Also removing relative_url filters to work around incorrect baseurl

This could also be reverted if baseurl is correctly deployed.

_includes/sidebar.html

@@ -16,12 +16,12 @@
           {% if folderitem.external_url %}
           <li><a title="{{folderitem.title}}" href="{{folderitem.external_url}}" target="_blank" rel="noopener">{{folderitem.title}}</a></li>
           {% elsif page.url contains folderitem.url %}
-          <li class="active"><a title="{{folderitem.title}}" href="{{folderitem.url | relative_url}}">{{folderitem.title}}</a></li>
+          <li class="active"><a title="{{folderitem.title}}" href="{{folderitem.url}}">{{folderitem.title}}</a></li>
           {% elsif folderitem.type == "empty" %}
-          <li><a title="{{folderitem.title}}" href="{{folderitem.url | relative_url}}">{{folderitem.title}}</a></li>
+          <li><a title="{{folderitem.title}}" href="{{folderitem.url}}">{{folderitem.title}}</a></li>
 
           {% else %}
-          <li><a title="{{folderitem.title}}" href="{{folderitem.url | relative_url}}">{{folderitem.title}}</a></li>
+          <li><a title="{{folderitem.title}}" href="{{folderitem.url}}">{{folderitem.title}}</a></li>
           {% endif %}
           {% for subfolders in folderitem.subfolders %}
           {% if subfolders.output == nil or subfolders.output contains "web" %}
@@ -33,9 +33,9 @@
                   {% if subfolderitem.external_url %}
                   <li><a title="{{subfolderitem.title}}" href="{{subfolderitem.external_url}}" target="_blank" rel="noopener">{{subfolderitem.title}}</a></li>
                   {% elsif page.url == subfolderitem.url %}
-                  <li class="active"><a title="{{subfolderitem.title}}" href="{{subfolderitem.url | relative_url}}">{{subfolderitem.title}}</a></li>
+                  <li class="active"><a title="{{subfolderitem.title}}" href="{{subfolderitem.url}}">{{subfolderitem.title}}</a></li>
                   {% else %}
-                  <li><a title="{{subfolderitem.title}}" href="{{subfolderitem.url | relative_url }}">{{subfolderitem.title}}</a></li>
+                  <li><a title="{{subfolderitem.title}}" href="{{subfolderitem.url }}">{{subfolderitem.title}}</a></li>
                   {% endif %}
                   {% endif %}
                   {% endfor %}

_includes/topnav.html

@@ -8,7 +8,7 @@
                 <span class="icon-bar"></span>
                 <span class="icon-bar"></span>
             </button>
-            <a class="fa fa-home fa-lg navbar-brand" href="{{ "/index.html" | relative_url }}">&nbsp;<span class="projectTitle"> {{site.topnav_title}}</span></a>
+            <a class="fa fa-home fa-lg navbar-brand" href="{{ "/index.html" }}">&nbsp;<span class="projectTitle"> {{site.topnav_title}}</span></a>
         </div>
         <div class="collapse navbar-collapse" id="bs-example-navbar-collapse-1">
             <ul class="nav navbar-nav navbar-right">
@@ -24,9 +24,9 @@
                 {% if item.external_url %}
                 <li><a href="{{item.external_url}}" target="_blank" rel="noopener">{{item.title}}</a></li>
                 {% elsif page.url contains item.url %}
-                <li class="active"><a href="{{item.url | relative_url }}">{{item.title}}</a></li>
+                <li class="active"><a href="{{item.url }}">{{item.title}}</a></li>
                 {% else %}
-                <li><a href="{{item.url | relative_url}}">{{item.title}}</a></li>
+                <li><a href="{{item.url}}">{{item.title}}</a></li>
                 {% endif %}
                 {% endfor %}
                 {% endfor %}
@@ -41,9 +41,9 @@
                         {% if folderitem.external_url %}
                         <li><a href="{{folderitem.external_url}}" target="_blank" rel="noopener">{{folderitem.title}}</a></li>
                         {% elsif page.url contains folderitem.url %}
-                        <li class="dropdownActive"><a href="{{folderitem.url | relative_url}}">{{folderitem.title}}</a></li>
+                        <li class="dropdownActive"><a href="{{folderitem.url}}">{{folderitem.title}}</a></li>
                         {% else %}
-                        <li><a href="{{folderitem.url | relative_url }}">{{folderitem.title}}</a></li>
+                        <li><a href="{{folderitem.url }}">{{folderitem.title}}</a></li>
                         {% endif %}
                         {% endfor %}
                     </ul>

pages/merlin6/introduction.md

@@ -25,4 +25,4 @@ of GPU-based resources which are mostly used by the BIO experiments.
 
 ## Merlin6
 
-![Merlin6 Architecture]({{ "/images/merlinschema3.png" | relative_url }})
+![Merlin6 Architecture]({{ "/images/merlinschema3.png" }})