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FIX: only put /usr packages in packages.yaml and unbuilable pckgs

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This commit is contained in:
Germann Elsa Sylvia
2022-08-19 16:58:36 +02:00
parent ec7dd3926e
commit 325a2aef0e
1 changed files with 11 additions and 123 deletions
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134
env/merlin/sysconfigs/packages.yaml vendored
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@ -2,12 +2,7 @@
packages: packages:
all: all:
compiler: compiler:
- gcc@9.5.0 - gcc@12.1.0
- gcc@9.3.0
- intel@2021.6.0
- oneapi@2022.1.0
- dpcpp@2022.1.0
- nvhpc@21.5
permissions: permissions:
read: user read: user
write: user write: user
@ -36,39 +31,21 @@ packages:
externals: externals:
- prefix: /usr - prefix: /usr
spec: automake@1.13.4 spec: automake@1.13.4
bash:
externals:
- prefix: /opt/psi/System/bash/5.1.16
spec: bash@5.1.16
binutils: binutils:
buildable: false buildable: false
externals: externals:
- prefix: /usr - prefix: /usr
spec: binutils@2.27.44 spec: binutils@2.27.44
bison:
externals:
- prefix: /opt/psi/Programming/bison/3.8.2
spec: bison@3.8.2
bzip2: bzip2:
buildable: false buildable: false
externals: externals:
- prefix: /usr - prefix: /usr
spec: bzip2@1.0.6 spec: bzip2@1.0.6
cmake:
externals:
- prefix: /opt/psi/Programming/cmake/3.23.2
spec: cmake@3.23.2
cpio: cpio:
buildable: false buildable: false
externals: externals:
- prefix: /usr - prefix: /usr
spec: cpio@2.11 spec: cpio@2.11
cuda:
externals:
- prefix: /opt/psi/Programming/cuda/11.5.1
spec: cuda@11.5.1%gcc
- prefix: /opt/psi/Compiler/cuda/11.0.3/gcc/9.3.0
spec: cuda@11.0.3%gcc@9.3.0
curl: curl:
buildable: false buildable: false
externals: externals:
@ -108,15 +85,16 @@ packages:
externals: externals:
- prefix: /usr - prefix: /usr
spec: flex@2.5.37+lex spec: flex@2.5.37+lex
# E.G: only available from already downloaded source, so I put it here
gams:
externals:
- prefix: /opt/psi/Tools/GAMS/31.1.1/gams31.1_linux_x64_64_sfx
spec: gams@31.1.1
gawk: gawk:
buildable: false buildable: false
externals: externals:
- prefix: /usr - prefix: /usr
spec: gawk@4.0.2 spec: gawk@4.0.2
gcc:
externals:
- prefix: /opt/psi/Programming/gcc/9.5.0
spec: gcc@9.5.0
ghostscript: ghostscript:
buildable: false buildable: false
externals: externals:
@ -142,48 +120,16 @@ packages:
externals: externals:
- prefix: /usr - prefix: /usr
spec: gmake@3.82 spec: gmake@3.82
gmp:
externals:
- prefix: /opt/psi/Libraries/gmp/6.2.1
spec: gmp@6.2.1
groff: groff:
buildable: false buildable: false
externals: externals:
- prefix: /usr - prefix: /usr
spec: groff@1.22.2 spec: groff@1.22.2
hdf5:
externals:
- prefix: /opt/psi/Compiler/hdf5_serial/1.8.21/gcc/8.2.0
spec: hdf5@1.8.21%gcc@8.2.0 ~mpi +hl +fortran +shared
- prefix: /opt/psi/Compiler/hdf5_serial/1.8.21/intel/18.4
spec: hdf5@1.8.21%intel@18.4 ~mpi +hl +fortran +shared
- prefix: /opt/psi/Compiler/hdf5_serial/1.8.21/pgi/18.5
spec: hdf5@1.8.21%nvhpc@18.5 ~mpi +hl +fortran +shared
- prefix: /opt/psi/MPI/hdf5/1.8.20/openmpi/3.1.3/gcc/7.3.0/lib
spec: hdf5@1.8.20%gcc@7.3.0 +mpi +hl +fortran +shared
- prefix: /opt/psi/MPI/hdf5/1.8.20/impi/18.4/intel/18.4
spec: hdf5@1.8.20%intel@18.4 +mpi +hl +fortran +shared
hwloc:
externals:
- prefix: /opt/psi/Libraries/hwloc/2.7.1
spec: hwloc@2.7.1
intel-oneapi-mpi:
externals:
- prefix: /opt/psi/Programming/intel/22.2
spec: intel-oneapi-mpi@2021.6.0%intel@2021.6.0
jsoncpp: jsoncpp:
buildable: false buildable: false
externals: externals:
- prefix: /usr - prefix: /usr
spec: jsoncpp@1.9.4 spec: jsoncpp@1.9.4
julia:
externals:
- prefix: /opt/psi/Programming/Julia/1.7.3
spec: julia@1.7.3
krb5:
externals:
- prefix: /opt/psi/Tools/krb5/1.20
spec: krb5@1.20
libedit: libedit:
buildable: false buildable: false
externals: externals:
@ -284,10 +230,6 @@ packages:
externals: externals:
- prefix: /usr - prefix: /usr
spec: libxt@6.0.0 spec: libxt@6.0.0
lua:
externals:
- prefix: /opt/psi/Programming/lua/5.1.4.5
spec: lua@5.1.4.5
lz4: lz4:
buildable: false buildable: false
externals: externals:
@ -298,31 +240,17 @@ packages:
externals: externals:
- prefix: /usr - prefix: /usr
spec: m4@1.4.16 spec: m4@1.4.16
mpich: # E.G: only available from already downloaded source, so I put it here
mxm:
buildable: false
externals: externals:
- prefix: /opt/psi/Compiler/mpich/3.4.3_merlin/gcc/11.2.0 - prefix: /opt/psi/System/mxm/3.6.3104
spec: mpich@3.4.3%gcc@11.2.0 spec: mxm@3.6.3104
nasm:
externals:
- prefix: /opt/psi/Programming/nasm/2.15.05
spec: nasm@2.15.05
ncurses: ncurses:
buildable: false buildable: false
externals: externals:
- prefix: /usr - prefix: /usr
spec: ncurses@5.9.20130511 spec: ncurses@5.9.20130511
netcdf-c:
externals:
- prefix: /opt/psi/HDF5/netcdf/4.8.1/hdf5/1.13.1_slurm/openmpi/4.1.3_slurm/gcc/11.2.0
spec: netcdf-c@4.8.1%gcc@11.2.0+parallel-netcdf+mpi
- prefix: /opt/psi/HDF5_serial/netcdf/4.6.1/hdf5_serial/1.10.3/gcc/7.3.0
spec: netcdf-c@4.6.1%gcc@7.3.0~parallel-netcdf~mpi
netcdf-fortran:
externals:
- prefix: /opt/psi/HDF5/netcdf/4.8.1/hdf5/1.13.1_slurm/openmpi/4.1.3_slurm/gcc/11.2.0
spec: netcdf-fortran@4.8.1%gcc@11.2.0
- prefix: /opt/psi/HDF5_serial/netcdf/4.6.1/hdf5_serial/1.10.3/gcc/7.3.0
spec: netcdf-fortran@4.6.1%gcc@7.3.0
nlohmann-json: nlohmann-json:
buildable: false buildable: false
externals: externals:
@ -333,36 +261,16 @@ packages:
externals: externals:
- prefix: /usr - prefix: /usr
spec: numactl@2.0.14 spec: numactl@2.0.14
openjdk:
externals:
- prefix: /opt/psi/Programming/Java/15u36/bin
spec: openjdk@11.0.15_10
openmpi:
externals:
- prefix: /opt/psi/Compiler/openmpi/4.1.3_slurm/gcc/11.2.0
spec: openmpi@4.1.3%gcc@11.2.0
- prefix: /opt/psi/Compiler/openmpi/4.1.3_slurm/intel/20.4
spec: openmpi@4.1.3%intel@20.4
openssh: openssh:
buildable: false buildable: false
externals: externals:
- prefix: /usr - prefix: /usr
spec: openssh@7.4p1 spec: openssh@7.4p1
openssl:
externals:
- prefix: /opt/psi/Programming/intel/22.2/intelpython/python3.9
spec: openssl@1.1.1n
- prefix: /usr
spec: openssl@1.0.2k-fips
pcre: pcre:
buildable: false buildable: false
externals: externals:
- prefix: /usr - prefix: /usr
spec: pcre@8.32 spec: pcre@8.32
perl:
externals:
- prefix: /opt/psi/Programming/perl/5.30.0
spec: perl@5.30.0+cpanm+threads
pkg-config: pkg-config:
buildable: false buildable: false
externals: externals:
@ -372,10 +280,6 @@ packages:
externals: externals:
- prefix: /usr - prefix: /usr
spec: python@2.7.5 spec: python@2.7.5
r:
externals:
- prefix: /opt/psi/Programming/R/3.2.5
spec: r@4.1.1.0
rsync: rsync:
buildable: false buildable: false
externals: externals:
@ -391,10 +295,6 @@ packages:
externals: externals:
- prefix: /usr - prefix: /usr
spec: sed@4.2.2 spec: sed@4.2.2
slurm:
externals:
- prefix: /opt/psi/Batchsystem/slurm/21.08.6
spec: slurm@21.08.6
subversion: subversion:
buildable: false buildable: false
externals: externals:
@ -405,23 +305,11 @@ packages:
externals: externals:
- prefix: /usr - prefix: /usr
spec: tar@1.26 spec: tar@1.26
tcl:
externals:
- prefix: /opt/psi/Programming/Tcl/8.6.9
spec: tcl@8.6.9
texinfo: texinfo:
buildable: false buildable: false
externals: externals:
- prefix: /usr - prefix: /usr
spec: texinfo@5.1 spec: texinfo@5.1
texlive:
externals:
- prefix: /opt/psi/Tools/texlive/2017
spec: texlive@20170524
ucx:
externals:
- prefix: /opt/psi/Libraries/ucx/1.9.0
spec: ucx@1.9.0
xerces-c: xerces-c:
buildable: false buildable: false
externals: externals: