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Creating a paired file in python format for efficient refactoring
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Creating a paired file in mardown format for efficient text authoring
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Disable autosaving when working on the paired file
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<h1 id="jupytext-efficient-editing">Jupytext - efficient editing<a class="headerlink" href="#jupytext-efficient-editing" title="Permanent link"></a></h1>
<p><a href="https://github.com/mwouts/jupytext">Jupytext</a> is a Jupyter serverextension
that allows creating a text file from a notebook that can be kept in sync with
it <strong>with the aim of using more efficient editors or IDEs on it</strong>. The file can
be created in a number of formats, e.g. <em>markdown, </em>.py (light Script)<em>, and
others. <code>Jupytext</code> will keep the both the notebook and this </em><em>paired</em>* file in
sync: If you save the paired file, changes will be carried over into the
notebook, and vice versa. This pairing will persist also in new sessions of
your notebook until you explicitely remove it again.</p>
<p>The paired file contains only the cell contents and not the output. Therefore
it also is <strong>much better suited for revision control</strong>, since the differences
between versions are limited to the cells and these file formats yield more
meaningful text differences than the default notebook storage format.</p>
<h2 id="creating-a-paired-file-in-python-format-for-efficient-refactoring">Creating a paired file in python format for efficient refactoring<a class="headerlink" href="#creating-a-paired-file-in-python-format-for-efficient-refactoring" title="Permanent link"></a></h2>
<p>From your notebook, go to the <code>file</code> menu and navigate to the <code>jupytext</code>
submenu. Select the <strong>light script</strong> pairing option. This will create a <code>*.py</code>
file version with the same basename as your notebook file.</p>
<figure>
<p><a class="glightbox" data-type="image" data-width="auto" data-height="auto" href="../../../images/jupyter/jupytext_menu.png" data-desc-position="bottom"><img alt="Jupytext menu" src="../../../images/jupyter/jupytext_menu.png"></a></p>
<figcaption></figcaption>
</figure>
<p>You can edit that file separately in your favourite python editor. The markdown
text parts will be conserved in the file in the form of python comments.</p>
<p>When you save the file and do a browser page reload of your jupyter notebook,
you will see all the changes carried over into your jupyter notebook.</p>
<h2 id="creating-a-paired-file-in-mardown-format-for-efficient-text-authoring">Creating a paired file in mardown format for efficient text authoring<a class="headerlink" href="#creating-a-paired-file-in-mardown-format-for-efficient-text-authoring" title="Permanent link"></a></h2>
<p>If you want to efficiently work on the descriptive text base of your notebook,
just pair it using the <code>Pair notebook with Markdown</code> menu item and edit the
generated <code>*.md</code> file with your favourite Markdown editor.</p>
<h2 id="disable-autosaving-when-working-on-the-paired-file">Disable autosaving when working on the paired file<a class="headerlink" href="#disable-autosaving-when-working-on-the-paired-file" title="Permanent link"></a></h2>
<p>Your notebooks usually auto save every 2 min (default). Turn this feature off
when working with the paired file. Otherwise Jupyter will continue to save the
state while you are editing the paired file, and the changes will be synced to
the disk version of the paired file. You can disable the autosave by unchecking
the <code>Autosave notebook</code> menu item in the Juytext menu (see above image).</p>
<h2 id="further-information">Further information<a class="headerlink" href="#further-information" title="Permanent link"></a></h2>
<p>Please refer to:</p>
<ul>
<li><a href="https://jupytext.readthedocs.io/en/latest/faq.html">the Jupytext FAQ</a></li>
<li><a href="https://jupytext.readthedocs.io/en/latest/index.html">the Jupytext documentation</a></li>
</ul>
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