gsell
542daf7fc2
- define dummy MPI macros to be used in serial compilation, closing #10 - cleanup some "unused variable" warnings - fix some format warnings, using C99 format macros
75 lines
2.4 KiB
C
75 lines
2.4 KiB
C
/*
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Copyright (c) 2006-2015, The Regents of the University of California,
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through Lawrence Berkeley National Laboratory (subject to receipt of any
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required approvals from the U.S. Dept. of Energy) and the Paul Scherrer
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Institut (Switzerland). All rights reserved.
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License: see file COPYING in top level of source distribution.
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*/
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#include "H5hut.h"
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#include "examples.h"
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#include <stdlib.h>
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// name of input file
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const char* fname = "example_strided.h5";
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// H5hut verbosity level
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const h5_int64_t h5_verbosity = H5_VERBOSE_DEFAULT;
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//const h5_int64_t h5_verbosity = H5_DEBUG_ALL;
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int
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main (
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int argc, char* argv[]
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){
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// initialize MPI & H5hut
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MPI_Init (&argc, &argv);
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MPI_Comm comm = MPI_COMM_WORLD;
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int comm_size = 1;
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MPI_Comm_size (comm, &comm_size);
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int comm_rank = 0;
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MPI_Comm_rank (comm, &comm_rank);
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H5AbortOnError ();
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H5SetVerbosityLevel (h5_verbosity);
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// open file and go to first step
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h5_file_t file = H5OpenFile (fname, H5_O_RDONLY, H5_PROP_DEFAULT);
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H5SetStep (file, 0);
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// compute number of particles this process has to read
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h5_ssize_t num_particles_total = H5PartGetNumParticles (file);
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h5_ssize_t num_particles = num_particles_total / comm_size;
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if (comm_rank+1 == comm_size)
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num_particles += num_particles_total % comm_size;
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printf ("[proc %d]: particles in view: %lld\n", comm_rank, (long long)num_particles);
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printf ("[proc %d]: total number of particles: %lld\n",
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comm_rank, (long long unsigned)num_particles_total);
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// set number of particles and memory stride
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H5PartSetNumParticlesStrided (file, num_particles, 6);
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// read data
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h5_float64_t* data = calloc (6*num_particles, sizeof (*data));
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H5PartReadDataFloat64 (file, "x", data+0);
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H5PartReadDataFloat64 (file, "y", data+1);
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H5PartReadDataFloat64 (file, "z", data+2);
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H5PartReadDataFloat64 (file, "px", data+3);
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H5PartReadDataFloat64 (file, "py", data+4);
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H5PartReadDataFloat64 (file, "pz", data+5);
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// print dataset "x"
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for (int i = 0; i < num_particles*6; i+=6) {
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printf ("[proc %d]: local index = %d, value = %6.3f\n",
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comm_rank, i, data[i]);
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}
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// cleanup
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free (data);
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H5CloseFile (file);
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MPI_Finalize ();
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return 0;
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}
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