ADD: first aarch64 system config & envs

This commit is contained in:
2024-09-26 15:54:48 +02:00
parent 1f3415f645
commit 006ba2de49
9 changed files with 476 additions and 0 deletions

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---
spack:
concretizer:
unify: false
config:
install_tree:
root: $spack/opt/spack/stable
definitions:
- gcc_12.3_mpich:
- relion@4.0.1/ve5sish #+cuda
include:
- $spack/spack-psi/env/$os/$target_family/sysconfigs/packages.yaml
- $spack/spack-psi/env/$os/$target_family/sysconfigs/compilers.yaml
mirrors:
local_psi: file:///afs/psi.ch/software/spack/testing
modules:
default:
roots:
tcl: $spack/opt/spack/stable/modulefiles
specs:
- matrix:
- [$gcc_12.3_mpich]
- ['%gcc@12.3']
- [^cray-mpich]
view: false

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spack:
concretizer:
unify: false
config:
install_tree:
root: $spack/opt/spack/testing
# Strongly adviced to avoid problems with buildcaches
padded_length: 256
include:
- $spack/spack-psi/env/$os/$target_family/sysconfigs/packages.yaml
- $spack/spack-psi/env/$os/$target_family/sysconfigs/compilers.yaml
mirrors:
local_psi: file:///afs/psi.ch/software/spack/testing
modules:
default:
roots:
tcl: $spack/opt/spack/testing/modulefiles
specs: []
view: false

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spack:
concretizer:
unify: false
config:
install_tree:
root: $spack/opt/spack/unstable
definitions:
- gcc_7.5.0:
- visit@3.3.3/fo37wwb
- gcc_12.3:
- fastqc@0.12.1/eyuqqvf
- ffbidx@main/lfacuhw
- star@2.7.11a/gdgr2ea
- sratoolkit@3.1.1/7oqp6a3
- gcc_12.3_mpich:
- cp2k@2024.1/2jesise #~cuda
- cp2k@2024.1/zqm5fme #+cuda
- quantum-espresso@7.3.1/n6mulig #~cuda
- opal@2024.1.0/mhg3mdx
- py-alphafold@2.3.2/xkw7tfm #+cuda
- gcc_12.3_openmpi:
- gromacs@2024.1/3n7qspb #+cuda
- nvhpc_23.9_openmpi:
- quantum-espresso@7.3.1/le35al7 #+cuda
include:
- $spack/spack-psi/env/$os/$target_family/sysconfigs/packages.yaml
- $spack/spack-psi/env/$os/$target_family/sysconfigs/compilers.yaml
mirrors:
local_psi: file:///afs/psi.ch/software/spack/testing
modules:
default:
roots:
tcl: $spack/opt/spack/unstable/modulefiles
specs:
- matrix:
- [$gcc_7.5.0]
- ['%gcc@7.5.0']
- matrix:
- [$gcc_12.3]
- ['%gcc@12.3']
- matrix:
- [$gcc_12.3_mpich]
- ['%gcc@12.3']
- [^cray-mpich]
- matrix:
- [$gcc_12.3_openmpi]
- ['%gcc@12.3']
- [^openmpi]
- matrix:
- [$nvhpc_23.9_openmpi]
- ['%nvhpc@23.9']
- [^openmpi]
view: false

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compilers:
- compiler:
spec: cce@=17.0.0
paths:
cc: cc
cxx: CC
f77: ftn
fc: ftn
flags: {}
operating_system: sles15
target: x86_64
modules:
- libfabric/1.15.2.0
- PrgEnv-cray/8.5.0
- cce/17.0.0
environment: {}
extra_rpaths: []
- compiler:
spec: gcc@=12.3
paths:
cc: /usr/bin/gcc-12
cxx: /usr/bin/g++-12
f77: /usr/bin/gfortran-12
fc: /usr/bin/gfortran-12
flags: {}
operating_system: sles15
target: x86_64
modules:
- libfabric/1.15.2.0
- PrgEnv-gnu/8.5.0
- gcc-native/12.3
environment: {}
extra_rpaths: []
- compiler:
spec: gcc@=7.5.0
paths:
cc: /usr/bin/gcc
cxx: /usr/bin/g++
f77: /usr/bin/gfortran
fc: /usr/bin/gfortran
flags: {}
operating_system: sles15
target: x86_64
modules:
- libfabric/1.15.2.0
environment: {}
extra_rpaths: []
- compiler:
spec: nvhpc@=23.9
paths:
cc: /opt/nvidia/hpc_sdk/Linux_x86_64/23.9/compilers/bin/nvc
cxx: /opt/nvidia/hpc_sdk/Linux_x86_64/23.9/compilers/bin/nvc++
f77: /opt/nvidia/hpc_sdk/Linux_x86_64/23.9/compilers/bin/nvfortran
fc: /opt/nvidia/hpc_sdk/Linux_x86_64/23.9/compilers/bin/nvfortran
flags: {}
operating_system: sles15
target: x86_64
modules:
- nvhpc-nompi/23.9
- libfabric/1.15.2.0
environment:
prepend_path:
LD_LIBRARY_PATH: /opt/nvidia/hpc_sdk/Linux_x86_64/23.9/math_libs/lib64/stubs
extra_rpaths: []

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packages:
all:
compiler: [gcc@12.3, cce, nvhpc]
providers:
blas: [cray-libsci, openblas, nvhpc]
lapack: [cray-libsci, openblas, nvhpc]
mpi: [cray-mpich, openmpi]
pkgconfig: [pkg-config]
scalapack: [cray-libsci]
require:
- spec: "os=sles15"
- spec: "target=x86_64"
when: "%gcc"
- spec: "target=zen3"
when: "%nvhpc"
# Grace Hopper arch
variants:
- cuda_arch=80
berkeley-db:
require: '%gcc@7.5.0'
boost:
require: '%gcc@7.5.0'
ca-certificates-mozilla:
require: '%gcc@7.5.0'
cairo:
require: '%gcc@7.5.0'
cmake:
require: '%gcc@7.5.0'
coreutils:
require: '%gcc@7.5.0'
cray-libsci:
buildable: false
externals:
- modules:
- cray-libsci
prefix: /opt/cray/pe/libsci/23.12.5/cray/17.0/x86_64
spec: cray-libsci@23.12.5%cce@17.0.0 +mpi +openmp
- modules:
- cray-libsci
prefix: /opt/cray/pe/libsci/23.12.5/GNU/12.3/x86_64/
spec: cray-libsci@23.12.5%gcc@12.3 +mpi +openmp
cray-mpich:
buildable: false
externals:
- modules:
- cray-mpich
prefix: /opt/cray/pe/mpich/8.1.28/ofi/cray/17.0
spec: cray-mpich@8.1.28%cce@17.0.0
- modules:
- cray-mpich
prefix: /opt/cray/pe/mpich/8.1.28/ofi/gnu/12.3
spec: cray-mpich@8.1.28%gcc@12.3
cray-pmi:
buildable: false
externals:
- modules:
- cray-pmi
prefix: /opt/cray/pe/pmi/6.1.13
spec: cray-pmi@6.1.13%gcc
cuda:
prefer:
- spec: '@12.2.0'
require: '@12.2.0:'
externals:
- modules:
- nvhpc-nompi/23.9
prefix: /opt/nvidia/hpc_sdk/Linux_x86_64/23.9/cuda
spec: cuda@12.2.0%nvhpc@23.9
curl:
require: '%gcc@7.5.0'
expat:
require: '%gcc@7.5.0'
fftw:
externals:
- modules:
- cray-fftw/3.3.10.6
prefix: /opt/cray/pe/fftw/3.3.10.6/x86_64
spec: fftw@3.3.10.6+mpi+openmp~pfft_patches precision=double,float%gcc@12.3
findutils:
require: '%gcc@7.5.0'
flex:
require: '%gcc@7.5.0'
fltk:
require: '%gcc@7.5.0'
fontconfig:
require: '%gcc@7.5.0'
gawk:
require: '%gcc@7.5.0'
gcc:
require: '%gcc@7.5.0'
gdbm:
require: '%gcc@7.5.0'
gettext:
externals:
- prefix: /usr
spec: 'gettext@0.20.2'
git:
require: '%gcc@7.5.0'
gmake:
require: '%gcc@7.5.0'
groff:
require: '%gcc@7.5.0'
gtkplus:
require: 'default_library=shared,static'
hdf5:
prefer:
- spec: '~mpi'
externals:
- modules:
- cray-hdf5/1.12.2.9
prefix: /opt/cray/pe/hdf5/1.12.2.9/crayclang/17.0
spec: hdf5@1.12.2+cxx+fortran+hl~mpi+shared~szip~threadsafe%cce@17.0.0
- modules:
- cray-parallel-hdf5/1.12.2.9
prefix: /opt/cray/pe/hdf5-parallel/1.12.2.9/crayclang/17.0
spec: hdf5@1.12.2+cxx+fortran+hl+mpi+shared~szip~threadsafe%cce@17.0.0
- modules:
- cray-hdf5/1.12.2.9
prefix: /opt/cray/pe/hdf5/1.12.2.9/gnu/12.3
spec: hdf5@1.12.2+cxx+fortran+hl~mpi+shared~szip~threadsafe%gcc@12.3
- modules:
- cray-parallel-hdf5/1.12.2.9
prefix: /opt/cray/pe/hdf5-parallel/1.12.2.9/gnu/12.3
spec: hdf5@1.12.2+cxx+fortran+hl+mpi+shared~szip~threadsafe%gcc@12.3
libbsd:
require: '%gcc@7.5.0'
libevent:
require: '%gcc@7.5.0'
# Crayism
libfabric:
buildable: false
externals:
- modules:
- libfabric/1.15.2.0
prefix: /opt/cray/libfabric/1.15.2.0
spec: libfabric@1.15.2.0
libiconv:
require: '%gcc@7.5.0'
libidn2:
require: '%gcc@7.5.0'
libmd:
require: '%gcc@7.5.0'
libpciaccess:
require: '%gcc@7.5.0'
libsigsegv:
require: '%gcc@7.5.0'
libtool:
require: '%gcc@7.5.0'
libxml2:
require: '%gcc@7.5.0'
llvm:
require: '%gcc@7.5.0'
m4:
require: '%gcc@7.5.0'
munge:
buildable: false
externals:
- prefix: /usr
spec: munge@0.5.15
ncurses:
require: '%gcc@7.5.0'
netcdf-c:
externals:
- modules:
- cray-netcdf/4.9.0.9
prefix: /opt/cray/pe/netcdf/4.9.0.9/crayclang/17.0
spec: netcdf-c@4.9.0.9~dap~hdf4~jna~mpi~parallel-netcdf+shared%cce@17.0.0
- modules:
- cray-netcdf-hdf5parallel/4.9.0.9
prefix: /opt/cray/pe/netcdf-hdf5parallel/4.9.0.9/crayclang/17.0
spec: netcdf-c@4.9.0.9~dap~hdf4~jna+mpi~parallel-netcdf+shared%cce@17.0.0
- modules:
- cray-netcdf/4.9.0.9
prefix: /opt/cray/pe/netcdf/4.9.0.9/gnu/12.3
spec: netcdf-c@4.9.0.9~dap~hdf4~jna~mpi~parallel-netcdf+shared%gcc@12.3
- modules:
- cray-netcdf-hdf5parallel/4.9.0.9
prefix: /opt/cray/pe/netcdf-hdf5parallel/4.9.0.9/gnu/12.3
spec: netcdf-c@4.9.0.9~dap~hdf4~jna+mpi~parallel-netcdf+shared%gcc@12.3
netcdf-fortran:
externals:
- modules:
- cray-netcdf/4.9.0.9
prefix: /opt/cray/pe/netcdf/4.9.0.9/crayclang/17.0
spec: netcdf-fortran@4.9.0.9~doc+shared%cce@17.0.0
- modules:
- cray-netcdf/4.9.0.9
prefix: /opt/cray/pe/netcdf/4.9.0.9/gnu/12.3
spec: netcdf-fortran@4.9.0.9~doc+shared%gcc@12.3
ninja:
require: '%gcc@7.5.0'
numactl:
require: '%gcc@7.5.0'
nvhpc:
externals:
- modules:
- nvhpc-nompi/23.9
spec: nvhpc@23.9
opal:
require:
- spec: '%gcc'
- message: Opal 2022.1.0 only builds with gcc@10.4.0
spec: '%gcc@10.4.0 ^openmpi'
when: '@2022.1.0'
opengl:
require: '%gcc@7.5.0'
openldap:
buildable: false
externals:
- prefix: /usr
spec: openldap@2.4.46
openmpi:
require:
- spec: 'schedulers=slurm fabrics=ofi +pmi pmi-interface=cray +cxx +cxx_exceptions +cuda +legacylaunchers'
when: '%gcc'
- spec: 'schedulers=slurm fabrics=ofi +pmi pmi-interface=cray +cxx +cuda +legacylaunchers'
when: '%nvhpc'
openssh:
require: '%gcc@7.5.0'
openssl:
require: '%gcc@7.5.0'
parallel-netcdf:
externals:
- modules:
- cray-parallel-netcdf/1.12.3.9
prefix: /opt/cray/pe/parallel-netcdf/1.12.3.9/crayclang/17.0
spec: parallel-netcdf@1.12.3.9+cxx+fortran%cce@17.0.0
- modules:
- cray-parallel-netcdf/1.12.3.9
prefix: /opt/cray/pe/parallel-netcdf/1.12.3.9/gnu/12.3
spec: parallel-netcdf@1.12.3.9+cxx+fortran%gcc@12.3
perl:
buildable: false
externals:
- prefix: /usr
spec: perl@5.26.1
pkg-config:
require: '%gcc@7.5.0'
pkgconf:
require: '%gcc@7.5.0'
py-fypp:
require: '%gcc@7.5.0'
python:
require: '%gcc@7.5.0'
# QE is unable to find out cray-libsci
quantum-espresso:
require: ~scalapack ^openblas
rdma-core:
require: '%gcc@7.5.0'
readline:
require: '%gcc@7.5.0'
slurm:
buildable: false
externals:
- prefix: /usr
spec: slurm@23.11.8%gcc@7.5.0 +cgroup+gtk+hwloc+mariadb+nvml+pam+pmix+restd
sqlite:
require: '%gcc@7.5.0'
tar:
require: '%gcc@7.5.0'
texinfo:
require: '%gcc@7.5.0'
unuran:
require: '%gcc@7.5.0'
util-linux-uuid:
require: '%gcc@7.5.0'
util-macros:
require: '%gcc@7.5.0'
xpmem:
buildable: false
externals:
- modules:
- xpmem/2.8.2-1.0_3.9__g84a27a5.shasta
spec: xpmem@2.8.2-1
xxhash:
require: '%gcc@7.5.0'
xz:
externals:
- prefix: /usr
spec: xz@5.2.3
zlib:
require: '%gcc@7.5.0'
zstd:
require: '%gcc@7.5.0'

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spack:
concretizer:
unify: false
include:
- $spack/spack-psi/env/sles15/x86_64/sysconfigs/packages.yaml
- $spack/spack-psi/env/sles15/x86_64/sysconfigs/compilers.yaml
include_concrete:
- /afs/psi.ch/sys/spack/system/spack-psi/env/sles15/x86_64/admin/stable
specs: []
upstreams:
stable:
install_tree: $spack/opt/spack/stable
view: false

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spack:
concretizer:
unify: false
include:
- $spack/spack-psi/env/sles15/x86_64/sysconfigs/packages.yaml
- $spack/spack-psi/env/sles15/x86_64/sysconfigs/compilers.yaml
include_concrete:
- /afs/psi.ch/sys/spack/system/spack-psi/env/sles15/x86_64/admin/stable
- /afs/psi.ch/sys/spack/system/spack-psi/env/sles15/x86_64/admin/unstable
specs: []
upstreams:
stable:
install_tree: $spack/opt/spack/stable
unstable:
install_tree: $spack/opt/spack/unstable
view: false