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ADD: rhel8 envs

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This commit is contained in:
germann_e
2024-10-29 17:13:11 +01:00
parent dff7377a21
commit d64194ccb3
9 changed files with 369 additions and 0 deletions
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1
env/rhel8/x86_64/admin/stable/spack.lock vendored Normal file
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spack:
concretizer:
unify: false
config:
install_tree:
root: $spack/opt/spack/stable
definitions:
- compilers:
- gcc@=12.3.0
- intel-oneapi-compilers@=2024.1.0
- gcc_4.8.5:
- fpart@1.6.0/lcygtky
- gcc_12.3.0_openmpi:
- opal@master/l4dkgyf
include:
- $spack/../spack-psi/env/rhel7/$target_family/sysconfigs/packages.yaml
- $spack/../spack-psi/env/rhel7/$target_family/sysconfigs/compilers.yaml
mirrors:
local_psi: file:///afs/psi.ch/software/spack/testing
modules:
default:
roots:
tcl: $spack/opt/spack/stable/modulefiles
specs:
- matrix:
- [$compilers]
- ['%gcc@4.8.5']
- matrix:
- [$gcc_4.8.5]
- ['%gcc@4.8.5']
- matrix:
- [$gcc_12.3.0_openmpi]
- [^openmpi%gcc]
- ['%gcc@12.3.0']
view: false

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---
spack:
concretizer:
unify: false
config:
install_tree:
root: $spack/opt/spack/testing
# Strongly adviced to avoid problems with buildcaches
padded_length: 256
include:
- $spack/../spack-psi/env/rhel7/$target_family/sysconfigs/packages.yaml
- $spack/../spack-psi/env/rhel7/$target_family/sysconfigs/compilers.yaml
mirrors:
local_psi: file:///afs/psi.ch/software/spack/testing
modules:
default:
roots:
tcl: $spack/opt/spack/testing/modulefiles
specs: []
view: false

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---
spack:
concretizer:
unify: false
config:
install_tree:
root: $spack/opt/spack/unstable
definitions:
- gcc_12.3.0:
- cellranger@8.0.1/6h63gx
- fastqc@0.12.1/dkkcfu5
- ffbidx@main/vyjua6z
- sratoolkit@3.1.1/2szh2jy
- star@2.7.11a/icumpki
- gcc_12.3.0_openmpi:
- cp2k@2024.1/2bayb45 # ~cuda
- cp2k@2024.1/exkrpix # +cuda
- quantum-espresso@7.3.1/yuxkoz2 # hdf5=parallel
- py-alphafold@2.3.2/rrfdppp # ~cuda
- py-alphafold@2.3.2/tqziprv # +cuda
- oneapi_2024.1.0_openmpi:
- gromacs@2024.1/pi5t2pp # ~cuda
include:
- $spack/../spack-psi/env/rhel8/$target_family/sysconfigs/packages.yaml
- $spack/../spack-psi/env/rhel8/$target_family/sysconfigs/compilers.yaml
mirrors:
local_psi: file:///afs/psi.ch/software/spack/testing
modules:
default:
roots:
tcl: $spack/opt/spack/unstable/modulefiles
specs:
- matrix:
- [$gcc_12.3.0]
- ['%gcc@12.3.0']
- matrix:
- [$gcc_12.3.0_openmpi]
- [^openmpi%gcc]
- ['%gcc@12.3.0']
- matrix:
- [$oneapi_2024.1.0_openmpi]
- [^openmpi%oneapi]
- ['%oneapi@2024.1.0']
view: false

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env/rhel8/x86_64/sysconfigs/compilers.yaml vendored Normal file
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compilers:
- compiler:
environment: {}
extra_rpaths: []
flags: {}
modules: []
operating_system: rhel8
paths:
cc: /usr/bin/gcc
cxx: /usr/bin/g++
f77: /usr/bin/gfortran
fc: /usr/bin/gfortran
spec: gcc@8.5.0
target: x86_64

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env/rhel8/x86_64/sysconfigs/packages.yaml vendored Normal file
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---
packages:
all:
compiler: [gcc@8.5.0, oneapi, nvhpc]
prefer:
- spec: '^openmpi'
providers:
blas: [openblas, intel-oneapi-mkl, nvhpc]
lapack: [openblas, intel-oneapi-mkl, nvhpc]
mpi: [openmpi, mpich, intel-oneapi-mpi]
pkgconfig: [pkg-config]
require:
- spec: 'target=skylake_avx512'
when: "%nvhpc"
message: "nvhpc compilers cannot target generic x86_64 microarchitecture."
- spec: "os=rhel8"
target: [x86_64]
# Default GPU arch
variants:
- cuda_arch=60
autoconf:
require: '%gcc@8.5.0'
automake:
require: '%gcc@8.5.0'
berkeley-db:
require: '%gcc@8.5.0'
binutils:
require: '%gcc@8.5.0'
boost:
require: '%gcc'
bzip2:
require: '%gcc@8.5.0'
ca-certificates-mozilla:
require: '%gcc@8.5.0'
cairo:
require: '%gcc@8.5.0'
cmake:
require: '%gcc'
coreutils:
require: '%gcc@8.5.0'
cp2k:
require: 'build_system=makefile'
cpio:
require: '%gcc'
ctffind:
require: '%gcc'
# Makes sure the binary works on any sytem (incl. Gwendolen)
cuda:
require: '@12.2:'
curl:
require: '%gcc@8.5.0'
cvs:
require: '%gcc@8.5.0'
diffutils:
require: '%gcc@8.5.0'
doxygen:
require: '%gcc'
expat:
require: '%gcc@8.5.0'
file:
require: '%gcc@8.5.0'
findutils:
require: '%gcc@8.5.0'
flex:
require: '%gcc@8.5.0'
fltk:
require: '%gcc'
fontconfig:
require: '%gcc'
freetype:
require: '%gcc@8.5.0'
gams:
require: '%gcc@8.5.0'
gawk:
require: '%gcc@8.5.0'
gcc:
require: '%gcc@8.5.0'
gdbm:
require: '%gcc@8.5.0'
gettext:
buildable: false
externals:
- prefix: /usr
spec: gettext@0.19.8.1
ghostscript:
require: '%gcc@8.5.0'
git:
require: '%gcc@8.5.0'
glew:
require: '%gcc'
gmake:
require: '%gcc@8.5.0'
groff:
require: '%gcc@8.5.0'
harfbuzz:
require: '%gcc'
hcoll:
require: '%gcc@8.5.0'
icu4c:
require: '@67.1%gcc@12.3.0'
intel-oneapi-compilers:
require: '%gcc@8.5.0'
libbsd:
require: '%gcc@8.5.0'
libcroco:
require: '%gcc@8.5.0'
libepoxy:
require: '%gcc@8.5.0'
libevent:
require: '%gcc@8.5.0'
libfuse:
require: '%gcc@8.5.0'
libice:
require: '%gcc@8.5.0'
libiconv:
require: '%gcc@8.5.0'
libidn2:
require: '%gcc@8.5.0'
libjpeg-turbo:
require: '%gcc@8.5.0'
libmd:
require: '%gcc@8.5.0'
libpciaccess:
require: '%gcc@8.5.0'
libpthread:
require: '%gcc@8.5.0'
libpthread-stubs:
require: '%gcc@8.5.0'
libreadline:
require: '%gcc@8.5.0'
librsvg:
require: '%gcc'
libsigsegv:
require: '%gcc@8.5.0'
libtiff:
require: '%gcc'
libtool:
require: '%gcc@8.5.0'
libx11:
require: '%gcc@8.5.0'
libxcb:
require: '%gcc@8.5.0'
libxext:
require: '%gcc@8.5.0'
libxft:
require: '%gcc'
libxml2:
require: '%gcc@8.5.0'
libxpm:
require: '%gcc@8.5.0'
libxt:
require: '%gcc'
m4:
require: '%gcc@8.5.0'
ncurses:
require: '%gcc@8.5.0'
ninja:
require: '%gcc@8.5.0'
nlohmann-json:
require: '%gcc@8.5.0'
numactl:
require: '%gcc@8.5.0'
nvhpc:
require: '%gcc@8.5.0 install_type=network'
openblas:
require: '%gcc'
openmpi:
require:
- spec: schedulers=slurm fabrics=auto pmi-interface=pmix +cxx +cuda +legacylaunchers
- spec: '+cxx_exceptions'
when: '%gcc'
openssh:
require: '%gcc@8.5.0'
openssl:
require: '%gcc@8.5.0'
pcre2:
require: '%gcc@8.5.0'
perl:
require: '%gcc@8.5.0'
pkg-config:
require: '%gcc@8.5.0'
py-numpy:
require: '%gcc@12.3.0'
python:
require: '%gcc'
readline:
require: '%gcc@8.5.0'
rsync:
require: '%gcc@8.5.0'
ruby:
require: '%gcc@8.5.0'
sed:
require: '%gcc@8.5.0'
slurm:
buildable: false
externals:
- prefix: /usr
spec: slurm@24-05-2-1 +pmix +hwloc +hdf5 +mariadb +pam
sqlite:
require: '%gcc@8.5.0'
subversion:
require: '%gcc@8.5.0'
tar:
require: '%gcc@8.5.0'
texinfo:
require: '%gcc@8.5.0'
unuran:
require: '%gcc@8.5.0'
util-linux-uuid:
require: '%gcc@8.5.0'
util-macros:
require: '%gcc@8.5.0'
valgrind:
require: '%gcc@8.5.0'
xerces-c:
require: '%gcc@8.5.0'
xxhash:
require: '%gcc@8.5.0'
xz:
require: '%gcc@8.5.0'
zlib:
require: '%gcc@8.5.0'
zstd:
require: '%gcc@8.5.0'

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spack:
concretizer:
unify: false
include:
- $spack/../spack-psi/env/rhel8/x86_64/sysconfigs/packages.yaml
- $spack/../spack-psi/env/rhel8/x86_64/sysconfigs/compilers.yaml
include_concrete:
- /afs/psi.ch/sys/spack/spack-psi/env/rhel8/x86_64/admin/stable
specs: []
upstreams:
stable:
install_tree: >-
$spack/opt/spack/stable
view: false

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spack:
concretizer:
unify: false
include:
- $spack/../spack-psi/env/rhel8/x86_64/sysconfigs/packages.yaml
- $spack/../spack-psi/env/rhel8/x86_64/sysconfigs/compilers.yaml
include_concrete:
- /afs/psi.ch/sys/spack/spack-psi/env/rhel8/x86_64/admin/stable
- /afs/psi.ch/sys/spack/spack-psi/env/rhel8/x86_64/admin/unstable
specs: []
upstreams:
stable:
install_tree: $spack/opt/spack/stable
unstable:
install_tree: $spack/opt/spack/unstable
view: false