#include #include #include #include "H5Part.h" #include "H5Block.h" #include static h5part_int64_t calc_index_KJI ( h5part_int64_t i, h5part_int64_t x_extent, h5part_int64_t j, h5part_int64_t y_extent, h5part_int64_t k, h5part_int64_t z_extent ) { return i + j*x_extent + k*x_extent*y_extent; } static int _define_3dlayout ( H5PartFile *f, h5part_int64_t *dims, int myproc ) { h5part_int64_t i_start = 0; h5part_int64_t i_end = 63; h5part_int64_t j_start = 0; h5part_int64_t j_end = 63; h5part_int64_t k_start = 64 * myproc; h5part_int64_t k_end = k_start + 63; herr_t herr = H5BlockDefine3DFieldLayout ( f, i_start, i_end, j_start, j_end, k_start, k_end ); if ( herr < 0 ) return -1; dims[0] = i_end - i_start + 1; dims[1] = j_end - j_start + 1; dims[2] = k_end - k_start + 1; return 0; } static int _read3d_scalar ( H5PartFile *f, const char *name, h5part_int64_t *dims, int myproc ) { h5part_float64_t *data; int i, j, k, idx; data = (h5part_float64_t*) malloc ( dims[0] * dims[1] * dims[2] * sizeof(*data) ); herr_t herr = H5Block3dReadScalarField ( f, name, data ); if ( herr < 0 ) return -1; for ( i = 0; i < dims[0]; i++ ) { for ( j = 0; j < dims[1]; j++ ) { printf ("(%d,%d,0): ", i, j ); for ( k = 0; k < dims[2]; k++ ) { idx = calc_index_KJI ( i, dims[0], j, dims[1], k, dims[2] ); printf ( "%.0f ", *(data+idx) ); } printf ( "\n" ); } } return 0; } static int _read3d_3d_vector ( H5PartFile *f, const char *name, h5part_int64_t *dims ) { h5part_float64_t *x_data; h5part_float64_t *y_data; h5part_float64_t *z_data; x_data = (h5part_float64_t*) malloc ( dims[0] * dims[1] * dims[2] * sizeof(*x_data) ); y_data = (h5part_float64_t*) malloc ( dims[0] * dims[1] * dims[2] * sizeof(*y_data) ); z_data = (h5part_float64_t*) malloc ( dims[0] * dims[1] * dims[2] * sizeof(*z_data) ); herr_t herr = H5Block3dRead3dVectorField ( f, name, x_data, y_data, z_data ); if ( herr < 0 ) return -1; return 0; } static int _read_field ( H5PartFile *f, h5part_int64_t idx, int myproc ) { char name[256]; h5part_int64_t grid_rank; h5part_int64_t grid_dims[16]; h5part_int64_t field_dims; herr_t herr = H5BlockGetFieldInfo ( f, idx, name, sizeof(name), &grid_rank, grid_dims, &field_dims ); if ( herr < 0 ) return -1; printf ( "Field #%lld has name \"%s\"\n", (long long) idx, name ); switch ( grid_rank ) { case 3: printf ( "\tGrid dimension of \"%s\" is 3\n", name ); printf ( "\tThe dimesion sizes are: (%lld, %lld, %lld)\n", (long long)grid_dims[0], (long long)grid_dims[1], (long long)grid_dims[2] ); if ( field_dims == 1 ) { printf ( "\tField data are scalar\n" ); } else { printf ( "\tField data are %lld vectors\n", (long long)field_dims ); } _define_3dlayout ( f, grid_dims, myproc ); if ( field_dims == 1 ) { _read3d_scalar ( f, name, grid_dims, myproc ); } else if ( field_dims == 3 ) { _read3d_3d_vector ( f, name, grid_dims ); } break; default: printf ( "unknown grid rank %lld!!!\n", (long long)grid_rank ); } return 0; } static int ReadFile ( const char *fn, MPI_Comm comm, int myproc ) { H5PartFile *f; h5part_int64_t herr; h5part_int64_t timestep; h5part_int64_t timesteps; h5part_int64_t i, n; printf ("Opening file %s for reading\n", fn ); f = H5PartOpenFileParallel ( fn, H5PART_READ, comm ); if ( f == NULL ) return -1; timesteps = H5PartGetNumSteps ( f ); printf ( "Timesteps = %lld\n", (long long)timesteps ); printf ( "\n===============================\n" ); for ( timestep = 0; timestep < timesteps; timestep++) { herr = H5PartSetStep ( f, timestep ); if ( herr < 0 ) return -1; n = H5BlockGetNumFields ( f ); if ( n < 0 ) return -1; printf ( "Number of fields in time-step #%lld: %lld \n", (long long)timestep, (long long)n ); for ( i = 0; i < n; i++ ) { _read_field ( f, i, myproc ); } } return H5PartCloseFile ( f ); } int main ( int argc, char **argv ) { char *fn = "blockfile1.h5"; int myproc; int nprocs; H5PartSetVerbosityLevel ( 10 ); MPI_Comm comm=MPI_COMM_WORLD; MPI_Init(&argc,&argv); MPI_Comm_size(comm,&nprocs); MPI_Comm_rank(comm,&myproc); if ( ReadFile ( fn, comm, 1 ) < 0 ){ printf ("Failed to read file %s\n", fn ); exit ( 2 ); } return 0; }