + "Tb":65, + "Dy":66, + "Ho":67, + "Er":68, + "Tm":69, + "Yb":70, + "Lu":71, + "Hf":72, + "Ta":73, + "W":74, + "Re":75, + "Os":76, + "Ir":77, + "Pt":78, + "Au":79, + "Hg":80, + "Tl":81, + "Pb":82, + "Bi":83, + "Po":84, + "At":85, + "Rn":86, + "Fr":87, + "Ra":88, + "Ac":89, + "Th":90, + "Pa":91, + "U":92, + "":0.0000 + } + return ElementsZ[Element]; +} + +function Massof(Element) +{ + var ElementsA = { + "Muon":0.113, + "Li8":8.0, + "B12":12.0, + "H":1.00800, + "He":4.00300, + "Li":6.93900, + "Be":9.01200, + "B":10.81100, + "C":12.01100, + "N":14.00700, + "O":15.99900, + "F":18.99800, + "Ne":20.18300, + "Na":22.99000, + "Mg":24.31200, + "Al":26.98200, + "Si":28.08600, + "P":30.97400, + "S":32.06400, + "Cl":35.45300, + "Ar":39.94800, + "K":39.10200, + "Ca":40.08000, + "Sc":44.95600, + "Ti":47.90000, + "V":50.94200, + "Cr":51.99600, + "Mn":54.93800, + "Fe":55.84700, + "Co":58.93300, + "Ni":58.71000, + "Cu":63.54000, + "Zn":65.37000, + "Ga":69.72000, + "Ge":72.59000, + "As":74.92200, + "Se":78.96000, + "Br":79.90900, + "Kr":83.80000, + "Rb":85.47000, + "Sr":87.62000, + "Y":88.90500, + "Zr":91.22000, + "Nb":92.90600, + "Mo":95.94000, + "Tc":98.00000, + "Ru":101.07000, + "Rh":102.90500, + "Pd":106.40000, + "Ag":107.87000, + "Cd":112.40000, + "In":114.82000, + "Sn":118.69000, + "Sb":121.75000, + "Te":127.60000, + "I":126.90400, + "Xe":131.30000, + "Cs":132.90500, + "Ba":137.34000, + "La":138.91000, + "Ce":140.12000, + "Pr":140.90700, + "Nd":144.24001, + "Pm":147.00000, + "Sm":150.35001, + "Eu":151.96001, + "Gd":157.25000, + "Tb":158.92400, + "Dy":162.50000, + "Ho":164.92999, + "Er":167.25999, + "Tm":168.93401, + "Yb":173.03999, + "Lu":174.97000, + "Hf":178.49001, + "Ta":180.94800, + "W":183.85001, + "Re":186.20000, + "Os":190.20000, + "Ir":192.20000, + "Pt":195.09000, + "Au":196.96700, + "Hg":200.59000, + "Tl":204.37000, + "Pb":207.19000, + "Bi":208.98000, + "Po":210.00000, + "At":210.00000, + "Rn":222.00000, + "Fr":223.00000, + "Ra":226.00000, + "Ac":227.00000, + "Th":232.03799, + "Pa":231.00000, + "U":238.03000, + "":0.0000 + } + return ElementsA[Element]; +} + +function Elastof(Element) { + var Elast ={ + "H":0.10000, + "He":0.10000, + "Li":1.63000, + "Be":3.32000, + "B":5.77000, + "C":7.37000, + "N":4.92000, + "O":2.60000, + "F":0.84000, + "Ne":0.02000, + "Na":1.11000, + "Mg":1.51000, + "Al":3.39000, + "Si":4.63000, + "P":3.43000, + "S":2.85000, + "Cl":1.40000, + "Ar":0.08000, + "K":0.93000, + "Ca":1.84000, + "Sc":3.90000, + "Ti":4.85000, + "V":5.31000, + "Cr":4.10000, + "Mn":2.92000, + "Fe":4.28000, + "Co":4.39000, + "Ni":4.44000, + "Cu":3.49000, + "Zn":1.35000, + "Ga":2.81000, + "Ge":3.85000, + "As":2.96000, + "Se":2.25000, + "Br":1.22000, + "Kr":0.12000, + "Rb":0.85000, + "Sr":1.72000, + "Y":4.37000, + "Zr":6.25000, + "Nb":7.57000, + "Mo":6.82000, + "Tc":6.85000, + "Ru":6.74000, + "Rh":5.75000, + "Pd":3.89000, + "Ag":2.95000, + "Cd":1.16000, + "In":2.52000, + "Sn":3.14000, + "Sb":2.75000, + "Te":2.23000, + "I":1.11000, + "Xe":0.16000, + "Cs":0.80000, + "Ba":1.90000, + "La":4.47000, + "Ce":4.32000, + "Pr":3.70000, + "Nd":3.40000, + "Pm":0.10000, + "Sm":2.14000, + "Eu":1.86000, + "Gd":4.14000, + "Tb":4.05000, + "Dy":3.04000, + "Ho":3.14000, + "Er":3.29000, + "Tm":2.42000, + "Yb":1.60000, + "Lu":4.43000, + "Hf":6.44000, + "Ta":8.10000, + "W":8.90000, + "Re":8.03000, + "Os":8.17000, + "Ir":6.94000, + "Pt":5.84000, + "Au":3.81000, + "Hg":0.67000, + "Tl":1.88000, + "Pb":2.03000, + "Bi":2.18000, + "Po":1.50000, + "At":0.10000, + "Rn":0.20000, + "Fr":0.10000, + "Ra":1.66000, + "Ac":4.25000, + "Th":6.20000, + "Pa":0.10000, + "U":5.55000, + "":0.00000 + }; + return Elast[Element]; +} + +function Stopicru(Element) +{ + var Stopicru = { + "H":"1.25400,1.44000,242.60001,12000.00000,0.11590", + "He":"1.22900,1.39700,484.50000,5873.00000,0.05225", + "Li":"1.41100,1.60000,725.59998,3013.00000,0.04578", + "Be":"2.24800,2.59000,966.00000,153.80000,0.03475", + "B":"2.47400,2.81500,1206.00000,1060.00000,0.02855", + "C":"2.60100,2.60100,1701.00000,1279.00000,0.01638", + "N":"2.95400,3.35000,1683.00000,1900.00000,0.02513", + "O":"2.65200,3.00000,1920.00000,2000.00000,0.02230", + "F":"2.08500,2.35200,2157.00000,2634.00000,0.01816", + "Ne":"1.95100,2.19900,2393.00000,2699.00000,0.01568", + "Na":"2.54200,2.86900,2628.00000,1854.00000,0.01472", + "Mg":"3.79100,4.29300,2862.00000,1009.00000,0.01397", + "Al":"4.15400,4.73900,2766.00000,164.50000,0.02023", + "Si":"4.91400,5.59800,3193.00000,232.70000,0.01419", + "P":"3.23200,3.64700,3561.00000,1560.00000,0.01267", + "S":"3.44700,3.89100,3792.00000,1219.00000,0.01211", + "Cl":"5.30100,6.00800,3969.00000,645.09998,0.01183", + "Ar":"5.73100,6.50000,4253.00000,530.00000,0.01123", + "K":"5.15200,5.83300,4482.00000,545.70001,0.01129", + "Ca":"5.52100,6.25200,4710.00000,553.29999,0.01120", + "Sc":"5.20100,5.88400,4938.00000,560.90002,0.01000", + "Ti":"4.85800,5.48900,5260.00000,651.09998,0.00893", + "V":"4.47900,5.05500,5391.00000,952.29999,0.00912", + "Cr":"3.98300,4.48900,5616.00000,1336.00000,0.00841", + "Mn":"3.46900,3.90700,5725.00000,1461.00000,0.00883", + "Fe":"3.51900,3.96300,6065.00000,1243.00000,0.00778", + "Co":"3.14000,3.53500,6288.00000,1372.00000,0.00736", + "Ni":"3.55300,4.00400,6205.00000,555.09998,0.00876", + "Cu":"3.69600,4.19400,4649.00000,81.13000,0.02242", + "Zn":"4.21000,4.75000,6953.00000,295.20001,0.00681", + "Ga":"5.04100,5.69700,7137.00000,202.60001,0.00673", + "Ge":"5.55400,6.30000,6496.00000,110.00000,0.00969", + "As":"5.32300,6.01200,7611.00000,292.50000,0.00645", + "Se":"5.87400,6.65600,7395.00000,117.50000,0.00768", + "Br":"6.65800,7.53600,7694.00000,222.30000,0.00651", + "Kr":"6.41300,7.24000,11850.00000,153.70000,0.00288", + "Rb":"5.69400,6.42900,8478.00000,292.89999,0.00609", + "Sr":"6.33900,7.15900,8693.00000,330.29999,0.00600", + "Y":"6.40700,7.23400,8907.00000,367.79999,0.00589", + "Zr":"6.73400,7.60300,9120.00000,405.20001,0.00576", + "Nb":"6.90100,7.79100,9333.00000,442.70001,0.00559", + "Mo":"6.42400,7.24800,9545.00000,480.20001,0.00538", + "Tc":"6.79900,7.67100,9756.00000,517.59998,0.00532", + "Ru":"6.10900,6.88700,9966.00000,555.09998,0.00515", + "Rh":"5.92400,6.67700,10180.00000,592.50000,0.00492", + "Pd":"5.23800,5.90000,10380.00000,630.00000,0.00476", + "Ag":"5.34500,6.03800,6790.00000,397.79999,0.01676", + "Cd":"5.81400,6.55400,10800.00000,355.50000,0.00463", + "In":"6.22900,7.02400,11010.00000,370.89999,0.00454", + "Sn":"6.40900,7.22700,11210.00000,386.39999,0.00447", + "Sb":"7.50000,8.48000,8608.00000,348.00000,0.00907", + "Te":"6.97900,7.87100,11620.00000,392.39999,0.00440", + "I":"7.72500,8.71600,11830.00000,394.79999,0.00438", + "Xe":"8.33700,9.42500,10510.00000,269.60001,0.00621", + "Cs":"7.28700,8.21800,12230.00000,399.70001,0.00445", + "Ba":"7.89900,8.91100,12430.00000,402.10001,0.00451", + "La":"8.04100,9.07100,12630.00000,404.50000,0.00454", + "Ce":"7.48800,8.44400,12830.00000,406.89999,0.00442", + "Pr":"7.29100,8.21900,13030.00000,409.29999,0.00430", + "Nd":"7.09800,8.00000,13230.00000,411.79999,0.00418", + "Pm":"6.90900,7.78600,13430.00000,414.20001,0.00406", + "Sm":"6.72800,7.58000,13620.00000,416.60001,0.00398", + "Eu":"6.55100,7.38000,13820.00000,419.00000,0.00388", + "Gd":"6.73900,7.59200,14020.00000,421.39999,0.00386", + "Tb":"6.21200,6.99600,14210.00000,423.89999,0.00372", + "Dy":"5.51700,6.21000,14400.00000,426.29999,0.00363", + "Ho":"5.22000,5.87400,14600.00000,428.70001,0.00350", + "Er":"5.07100,5.70600,14790.00000,433.00000,0.00341", + "Tm":"4.92600,5.54200,14980.00000,433.50000,0.00334", + "Yb":"4.78800,5.38600,15170.00000,435.89999,0.00329", + "Lu":"4.89300,5.50500,15360.00000,438.29999,0.00324", + "Hf":"5.02800,5.65700,15550.00000,440.79999,0.00320", + "Ta":"4.73800,5.32900,15740.00000,443.20001,0.00319", + "W":"4.58700,5.16000,15410.00000,415.29999,0.00341", + "Re":"5.20100,5.85100,16120.00000,441.60001,0.00312", + "Os":"5.07100,5.70400,16300.00000,440.89999,0.00308", + "Ir":"4.94600,5.56300,16490.00000,440.10001,0.00296", + "Pt":"4.47700,5.03400,16670.00000,439.29999,0.00287", + "Au":"4.84400,5.45800,7852.00000,975.79999,0.02077", + "Hg":"4.30700,4.84300,17040.00000,487.79999,0.00288", + "Tl":"4.72300,5.31100,17220.00000,537.00000,0.00291", + "Pb":"5.31900,5.98200,17400.00000,586.29999,0.00287", + "Bi":"5.95600,6.70000,17800.00000,677.00000,0.00266", + "Po":"6.15800,6.92800,17770.00000,586.29999,0.00281", + "At":"6.20300,6.97900,17950.00000,586.29999,0.00278", + "Rn":"6.18100,6.95400,18120.00000,586.29999,0.00275", + "Fr":"6.94900,7.82000,18300.00000,586.29999,0.00274", + "Ra":"7.50600,8.44800,18480.00000,586.29999,0.00273", + "Ac":"7.64800,8.60900,18660.00000,586.29999,0.00270", + "Th":"7.71100,8.67900,18830.00000,586.29999,0.00264", + "Pa":"7.40700,8.33600,19010.00000,586.29999,0.00260", + "U":"7.29000,8.20400,19180.00000,586.29999,0.00267", + "":"0.00000,0.00000,0.00000,0.00000,0.00000" + }; + return Stopicru[Element]; +} + + +function rho_fun() +{ + var irow = this.parentNode.parentNode.rowIndex; + var caller = this.id; + var chem = document.getElementById(caller).value; + var rhoLi = "L"+irow+"rho"; + + var rhos = { + "NbN":8.47, + "Bi2Se3":7.51, + "La2CuO4": 7.08, + "La1.84Sr0.16CuO4": 6.94, + "N2":1.145, + "ZnO":5.61, + "ZnSe":5.26, + "ZnS":4.09, + "ZrO":6.0, + "Gd3Ga5O12":7.08, + "MgAl2O4":3.60, + "NdGaO3":7.57, + "YAlO3":4.88, + "Y3Al5O12":4.55, + "LiF":2.60, + "CaF2":3.18, + "BaFe":4.83, + "MgF2":3.18, + "SiO2":2.65, + "TiO2":4.26, + "KTaO3":6.967, + "LaAlO3":6.70, + "Al2O3":3.98, + "SrTiO3":5.12, + "SrLaGaO4":6.389, + "SrLaAlO4":5.924, + "NbSe2":6.30, + "MgO":3.58, + "YBa2Cu3O7":6.54, + "GaAs":5.32, + "C60":1.65, + "H":0.08, + "He":0.12, + "Li":0.53, + "Be":1.85, + "B":2.34, + "C":2.26, + "N":1.03, + "O":2.00, + "F":1.11, + "Ne":1.50, + "Na":0.97, + "Mg":1.74, + "Al":2.7, + "Si":2.33, + "P":1.00, + "S":2.07, + "Cl":2.03, + "Ar":1.77, + "K":0.86, + "Ca":1.55, + "Sc":2.99, + "Ti":4.54, + "V":6.11, + "Cr":7.19, + "Mn":7.43, + "Fe":7.87, + "Co":8.9, + "Ni":8.9, + "Cu":8.96, + "Zn":7.13, + "Ga":5.91, + "Ge":5.32, + "As":5.72, + "Se":4.79, + "Br":3.14, + "Kr":3.10, + "Rb":1.53, + "Sr":2.54, + "Y":4.47, + "Zr":6.51, + "Nb":8.57, + "Mo":10.22, + "Tc":11.5, + "Ru":12.37, + "Rh":12.41, + "Pd":12.02, + "Ag":10.5, + "Cd":8.65, + "In":7.31, + "Sn":7.31, + "Sb":6.68, + "Te":6.24, + "I":4.93, + "Xe":3.80, + "Cs":1.90, + "Ba":3.59, + "La":6.15, + "Ce":6.77, + "Pr":6.77, + "Nd":7.01, + "Pm":7.22, + "Sm":7.52, + "Eu":5.24, + "Gd":7.9, + "Tb":8.23, + "Dy":8.55, + "Ho":8.8, + "Er":9.07, + "Tm":9.32, + "Yb":6.9, + "Lu":9.84, + "Hf":13.31, + "Ta":16.65, + "W":19.35, + "Re":21.04, + "Os":22.6, + "Ir":22.4, + "Pt":21.45, + "Au":19.32, + "Hg":13.55, + "Tl":11.85, + "Pb":11.35, + "Bi":9.75, + "Po":9.3, + "Th":11.72, + "Pa":15.4, + "U":18.95, + "":"" + } + document.getElementById(rhoLi).value = rhos[chem]; +} + +function openTab(event, tabName) { + // Declare all variables + var i, tabcontent, tablinks; + // Get all elements with class="tabcontent" and hide them + tabcontent = document.getElementsByClassName("tabcontent"); + for (i = 0; i < tabcontent.length; i++) { + tabcontent[i].style.display = "none"; + } + + // Get all elements with class="tablinks" and remove the class "active" + tablinks = document.getElementsByClassName("tablinks"); + for (i = 0; i < tablinks.length; i++) { + tablinks[i].className = tablinks[i].className.replace(" active", ""); + } + + // Show the current tab, and add an "active" class to the button that opened the tab + document.getElementById(tabName).style.display = "block"; + event.currentTarget.className += " active"; +} + +function adjust_table() +{ + var numLayer = document.getElementById("numLayer").value; + var LTable = document.getElementById("LTable"); + var Nrows = LTable.rows.length; + + var Comps = []; + var Rhos = []; + var Ds = []; + +// Need to loop to get the right number of rows when reloading + if (numLayer >= Nrows) { + for (i = Nrows;i<=numLayer;i++) { + var row = LTable.insertRow(i); + var Li = row.insertCell(0); + Li.innerHTML = i; + var compL = row.insertCell(1); + var compCell = document.createElement("input"); + compCell.id = "L"+i+"Comp"; + compCell.name = "L"+i+"Comp"; + compCell.size = 15; + compCell.onchange = rho_fun; + if (Comps[i-1]) {compCell.value = Comps[i-1];}else{compCell.value = 'SrTiO3';} + compL.appendChild(compCell); + var rhoL = row.insertCell(2); + var rhoCell = document.createElement("input"); + rhoCell.id = "L"+i+"rho"; + rhoCell.name = "L"+i+"rho"; + rhoCell.size = 5; + rhoL.appendChild(rhoCell); + if (Rhos[i-1]) {rhoCell.value = Rhos[i-1];}else{rhoCell.value = '5.12';} + var thickL = row.insertCell(3); + var thickCell = document.createElement("input"); + thickCell.id = "L"+i+"d"; + thickCell.name = "L"+i+"d"; + thickCell.size = 7; + thickL.appendChild(thickCell); + if (Ds[i-1]) {thickCell.value = Ds[i-1];}else{thickCell.value = '10000';} + } + } else { + for (i = Nrows-1;i>numLayer;i--) { + LTable.deleteRow(i); + } + } +} + +function adjust_scans() +{ + // Deal with scans checkbox and type + var scanSeq = document.getElementById("scanSeq").checked; + var sender = document.getElementById("scanSeq"); + var scanType = document.getElementById("scanType").value; + // consider only if scans checkbox is checked + if (scanSeq) { + // Which type of scan + if (scanType == "scanLoop") { + ShowHide(1,'ScansTable'); + ShowHide(0,'ScansLine'); + } else { + ShowHide(1,'ScansLine'); + ShowHide(0,'ScansTable'); + } + } else { + // Hide both + ShowHide(0,'ScansTable'); + ShowHide(0,'ScansLine'); + } +} + +function ProjSmartDefaults() +{ + var Proj = document.getElementById("ProjType").value; + var sigEnergy = document.getElementById("sigEnergy"); + var sigAngle = document.getElementById("sigAngle"); + + if (Proj == "Muon") { + sigEnergy.value = "450"; + sigAngle.value = "15"; + } else { + sigEnergy.value = "0"; + sigAngle.value = "0"; + } +} + +function ProjNumberLimit() +{ + var numberProj = document.getElementById("numberProj").value; + + if (numberProj > 5000) { + alert("Maximum number is 5000"); + document.getElementById("numberProj").value = 5000; + } +} + + +function ShowHide(onoff,item) { +// this function can switch item to visible/hidden onoff=1/0 + if(onoff){ +// document.getElementById(item).style.display = 'block'; + document.getElementById(item).style.visibility = "visible"; + } else { +// document.getElementById(item).style.display = 'none'; + document.getElementById(item).style.visibility = "hidden"; + } +} + +function prep_cfg(toggle) { + // This function collects various values and returns + // toggle=1 : returns object with all values + // toggle!=1 : returns string containing cfg file + let TrimSPcfg = ""; + let strtmp = ""; + let valtmp = ""; + + let All = new Object(); + + // Prepare Layers section + let LayersSec = "[Layers]\n"; + let numLayer = document.getElementById("numLayer").value; + All['numLayer']=numLayer; + LayersSec = LayersSec + "numLayer="+numLayer+"\n"; + for (i = 1;i<=numLayer;i++) { + strtmp = "L"+i+"Comp"; + valtmp = document.getElementById(strtmp).value; + All[strtmp]=valtmp; + LayersSec = LayersSec + strtmp +"="+ valtmp+"\n"; + strtmp = "L"+i+"rho"; + valtmp = document.getElementById(strtmp).value; + All[strtmp]=valtmp; + LayersSec = LayersSec + strtmp +"="+ valtmp+"\n"; + strtmp = "L"+i+"d"; + valtmp = document.getElementById(strtmp).value; + All[strtmp]=valtmp; + LayersSec = LayersSec + strtmp +"="+ valtmp+"\n"; + } + + // Prepare projectile parameters section + let parProj = ["workPath","fileNamePrefix","ProjType","numberProj","z0","dz","valEnergy","sigEnergy","valAngle","sigAngle","ranSeed"]; + let ProjSec = "[ProjectileParameters]\n"; + for (key of parProj) { + All[key]= document.getElementById(key).value; + ProjSec = ProjSec + key + "=" + All[key] + "\n"; + } + + // Prepare Files section + let FilesSec = "[Files]\n"; + FilesSec = FilesSec + "fileNamePrefix="+All["fileNamePrefix"]+"\nworkPath="+All["workPath"]+"\n"; + + // Prepare ScanSequence section + let ScanSec = "[ScanSequence]\n"; + strtmp = "scanSeq"; + valtmp = 1*(document.getElementById(strtmp).checked); + All[strtmp]=valtmp; + ScanSec = ScanSec + strtmp +"="+ valtmp+"\n"; + let parScan = ["comboScan","scanType","scanFrom","scanStep","scanTo","scanList","scanListdz"]; + for (key of parScan) { + All[key]= document.getElementById(key).value; + ScanSec = ScanSec + key + "=" + All[key] + "\n"; + } + + // Collect other parameters + let parOther = ["parEF", "parESB", "parSHEATH", "parERC", "parRD", "parCA", "parKK0", "parKK0R", "parKDEE1", "parKDEE2", "parIPOT", "parIPOTR", "parIRL"]; + for (key of parOther) { + All[key]= document.getElementById(key).value; + } + + // Construct full content of cfg file + TrimSPcfg = FilesSec + LayersSec + ProjSec + ScanSec; + if (toggle) { + return All; + } else { + return TrimSPcfg; + } +} + +function setValues(content) { + // This function takes cfg file content and substitutes values in the GUI + // Split file content into lines + var event = new Event('change'); + var lines = content.toString().split('\n'); + // Remove comment lines, empty lines and those starting with "[" + var PATTERN= /^(?!\[)(?!\#)(\S)/, + flines = lines.filter(function (str) {return PATTERN.test(str);}); + for (var i=0; i'); + win.document.write('
'); + win.document.write(''); + win.addEventListener('resize', sizePlot); + win.document.close(); + var plotDiv=win.document.getElementById("newPlot"); + + // Extract energies from run files if available + var files= new Object(); + var Es = []; + for (let i=0;i'); + win.document.write('
'); + win.document.write(''); + win.addEventListener('resize', sizePlot); + win.document.close(); + var plotDiv=win.document.getElementById("newPlot"); + + var [cfort,cdata]= readDatFile(filename); + let lyrs = [6]; // back scattered muons + for (let ilayer=18;ilayer'); + win.document.write('
'); + win.document.write(''); + win.addEventListener('resize', sizePlot); + win.document.close(); + var plotDiv=win.document.getElementById("newPlot"); + + let [cfort,cdata]= readDatFile(filename); + let mean = cdata[10]; + let strag = cdata[11]; + for (let i=0; i { + // console.log(output); + // }); +} + diff --git a/ZGUI.css b/ZGUI.css new file mode 100644 index 0000000..36482d3 --- /dev/null +++ b/ZGUI.css @@ -0,0 +1,177 @@ +* { + box-sizing: border-box; +} + +td { + white-space: nowrap; +} + +.guitable { + background-color: #DDDDDD; + border: 1px solid #000000; + /* border-collapse: collapse; */ + border-radius: 10px; + border: none; + border-spacing: 0px; + padding: 5px; + margin-left: auto; + margin-right: auto; + margin-top: 0.5em; + margin-bottom: 0.5em; +} +.guitable tr:last-child td:first-child { + border-bottom-left-radius: 12px; +} +.guitable tr:last-child td:last-child { + border-bottom-right-radius: 12px; +} +.guitable tr:first-child td:first-child { + border-top-left-radius: 12px; +} +.guitable tr:first-child td:last-child { + border-top-right-radius: 12px; +} +.guitable tr:nth-child(odd) { + background-color: #DDDDDD; +} +.guitable tr:nth-child(even) { + background-color: #DDDDDD; +} + +/* For mobile phones: */ +[class*="col-"] { + width: 100%; +} + +@media only screen and (min-width: 700px) { + /* For tablets: */ + .col-s-1 {width: 50%;background-color: #DDDDDD;} + .col-s-2 {width: 50%;background-color: #DDDDDD;} + .col-s-full {width: 100%;background-color: #F2F2F2;} + [class*="col-"] { + width: 100%; + } + +@media only screen and (min-width: 990px) { + /* For desktop: */ + .col-1 {width: 50%;background-color: #F2F2F2;} + .col-2 {width: 50%;background-color: #F2F2F2;} + .col-full {width: 100%;background-color: #F2F2F2;} +} + +[class*="col-"] { + float: left; + padding: 5px; + border: none; +} + +.row::after { + content: ""; + clear: both; + display: table; +} + +.group_name { + padding-left:1em; + padding-right:1em; + font-size:105%; + font-weight:bold; + width: 1%; + white-space: nowrap; + /* text-align: center; */ +} +.yellow_td { + padding-left:1em; + padding-right:1em; + background-color: yellow; + width: 1%; + white-space: nowrap; +} +.gray_td { + padding-left:1em; + padding-right:1em; + background-color: gray; + width: 1%; + white-space: nowrap; +} +.nocol_td { + padding-left:1em; + padding-right:1em; + width: 1%; + white-space: nowrap; +} + +/* Style the tab */ +.tab { + overflow: hidden; + border: 1px solid #ccc; + background-color: #f1f1f1; +} + +/* Style the buttons that are used to open the tab content */ +.tab button { + background-color: inherit; + float: left; + border: none; + outline: none; + cursor: pointer; + padding: 14px 16px; + transition: 0.3s; + font-size:105%; + font-weight:bold; +} + +/* Change background color of buttons on hover */ +.tab button:hover { + background-color: #ddd; +} + +/* Create an active/current tablink class */ +.tab button.active { + background-color: #ccc; +} + +/* Style the tab content */ +.tabcontent { + display: none; + padding: 6px 12px; + border: 1px solid #ccc; + border-top: none; +} + +.tabcontent { + animation: fadeEffect 1s; /* Fading effect takes 1 second */ +} + +/* Go from zero to full opacity */ +@keyframes fadeEffect { + from {opacity: 0;} + to {opacity: 1;} +} + +/* Chrome, Safari, Opera */ +@-webkit-keyframes example { + 0% {background-color:red; left:20px; top:0px;} + 25% {background-color:orange; left:25px; top:0px;} + 50% {background-color:green; left:30px; top:0px;} + 75% {background-color:orange; left:25px; top:0px;} + 100% {background-color:red; left:20px; top:0px;} +} + +/* Standard syntax */ +@keyframes example { + 0% {background-color:red; left:20px; top:0px;} + 25% {background-color:orange; left:25px; top:0px;} + 50% {background-color:green; left:30px; top:0px;} + 75% {background-color:orange; left:25px; top:0px;} + 100% {background-color:red; left:20px; top:0px;} +} + +#myBar { + width: 10%; + height: 30px; + background-color: #4CAF50; + text-align: center; /* To center it horizontally (if you want) */ + line-height: 30px; /* To center it vertically */ + color: white; +} diff --git a/main.js b/main.js new file mode 100644 index 0000000..d2e33f8 --- /dev/null +++ b/main.js @@ -0,0 +1,232 @@ +const { app, BrowserWindow, Menu, dialog, ipcMain, fs } = require('electron') + +function createWindow () { + const win = new BrowserWindow({ + width: 950, + height: 580, + webPreferences: { + nodeIntegration: true, + nativeWindowOpen: true + } + }) + + + const template = [ + { + label: 'File', + submenu: [ + { + label: 'Open', + accelerator: 'CmdOrCtrl+O', + click () { + dialog.showOpenDialog(win, + { title : "Load configuration file", + defaultPath : "./", + //buttonLabel : "Custom button", + filters :[ + {name: 'Config file type', extensions: ['cfg']}, + ], + properties: ['openFile']} + ).then(result => { + console.log(result.canceled); + console.log(result.filePaths); + if (!result.canceled) { + var focusedWindow = BrowserWindow.getFocusedWindow(); + focusedWindow.webContents.send('openFile',result.filePaths); + } + }).catch(err => { + console.log(err); + }) + } + }, + { + label: 'Select Folder...', + accelerator: 'CmdOrCtrl+F', + click () { + dialog.showOpenDialog(win, + { title: "Select folder", + defaultPath : "./", + properties:["openDirectory"]} + ).then(result => { + console.log(result.filePaths) + var focusedWindow = BrowserWindow.getFocusedWindow(); + focusedWindow.webContents.send('selectFolder',result.filePaths); + }).catch(err => { + console.log(err); + }) + } + }, + { + label: 'Save', + accelerator: 'CmdOrCtrl+S', + click () { + var focusedWindow = BrowserWindow.getFocusedWindow(); + focusedWindow.webContents.send('saveFile',''); + } + }, + { + label: 'Save As...', + accelerator: 'CmdOrCtrl+Shift+S', + click () { + dialog.showSaveDialog(win, + { title : "Save configuration file", + defaultPath : "./", + filters :[ + {name: 'Config file type', extensions: ['cfg']}, + {name: 'All Files', extensions: ['*']} + ], + properties: ['showOverwriteConfirmation']} + ).then(result => { + var focusedWindow = BrowserWindow.getFocusedWindow(); + focusedWindow.webContents.send('saveFile',result.filePath); + }).catch(err => { + console.log(err); + }) + } + }, + { + label: 'Print', + accelerator: 'CmdOrCtrl+P', + click () { + var focusedWindow = BrowserWindow.getFocusedWindow(); + const options = {}; + focusedWindow.webContents.print(options, (success, errorType) => { + if (!success) console.log(errorType) + }) + } + }, + { + role: 'quit' + } + ] + }, + { + role: 'editMenu' + }, + { + label: 'Plot', + submenu: [ + { + label: 'Plot Profiles', + //accelerator: 'CmdOrCtrl+P P', + click () { + dialog.showOpenDialog(win, + { title : "Select rge files", + filters :[ + {name: 'Profile file type', extensions: ['rge']}, + {name: 'All Files', extensions: ['*']} + ], + properties: ['openFile', 'multiSelections']} + ).then(result => { + console.log(result.canceled); + console.log(result.filePaths); + if (!result.canceled) { + var focusedWindow = BrowserWindow.getFocusedWindow(); + focusedWindow.webContents.send('plotProf',result.filePaths); + } + }).catch(err => { + console.log(err); + }) + } + }, + { + label: 'Plot Fractions', + //accelerator: 'CmdOrCtrl+P F', + click () { + dialog.showOpenDialog(win, + { title : "Select sequence file", + filters :[ + {name: 'Sequence file type', extensions: ['dat']}, + {name: 'All Files', extensions: ['*']} + ], + properties: ['openFile']} + ).then(result => { + console.log(result.canceled); + console.log(result.filePaths); + if (!result.canceled) { + var focusedWindow = BrowserWindow.getFocusedWindow(); + focusedWindow.webContents.send('plotFrac',result.filePaths); + } + }).catch(err => { + console.log(err); + }) + } + }, + { + label: 'Plot Mean', + //accelerator: 'CmdOrCtrl+P M', + click () { + dialog.showOpenDialog(win, + { title : "Select sequence file", + filters :[ + {name: 'Sequence file type', extensions: ['dat']}, + {name: 'All Files', extensions: ['*']} + ], + properties: ['openFile']} + ).then(result => { + console.log(result.canceled); + console.log(result.filePaths); + if (!result.canceled) { + var focusedWindow = BrowserWindow.getFocusedWindow(); + focusedWindow.webContents.send('plotMean',result.filePaths); + } + }).catch(err => { + console.log(err); + }) + } + } + ] + }, + { + role: 'viewMenu' + }, + { + role: 'windowMenu' + }, + { + role: 'help', + submenu: [ + { + role: 'about' + }, + { + label: 'Learn More', + click () { require('electron').shell.openExternal('http://electron.atom.io') } + } + ] + } + ] + const menu = Menu.buildFromTemplate(template) + Menu.setApplicationMenu(menu) + + win.loadFile('TrimSP.html'); + // Comment the following line to start without Dev + // win.openDevTools(); +} + +app.whenReady().then(createWindow) + +app.on('window-all-closed', () => { + if (process.platform !== 'darwin') { + app.quit() + } +}) + +app.on('activate', () => { + if (BrowserWindow.getAllWindows().length === 0) { + createWindow() + } +}) + +ipcMain.on('folderSelect', (event) => { + dialog.showOpenDialog({ title: "Select folder", + defaultPath : "./", + properties:["openDirectory"]} + ).then(result => { + console.log(result.filePaths) + var focusedWindow = BrowserWindow.getFocusedWindow(); + focusedWindow.webContents.send('selectFolder',result.filePaths); + }).catch(err => { + console.log(err); + }) +}); diff --git a/myplots.js b/myplots.js new file mode 100644 index 0000000..31ea5e6 --- /dev/null +++ b/myplots.js @@ -0,0 +1,115 @@ +const Plotly = require('plotly.js-dist'); + +function Plot_xy(plotdiv,x,y,labels){ + // Plot (x,y) scatter with x/ylabels + // place generated plot in div named plotdiv + //var plotDiv = document.getElementById(plotdiv); + + let xlable = ''; + let ylable = ''; + let legend = ''; + + + // labels are arranged as xlable, ylabel, legend + if (labels[0]) xlabel=labels[0]; + if (labels[1]) ylabel=labels[1]; + if (labels[2]) legend=labels[2]; + + let traces = [{ + x: x, + y: y, + mode: 'lines+markers', + line: {shape: 'spline'}, + name: legend + }]; + + let layout = { + autosize: true, + xaxis: {title: xlabel}, + yaxis: {title: ylabel} + } + + Plotly.plot(plotdiv, traces, layout); + // Resize + if (plotdiv == "plotRge") resizePl(1); + if (plotdiv == "plotFrac") resizePl(2); +}; + +function Plot_xyerr(plotdiv,x, y,dy,xlabel,ylabel){ + // Plot (x,y) scatter with x/ylabels + // place generated plot in div named plotdiv + // and y error bars in dy + var traces = [{ + x: x, + y: y, + mode: 'lines+markers', + error_y: { + type: 'data', + array : dy, + visible: true + }, + }]; + + var layout = { + xaxis: {title: xlabel}, + yaxis: {title: ylabel} + } + + Plotly.plot(plotdiv, traces, layout); +}; + +function Plot_xyerrpm(plotdiv,x, y,dyp,dym,xlabel,ylabel){ + // Plot (x,y) scatter with x/ylabels + // place generated plot in div named plotdiv + // and aymmetric y error bars in dyp and dym + var plotDiv = document.getElementById("plot"); + var traces = [{ + x: x, + y: y, + mode: 'lines+markers', + error_y: { + type: 'data', + symmetric: false, + array : dyp, + arrayminus: dym, + visible: true + }, + }]; + + var layout = { + xaxis: {title: xlabel}, + yaxis: {title: ylabel} + } + + Plotly.plot(plotdiv,traces,layout); +}; + +function sizePlot(){ + var plotDiv=this.document.getElementById("newPlot"); + let newx=this.innerWidth-25; + let newy=this.innerHeight-25; + var update ={ + width: newx, + height: newy + }; + Plotly.relayout(plotDiv,update); +} + +function resizePl(flag){ + let newx=this.innerWidth/2-50; + let newy=this.innerHeight-85; + var plotDiv1=this.document.getElementById("plotRge"); + var plotDiv2=this.document.getElementById("plotFrac"); + var update ={ + width: newx, + height: newy + }; + if (flag == null) { + Plotly.relayout(plotDiv1,update); + Plotly.relayout(plotDiv2,update); + } else if (flag == 1) { + Plotly.relayout(plotDiv1,update); + } else if ( flag == 2) { + Plotly.relayout(plotDiv2,update); + } +} diff --git a/package-lock.json b/package-lock.json new file mode 100644 index 0000000..01bdb86 --- /dev/null +++ b/package-lock.json @@ -0,0 +1,5210 @@ +{ + "name": "TrimSP", + "version": "1.0.0", + "lockfileVersion": 1, + "requires": true, + "dependencies": { + "@electron-forge/async-ora": { + "version": "6.0.0-beta.57", + "resolved": "https://registry.npmjs.org/@electron-forge/async-ora/-/async-ora-6.0.0-beta.57.tgz", + "integrity": "sha512-pinf6bB5etIKNwFgMx2V+kwsFlkjU4mApALv0Jn/lmcH5dlAB4zPwuKTccC44xVO4pp/bV1HWb1XJ4lHVxYaJg==", + "dev": true, + "requires": { + "colors": "^1.4.0", + "debug": "^4.3.1", + "log-symbols": "^4.0.0", + "ora": "^5.0.0", + "pretty-ms": "^7.0.0" + } + }, + "@electron-forge/cli": { + "version": "6.0.0-beta.57", + "resolved": "https://registry.npmjs.org/@electron-forge/cli/-/cli-6.0.0-beta.57.tgz", + "integrity": 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button { + font-family: 'Open Sans', verdana, arial, sans-serif; } + .js-plotly-plot .plotly input:focus, .js-plotly-plot .plotly button:focus { + outline: none; } +.js-plotly-plot .plotly a { + text-decoration: none; } + .js-plotly-plot .plotly a:hover { + text-decoration: none; } +.js-plotly-plot .plotly .crisp { + shape-rendering: crispEdges; } +.js-plotly-plot .plotly .user-select-none { + -webkit-user-select: none; + -moz-user-select: none; + -ms-user-select: none; + -o-user-select: none; + user-select: none; } +.js-plotly-plot .plotly svg { + overflow: hidden; } +.js-plotly-plot .plotly svg a { + fill: #447adb; } +.js-plotly-plot .plotly svg a:hover { + fill: #3c6dc5; } +.js-plotly-plot .plotly .main-svg { + position: absolute; + top: 0; + left: 0; + pointer-events: none; } + .js-plotly-plot .plotly .main-svg .draglayer { + pointer-events: all; } +.js-plotly-plot .plotly .cursor-default { + cursor: default; } +.js-plotly-plot .plotly .cursor-pointer { + cursor: pointer; } +.js-plotly-plot .plotly .cursor-crosshair { + cursor: crosshair; } +.js-plotly-plot .plotly .cursor-move { + cursor: move; } +.js-plotly-plot .plotly .cursor-col-resize { + cursor: col-resize; } +.js-plotly-plot .plotly .cursor-row-resize { + cursor: row-resize; } +.js-plotly-plot .plotly .cursor-ns-resize { + cursor: ns-resize; } +.js-plotly-plot .plotly .cursor-ew-resize { + cursor: ew-resize; } +.js-plotly-plot .plotly .cursor-sw-resize { + cursor: sw-resize; } +.js-plotly-plot .plotly .cursor-s-resize { + cursor: s-resize; } +.js-plotly-plot .plotly .cursor-se-resize { + cursor: se-resize; } +.js-plotly-plot .plotly .cursor-w-resize { + cursor: w-resize; } +.js-plotly-plot .plotly .cursor-e-resize { + cursor: e-resize; } +.js-plotly-plot .plotly .cursor-nw-resize { + cursor: nw-resize; } +.js-plotly-plot .plotly .cursor-n-resize { + cursor: n-resize; } +.js-plotly-plot .plotly .cursor-ne-resize { + cursor: ne-resize; } +.js-plotly-plot .plotly .cursor-grab { + cursor: -webkit-grab; + cursor: grab; } +.js-plotly-plot .plotly .modebar { + position: absolute; + top: 2px; + right: 2px; } +.js-plotly-plot .plotly .ease-bg { + -webkit-transition: background-color 0.3s ease 0s; + -moz-transition: background-color 0.3s ease 0s; + -ms-transition: background-color 0.3s ease 0s; + -o-transition: background-color 0.3s ease 0s; + transition: background-color 0.3s ease 0s; } +.js-plotly-plot .plotly .modebar--hover > :not(.watermark) { + opacity: 0; + -webkit-transition: opacity 0.3s ease 0s; + -moz-transition: opacity 0.3s ease 0s; + -ms-transition: opacity 0.3s ease 0s; + -o-transition: opacity 0.3s ease 0s; + transition: opacity 0.3s ease 0s; } +.js-plotly-plot .plotly:hover .modebar--hover .modebar-group { + opacity: 1; } +.js-plotly-plot .plotly .modebar-group { + float: left; + display: inline-block; + box-sizing: border-box; + padding-left: 8px; + position: relative; + vertical-align: middle; + white-space: nowrap; } +.js-plotly-plot .plotly .modebar-btn { + position: relative; + font-size: 16px; + padding: 3px 4px; + height: 22px; + /* display: inline-block; including this breaks 3d interaction in .embed mode. 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