ADD: views

env/merlin/spack.yaml

@@ -1,8 +1,15 @@
 spack:
+  concretizer:
+    unify: false
+  config:
+    build_stage:
+      - /scratch/spack-rhel7
+    install_tree:
+      root: /scratch/spack-rhel7/spack-install
   definitions:
     - compilers:
         - '%gcc@12.1.0'
-  - compiler_pckg:
+    - compiler_pckg: &compiler_pckg
         - atlas
         - boost
         - clapack
@@ -13,6 +20,7 @@ spack:
         - gsl
         - googletest
         - hdf5~mpi
+        - hdf5+mpi
         - kokkos
         - libint tune=cp2k-lmax-6
         - libxc
@@ -25,13 +33,15 @@ spack:
         - root
         - superlu
         - vtk
-  - EM_pckg:
+    - cuda_pckg: &cuda_pckg
+        - cuda
+    - EM_pckg: &EM_pckg
         - cistem
         - ctffind
         - motioncor2
         - relion
         - unblur
-  - librairies_pckg:
+    - librairies_pckg: &librairies_pckg
         - alsa-lib
         - gdrcopy
         - giflib
@@ -49,18 +59,40 @@ spack:
         - wxwidgets
         - x264
         - zlib
-  - MX_pckg:
+    - MX_pckg: &MX_pckg
         - cbflib
         - lz4
         - openbabel
         - visit
-  - programming_pckg:
+    - HDF5_pckg: &HDF5_pckg
+        - alps
+        - h5hut+mpi
+        - hdf5-blosc
+        - ioapi
+        - netcdf-c
+        - netcdf-fortran
+        - netcdf-c +parallel-netcdf
+        - trilinos
+    - HDF5_serial_pckg: &HDF5_serial_pckg
+        - h5hut~mpi
+        - ncview
+    - MPI_pckg: &MPI_pckg
+        - amrex
+        - boxlib
+        - cp2k
+        - cpmd
+        - elegant
+        - elpa
+        - fftw
+        - gromacs
+        - lammps
+        - astra
+    - programming_pckg: &programming_pckg
         - autoconf
         - automake
         - binutils
         - bison
         - cmake
-    - cuda
         - erlang
         - gcc
         - go
@@ -71,8 +103,6 @@ spack:
         - libtool
         - lua
         - m4
- #   - mathematica source needs to be provided
- #   - matlab source needs to be provided
         - nasm
         - perl
         - nvhpc
@@ -82,22 +112,20 @@ spack:
         - r
         - tcl
         - tk
-  - system_pckg:
+    - system_pckg: &system_pckg
         - bash
         - filebench
         - ior
         - mdtest
-#   - mxm not installable
         - nmap
         - patchelf
         - unison
-  - tools_pckg:
+    - tools_pckg: &tools_pckg
         - aria2
         - asciidoc
         - coreutils
         - emacs
         - ffmpeg
-#   - gams source needs to be provided
         - gaussian
         - gettext
         - git
@@ -121,30 +149,81 @@ spack:
         - visit
         - xmlto
         - xz
-  concretizer:
-    unify: false
-  view: true
   include:
-  - sysconfigs/config.yaml
     - sysconfigs/compilers.yaml
     - sysconfigs/packages.yaml
     - sysconfigs/modules.yaml
   specs:
     - matrix:
-      - [ $compiler_pckg ]
+        - - $compiler_pckg
-      - [ $compilers ]
+        - - $compilers
-    - matrix:
+  view:
-      - [ $EM_pckg ]
+    Compilers:
-      - [ $compilers ]
+      link: roots
-    - matrix:
+      link_type: symlink
-      - [ $MX_pckg ]
+      projections: &unified_projections
-      - [ $compilers ]
+        ^mpi: '{name}/{version}/{^mpi.name}/{^mpi.version}/{compiler.name}/{compiler.version}'
-    - matrix:
+        all: '{name}/{version}/{compiler.name}/{compiler.version}'
-      - [ $programming_pckg ]
+        ~mpi: '{name}_serial/{version}/{compiler.name}/{compiler.version}'
-      - [ $compilers ]
+      root: /afs/psi.ch/sys/spack-rhel7/Compilers
-    - matrix:
+      select: *compiler_pckg
-      - [ $system_pckg ]
+    cuda:
-      - [ $compilers ]
+      link: roots
-    - matrix:
+      link_type: symlink
-      - [ $tools_pckg ]
+      projections: *unified_projections
-      - [ $compilers ]
+      root: /afs/psi.ch/sys/spack-rhel7/cuda
+      select: *cuda_pckg
+    EM:
+      link: roots
+      link_type: symlink
+      projections: *unified_projections
+      root: /afs/psi.ch/sys/spack-rhel7/EM
+      select: *EM_pckg
+    HDF5:
+      link: roots
+      link_type: symlink
+      projections: *unified_projections
+      root: /afs/psi.ch/sys/spack-rhel7/HDF5
+      select: *HDF5_pckg
+    HDF5_serial:
+      link: roots
+      link_type: symlink
+      projections: *unified_projections
+      root: /afs/psi.ch/sys/spack-rhel7/HDF5_serial
+      select: *HDF5_serial_pckg
+    Librairies:
+      link: roots
+      link_type: symlink
+      projections: *unified_projections
+      root: /afs/psi.ch/sys/spack-rhel7/Librairies
+      select: *librairies_pckg
+    MK:
+      link: roots
+      link_type: symlink
+      projections: *unified_projections
+      root: /afs/psi.ch/sys/spack-rhel7/MK
+      select: *MX_pckg
+    MPI:
+      link: roots
+      link_type: symlink
+      projections: *unified_projections
+      root: /afs/psi.ch/sys/spack-rhel7/MPI
+      select: *MPI_pckg
+    Programming:
+      link: roots
+      link_type: symlink
+      projections: *unified_projections
+      root: /afs/psi.ch/sys/spack-rhel7/Programming
+      select: *programming_pckg
+    System:
+      link: roots
+      link_type: symlink
+      projections: *unified_projections
+      root: /afs/psi.ch/sys/spack-rhel7/System
+      select: *system_pckg
+    Tools:
+      link: roots
+      link_type: symlink
+      projections: *unified_projections
+      root: /afs/psi.ch/sys/spack-rhel7/Tools
+      select: *tools_pckg