LEC-5422-Public/pyTrainSeg
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  • cb840fd890 restart segemntation as script when jupyter crashes master FISCHER Robert 2025-04-11 15:41:28 +02:00
  • f61c7a761b Merge branch 'master' of github.com:Pescatore23/pytrainseg FISCHER Robert 2025-04-11 15:21:18 +02:00
  • 8c022f7c99 automatically pick up crashed segmentation Fischer Robert 2025-04-11 15:20:45 +02:00
  • 9c26301a98 tested and ready to sue Fischer Robert 2025-04-11 10:04:15 +02:00
  • 742d1c57e0 deprecationm notice for PSI FISCHER Robert 2025-04-10 09:55:05 +02:00
  • e765007f1d successfully tested reducing the feature stack by 2 Fischer Robert 2025-04-10 09:50:45 +02:00
  • 1ae048e911 bugfixed stack reduction Fischer Robert 2025-04-09 16:22:11 +02:00
  • 093c73c53a routine chec for features to use FISCHER Robert 2025-04-09 15:22:58 +02:00
  • d001fb38df trained interlaces Fischer Robert 2025-04-09 14:47:13 +02:00
  • 23aeff81e9 practising with yarn Fischer Robert 2025-04-04 16:05:34 +02:00
  • 0a097a9f11 progessed witj example notebook until training works Fischer Robert 2025-04-03 12:15:05 +02:00
  • 19a8d256dd building up jupyter notebokk for woring Fischer Robert 2025-04-02 17:17:19 +02:00
  • 1a9237f9c9 update diff to first and last FISCHER Robert 2025-04-02 09:47:16 +02:00
  • de1dc2027f refactored into v2, missing jupyternotebook putting everything together FISCHER Robert 2025-03-31 16:42:06 +02:00
  • b373be5274 Add LICENSE fische_r 2024-10-02 13:40:39 +02:00
  • 723a8580d9 update readme fische_r 2024-04-23 09:07:25 +02:00
  • 55d4c3ab7f update readme fische_r 2024-04-22 15:22:38 +02:00
  • f5e608e227 Merge branch 'master' of https://gitlab.psi.ch/fische_r/pytrainseg fische_r 2024-02-29 13:31:06 +01:00
  • 98aa9904aa updated and commented example notebook fische_r 2024-02-29 13:26:52 +01:00
  • b08c900eb3 finished all segmentation, stored conda env config before update Fischer Robert 2024-02-08 10:27:12 +01:00
  • 5ad5465ef5 Update README.md fische_r 2023-11-06 16:26:28 +01:00
  • 9c1d2a9328 Update README.md fische_r 2023-11-06 16:25:29 +01:00
  • b2ae50ae5d updated example fische_r 2023-11-06 16:14:11 +01:00
  • e42ad75fa4 fix identation fische_r 2023-09-27 13:57:14 +02:00
  • e0a4b9dce4 catch excpetion when restariting client Fischer Robert 2023-09-27 13:55:45 +02:00
  • ce8ea3e800 reboot client by default Fischer Robert 2023-09-27 11:29:40 +02:00
  • a59e53ee44 sometimes only one worker returns fische_r 2023-09-27 09:36:46 +02:00
  • 109a7ce3c1 dont fetch first image fische_r 2023-09-26 14:14:05 +02:00
  • a9992ae653 create new cluster when rebooting client fische_r 2023-09-26 13:33:27 +02:00
  • f0f478b509 dont wait for workers fische_r 2023-09-26 11:18:30 +02:00
  • d3db57889e explicit reboot also when loading training iamge fische_r 2023-09-26 10:56:29 +02:00
  • 7d42d173bf explicit reboot of client Fischer Robert 2023-09-26 10:54:25 +02:00
  • 23bc3de8ba updated example notebook fische_r 2023-09-21 14:05:03 +02:00
  • 7e34e0a5fa Merge branch 'merge' into 'master' fische_r 2023-09-19 16:16:47 +02:00
  • c6952ebb6a Merge branch 'master' into 'merge' fische_r 2023-09-19 14:16:24 +00:00
  • 5d8c5d3a7a allow 4 phases and and reboot dask client if necessary fische_r 2023-09-19 16:12:39 +02:00
  • ad7c785948 Merge branch 'debugging_dask' Fischer Robert 2023-08-30 17:01:46 +02:00
  • 985bcc9073 updated readme to new loading scheme fische_r 2023-08-30 16:41:43 +02:00
  • ef6c236b10 updated example notebook with fixes after dask update fische_r 2023-08-29 11:01:48 +02:00
  • 8d983a7b27 restart client after every calculation Fischer Robert 2023-08-29 10:30:44 +02:00
  • b3a86fa36d restarting the client appears to be a working patch Fischer Robert 2023-08-15 16:17:05 +02:00
  • 3b6a4402a0 restart workers Fischer Robert 2023-08-14 10:40:33 +02:00
  • 339c70b27d restart workers fische_r 2023-08-12 13:17:31 +02:00
  • 445c03c4ab debugging future calculation fische_r 2023-08-11 17:03:36 +02:00
  • 737b81c177 bold attempt for bug fix fische_r 2023-08-11 09:49:03 +02:00
  • c9939fe640 delete future when done computing fische_r 2023-08-07 11:15:41 +02:00
  • d78f1c4aa0 added labelflag ugly patch fische_r 2023-08-04 16:31:21 +02:00
  • 2f3c2f666d convert xarray to numpy after compute fische_r 2023-08-04 15:04:27 +02:00
  • 82e9e97e9c appearantly you still have to call compute at the ende fische_r 2023-08-04 14:22:05 +02:00
  • 1047cd9dff temporarily removed difftofirst and started to remove deprecated stuff fische_r 2023-08-04 12:47:31 +02:00
  • 32e44c7321 pass client through class and functions fische_r 2023-08-04 12:35:49 +02:00
  • 634588f088 replace .compute() with client.scatter() and .result() fische_r 2023-08-04 12:31:34 +02:00
  • bb095b692e use dask-iamge for gaussian filter fische_r 2023-07-26 14:03:56 +02:00
  • 8c6e0dd03e reviewd readme fische_r 2023-06-06 09:35:09 +02:00
  • ff43d0c3a2 reviewd readme fische_r 2023-06-06 09:28:12 +02:00
  • 98e5724d9d reviewd readme fische_r 2023-06-06 09:21:29 +02:00
  • c2603774db reviewd readme fische_r 2023-06-06 09:20:59 +02:00
  • fe5102d7e4 drafted Readme fische_r 2023-06-06 09:17:32 +02:00
  • df6bd7aa8a drafted Readme fische_r 2023-06-06 09:17:07 +02:00
  • b8ad3b668d drafted Readme fische_r 2023-06-06 09:16:29 +02:00
  • a78c9e802d created readme fische_r 2023-06-05 16:23:14 +02:00
  • 2cd8fbd5bd directly put set into traing dict to not lose it if train() crashes fische_r 2023-05-15 15:56:01 +02:00
  • 693a41f318 by deafult dont use sigma 0 for hessian and gradient fische_r 2023-05-02 11:10:30 +02:00
  • ac2fac3f98 allows to switch on pixel coordinates as feature fische_r 2023-04-03 13:52:21 +02:00
  • e5b2d83d71 wait for persist to finish fische_r 2023-03-29 10:04:20 +02:00
  • 84c696f7e1 comment out pixel coordinates fische_r 2023-03-28 13:44:22 +02:00
  • ec4415d60b bug fix fische_r 2023-02-22 16:31:49 +01:00
  • 465600fcbb put interactive part in own file, to be tested fische_r 2023-02-21 14:27:43 +01:00
  • 80a0427251 gauss filter for temp min and diff fische_r 2023-02-21 10:38:44 +01:00
  • 9ecf26ac80 bug fix fische_r 2023-02-20 10:18:22 +01:00
  • 861b53491f more bugfixing fische_r 2023-02-17 14:47:55 +01:00
  • 43b6cf470e some bug fixes fische_r 2023-02-17 14:42:18 +01:00
  • ed5a18c738 training more robust against empty label iamges and bug fix fische_r 2023-02-17 14:18:41 +01:00
  • 56bd47091e major refactoring to optimize the usage of time independent features and some add. tweaks fische_r 2023-02-17 14:02:34 +01:00
  • 1511ec3736 removed std in favor of diff to temporal minimum fische_r 2023-02-17 11:07:32 +01:00
  • d270935fa6 removed some stuff from time stats (memory error) fische_r 2023-02-14 15:27:22 +01:00
  • b5e47a6ac2 reactivated rank-like filters and replaced dynamic rank with temporal pixelwise statistics2 fische_r 2023-02-14 13:42:08 +01:00
  • 6846179552 acitvate time mean, seems to be very fast effectiv fische_r 2023-02-13 16:36:19 +01:00
  • ead3eba3aa added full temporal mean as function, but not activated in the prepare() fische_r 2023-02-13 16:29:08 +01:00
  • 84908c3795 added pixel coordinate as feature Fischer Robert 2023-01-18 15:22:32 +01:00
  • ef919a2db3 Merge branch 'master' of https://gitlab.psi.ch/fische_r/pytrainseg Fischer Robert 2023-01-17 14:04:52 +01:00
  • e42052328c local copy Fischer Robert 2023-01-17 14:04:33 +01:00
  • 8c0cc68e57 TODO: store git sha Fischer Robert 2022-10-13 15:13:18 +02:00
  • 13f6fbfa2a worked around dask crashing/zombieing when fetching results Fischer Robert 2022-09-26 13:56:07 +02:00
  • 193ca64faf some bug fixes, but not yet there Fischer Robert 2022-09-16 14:53:22 +02:00
  • 942bad4eba training now working with very large datasets Fischer Robert 2022-09-06 16:03:02 +02:00
  • 0633b8a129 wpatched: when lazy cannot use originalà as reference for gauss with sig 0 Fischer Robert 2022-09-05 11:02:58 +02:00
  • 45f8074bbd making it fully lazy Fischer Robert 2022-09-01 17:33:22 +02:00
  • e77035eef5 segmenting lines for wood Fischer Robert 2022-08-24 15:50:23 +02:00
  • ca7f6b0677 worked again with wood Fischer Robert 2022-08-24 15:08:23 +02:00
  • 966af5bfaf update Fischer Robert 2022-08-22 08:55:49 +02:00
  • d44ab4c143 looks ok Fischer Robert 2022-08-18 17:12:37 +02:00
  • c350295d5c works neatly Fischer Robert 2022-08-18 16:20:56 +02:00
  • 44abe23af1 I think I have all Fischer Robert 2022-08-18 14:57:21 +02:00
  • 6630acfedc got it running, now allow clf savinf and full segmentation Fischer Robert 2022-08-18 11:40:45 +02:00
  • c48bdb1174 put all together, but ipycanvas not working on laptop fische_r 2022-08-18 11:06:46 +02:00
  • c8e40e4510 started training part fische_r 2022-08-17 17:10:25 +02:00
  • 8b9b292458 add notebook to test dask Fischer Robert 2022-08-17 14:08:54 +02:00
  • e9a9442556 bug with range elemnt in Hessian fische_r 2022-08-17 14:06:10 +02:00
  • cdd74c6d62 messed up with gauss 4d dict name fische_r 2022-08-17 14:04:51 +02:00