HPCE/gitea-pages
0
0
Fork 0
Code Issues 3 Pull Requests Actions Packages Projects Activity
Files
0630bafb43cc9b996f31220bdd9f09ea6b5f90e4
gitea-pages/merlin5/slurm-configuration/index.html
Gitea Actions 0630bafb43 Deployed acde833 with MkDocs version: 1.6.1
2026-02-10 11:25:50 +00:00

4676 lines
79 KiB
HTML
Raw Blame History

<!DOCTYPE html><html lang="en" class="no-js"><head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width,initial-scale=1">
<link rel="canonical" href="https://hpce.pages.psi.ch/merlin5/slurm-configuration/">
<link rel="icon" href="../../images/favicon.ico">
<meta name="generator" content="mkdocs-1.6.1, mkdocs-material-9.7.0">
<title>Slurm Configuration - HPCE User Documentation</title>
<link rel="stylesheet" href="../../assets/stylesheets/main.618322db.min.css">
<link rel="stylesheet" href="../../assets/stylesheets/palette.ab4e12ef.min.css">
<link rel="preconnect" href="https://fonts.gstatic.com" crossorigin>
<link rel="stylesheet" href="https://fonts.googleapis.com/css?family=Roboto:300,300i,400,400i,700,700i%7CRoboto+Mono:400,400i,700,700i&amp;display=fallback">
<style>:root{--md-text-font:"Roboto";--md-code-font:"Roboto Mono"}</style>
<link rel="stylesheet" href="../../css/custom-nav.css">
<script>__md_scope=new URL("../..",location),__md_hash=e=>[...e].reduce(((e,_)=>(e<<5)-e+_.charCodeAt(0)),0),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
<link href="../../assets/stylesheets/glightbox.min.css" rel="stylesheet"><script src="../../assets/javascripts/glightbox.min.js"></script><style id="glightbox-style">
html.glightbox-open { overflow: initial; height: 100%; }
.gslide-title { margin-top: 0px; user-select: text; }
.gslide-desc { color: #666; user-select: text; }
.gslide-image img { background: white; }
.gscrollbar-fixer { padding-right: 15px; }
.gdesc-inner { font-size: 0.75rem; }
body[data-md-color-scheme="slate"] .gdesc-inner { background: var(--md-default-bg-color); }
body[data-md-color-scheme="slate"] .gslide-title { color: var(--md-default-fg-color); }
body[data-md-color-scheme="slate"] .gslide-desc { color: var(--md-default-fg-color); }
</style></head>
<body dir="ltr" data-md-color-scheme="default" data-md-color-primary="indigo" data-md-color-accent="indigo">
<input class="md-toggle" data-md-toggle="drawer" type="checkbox" id="__drawer" autocomplete="off">
<input class="md-toggle" data-md-toggle="search" type="checkbox" id="__search" autocomplete="off">
<label class="md-overlay" for="__drawer"></label>
<div data-md-component="skip">
<a href="#slurm-configuration" class="md-skip">
Skip to content
</a>
</div>
<div data-md-component="announce">
</div>
<header class="md-header md-header--shadow md-header--lifted" data-md-component="header">
<nav class="md-header__inner md-grid" aria-label="Header">
<a href="../.." title="HPCE User Documentation" class="md-header__button md-logo" aria-label="HPCE User Documentation" data-md-component="logo">
<img src="../../images/hpce_logo.png" alt="logo">
</a>
<label class="md-header__button md-icon" for="__drawer">
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M3 6h18v2H3zm0 5h18v2H3zm0 5h18v2H3z"></path></svg>
</label>
<div class="md-header__title" data-md-component="header-title">
<div class="md-header__ellipsis">
<div class="md-header__topic">
<span class="md-ellipsis">
HPCE User Documentation
</span>
</div>
<div class="md-header__topic" data-md-component="header-topic">
<span class="md-ellipsis">
Slurm Configuration
</span>
</div>
</div>
</div>
<form class="md-header__option" data-md-component="palette">
<input class="md-option" data-md-color-media="(prefers-color-scheme)" data-md-color-scheme="default" data-md-color-primary="indigo" data-md-color-accent="indigo" aria-label="Switch to light mode" type="radio" name="__palette" id="__palette_0">
<label class="md-header__button md-icon" title="Switch to light mode" for="__palette_1" hidden>
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M3.9 12c0-1.71 1.39-3.1 3.1-3.1h4V7H7a5 5 0 0 0-5 5 5 5 0 0 0 5 5h4v-1.9H7c-1.71 0-3.1-1.39-3.1-3.1M8 13h8v-2H8zm9-6h-4v1.9h4c1.71 0 3.1 1.39 3.1 3.1s-1.39 3.1-3.1 3.1h-4V17h4a5 5 0 0 0 5-5 5 5 0 0 0-5-5"></path></svg>
</label>
<input class="md-option" data-md-color-media="(prefers-color-scheme: light)" data-md-color-scheme="default" data-md-color-primary="indigo" data-md-color-accent="indigo" aria-label="Switch to dark mode" type="radio" name="__palette" id="__palette_1">
<label class="md-header__button md-icon" title="Switch to dark mode" for="__palette_2" hidden>
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M17 7H7a5 5 0 0 0-5 5 5 5 0 0 0 5 5h10a5 5 0 0 0 5-5 5 5 0 0 0-5-5m0 8a3 3 0 0 1-3-3 3 3 0 0 1 3-3 3 3 0 0 1 3 3 3 3 0 0 1-3 3"></path></svg>
</label>
<input class="md-option" data-md-color-media="(prefers-color-scheme: dark)" data-md-color-scheme="slate" data-md-color-primary="indigo" data-md-color-accent="indigo" aria-label="Switch to system preference" type="radio" name="__palette" id="__palette_2">
<label class="md-header__button md-icon" title="Switch to system preference" for="__palette_0" hidden>
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M17 7H7a5 5 0 0 0-5 5 5 5 0 0 0 5 5h10a5 5 0 0 0 5-5 5 5 0 0 0-5-5M7 15a3 3 0 0 1-3-3 3 3 0 0 1 3-3 3 3 0 0 1 3 3 3 3 0 0 1-3 3"></path></svg>
</label>
</form>
<script>var palette=__md_get("__palette");if(palette&&palette.color){if("(prefers-color-scheme)"===palette.color.media){var media=matchMedia("(prefers-color-scheme: light)"),input=document.querySelector(media.matches?"[data-md-color-media='(prefers-color-scheme: light)']":"[data-md-color-media='(prefers-color-scheme: dark)']");palette.color.media=input.getAttribute("data-md-color-media"),palette.color.scheme=input.getAttribute("data-md-color-scheme"),palette.color.primary=input.getAttribute("data-md-color-primary"),palette.color.accent=input.getAttribute("data-md-color-accent")}for(var[key,value]of Object.entries(palette.color))document.body.setAttribute("data-md-color-"+key,value)}</script>
<label class="md-header__button md-icon" for="__search">
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M9.5 3A6.5 6.5 0 0 1 16 9.5c0 1.61-.59 3.09-1.56 4.23l.27.27h.79l5 5-1.5 1.5-5-5v-.79l-.27-.27A6.52 6.52 0 0 1 9.5 16 6.5 6.5 0 0 1 3 9.5 6.5 6.5 0 0 1 9.5 3m0 2C7 5 5 7 5 9.5S7 14 9.5 14 14 12 14 9.5 12 5 9.5 5"></path></svg>
</label>
<div class="md-search" data-md-component="search" role="dialog">
<label class="md-search__overlay" for="__search"></label>
<div class="md-search__inner" role="search">
<form class="md-search__form" name="search">
<input type="text" class="md-search__input" name="query" aria-label="Search" placeholder="Search" autocapitalize="off" autocorrect="off" autocomplete="off" spellcheck="false" data-md-component="search-query" required>
<label class="md-search__icon md-icon" for="__search">
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M9.5 3A6.5 6.5 0 0 1 16 9.5c0 1.61-.59 3.09-1.56 4.23l.27.27h.79l5 5-1.5 1.5-5-5v-.79l-.27-.27A6.52 6.52 0 0 1 9.5 16 6.5 6.5 0 0 1 3 9.5 6.5 6.5 0 0 1 9.5 3m0 2C7 5 5 7 5 9.5S7 14 9.5 14 14 12 14 9.5 12 5 9.5 5"></path></svg>
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M20 11v2H8l5.5 5.5-1.42 1.42L4.16 12l7.92-7.92L13.5 5.5 8 11z"></path></svg>
</label>
<nav class="md-search__options" aria-label="Search">
<button type="reset" class="md-search__icon md-icon" title="Clear" aria-label="Clear" tabindex="-1">
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M19 6.41 17.59 5 12 10.59 6.41 5 5 6.41 10.59 12 5 17.59 6.41 19 12 13.41 17.59 19 19 17.59 13.41 12z"></path></svg>
</button>
</nav>
</form>
<div class="md-search__output">
<div class="md-search__scrollwrap" tabindex="0" data-md-scrollfix>
<div class="md-search-result" data-md-component="search-result">
<div class="md-search-result__meta">
Initializing search
</div>
<ol class="md-search-result__list" role="presentation"></ol>
</div>
</div>
</div>
</div>
</div>
<div class="md-header__source">
<a href="https://gitea.psi.ch/hpce/gitea-pages" title="Go to repository" class="md-source" data-md-component="source">
<div class="md-source__icon md-icon">
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><!--! Font Awesome Free 7.1.0 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license/free (Icons: CC BY 4.0, Fonts: SIL OFL 1.1, Code: MIT License) Copyright 2025 Fonticons, Inc.--><path d="M439.6 236.1 244 40.5c-5.4-5.5-12.8-8.5-20.4-8.5s-15 3-20.4 8.4L162.5 81l51.5 51.5c27.1-9.1 52.7 16.8 43.4 43.7l49.7 49.7c34.2-11.8 61.2 31 35.5 56.7-26.5 26.5-70.2-2.9-56-37.3L240.3 199v121.9c25.3 12.5 22.3 41.8 9.1 55-6.4 6.4-15.2 10.1-24.3 10.1s-17.8-3.6-24.3-10.1c-17.6-17.6-11.1-46.9 11.2-56v-123c-20.8-8.5-24.6-30.7-18.6-45L142.6 101 8.5 235.1C3 240.6 0 247.9 0 255.5s3 15 8.5 20.4l195.6 195.7c5.4 5.4 12.7 8.4 20.4 8.4s15-3 20.4-8.4l194.7-194.7c5.4-5.4 8.4-12.8 8.4-20.4s-3-15-8.4-20.4"></path></svg>
</div>
<div class="md-source__repository">
User Documentation Repository
</div>
</a>
</div>
</nav>
<nav class="md-tabs" aria-label="Tabs" data-md-component="tabs">
<div class="md-grid">
<ul class="md-tabs__list">
<li class="md-tabs__item">
<a href="../.." class="md-tabs__link">
Home
</a>
</li>
<li class="md-tabs__item">
<a href="../../news/" class="md-tabs__link">
News
</a>
</li>
<li class="md-tabs__item">
<a href="../../merlin7/01-Quick-Start-Guide/introduction/" class="md-tabs__link">
Merlin 7
</a>
</li>
<li class="md-tabs__item">
<a href="../../merlin6/introduction/" class="md-tabs__link">
Merlin 6
</a>
</li>
<li class="md-tabs__item">
<a href="../../meg/introduction/" class="md-tabs__link">
MeG
</a>
</li>
<li class="md-tabs__item">
<a href="../../cscs-userlab/introduction/" class="md-tabs__link">
PSI@CSCS
</a>
</li>
<li class="md-tabs__item">
<a href="../../support/introduction/" class="md-tabs__link">
Support
</a>
</li>
</ul>
</div>
</nav>
</header>
<div class="md-container" data-md-component="container">
<main class="md-main" data-md-component="main">
<div class="md-main__inner md-grid">
<div class="md-sidebar md-sidebar--primary" data-md-component="sidebar" data-md-type="navigation">
<div class="md-sidebar__scrollwrap">
<div class="md-sidebar__inner">
<nav class="md-nav md-nav--primary md-nav--lifted" aria-label="Navigation" data-md-level="0">
<label class="md-nav__title" for="__drawer">
<a href="../.." title="HPCE User Documentation" class="md-nav__button md-logo" aria-label="HPCE User Documentation" data-md-component="logo">
<img src="../../images/hpce_logo.png" alt="logo">
</a>
HPCE User Documentation
</label>
<div class="md-nav__source">
<a href="https://gitea.psi.ch/hpce/gitea-pages" title="Go to repository" class="md-source" data-md-component="source">
<div class="md-source__icon md-icon">
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><!--! Font Awesome Free 7.1.0 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license/free (Icons: CC BY 4.0, Fonts: SIL OFL 1.1, Code: MIT License) Copyright 2025 Fonticons, Inc.--><path d="M439.6 236.1 244 40.5c-5.4-5.5-12.8-8.5-20.4-8.5s-15 3-20.4 8.4L162.5 81l51.5 51.5c27.1-9.1 52.7 16.8 43.4 43.7l49.7 49.7c34.2-11.8 61.2 31 35.5 56.7-26.5 26.5-70.2-2.9-56-37.3L240.3 199v121.9c25.3 12.5 22.3 41.8 9.1 55-6.4 6.4-15.2 10.1-24.3 10.1s-17.8-3.6-24.3-10.1c-17.6-17.6-11.1-46.9 11.2-56v-123c-20.8-8.5-24.6-30.7-18.6-45L142.6 101 8.5 235.1C3 240.6 0 247.9 0 255.5s3 15 8.5 20.4l195.6 195.7c5.4 5.4 12.7 8.4 20.4 8.4s15-3 20.4-8.4l194.7-194.7c5.4-5.4 8.4-12.8 8.4-20.4s-3-15-8.4-20.4"></path></svg>
</div>
<div class="md-source__repository">
User Documentation Repository
</div>
</a>
</div>
<ul class="md-nav__list" data-md-scrollfix>
<li class="md-nav__item">
<a href="../.." class="md-nav__link">
<span class="md-ellipsis">
Home
</span>
</a>
</li>
<li class="md-nav__item md-nav__item--nested">
<input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_2">
<div class="md-nav__link md-nav__container">
<a href="../../news/" class="md-nav__link ">
<span class="md-ellipsis">
News
</span>
</a>
<label class="md-nav__link " for="__nav_2" id="__nav_2_label" tabindex="0">
<span class="md-nav__icon md-icon"></span>
</label>
</div>
<nav class="md-nav" data-md-level="1" aria-labelledby="__nav_2_label" aria-expanded="false">
<label class="md-nav__title" for="__nav_2">
<span class="md-nav__icon md-icon"></span>
News
</label>
<ul class="md-nav__list" data-md-scrollfix>
<li class="md-nav__item md-nav__item--nested">
<input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_2_2">
<label class="md-nav__link" for="__nav_2_2" id="__nav_2_2_label" tabindex="0">
<span class="md-ellipsis">
Archive
</span>
<span class="md-nav__icon md-icon"></span>
</label>
<nav class="md-nav" data-md-level="2" aria-labelledby="__nav_2_2_label" aria-expanded="false">
<label class="md-nav__title" for="__nav_2_2">
<span class="md-nav__icon md-icon"></span>
Archive
</label>
<ul class="md-nav__list" data-md-scrollfix>
<li class="md-nav__item">
<a href="../../news/archive/2026/" class="md-nav__link">
<span class="md-ellipsis">
2026
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../news/archive/2024/" class="md-nav__link">
<span class="md-ellipsis">
2024
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../news/archive/2019/" class="md-nav__link">
<span class="md-ellipsis">
2019
</span>
</a>
</li>
</ul>
</nav>
</li>
</ul>
</nav>
</li>
<li class="md-nav__item md-nav__item--nested">
<input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_3">
<label class="md-nav__link" for="__nav_3" id="__nav_3_label" tabindex="0">
<span class="md-ellipsis">
Merlin 7
</span>
<span class="md-nav__icon md-icon"></span>
</label>
<nav class="md-nav" data-md-level="1" aria-labelledby="__nav_3_label" aria-expanded="false">
<label class="md-nav__title" for="__nav_3">
<span class="md-nav__icon md-icon"></span>
Merlin 7
</label>
<ul class="md-nav__list" data-md-scrollfix>
<li class="md-nav__item md-nav__item--nested">
<input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_3_1">
<label class="md-nav__link" for="__nav_3_1" id="__nav_3_1_label" tabindex="0">
<span class="md-ellipsis">
Quick Start Guide
</span>
<span class="md-nav__icon md-icon"></span>
</label>
<nav class="md-nav" data-md-level="2" aria-labelledby="__nav_3_1_label" aria-expanded="false">
<label class="md-nav__title" for="__nav_3_1">
<span class="md-nav__icon md-icon"></span>
Quick Start Guide
</label>
<ul class="md-nav__list" data-md-scrollfix>
<li class="md-nav__item">
<a href="../../merlin7/01-Quick-Start-Guide/introduction/" class="md-nav__link">
<span class="md-ellipsis">
Introduction
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin7/01-Quick-Start-Guide/code-of-conduct/" class="md-nav__link">
<span class="md-ellipsis">
Code Of Conduct
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin7/01-Quick-Start-Guide/requesting-accounts/" class="md-nav__link">
<span class="md-ellipsis">
Requesting Merlin Accounts
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin7/01-Quick-Start-Guide/requesting-projects/" class="md-nav__link">
<span class="md-ellipsis">
Requesting a Merlin Project
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin7/01-Quick-Start-Guide/accessing-interactive-nodes/" class="md-nav__link">
<span class="md-ellipsis">
Accessing Interactive Nodes
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin7/01-Quick-Start-Guide/accessing-slurm/" class="md-nav__link">
<span class="md-ellipsis">
Accessing Slurm Cluster
</span>
</a>
</li>
</ul>
</nav>
</li>
<li class="md-nav__item md-nav__item--nested">
<input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_3_2">
<label class="md-nav__link" for="__nav_3_2" id="__nav_3_2_label" tabindex="0">
<span class="md-ellipsis">
How To Use Merlin7
</span>
<span class="md-nav__icon md-icon"></span>
</label>
<nav class="md-nav" data-md-level="2" aria-labelledby="__nav_3_2_label" aria-expanded="false">
<label class="md-nav__title" for="__nav_3_2">
<span class="md-nav__icon md-icon"></span>
How To Use Merlin7
</label>
<ul class="md-nav__list" data-md-scrollfix>
<li class="md-nav__item">
<a href="../../merlin7/02-How-To-Use-Merlin/connect-from-linux/" class="md-nav__link">
<span class="md-ellipsis">
Connecting from a Linux Client
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin7/02-How-To-Use-Merlin/connect-from-windows/" class="md-nav__link">
<span class="md-ellipsis">
Connecting from a Windows Client
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin7/02-How-To-Use-Merlin/connect-from-macos/" class="md-nav__link">
<span class="md-ellipsis">
Connecting from a MacOS Client
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin7/02-How-To-Use-Merlin/storage/" class="md-nav__link">
<span class="md-ellipsis">
Merlin7 Storage
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin7/02-How-To-Use-Merlin/transfer-data/" class="md-nav__link">
<span class="md-ellipsis">
Transferring Data
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin7/02-How-To-Use-Merlin/archive/" class="md-nav__link">
<span class="md-ellipsis">
Archive &amp; PSI Data Catalog
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin7/02-How-To-Use-Merlin/nomachine/" class="md-nav__link">
<span class="md-ellipsis">
Remote Desktop Access to Merlin7
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin7/02-How-To-Use-Merlin/merlin-rmount/" class="md-nav__link">
<span class="md-ellipsis">
Using merlin_rmount
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin7/02-How-To-Use-Merlin/merlin_tools/" class="md-nav__link">
<span class="md-ellipsis">
Merlin7 Tools
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin7/02-How-To-Use-Merlin/ssh-keys/" class="md-nav__link">
<span class="md-ellipsis">
Configuring SSH Keys in Merlin
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin7/02-How-To-Use-Merlin/kerberos/" class="md-nav__link">
<span class="md-ellipsis">
Kerberos and AFS authentication
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin7/02-How-To-Use-Merlin/software-repositories/" class="md-nav__link">
<span class="md-ellipsis">
Software repositories
</span>
</a>
</li>
</ul>
</nav>
</li>
<li class="md-nav__item md-nav__item--nested">
<input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_3_3">
<label class="md-nav__link" for="__nav_3_3" id="__nav_3_3_label" tabindex="0">
<span class="md-ellipsis">
Slurm General Documentation
</span>
<span class="md-nav__icon md-icon"></span>
</label>
<nav class="md-nav" data-md-level="2" aria-labelledby="__nav_3_3_label" aria-expanded="false">
<label class="md-nav__title" for="__nav_3_3">
<span class="md-nav__icon md-icon"></span>
Slurm General Documentation
</label>
<ul class="md-nav__list" data-md-scrollfix>
<li class="md-nav__item">
<a href="../../merlin7/03-Slurm-General-Documentation/merlin7-configuration/" class="md-nav__link">
<span class="md-ellipsis">
Slurm cluster 'merlin7'
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin7/03-Slurm-General-Documentation/slurm-configuration/" class="md-nav__link">
<span class="md-ellipsis">
Slurm merlin7 Configuration
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin7/03-Slurm-General-Documentation/interactive-jobs/" class="md-nav__link">
<span class="md-ellipsis">
Running Interactive Jobs
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin7/03-Slurm-General-Documentation/slurm-examples/" class="md-nav__link">
<span class="md-ellipsis">
Slurm Examples
</span>
</a>
</li>
</ul>
</nav>
</li>
<li class="md-nav__item md-nav__item--nested">
<input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_3_4">
<label class="md-nav__link" for="__nav_3_4" id="__nav_3_4_label" tabindex="0">
<span class="md-ellipsis">
Jupyterhub
</span>
<span class="md-nav__icon md-icon"></span>
</label>
<nav class="md-nav" data-md-level="2" aria-labelledby="__nav_3_4_label" aria-expanded="false">
<label class="md-nav__title" for="__nav_3_4">
<span class="md-nav__icon md-icon"></span>
Jupyterhub
</label>
<ul class="md-nav__list" data-md-scrollfix>
<li class="md-nav__item">
<a href="../../merlin7/04-Jupyterhub/jupyterhub/" class="md-nav__link">
<span class="md-ellipsis">
Jupyterhub on Merlin7
</span>
</a>
</li>
</ul>
</nav>
</li>
<li class="md-nav__item md-nav__item--nested">
<input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_3_5">
<label class="md-nav__link" for="__nav_3_5" id="__nav_3_5_label" tabindex="0">
<span class="md-ellipsis">
Software Support
</span>
<span class="md-nav__icon md-icon"></span>
</label>
<nav class="md-nav" data-md-level="2" aria-labelledby="__nav_3_5_label" aria-expanded="false">
<label class="md-nav__title" for="__nav_3_5">
<span class="md-nav__icon md-icon"></span>
Software Support
</label>
<ul class="md-nav__list" data-md-scrollfix>
<li class="md-nav__item">
<a href="../../merlin7/05-Software-Support/pmodules/" class="md-nav__link">
<span class="md-ellipsis">
PSI Modules
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin7/05-Software-Support/spack/" class="md-nav__link">
<span class="md-ellipsis">
Spack
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin7/05-Software-Support/openmpi/" class="md-nav__link">
<span class="md-ellipsis">
OpenMPI Support
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin7/05-Software-Support/ansys/" class="md-nav__link">
<span class="md-ellipsis">
ANSYS
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin7/05-Software-Support/ansys-rsm/" class="md-nav__link">
<span class="md-ellipsis">
ANSYS RSM (Remote Resolve Manager)
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin7/05-Software-Support/cp2k/" class="md-nav__link">
<span class="md-ellipsis">
CP2k
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin7/05-Software-Support/quantum-espresso/" class="md-nav__link">
<span class="md-ellipsis">
Quantum Espresso
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin7/05-Software-Support/lammps/" class="md-nav__link">
<span class="md-ellipsis">
LAMMPS
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin7/05-Software-Support/gromacs/" class="md-nav__link">
<span class="md-ellipsis">
GROMACS
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin7/05-Software-Support/opal-x/" class="md-nav__link">
<span class="md-ellipsis">
OPAL-X
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin7/05-Software-Support/ippl/" class="md-nav__link">
<span class="md-ellipsis">
IPPL
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin7/05-Software-Support/cray-module.env/" class="md-nav__link">
<span class="md-ellipsis">
Cray Programming Environment
</span>
</a>
</li>
</ul>
</nav>
</li>
</ul>
</nav>
</li>
<li class="md-nav__item md-nav__item--nested">
<input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_4">
<label class="md-nav__link" for="__nav_4" id="__nav_4_label" tabindex="0">
<span class="md-ellipsis">
Merlin 6
</span>
<span class="md-nav__icon md-icon"></span>
</label>
<nav class="md-nav" data-md-level="1" aria-labelledby="__nav_4_label" aria-expanded="false">
<label class="md-nav__title" for="__nav_4">
<span class="md-nav__icon md-icon"></span>
Merlin 6
</label>
<ul class="md-nav__list" data-md-scrollfix>
<li class="md-nav__item md-nav__item--nested">
<input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_4_1">
<label class="md-nav__link" for="__nav_4_1" id="__nav_4_1_label" tabindex="0">
<span class="md-ellipsis">
Quick Start Guide
</span>
<span class="md-nav__icon md-icon"></span>
</label>
<nav class="md-nav" data-md-level="2" aria-labelledby="__nav_4_1_label" aria-expanded="false">
<label class="md-nav__title" for="__nav_4_1">
<span class="md-nav__icon md-icon"></span>
Quick Start Guide
</label>
<ul class="md-nav__list" data-md-scrollfix>
<li class="md-nav__item">
<a href="../../merlin6/introduction/" class="md-nav__link">
<span class="md-ellipsis">
About Merlin6
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin6/quick-start-guide/code-of-conduct/" class="md-nav__link">
<span class="md-ellipsis">
Code Of Conduct
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin6/quick-start-guide/requesting-accounts/" class="md-nav__link">
<span class="md-ellipsis">
Requesting Merlin Accounts
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin6/quick-start-guide/requesting-projects/" class="md-nav__link">
<span class="md-ellipsis">
Requesting a Merlin Project
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin6/quick-start-guide/accessing-interactive-nodes/" class="md-nav__link">
<span class="md-ellipsis">
Accessing Interactive Nodes
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin6/quick-start-guide/accessing-slurm/" class="md-nav__link">
<span class="md-ellipsis">
Accessing Slurm Cluster
</span>
</a>
</li>
</ul>
</nav>
</li>
<li class="md-nav__item md-nav__item--nested">
<input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_4_2">
<label class="md-nav__link" for="__nav_4_2" id="__nav_4_2_label" tabindex="0">
<span class="md-ellipsis">
How To Use Merlin
</span>
<span class="md-nav__icon md-icon"></span>
</label>
<nav class="md-nav" data-md-level="2" aria-labelledby="__nav_4_2_label" aria-expanded="false">
<label class="md-nav__title" for="__nav_4_2">
<span class="md-nav__icon md-icon"></span>
How To Use Merlin
</label>
<ul class="md-nav__list" data-md-scrollfix>
<li class="md-nav__item">
<a href="../../merlin6/how-to-use-merlin/connect-from-linux/" class="md-nav__link">
<span class="md-ellipsis">
Connecting from a Linux Client
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin6/how-to-use-merlin/connect-from-windows/" class="md-nav__link">
<span class="md-ellipsis">
Connecting from a Windows Client
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin6/how-to-use-merlin/connect-from-macos/" class="md-nav__link">
<span class="md-ellipsis">
Connecting from a MacOS Client
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin6/how-to-use-merlin/storage/" class="md-nav__link">
<span class="md-ellipsis">
Merlin6 Storage
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin6/how-to-use-merlin/transfer-data/" class="md-nav__link">
<span class="md-ellipsis">
Transferring Data
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin6/how-to-use-merlin/archive/" class="md-nav__link">
<span class="md-ellipsis">
Archive &amp; PSI Data Catalog
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin6/how-to-use-merlin/ssh-keys/" class="md-nav__link">
<span class="md-ellipsis">
Configuring SSH Keys in Merlin
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin6/how-to-use-merlin/kerberos/" class="md-nav__link">
<span class="md-ellipsis">
Kerberos and AFS authentication
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin6/how-to-use-merlin/using-modules/" class="md-nav__link">
<span class="md-ellipsis">
Using PModules
</span>
</a>
</li>
</ul>
</nav>
</li>
<li class="md-nav__item md-nav__item--nested">
<input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_4_3">
<label class="md-nav__link" for="__nav_4_3" id="__nav_4_3_label" tabindex="0">
<span class="md-ellipsis">
Slurm General Documentation
</span>
<span class="md-nav__icon md-icon"></span>
</label>
<nav class="md-nav" data-md-level="2" aria-labelledby="__nav_4_3_label" aria-expanded="false">
<label class="md-nav__title" for="__nav_4_3">
<span class="md-nav__icon md-icon"></span>
Slurm General Documentation
</label>
<ul class="md-nav__list" data-md-scrollfix>
<li class="md-nav__item">
<a href="../../merlin6/slurm-general-docs/slurm-basic-commands/" class="md-nav__link">
<span class="md-ellipsis">
Slurm Basic Commands
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin6/slurm-general-docs/running-jobs/" class="md-nav__link">
<span class="md-ellipsis">
Running Slurm Scripts
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin6/slurm-general-docs/interactive-jobs/" class="md-nav__link">
<span class="md-ellipsis">
Running Interactive Jobs
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin6/slurm-general-docs/slurm-examples/" class="md-nav__link">
<span class="md-ellipsis">
Slurm Examples
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin6/slurm-general-docs/monitoring/" class="md-nav__link">
<span class="md-ellipsis">
Monitoring
</span>
</a>
</li>
</ul>
</nav>
</li>
<li class="md-nav__item md-nav__item--nested">
<input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_4_4">
<label class="md-nav__link" for="__nav_4_4" id="__nav_4_4_label" tabindex="0">
<span class="md-ellipsis">
GPU Cluster
</span>
<span class="md-nav__icon md-icon"></span>
</label>
<nav class="md-nav" data-md-level="2" aria-labelledby="__nav_4_4_label" aria-expanded="false">
<label class="md-nav__title" for="__nav_4_4">
<span class="md-nav__icon md-icon"></span>
GPU Cluster
</label>
<ul class="md-nav__list" data-md-scrollfix>
<li class="md-nav__item">
<a href="../../gmerlin6/cluster-introduction/" class="md-nav__link">
<span class="md-ellipsis">
Introduction
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../gmerlin6/hardware-and-software-description/" class="md-nav__link">
<span class="md-ellipsis">
Hardware And Software Description
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../gmerlin6/slurm-configuration/" class="md-nav__link">
<span class="md-ellipsis">
Slurm cluster 'gmerlin6'
</span>
</a>
</li>
</ul>
</nav>
</li>
<li class="md-nav__item md-nav__item--nested">
<input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_4_5">
<label class="md-nav__link" for="__nav_4_5" id="__nav_4_5_label" tabindex="0">
<span class="md-ellipsis">
Jupyterhub
</span>
<span class="md-nav__icon md-icon"></span>
</label>
<nav class="md-nav" data-md-level="2" aria-labelledby="__nav_4_5_label" aria-expanded="false">
<label class="md-nav__title" for="__nav_4_5">
<span class="md-nav__icon md-icon"></span>
Jupyterhub
</label>
<ul class="md-nav__list" data-md-scrollfix>
<li class="md-nav__item">
<a href="../../merlin6/jupyterhub/jupyterhub/" class="md-nav__link">
<span class="md-ellipsis">
Jupyterhub on Merlin
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin6/jupyterhub/jupyter-examples/" class="md-nav__link">
<span class="md-ellipsis">
Jupyter examples on merlin6
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin6/jupyterhub/jupytext/" class="md-nav__link">
<span class="md-ellipsis">
Jupytext - efficient editing
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin6/jupyterhub/jupyter-extensions/" class="md-nav__link">
<span class="md-ellipsis">
Jupyter Extensions
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin6/jupyterhub/jupyterlab/" class="md-nav__link">
<span class="md-ellipsis">
Jupyterlab User interface
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin6/jupyterhub/jupyterhub-trouble/" class="md-nav__link">
<span class="md-ellipsis">
Jupyterhub Troubleshooting
</span>
</a>
</li>
</ul>
</nav>
</li>
<li class="md-nav__item md-nav__item--nested">
<input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_4_6">
<label class="md-nav__link" for="__nav_4_6" id="__nav_4_6_label" tabindex="0">
<span class="md-ellipsis">
Software Support
</span>
<span class="md-nav__icon md-icon"></span>
</label>
<nav class="md-nav" data-md-level="2" aria-labelledby="__nav_4_6_label" aria-expanded="false">
<label class="md-nav__title" for="__nav_4_6">
<span class="md-nav__icon md-icon"></span>
Software Support
</label>
<ul class="md-nav__list" data-md-scrollfix>
<li class="md-nav__item">
<a href="../../merlin6/software-support/ansys/" class="md-nav__link">
<span class="md-ellipsis">
ANSYS
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin6/software-support/ansys-rsm/" class="md-nav__link">
<span class="md-ellipsis">
ANSYS - RSM
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin6/software-support/ansys-cfx/" class="md-nav__link">
<span class="md-ellipsis">
ANSYS - CFX
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin6/software-support/ansys-fluent/" class="md-nav__link">
<span class="md-ellipsis">
ANSYS - Fluent
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin6/software-support/ansys-mapdl/" class="md-nav__link">
<span class="md-ellipsis">
ANSYS - MAPDL
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin6/software-support/ansys-hfss/" class="md-nav__link">
<span class="md-ellipsis">
ANSYS HFSS (ElectroMagnetics)
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin6/software-support/gothic/" class="md-nav__link">
<span class="md-ellipsis">
GOTHIC
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin6/software-support/merlin-rmount/" class="md-nav__link">
<span class="md-ellipsis">
merlin_rmount
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin6/software-support/impi/" class="md-nav__link">
<span class="md-ellipsis">
Intel MPI Support
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin6/software-support/openmpi/" class="md-nav__link">
<span class="md-ellipsis">
OpenMPI
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin6/software-support/paraview/" class="md-nav__link">
<span class="md-ellipsis">
ParaView
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../merlin6/software-support/python/" class="md-nav__link">
<span class="md-ellipsis">
Python
</span>
</a>
</li>
</ul>
</nav>
</li>
</ul>
</nav>
</li>
<li class="md-nav__item md-nav__item--nested">
<input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_5">
<label class="md-nav__link" for="__nav_5" id="__nav_5_label" tabindex="0">
<span class="md-ellipsis">
MeG
</span>
<span class="md-nav__icon md-icon"></span>
</label>
<nav class="md-nav" data-md-level="1" aria-labelledby="__nav_5_label" aria-expanded="false">
<label class="md-nav__title" for="__nav_5">
<span class="md-nav__icon md-icon"></span>
MeG
</label>
<ul class="md-nav__list" data-md-scrollfix>
<li class="md-nav__item">
<a href="../../meg/introduction/" class="md-nav__link">
<span class="md-ellipsis">
The MEG local HPC cluster
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../meg/contact/" class="md-nav__link">
<span class="md-ellipsis">
Support
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../meg/migration-to-merlin7/" class="md-nav__link">
<span class="md-ellipsis">
Meg to Merlin7 Migration Guide
</span>
</a>
</li>
</ul>
</nav>
</li>
<li class="md-nav__item md-nav__item--nested">
<input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_6">
<label class="md-nav__link" for="__nav_6" id="__nav_6_label" tabindex="0">
<span class="md-ellipsis">
PSI@CSCS
</span>
<span class="md-nav__icon md-icon"></span>
</label>
<nav class="md-nav" data-md-level="1" aria-labelledby="__nav_6_label" aria-expanded="false">
<label class="md-nav__title" for="__nav_6">
<span class="md-nav__icon md-icon"></span>
PSI@CSCS
</label>
<ul class="md-nav__list" data-md-scrollfix>
<li class="md-nav__item">
<a href="../../cscs-userlab/introduction/" class="md-nav__link">
<span class="md-ellipsis">
PSI HPC@CSCS
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../cscs-userlab/transfer-data/" class="md-nav__link">
<span class="md-ellipsis">
Transferring Data
</span>
</a>
</li>
</ul>
</nav>
</li>
<li class="md-nav__item md-nav__item--nested">
<input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_7">
<label class="md-nav__link" for="__nav_7" id="__nav_7_label" tabindex="0">
<span class="md-ellipsis">
Support
</span>
<span class="md-nav__icon md-icon"></span>
</label>
<nav class="md-nav" data-md-level="1" aria-labelledby="__nav_7_label" aria-expanded="false">
<label class="md-nav__title" for="__nav_7">
<span class="md-nav__icon md-icon"></span>
Support
</label>
<ul class="md-nav__list" data-md-scrollfix>
<li class="md-nav__item">
<a href="../../support/introduction/" class="md-nav__link">
<span class="md-ellipsis">
Getting Support
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../support/faq/" class="md-nav__link">
<span class="md-ellipsis">
FAQ
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../support/known-problems/" class="md-nav__link">
<span class="md-ellipsis">
Known Problems
</span>
</a>
</li>
<li class="md-nav__item">
<a href="../../support/troubleshooting/" class="md-nav__link">
<span class="md-ellipsis">
Troubleshooting
</span>
</a>
</li>
</ul>
</nav>
</li>
</ul>
</nav>
</div>
</div>
</div>
<div class="md-sidebar md-sidebar--secondary" data-md-component="sidebar" data-md-type="toc">
<div class="md-sidebar__scrollwrap">
<div class="md-sidebar__inner">
<nav class="md-nav md-nav--secondary" aria-label="Table of contents">
<label class="md-nav__title" for="__toc">
<span class="md-nav__icon md-icon"></span>
Table of contents
</label>
<ul class="md-nav__list" data-md-component="toc" data-md-scrollfix>
<li class="md-nav__item">
<a href="#merlin5-cpu-nodes-definition" class="md-nav__link">
<span class="md-ellipsis">
Merlin5 CPU nodes definition
</span>
</a>
</li>
<li class="md-nav__item">
<a href="#running-jobs-in-the-merlin5-cluster" class="md-nav__link">
<span class="md-ellipsis">
Running jobs in the 'merlin5' cluster
</span>
</a>
<nav class="md-nav" aria-label="Running jobs in the 'merlin5' cluster">
<ul class="md-nav__list">
<li class="md-nav__item">
<a href="#merlin5-cpu-cluster" class="md-nav__link">
<span class="md-ellipsis">
Merlin5 CPU cluster
</span>
</a>
</li>
<li class="md-nav__item">
<a href="#merlin5-cpu-partitions" class="md-nav__link">
<span class="md-ellipsis">
Merlin5 CPU partitions
</span>
</a>
</li>
<li class="md-nav__item">
<a href="#merlin5-cpu-accounts" class="md-nav__link">
<span class="md-ellipsis">
Merlin5 CPU Accounts
</span>
</a>
</li>
<li class="md-nav__item">
<a href="#slurm-cpu-specific-options" class="md-nav__link">
<span class="md-ellipsis">
Slurm CPU specific options
</span>
</a>
</li>
</ul>
</nav>
</li>
<li class="md-nav__item">
<a href="#user-and-job-limits" class="md-nav__link">
<span class="md-ellipsis">
User and job limits
</span>
</a>
<nav class="md-nav" aria-label="User and job limits">
<ul class="md-nav__list">
<li class="md-nav__item">
<a href="#per-job-limits" class="md-nav__link">
<span class="md-ellipsis">
Per job limits
</span>
</a>
</li>
<li class="md-nav__item">
<a href="#per-user-limits-for-cpu-partitions" class="md-nav__link">
<span class="md-ellipsis">
Per user limits for CPU partitions
</span>
</a>
</li>
</ul>
</nav>
</li>
<li class="md-nav__item">
<a href="#advanced-slurm-configuration" class="md-nav__link">
<span class="md-ellipsis">
Advanced Slurm configuration
</span>
</a>
</li>
</ul>
</nav>
</div>
</div>
</div>
<div class="md-content" data-md-component="content">
<article class="md-content__inner md-typeset">
<a href="https://gitea.psi.ch/hpce/gitea-pages/_edit/master/docs/merlin5/slurm-configuration.md" title="Edit this page" class="md-content__button md-icon" rel="edit">
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M10 20H6V4h7v5h5v3.1l2-2V8l-6-6H6c-1.1 0-2 .9-2 2v16c0 1.1.9 2 2 2h4zm10.2-7c.1 0 .3.1.4.2l1.3 1.3c.2.2.2.6 0 .8l-1 1-2.1-2.1 1-1c.1-.1.2-.2.4-.2m0 3.9L14.1 23H12v-2.1l6.1-6.1z"></path></svg>
</a>
<h1 id="slurm-configuration">Slurm Configuration<a class="headerlink" href="#slurm-configuration" title="Permanent link"></a></h1>
<p>This documentation shows basic Slurm configuration and options needed to run jobs in the Merlin5 cluster.</p>
<p>The Merlin5 cluster is an old cluster with old hardware which is maintained in a best effort for increasing the CPU power of the Merlin cluster.</p>
<h2 id="merlin5-cpu-nodes-definition">Merlin5 CPU nodes definition<a class="headerlink" href="#merlin5-cpu-nodes-definition" title="Permanent link"></a></h2>
<p>The following table show default and maximum resources that can be used per node:</p>
<table>
<thead>
<tr>
<th style="text-align: center;">Nodes</th>
<th style="text-align: right;">Def.#CPUs</th>
<th style="text-align: center;">Max.#CPUs</th>
<th style="text-align: center;">#Threads</th>
<th style="text-align: center;">Max.Mem/Node</th>
<th style="text-align: center;">Max.Swap</th>
</tr>
</thead>
<tbody>
<tr>
<td style="text-align: center;">merlin-c-[18-30]</td>
<td style="text-align: right;">1 core</td>
<td style="text-align: center;">16 cores</td>
<td style="text-align: center;">1</td>
<td style="text-align: center;">60000</td>
<td style="text-align: center;">10000</td>
</tr>
<tr>
<td style="text-align: center;">merlin-c-[31-32]</td>
<td style="text-align: right;">1 core</td>
<td style="text-align: center;">16 cores</td>
<td style="text-align: center;">1</td>
<td style="text-align: center;">124000</td>
<td style="text-align: center;">10000</td>
</tr>
<tr>
<td style="text-align: center;">merlin-c-[33-45]</td>
<td style="text-align: right;">1 core</td>
<td style="text-align: center;">16 cores</td>
<td style="text-align: center;">1</td>
<td style="text-align: center;">60000</td>
<td style="text-align: center;">10000</td>
</tr>
<tr>
<td style="text-align: center;">merlin-c-[46-47]</td>
<td style="text-align: right;">1 core</td>
<td style="text-align: center;">16 cores</td>
<td style="text-align: center;">1</td>
<td style="text-align: center;">124000</td>
<td style="text-align: center;">10000</td>
</tr>
</tbody>
</table>
<p>There is one <em>main difference between the Merlin5 and Merlin6 clusters</em>: Merlin5 is keeping an old configuration which does not
consider the memory as a <em>consumable resource</em>. Hence, users can <em>oversubscribe</em> memory. This might trigger some side-effects, but
this legacy configuration has been kept to ensure that old jobs can keep running in the same way they did a few years ago.
If you know that this might be a problem for you, please, always use Merlin6 instead.</p>
<h2 id="running-jobs-in-the-merlin5-cluster">Running jobs in the 'merlin5' cluster<a class="headerlink" href="#running-jobs-in-the-merlin5-cluster" title="Permanent link"></a></h2>
<p>In this chapter we will cover basic settings that users need to specify in order to run jobs in the Merlin5 CPU cluster.</p>
<h3 id="merlin5-cpu-cluster">Merlin5 CPU cluster<a class="headerlink" href="#merlin5-cpu-cluster" title="Permanent link"></a></h3>
<p>To run jobs in the <strong><code>merlin5</code></strong> cluster users <strong>must</strong> specify the cluster name in Slurm:</p>
<div class="language-bash highlight"><span class="filename">Bash</span><pre><span></span><code><span id="__span-0-1"><a id="__codelineno-0-1" name="__codelineno-0-1" href="#__codelineno-0-1"></a><span class="c1">#SBATCH --cluster=merlin5</span>
</span></code></pre></div>
<h3 id="merlin5-cpu-partitions">Merlin5 CPU partitions<a class="headerlink" href="#merlin5-cpu-partitions" title="Permanent link"></a></h3>
<p>Users might need to specify the Slurm partition. If no partition is specified, it will default to <strong><code>merlin</code></strong>:</p>
<div class="language-bash highlight"><span class="filename">Bash</span><pre><span></span><code><span id="__span-1-1"><a id="__codelineno-1-1" name="__codelineno-1-1" href="#__codelineno-1-1"></a><span class="c1">#SBATCH --partition=&lt;partition_name&gt; # Possible &lt;partition_name&gt; values: merlin, merlin-long:</span>
</span></code></pre></div>
<p>The table below resumes shows all possible partitions available to users:</p>
<table>
<thead>
<tr>
<th style="text-align: center;">CPU Partition</th>
<th style="text-align: center;">Default Time</th>
<th style="text-align: center;">Max Time</th>
<th style="text-align: center;">Max Nodes</th>
<th style="text-align: center;">PriorityJobFactor*</th>
<th style="text-align: center;">PriorityTier**</th>
</tr>
</thead>
<tbody>
<tr>
<td style="text-align: center;"><strong><u>merlin</u></strong></td>
<td style="text-align: center;">5 days</td>
<td style="text-align: center;">1 week</td>
<td style="text-align: center;">All nodes</td>
<td style="text-align: center;">500</td>
<td style="text-align: center;">1</td>
</tr>
<tr>
<td style="text-align: center;"><strong>merlin-long</strong></td>
<td style="text-align: center;">5 days</td>
<td style="text-align: center;">21 days</td>
<td style="text-align: center;">4</td>
<td style="text-align: center;">1</td>
<td style="text-align: center;">1</td>
</tr>
</tbody>
</table>
<p><strong>*</strong>The <strong>PriorityJobFactor</strong> value will be added to the job priority (<em>PARTITION</em> column in <code>sprio -l</code> ). In other words, jobs sent to higher priority
partitions will usually run first (however, other factors such like <strong>job age</strong> or mainly <strong>fair share</strong> might affect to that decision). For the GPU
partitions, Slurm will also attempt first to allocate jobs on partitions with higher priority over partitions with lesser priority.</p>
<p><strong>**</strong>Jobs submitted to a partition with a higher <strong>PriorityTier</strong> value will be dispatched before pending jobs in partition with lower <em>PriorityTier</em> value
and, if possible, they will preempt running jobs from partitions with lower <em>PriorityTier</em> values.</p>
<p>The <strong><code>merlin-long</code></strong> partition <strong>is limited to 4 nodes</strong>, as it might contain jobs running for up to 21 days.</p>
<h3 id="merlin5-cpu-accounts">Merlin5 CPU Accounts<a class="headerlink" href="#merlin5-cpu-accounts" title="Permanent link"></a></h3>
<p>Users need to ensure that the public <strong><code>merlin</code></strong> account is specified. No specifying account options would default to this account.
This is mostly needed by users which have multiple Slurm accounts, which may define by mistake a different account.</p>
<div class="language-bash highlight"><span class="filename">Bash</span><pre><span></span><code><span id="__span-2-1"><a id="__codelineno-2-1" name="__codelineno-2-1" href="#__codelineno-2-1"></a><span class="c1">#SBATCH --account=merlin # Possible values: merlin</span>
</span></code></pre></div>
<h3 id="slurm-cpu-specific-options">Slurm CPU specific options<a class="headerlink" href="#slurm-cpu-specific-options" title="Permanent link"></a></h3>
<p>Some options are available when using CPUs. These are detailed here.</p>
<p>Alternative Slurm options for CPU based jobs are available. Please refer to the <strong>man</strong> pages
for each Slurm command for further information about it (<code>man salloc</code>, <code>man sbatch</code>, <code>man srun</code>).
Below are listed the most common settings:</p>
<div class="language-bash highlight"><span class="filename">Bash</span><pre><span></span><code><span id="__span-3-1"><a id="__codelineno-3-1" name="__codelineno-3-1" href="#__codelineno-3-1"></a><span class="c1">#SBATCH --ntasks=&lt;ntasks&gt;</span>
</span><span id="__span-3-2"><a id="__codelineno-3-2" name="__codelineno-3-2" href="#__codelineno-3-2"></a><span class="c1">#SBATCH --ntasks-per-core=&lt;ntasks&gt;</span>
</span><span id="__span-3-3"><a id="__codelineno-3-3" name="__codelineno-3-3" href="#__codelineno-3-3"></a><span class="c1">#SBATCH --ntasks-per-socket=&lt;ntasks&gt;</span>
</span><span id="__span-3-4"><a id="__codelineno-3-4" name="__codelineno-3-4" href="#__codelineno-3-4"></a><span class="c1">#SBATCH --ntasks-per-node=&lt;ntasks&gt;</span>
</span><span id="__span-3-5"><a id="__codelineno-3-5" name="__codelineno-3-5" href="#__codelineno-3-5"></a><span class="c1">#SBATCH --mem=&lt;size[units]&gt;</span>
</span><span id="__span-3-6"><a id="__codelineno-3-6" name="__codelineno-3-6" href="#__codelineno-3-6"></a><span class="c1">#SBATCH --mem-per-cpu=&lt;size[units]&gt;</span>
</span><span id="__span-3-7"><a id="__codelineno-3-7" name="__codelineno-3-7" href="#__codelineno-3-7"></a><span class="c1">#SBATCH --cpus-per-task=&lt;ncpus&gt;</span>
</span><span id="__span-3-8"><a id="__codelineno-3-8" name="__codelineno-3-8" href="#__codelineno-3-8"></a><span class="c1">#SBATCH --cpu-bind=[{quiet,verbose},]&lt;type&gt; # only for 'srun' command</span>
</span></code></pre></div>
<p>Notice that in <strong>Merlin5</strong> no hyper-threading is available (while in <strong>Merlin6</strong> it is).
Hence, in <strong>Merlin5</strong> there is not need to specify <code>--hint</code> hyper-threading related options.</p>
<h2 id="user-and-job-limits">User and job limits<a class="headerlink" href="#user-and-job-limits" title="Permanent link"></a></h2>
<p>In the CPU cluster we provide some limits which basically apply to jobs and users. The idea behind this is to ensure a fair usage of the resources and to
avoid overabuse of the resources from a single user or job. However, applying limits might affect the overall usage efficiency of the cluster (in example,
pending jobs from a single user while having many idle nodes due to low overall activity is something that can be seen when user limits are applied).
In the same way, these limits can be also used to improve the efficiency of the cluster (in example, without any job size limits, a job requesting all
resources from the batch system would drain the entire cluster for fitting the job, which is undesirable).</p>
<p>Hence, there is a need of setting up wise limits and to ensure that there is a fair usage of the resources, by trying to optimize the overall efficiency
of the cluster while allowing jobs of different nature and sizes (it is, <strong>single core</strong> based <strong>vs parallel jobs</strong> of different sizes) to run.</p>
<p>In the <strong><code>merlin5</code></strong> cluster, as not many users are running on it, these limits are wider than the ones set in the <strong><code>merlin6</code></strong> and <strong><code>gmerlin6</code></strong> clusters.</p>
<h3 id="per-job-limits">Per job limits<a class="headerlink" href="#per-job-limits" title="Permanent link"></a></h3>
<p>These are limits which apply to a single job. In other words, there is a maximum of resources a single job can use. These limits are described in the table below,
with the format <code>SlurmQoS(limits)</code> (<code>SlurmQoS</code> can be listed from the <code>sacctmgr show qos</code> command):</p>
<table>
<thead>
<tr>
<th style="text-align: center;">Partition</th>
<th style="text-align: center;">Mon-Sun 0h-24h</th>
<th style="text-align: center;">Other limits</th>
</tr>
</thead>
<tbody>
<tr>
<td style="text-align: center;"><strong>merlin</strong></td>
<td style="text-align: center;">merlin5(cpu=384)</td>
<td style="text-align: center;">None</td>
</tr>
<tr>
<td style="text-align: center;"><strong>merlin-long</strong></td>
<td style="text-align: center;">merlin5(cpu=384)</td>
<td style="text-align: center;">Max. 4 nodes</td>
</tr>
</tbody>
</table>
<p>By default, by QoS limits, a job can not use more than 384 cores (max CPU per job).
However, for the <code>merlin-long</code>, this is even more restricted: there is an extra limit of 4 dedicated nodes for this partion. This is defined
at the partition level, and will overwrite any QoS limit as long as this is more restrictive.</p>
<h3 id="per-user-limits-for-cpu-partitions">Per user limits for CPU partitions<a class="headerlink" href="#per-user-limits-for-cpu-partitions" title="Permanent link"></a></h3>
<p>No user limits apply by QoS. For the <strong><code>merlin</code></strong> partition, a single user could fill the whole batch system with jobs (however, the restriction is at the job size, as explained above). For the <strong><code>merlin-limit</code></strong> partition, the 4 node limitation still applies.</p>
<h2 id="advanced-slurm-configuration">Advanced Slurm configuration<a class="headerlink" href="#advanced-slurm-configuration" title="Permanent link"></a></h2>
<p>Clusters at PSI use the <a href="http://slurm.schedmd.com/">Slurm Workload Manager</a> as the batch system technology for managing and scheduling jobs.
Slurm has been installed in a <strong>multi-clustered</strong> configuration, allowing to integrate multiple clusters in the same batch system.</p>
<p>For understanding the Slurm configuration setup in the cluster, sometimes may be useful to check the following files:</p>
<ul>
<li><code>/etc/slurm/slurm.conf</code> - can be found in the login nodes and computing nodes.</li>
<li><code>/etc/slurm/gres.conf</code> - can be found in the GPU nodes, is also propgated to login nodes and computing nodes for user read access.</li>
<li><code>/etc/slurm/cgroup.conf</code> - can be found in the computing nodes, is also propagated to login nodes for user read access.</li>
</ul>
<p>The previous configuration files which can be found in the login nodes, correspond exclusively to the <strong>merlin6</strong> cluster configuration files.
Configuration files for the old <strong>merlin5</strong> cluster or for the <strong>gmerlin6</strong> cluster must be checked directly on any of the <strong>merlin5</strong> or <strong>gmerlin6</strong> computing nodes (in example, by login in to one of the nodes while a job or an active allocation is running).</p>
</article>
</div>
<script>var target=document.getElementById(location.hash.slice(1));target&&target.name&&(target.checked=target.name.startsWith("__tabbed_"))</script>
</div>
</main>
<footer class="md-footer">
<div class="md-footer-meta md-typeset">
<div class="md-footer-meta__inner md-grid">
<div class="md-copyright">
<div class="md-copyright__highlight">
Copyright © 2025 HPC and Emerging Technologies Group/CSD @ Paul Scherrer Institut
</div>
Made with
<a href="https://squidfunk.github.io/mkdocs-material/" target="_blank" rel="noopener">
Material for MkDocs
</a>
</div>
</div>
</div>
</footer>
</div>
<div class="md-dialog" data-md-component="dialog">
<div class="md-dialog__inner md-typeset"></div>
</div>
<script id="__config" type="application/json">{"annotate": null, "base": "../..", "features": ["navigation.instant", "navigation.tabs", "navigation.tabs.sticky", "navigation.sections", "navigation.indexes", "toc.follow", "content.action.edit"], "search": "../../assets/javascripts/workers/search.7a47a382.min.js", "tags": null, "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version": "Select version"}, "version": null}</script>
<script src="../../assets/javascripts/bundle.e71a0d61.min.js"></script>
<script id="init-glightbox">const lightbox = GLightbox({"touchNavigation": true, "loop": false, "zoomable": true, "draggable": true, "openEffect": "zoom", "closeEffect": "zoom", "slideEffect": "slide"});
document$.subscribe(()=>{ lightbox.reload(); });
</script></body></html>
Reference in New Issue View Git Blame Copy Permalink