allow to enalbe wich parts of DKS to compile trough cmake flags
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Uldis Locans
@ -38,6 +38,18 @@ IF (Boost_FOUND)
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LINK_DIRECTORIES(${Boost_LIBRARY_DIRS})
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ENDIF (Boost_FOUND)
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#include OPAL, musrfit or pet kernels
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OPTION(DKS_FULL "Compile DKS with full library" OFF)
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OPTION(ENABLE_OPAL "Compile DKS with OPAL kernels" OFF)
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OPTION(ENABLE_MUSR "Compile DKS with musrfit kernels" OFF)
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OPTION(ENABLE_PET "Compile DKS with PET reconstruction kernels" OFF)
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IF (DKS_FULL)
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SET(ENABLE_OPAL ON)
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SET(ENABLE_MUSR ON)
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SET(ENABLE_PET ON)
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ENDIF(DKS_FULL)
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#find clFFT
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OPTION (ENABLE_AMD "Enable AMD libraries" OFF)
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IF (ENABLE_AMD)
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@ -2,18 +2,21 @@ INCLUDE_DIRECTORIES( ${CMAKE_SOURCE_DIR}/src )
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LINK_DIRECTORIES( ${CMAKE_SOURCE_DIR}/src )
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#chi square kernel tests
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ADD_EXECUTABLE(testChiSquareRT testChiSquareRT.cpp)
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TARGET_LINK_LIBRARIES(testChiSquareRT dks ${Boost_LIBRARIES} ${CLFFT_LIBRARIES})
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IF (ENABLE_MUSR)
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ADD_EXECUTABLE(testChiSquareRT testChiSquareRT.cpp)
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TARGET_LINK_LIBRARIES(testChiSquareRT dks ${Boost_LIBRARIES} ${CLFFT_LIBRARIES})
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ADD_EXECUTABLE(testChiSquareRTRandom testChiSquareRTRandom.cpp)
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TARGET_LINK_LIBRARIES(testChiSquareRTRandom dks ${Boost_LIBRARIES} ${CLFFT_LIBRARIES})
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ADD_EXECUTABLE(testChiSquareRTRandom testChiSquareRTRandom.cpp)
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TARGET_LINK_LIBRARIES(testChiSquareRTRandom dks ${Boost_LIBRARIES} ${CLFFT_LIBRARIES})
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IF (USE_UQTK)
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IF (USE_UQTK)
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ADD_EXECUTABLE(testChiSquareRTUQTK testChiSquareRTUQTK.cpp)
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TARGET_LINK_LIBRARIES(testChiSquareRTUQTK dks ${Boost_LIBRARIES} ${CLFFT_LIBRARIES} lreg UQTk quad bcs uqtktools cvode-2.6.0 dsfmt lbfgs uqtklapack uqtkslatec uqtkblas gfortran)
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ENDIF (USE_UQTK)
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#TARGET_LINK_LIBRARIES(testChiSquareRTUQTK dks ${Boost_LIBRARIES})
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ENDIF (USE_UQTK)
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#TARGET_LINK_LIBRARIES(testChiSquareRTUQTK dks ${Boost_LIBRARIES})
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#test to verify search functions
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ADD_EXECUTABLE(testSearch testSearch.cpp)
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TARGET_LINK_LIBRARIES(testSearch dks ${Boost_LIBRARIES} ${CLFFT_LIBRARIES})
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ENDIF (ENABLE_MUSR)
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#test to verify search functions
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ADD_EXECUTABLE(testSearch testSearch.cpp)
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TARGET_LINK_LIBRARIES(testSearch dks ${Boost_LIBRARIES} ${CLFFT_LIBRARIES})
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@ -35,13 +35,29 @@ ENDMACRO ()
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SET (DKS_BASEDIR_HDRS
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DKSBase.h
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DKSDefinitions.h
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DKSOPAL.h
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)
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SET (DKS_BASEDIR_SRCS
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DKSBase.cpp
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DKSOPAL.cpp
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)
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IF (USE_CUDA OR USE_OPENCL)
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#add opal to DKS if enable_opal is set
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IF (ENABLE_OPAL)
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SET (DKS_BASEDIR_HDRS
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${DKS_BASEDIR_HDRS}
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DKSOPAL.h
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)
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SET (DKS_BASEDIR_SRCS
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${DKS_BASEDIR_SRCS}
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DKSOPAL.cpp
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)
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ENDIF (ENABLE_OPAL)
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#and musrt to DKS if cuda or opencl is used and enable_musr is set
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IF ( (USE_CUDA OR USE_OPENCL) AND ENABLE_MUSR)
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SET (DKS_BASEDIR_HDRS
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${DKS_BASEDIR_HDRS}
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DKSBaseMuSR.h
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@ -51,9 +67,10 @@ IF (USE_CUDA OR USE_OPENCL)
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${DKS_BASEDIR_SRCS}
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DKSBaseMuSR.cpp
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)
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ENDIF (USE_CUDA OR USE_OPENCL)
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ENDIF ( (USE_CUDA OR USE_OPENCL) AND ENABLE_MUSR)
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IF (USE_CUDA)
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#add image reconstruction to DKS if cuda is used and enable_pet is set
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IF (USE_CUDA AND ENABLE_PET)
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SET (DKS_BASEDIR_HDRS
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${DKS_BASEDIR_HDRS}
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DKSImageReconstruction.h
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@ -63,7 +80,7 @@ IF (USE_CUDA)
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${DKS_BASEDIR_SRCS}
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DKSImageReconstruction.cpp
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)
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ENDIF (USE_CUDA)
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ENDIF (USE_CUDA AND ENABLE_PET)
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ADD_HEADERS (${DKS_BASEDIR_HDRS})
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ADD_SOURCES (${DKS_BASEDIR_SRCS})
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@ -1,35 +1,25 @@
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SET (_HDRS
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CudaBase.cuh
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CudaFFT.cuh
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CudaGreensFunction.cuh
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CudaChiSquare.cuh
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CudaCollimatorPhysics.cuh
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CudaImageReconstruction.cuh
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CudaChiSquareRuntime.cuh
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)
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SET (_HDRS CudaBase.cuh)
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SET (_SRCS CudaBase.cu)
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SET (_SRCS
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CudaBase.cu
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CudaFFT.cu
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CudaGreensFunction.cu
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CudaChiSquare.cu
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CudaCollimatorPhysics.cu
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CudaImageReconstruction.cu
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CudaChiSquareRuntime.cu
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)
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IF (ENABLE_OPAL)
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SET (_HDRS ${_HDRS} CudaFFT.cuh CudaGreensFunction.cuh CudaCollimatorPhysics.cuh)
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SET (_SRCS ${_SRCS} CudaFFT.cu CudaGreensFunction.cu CudaCollimatorPhysics.cu)
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ENDIF (ENABLE_OPAL)
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#INCLUDE_DIRECTORIES (
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# ${CMAKE_CURRENT_SOURCE_DIR}
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#)
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IF (ENABLE_MUSR)
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SET (_HDRS ${_HDRS} CudaChiSquareRuntime.cuh)
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SET (_SRCS ${_SRCS} CudaChiSquareRuntime.cu)
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SET (_KERNELS NVRTCKernels/CudaChiSquareKernel.cu)
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ENDIF (ENABLE_MUSR)
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IF (ENABLE_PET)
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SET (_HDRS ${_HDRS} CudaImageReconstruction.cuh)
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SET (_SRCS ${_SRCS} CudaImageReconstruction.cu)
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ENDIF (ENABLE_PET)
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ADD_SOURCES(${_SRCS})
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ADD_HEADERS(${_HDRS})
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INSTALL(FILES ${_HDRS} DESTINATION include/CUDA)
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SET (_KERNELS
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NVRTCKernels/CudaChiSquareKernel.cu
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)
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INSTALL(FILES ${_KERNELS} DESTINATION include/CUDA/NVRTCKernels)
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@ -1,19 +1,24 @@
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SET (_SRCS
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MICBase.cpp
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SET (_SRCS MICBase.cpp)
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SET (_HDRS MICBase.h)
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IF (ENABLE_OPAL)
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SET (_SRCS
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${_SRCS}
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MICChiSquare.cpp
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MICFFT.cpp
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MICGreensFunction.cpp
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MICCollimatorPhysics.cpp
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)
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SET (_HDRS
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MICBase.h
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SET (_HDRS
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${_HDRS}
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MICChiSquare.h
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MICFFT.h
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MICCollimatorPhysics.h
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MICGreensFunction.hpp
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MICMergeSort.h
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)
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ENDIF (ENABLE_OPAL)
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#INCLUDE_DIRECTORIES (
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# ${CMAKE_CURRENT_SOURCE_DIR}
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@ -1,46 +1,39 @@
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#dont include FFT, GreensFunction and CollimatorPhysics if clFFT and clRNG not found
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IF (ENABLE_AMD)
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SET (_HDRS OpenCLBase.h)
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SET (_SRCS OpenCLBase.cpp)
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SET (_KERNELS "")
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IF (ENABLE_MUSR)
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SET (_HDRS ${_HDRS} OpenCLChiSquareRuntime.h)
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SET (_SRCS ${_SRCS} OpenCLChiSquareRuntime.cpp)
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SET (_KERNELS OpenCLKernels/OpenCLChiSquareRuntime.cl)
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ENDIF (ENABLE_MUSR)
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IF (ENABLE_AMD AND ENABLE_OPAL)
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SET (_SRCS
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OpenCLBase.cpp
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${_SRCS}
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OpenCLFFT.cpp
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OpenCLChiSquare.cpp
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OpenCLCollimatorPhysics.cpp
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OpenCLChiSquareRuntime.cpp
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OpenCLGreensFunction.cpp
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)
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SET (_HDRS
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OpenCLBase.h
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${_HDRS}
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OpenCLFFT.h
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OpenCLChiSquare.h
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OpenCLCollimatorPhysics.h
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OpenCLChiSquareRuntime.h
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OpenCLGreensFunction.h
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)
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ELSE (ENABLE_AMD)
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SET (_SRCS
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OpenCLBase.cpp
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OpenCLChiSquare.cpp
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OpenCLChiSquareRuntime.cpp
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)
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SET (_HDRS
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OpenCLBase.h
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OpenCLChiSquare.h
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OpenCLChiSquareRuntime.h
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)
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ENDIF (ENABLE_AMD)
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SET (_KERNELS
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OpenCLKernels/OpenCLChiSquare.cl
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SET (_KERNELS
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${_KERNELS}
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OpenCLKernels/OpenCLFFT.cl
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OpenCLKernels/OpenCLFFTStockham.cl
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OpenCLKernels/OpenCLTranspose.cl
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OpenCLKernels/OpenCLCollimatorPhysics.cl
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OpenCLKernels/OpenCLChiSquareRuntime.cl
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OpenCLKernels/OpenCLGreensFunction.cl
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)
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ENDIF (ENABLE_AMD AND ENABLE_OPAL)
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ADD_SOURCES (${_SRCS})
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ADD_HEADERS (${_HDRS})
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