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FIX: applying formatting

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This commit is contained in:
Germann Elsa Sylvia
2022-08-12 13:44:00 +02:00
parent 6891106a73
commit 34048e11c9
3 changed files with 246 additions and 268 deletions
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183
env/merlin/sysconfigs/compilers.yaml vendored
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@ -1,92 +1,93 @@
---
compilers: compilers:
- compiler: - compiler:
spec: gcc@4.8.5 environment: {}
paths: extra_rpaths: []
cc: /usr/bin/gcc flags: {}
cxx: /usr/bin/g++ modules: []
f77: /usr/bin/gfortran operating_system: rhel7
fc: /usr/bin/gfortran paths:
flags: {} cc: /usr/bin/gcc
operating_system: rhel7 cxx: /usr/bin/g++
target: x86_64 f77: /usr/bin/gfortran
modules: [] fc: /usr/bin/gfortran
environment: {} spec: gcc@4.8.5
extra_rpaths: [] target: x86_64
- compiler: - compiler:
spec: dpcpp@2022.1.0 environment: {}
paths: extra_rpaths: []
cc: /opt/psi/Programming/intel/22.2/compiler/2022.1.0/linux/bin/icx flags: {}
cxx: /opt/psi/Programming/intel/22.2/compiler/2022.1.0/linux/bin/dpcpp modules: []
f77: /opt/psi/Programming/intel/22.2/compiler/2022.1.0/linux/bin/ifx operating_system: rhel7
fc: /opt/psi/Programming/intel/22.2/compiler/2022.1.0/linux/bin/ifx paths:
flags: {} cc: /opt/psi/Programming/intel/22.2/compiler/2022.1.0/linux/bin/icx
operating_system: rhel7 cxx: /opt/psi/Programming/intel/22.2/compiler/2022.1.0/linux/bin/dpcpp
target: x86_64 f77: /opt/psi/Programming/intel/22.2/compiler/2022.1.0/linux/bin/ifx
modules: [] fc: /opt/psi/Programming/intel/22.2/compiler/2022.1.0/linux/bin/ifx
environment: {} spec: dpcpp@2022.1.0
extra_rpaths: [] target: x86_64
- compiler: - compiler:
spec: gcc@9.3.0 environment: {}
paths: extra_rpaths: []
cc: /opt/psi/Programming/gcc/9.3.0/bin/gcc flags: {}
cxx: /opt/psi/Programming/gcc/9.3.0/bin/g++ modules: []
f77: /opt/psi/Programming/gcc/9.3.0/bin/gfortran operating_system: rhel7
fc: /opt/psi/Programming/gcc/9.3.0/bin/gfortran paths:
flags: {} cc: /opt/psi/Programming/gcc/9.3.0/bin/gcc
operating_system: rhel7 cxx: /opt/psi/Programming/gcc/9.3.0/bin/g++
target: x86_64 f77: /opt/psi/Programming/gcc/9.3.0/bin/gfortran
modules: [] fc: /opt/psi/Programming/gcc/9.3.0/bin/gfortran
environment: {} spec: gcc@9.3.0
extra_rpaths: [] target: x86_64
- compiler: - compiler:
spec: intel@2021.6.0 environment: {}
paths: extra_rpaths: []
cc: /opt/psi/Programming/intel/22.2/compiler/2022.1.0/linux/bin/intel64/icc flags: {}
cxx: /opt/psi/Programming/intel/22.2/compiler/2022.1.0/linux/bin/intel64/icpc modules: []
f77: /opt/psi/Programming/intel/22.2/compiler/2022.1.0/linux/bin/intel64/ifort operating_system: rhel7
fc: /opt/psi/Programming/intel/22.2/compiler/2022.1.0/linux/bin/intel64/ifort paths:
flags: {} cc: /opt/psi/Programming/intel/22.2/compiler/2022.1.0/linux/bin/intel64/icc
operating_system: rhel7 cxx: /opt/psi/Programming/intel/22.2/compiler/2022.1.0/linux/bin/intel64/icpc
target: x86_64 f77: /opt/psi/Programming/intel/22.2/compiler/2022.1.0/linux/bin/intel64/ifort
modules: [] fc: /opt/psi/Programming/intel/22.2/compiler/2022.1.0/linux/bin/intel64/ifort
environment: {} spec: intel@2021.6.0
extra_rpaths: [] target: x86_64
- compiler: - compiler:
spec: oneapi@2022.1.0 environment: {}
paths: extra_rpaths: []
cc: /opt/psi/Programming/intel/22.2/compiler/2022.1.0/linux/bin/icx flags: {}
cxx: /opt/psi/Programming/intel/22.2/compiler/2022.1.0/linux/bin/icpx modules: []
f77: /opt/psi/Programming/intel/22.2/compiler/2022.1.0/linux/bin/ifx operating_system: rhel7
fc: /opt/psi/Programming/intel/22.2/compiler/2022.1.0/linux/bin/ifx paths:
flags: {} cc: /opt/psi/Programming/intel/22.2/compiler/2022.1.0/linux/bin/icx
operating_system: rhel7 cxx: /opt/psi/Programming/intel/22.2/compiler/2022.1.0/linux/bin/icpx
target: x86_64 f77: /opt/psi/Programming/intel/22.2/compiler/2022.1.0/linux/bin/ifx
modules: [] fc: /opt/psi/Programming/intel/22.2/compiler/2022.1.0/linux/bin/ifx
environment: {} spec: oneapi@2022.1.0
extra_rpaths: [] target: x86_64
- compiler: - compiler:
spec: gcc@9.5.0 environment: {}
paths: extra_rpaths: []
cc: /opt/psi/Programming/gcc/9.5.0/bin/gcc flags: {}
cxx: /opt/psi/Programming/gcc/9.5.0/bin/g++ modules: []
f77: /opt/psi/Programming/gcc/9.5.0/bin/gfortran operating_system: rhel7
fc: /opt/psi/Programming/gcc/9.5.0/bin/gfortran paths:
flags: {} cc: /opt/psi/Programming/gcc/9.5.0/bin/gcc
operating_system: rhel7 cxx: /opt/psi/Programming/gcc/9.5.0/bin/g++
target: x86_64 f77: /opt/psi/Programming/gcc/9.5.0/bin/gfortran
modules: [] fc: /opt/psi/Programming/gcc/9.5.0/bin/gfortran
environment: {} spec: gcc@9.5.0
extra_rpaths: [] target: x86_64
- compiler: - compiler:
spec: nvhpc@21.5 environment: {}
paths: extra_rpaths: []
cc: /opt/psi/Programming/pgi/21.5/Linux_x86_64/21.5/compilers/bin/nvc flags: {}
cxx: /opt/psi/Programming/pgi/21.5/Linux_x86_64/21.5/compilers/bin/nvc++ modules: []
f77: /opt/psi/Programming/pgi/21.5/Linux_x86_64/21.5/compilers/bin/nvfortran operating_system: rhel7
fc: /opt/psi/Programming/pgi/21.5/Linux_x86_64/21.5/compilers/bin/nvfortran paths:
flags: {} cc: /opt/psi/Programming/pgi/21.5/Linux_x86_64/21.5/compilers/bin/nvc
operating_system: rhel7 cxx: /opt/psi/Programming/pgi/21.5/Linux_x86_64/21.5/compilers/bin/nvc++
target: x86_64 f77: /opt/psi/Programming/pgi/21.5/Linux_x86_64/21.5/compilers/bin/nvfortran
modules: [] fc: /opt/psi/Programming/pgi/21.5/Linux_x86_64/21.5/compilers/bin/nvfortran
environment: {} spec: nvhpc@21.5
extra_rpaths: [] target: x86_64

5
env/merlin/sysconfigs/config.yaml vendored
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@ -1,6 +1,7 @@
---
config: config:
install_tree: install_tree:
root: /afs/psi.ch/sys/spack-rhel7
projections: projections:
^mpi: '{name}/{version}/{^mpi.name}/{^mpi.version}/{compiler.name}/{compiler.version}'
all: '{name}/{version}/{compiler.name}/{compiler.version}' all: '{name}/{version}/{compiler.name}/{compiler.version}'
^mpi: '{name}/{version}/{^mpi.name}/{^mpi.version}/{compiler.name}/{compiler.version}' root: /afs/psi.ch/sys/spack-rhel7

326
env/merlin/sysconfigs/packages.yaml vendored
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@ -1,294 +1,270 @@
---
packages: packages:
all: all:
compiler: compiler:
- gcc@9.5.0 - gcc@9.5.0
- gcc@9.3.0 - gcc@9.3.0
- intel@2021.6.0 - intel@2021.6.0
- oneapi@2022.1.0 - oneapi@2022.1.0
- dpcpp@2022.1.0 - dpcpp@2022.1.0
- nvhpc@21.5 - nvhpc@21.5
permissions:
read: user
write: user
providers: providers:
blas: blas:
- intel-mkl - intel-mkl
mkl: mkl:
- intel-mkl - intel-mkl
mpi: [openmpi, intel-oneapi-mpi, mpich] mpi:
- openmpi
- intel-oneapi-mpi
- mpich
pkgconfig: pkgconfig:
- pkg-config - pkg-config
scalapack: scalapack:
- intel-mkl - intel-mkl
target: target:
- haswell - haswell
permissions:
write: user
read: user
autoconf: autoconf:
buildable: false
externals: externals:
- spec: autoconf@2.69 - prefix: /usr
prefix: /usr spec: autoconf@2.69
automake: automake:
buildable: false
externals: externals:
- spec: automake@1.13.4 - prefix: /usr
prefix: /usr spec: automake@1.13.4
bash: bash:
buildable: false
externals: externals:
- prefix: /opt/psi/System/bash/5.1.16 - prefix: /opt/psi/System/bash/5.1.16
spec: bash@5.1.16 spec: bash@5.1.16
binutils: binutils:
buildable: false
externals: externals:
- spec: binutils@2.27.44 - prefix: /usr
prefix: /usr spec: binutils@2.27.44
bison: bison:
externals: externals:
- prefix: /opt/psi/Programming/bison/3.8.2 - prefix: /opt/psi/Programming/bison/3.8.2
spec: bison@3.8.2 spec: bison@3.8.2
bzip2: bzip2:
buildable: false
externals: externals:
- prefix: /usr - prefix: /usr
spec: bzip2@1.0.6 spec: bzip2@1.0.6
cmake: cmake:
externals: externals:
- spec: cmake@3.23.2 - prefix: /opt/psi/Programming/cmake/3.23.2
prefix: /opt/psi/Programming/cmake/3.23.2 spec: cmake@3.23.2
cpio: cpio:
buildable: false
externals: externals:
- prefix: /usr - prefix: /usr
spec: cpio@2.11 spec: cpio@2.11
cvs:
externals:
- spec: cvs@1.11.23
prefix: /usr
cuda: cuda:
externals: externals:
- spec: cuda@11.5.1%gcc - prefix: /opt/psi/Programming/cuda/11.5.1
prefix: /opt/psi/Programming/cuda/11.5.1 spec: cuda@11.5.1%gcc
- spec: cuda@11.0.3%gcc@9.3.0 - prefix: /opt/psi/Compiler/cuda/11.0.3/gcc/9.3.0
prefix: /opt/psi/Compiler/cuda/11.0.3/gcc/9.3.0 spec: cuda@11.0.3%gcc@9.3.0
curl: curl:
buildable: false
externals: externals:
- prefix: /usr - prefix: /usr
spec: curl@7.29.0 spec: curl@7.29.0
cvs:
externals:
- prefix: /usr
spec: cvs@1.11.23
diffutils: diffutils:
externals: externals:
- spec: diffutils@3.3 - prefix: /usr
prefix: /usr spec: diffutils@3.3
doxygen: doxygen:
buildable: false
externals: externals:
- prefix: /usr - prefix: /usr
spec: doxygen@1.8.5 spec: doxygen@1.8.5
file: file:
buildable: false
externals: externals:
- prefix: /usr - prefix: /usr
spec: file@5.11 spec: file@5.11
findutils: findutils:
externals: externals:
- spec: findutils@4.5.11 - prefix: /usr
prefix: /usr spec: findutils@4.5.11
flex: flex:
externals: externals:
- spec: flex@2.5.37+lex - prefix: /usr
prefix: /usr spec: flex@2.5.37+lex
gawk: gawk:
externals: externals:
- spec: gawk@4.0.2 - prefix: /usr
prefix: /usr spec: gawk@4.0.2
ghostscript: ghostscript:
buildable: false
externals: externals:
- prefix: /usr - prefix: /usr
spec: ghostscript@9.25 spec: ghostscript@9.25
git: git:
externals: externals:
- spec: git@1.8.3.1~tcltk - prefix: /usr
prefix: /usr spec: git@1.8.3.1~tcltk
gmake: gmake:
externals: externals:
- spec: gmake@3.82 - prefix: /usr
prefix: /usr spec: gmake@3.82
gmp: gmp:
externals: externals:
- spec: gmp@6.2.1 - prefix: /opt/psi/Libraries/gmp/6.2.1
prefix: /opt/psi/Libraries/gmp/6.2.1 spec: gmp@6.2.1
groff: groff:
externals: externals:
- spec: groff@1.22.2 - prefix: /usr
prefix: /usr spec: groff@1.22.2
hdf5: hdf5:
externals: externals:
- spec: hdf5@1.8.21%gcc@8.2.0 ~mpi +hl +fortran +shared - prefix: /opt/psi/Compiler/hdf5_serial/1.8.21/gcc/8.2.0
prefix: /opt/psi/Compiler/hdf5_serial/1.8.21/gcc/8.2.0 spec: hdf5@1.8.21%gcc@8.2.0 ~mpi +hl +fortran +shared
- spec: hdf5@1.8.21%intel@18.4 ~mpi +hl +fortran +shared - prefix: /opt/psi/Compiler/hdf5_serial/1.8.21/intel/18.4
prefix: /opt/psi/Compiler/hdf5_serial/1.8.21/intel/18.4 spec: hdf5@1.8.21%intel@18.4 ~mpi +hl +fortran +shared
- spec: hdf5@1.8.21%nvhpc@18.5 ~mpi +hl +fortran +shared - prefix: /opt/psi/Compiler/hdf5_serial/1.8.21/pgi/18.5
prefix: /opt/psi/Compiler/hdf5_serial/1.8.21/pgi/18.5 spec: hdf5@1.8.21%nvhpc@18.5 ~mpi +hl +fortran +shared
- spec: hdf5@1.8.20%gcc@7.3.0 +mpi +hl +fortran +shared - prefix: /opt/psi/MPI/hdf5/1.8.20/openmpi/3.1.3/gcc/7.3.0/lib
prefix: /opt/psi/MPI/hdf5/1.8.20/openmpi/3.1.3/gcc/7.3.0/lib spec: hdf5@1.8.20%gcc@7.3.0 +mpi +hl +fortran +shared
- spec: hdf5@1.8.20%intel@18.4 +mpi +hl +fortran +shared - prefix: /opt/psi/MPI/hdf5/1.8.20/impi/18.4/intel/18.4
prefix: /opt/psi/MPI/hdf5/1.8.20/impi/18.4/intel/18.4 spec: hdf5@1.8.20%intel@18.4 +mpi +hl +fortran +shared
hwloc: hwloc:
externals: externals:
- spec: hwloc@2.7.1 - prefix: /opt/psi/Libraries/hwloc/2.7.1
prefix: /opt/psi/Libraries/hwloc/2.7.1 spec: hwloc@2.7.1
intel-oneapi-mpi: intel-oneapi-mpi:
externals: externals:
- spec: intel-oneapi-mpi@2021.6.0%intel@2021.6.0 - prefix: /opt/psi/Programming/intel/22.2
prefix: /opt/psi/Programming/intel/22.2 spec: intel-oneapi-mpi@2021.6.0%intel@2021.6.0
julia: julia:
externals: externals:
- spec: julia@1.7.3 - prefix: /opt/psi/Programming/Julia/1.7.3
prefix: /opt/psi/Programming/Julia/1.7.3 spec: julia@1.7.3
krb5: krb5:
externals: externals:
- spec: krb5@1.20 - prefix: /opt/psi/Tools/krb5/1.20
prefix: /opt/psi/Tools/krb5/1.20 spec: krb5@1.20
libevent:
externals:
- prefix: /opt/psi/Libraries/libevent/2.1.8
spec: libevent@2.1.8
libfuse: libfuse:
buildable: false
externals: externals:
- prefix: /usr - prefix: /usr
spec: libfuse@3.6.1 spec: libfuse@3.6.1
libtool: libtool:
externals: externals:
- spec: libtool@2.4.2 - prefix: /usr
prefix: /usr spec: libtool@2.4.2
libxml2: libxml2:
buildable: true
externals: externals:
- spec: libxml2@2.9.1%gcc - prefix: /usr
prefix: /usr spec: libxml2@2.9.1%gcc
lua: lua:
externals: externals:
- spec: lua@5.1.4.5 - prefix: /opt/psi/Programming/lua/5.1.4.5
prefix: /opt/psi/Programming/lua/5.1.4.5 spec: lua@5.1.4.5
m4: m4:
externals: externals:
- spec: m4@1.4.16 - prefix: /usr
prefix: /usr spec: m4@1.4.16
mpich: mpich:
buildable: false
externals: externals:
- spec: mpich@3.4.3%gcc@11.2.0 - prefix: /opt/psi/Compiler/mpich/3.4.3_merlin/gcc/11.2.0
prefix: /opt/psi/Compiler/mpich/3.4.3_merlin/gcc/11.2.0 spec: mpich@3.4.3%gcc@11.2.0
nasm: nasm:
externals: externals:
- spec: nasm@2.15.05 - prefix: /opt/psi/Programming/nasm/2.15.05
prefix: /opt/psi/Programming/nasm/2.15.05 spec: nasm@2.15.05
netcdf-c: netcdf-c:
buildable: false
externals: externals:
- spec: netcdf-c@4.8.1%gcc@11.2.0+parallel-netcdf+mpi - prefix: /opt/psi/HDF5/netcdf/4.8.1/hdf5/1.13.1_slurm/openmpi/4.1.3_slurm/gcc/11.2.0
prefix: /opt/psi/HDF5/netcdf/4.8.1/hdf5/1.13.1_slurm/openmpi/4.1.3_slurm/gcc/11.2.0 spec: netcdf-c@4.8.1%gcc@11.2.0+parallel-netcdf+mpi
- spec: netcdf-c@4.6.1%gcc@7.3.0~parallel-netcdf~mpi - prefix: /opt/psi/HDF5_serial/netcdf/4.6.1/hdf5_serial/1.10.3/gcc/7.3.0
prefix: /opt/psi/HDF5_serial/netcdf/4.6.1/hdf5_serial/1.10.3/gcc/7.3.0 spec: netcdf-c@4.6.1%gcc@7.3.0~parallel-netcdf~mpi
netcdf-fortran: netcdf-fortran:
buildable: false
externals: externals:
- spec: netcdf-fortran@4.8.1%gcc@11.2.0 - prefix: /opt/psi/HDF5/netcdf/4.8.1/hdf5/1.13.1_slurm/openmpi/4.1.3_slurm/gcc/11.2.0
prefix: /opt/psi/HDF5/netcdf/4.8.1/hdf5/1.13.1_slurm/openmpi/4.1.3_slurm/gcc/11.2.0 spec: netcdf-fortran@4.8.1%gcc@11.2.0
- spec: netcdf-fortran@4.6.1%gcc@7.3.0 - prefix: /opt/psi/HDF5_serial/netcdf/4.6.1/hdf5_serial/1.10.3/gcc/7.3.0
prefix: /opt/psi/HDF5_serial/netcdf/4.6.1/hdf5_serial/1.10.3/gcc/7.3.0 spec: netcdf-fortran@4.6.1%gcc@7.3.0
openjdk: openjdk:
externals: externals:
- spec: openjdk@11.0.15_10 - prefix: /opt/psi/Programming/Java/15u36/bin
prefix: /opt/psi/Programming/Java/15u36/bin spec: openjdk@11.0.15_10
openmpi: openmpi:
buildable: false
externals: externals:
- spec: openmpi@4.1.3%gcc@11.2.0 - prefix: /opt/psi/Compiler/openmpi/4.1.3_slurm/gcc/11.2.0
prefix: /opt/psi/Compiler/openmpi/4.1.3_slurm/gcc/11.2.0 spec: openmpi@4.1.3%gcc@11.2.0
- spec: openmpi@4.1.3%intel@20.4 - prefix: /opt/psi/Compiler/openmpi/4.1.3_slurm/intel/20.4
prefix: /opt/psi/Compiler/openmpi/4.1.3_slurm/intel/20.4 spec: openmpi@4.1.3%intel@20.4
openssh: openssh:
externals: externals:
- spec: openssh@7.4p1 - prefix: /usr
prefix: /usr spec: openssh@7.4p1
openssl: openssl:
externals: externals:
- spec: openssl@1.1.1n - prefix: /opt/psi/Programming/intel/22.2/intelpython/python3.9
prefix: /opt/psi/Programming/intel/22.2/intelpython/python3.9 spec: openssl@1.1.1n
- spec: openssl@1.0.2k-fips - prefix: /usr
prefix: /usr spec: openssl@1.0.2k-fips
perl: perl:
externals: externals:
- prefix: /opt/psi/Programming/perl/5.30.0 - prefix: /opt/psi/Programming/perl/5.30.0
spec: perl@5.30.0+cpanm+threads spec: perl@5.30.0+cpanm+threads
pkg-config: pkg-config:
externals: externals:
- spec: pkg-config@0.27.1 - prefix: /usr
prefix: /usr spec: pkg-config@0.27.1
pmix:
externals:
- spec: pmix@3.2.3
prefix: /opt/psi/Libraries/pmix/3.2.3
python: python:
externals: externals:
- spec: python@2.7.5 - prefix: /usr
prefix: /usr spec: python@2.7.5
r: r:
externals: externals:
- spec: r@4.1.1.0 - prefix: /opt/psi/Programming/R/3.2.5
prefix: /opt/psi/Programming/R/3.2.5 spec: r@4.1.1.0
rsync: rsync:
externals: externals:
- spec: rsync@3.1.2 - prefix: /usr
prefix: /usr spec: rsync@3.1.2
ruby: ruby:
buildable: false
externals: externals:
- spec: ruby@2.0.0p648 - prefix: /usr
prefix: /usr spec: ruby@2.0.0p648
sed: sed:
externals: externals:
- spec: sed@4.2.2 - prefix: /usr
prefix: /usr spec: sed@4.2.2
slurm: slurm:
externals: externals:
- spec: slurm@21.08.6 - prefix: /opt/psi/Batchsystem/slurm/21.08.6
prefix: /opt/psi/Batchsystem/slurm/21.08.6 spec: slurm@21.08.6
subversion: subversion:
externals: externals:
- spec: subversion@1.7.14 - prefix: /usr
prefix: /usr spec: subversion@1.7.14
tar: tar:
externals: externals:
- spec: tar@1.26 - prefix: /usr
prefix: /usr spec: tar@1.26
tcl: tcl:
externals: externals:
- spec: tcl@8.6.9 - prefix: /opt/psi/Programming/Tcl/8.6.9
prefix: /opt/psi/Programming/Tcl/8.6.9 spec: tcl@8.6.9
texinfo: texinfo:
externals: externals:
- spec: texinfo@5.1 - prefix: /usr
prefix: /usr spec: texinfo@5.1
texlive: texlive:
externals: externals:
- spec: texlive@20170524 - prefix: /opt/psi/Tools/texlive/2017
prefix: /opt/psi/Tools/texlive/2017 spec: texlive@20170524
ucx: ucx:
externals: externals:
- spec: ucx@1.9.0 - prefix: /opt/psi/Libraries/ucx/1.9.0
prefix: /opt/psi/Libraries/ucx/1.9.0 spec: ucx@1.9.0
xz: xz:
externals: externals:
- spec: xz@5.2.2 - prefix: /usr
prefix: /usr spec: xz@5.2.2
zlib: zlib:
externals: externals:
- spec: zlib@1.2.7 - prefix: /usr
prefix: /usr spec: zlib@1.2.7