vibed changes #1

docs/merlin6/jupyterhub/jupyter-extensions.md

@@ -23,7 +23,7 @@ Especially the following extensions make working with larger notebooks easier
   to add and update a TOC at the head of the document.
 * **Collapsible Headings**: allows you to fold all the cells below a heading
 
-It may also be interesting for you to explore the [Jupytext](jupytext.html) server extension.
+It may also be interesting for you to explore the [Jupytext](jupytext.md) server extension.
 
 ## Variable Inspector
 

docs/merlin6/jupyterhub/jupyterhub-trouble.md

@@ -55,7 +55,7 @@ Inside of a Merlin6 terminal shell, you can run the standard commands like
 ### Your user environment is not among the kernels offered for choice
 
 Refer to our documentation about [using your own custom made
-environments with jupyterhub](/merlin6/jupyterhub.html).
+environments with jupyterhub](jupyterhub.md).
 
 ### Cannot save notebook - *xsrf argument missing*
 

docs/merlin6/jupyterhub/jupyterhub.md

@@ -36,7 +36,7 @@ recalculate the notebook cells with this new kernel.
 
 These environments are also available for standard work in a shell session. You
 can activate an environment in a normal merlin terminal session by using the
-`module` (q.v. [using Pmodules](using-modules.html)) command to load anaconda
+`module` (q.v. [using Pmodules](../../how-to-use-merlin/using-modules.md)) command to load anaconda
 python, and from there using the `conda` command to switch to the desired
 environment:
 
@@ -79,7 +79,7 @@ queue. Additional customization can be implemented using the *'Optional user
 defined line to be added to the batch launcher script'* option. This line is
 added to the submission script at the end of other `#SBATCH` lines. Parameters can
 be passed to SLURM by starting the line with `#SBATCH`, like in [Running Slurm
-Scripts](/merlin6/running-jobs.html). Some ideas:
+Scripts](../../slurm-general-docs/running-jobs.md). Some ideas:
 
 ### Request additional memory