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changesets -3740 merged from sandbox

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This commit is contained in:
gsell
2011-08-18 16:19:28 +00:00
parent aacd90c1cc
commit 8860a72e65
100 changed files with 6301 additions and 6174 deletions
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src/include/h5core/h5_core.h
+74 -152
View File
@@ -21,181 +21,103 @@ extern "C" {
extern char* h5_rfmts[];
#define __FUNC_ENTER(type) \
h5_call_stack_push (__func__,e_##type); \
//////////////////////////////////////////////////////////////////////////////
// function enter macro
#if defined(NDEBUG)
#define __API_ENTER(type, mask, fmt, ...) \
h5_call_stack_init (__func__,e_##type); \
type ret_value = (type)H5_ERR;
#if defined(NDEBUG)
#define __FUNC_ARGS0(mask)
#define __FUNC_ARGS1(fmt, a1, mask)
#define __FUNC_ARGS2(fmt, a1, a2, mask)
#define __FUNC_ARGS3(fmt, a1, a2, a3, mask)
#define __FUNC_ARGS4(fmt, a1, a2, a3, a4, mask)
#define __FUNC_ARGS5(fmt, a1, a2, a3, a4, a5, mask)
#define __FUNC_ARGS6(fmt, a1, a2, a3, a4, a5, a6, mask)
#define __FUNC_ARGS7(fmt, a1, a2, a3, a4, a5, a6, a7, mask)
#define __FUNC_ARGS8(fmt, a1, a2, a3, a4, a5, a6, a7, a8, mask)
#define __FUNC_ENTER(type, mask, fmt, ...) \
type ret_value = (type)H5_ERR;
#else
#define __FUNC_ARGS0(mask) \
if (h5_debug_level & mask ) { \
h5_debug ("(void)"); \
#define __API_ENTER(type, mask, fmt, ...) \
h5_call_stack_push (__func__,e_##type); \
type ret_value = (type)H5_ERR; \
if (h5_debug_level & mask ) { \
h5_debug ("(" fmt ")", __VA_ARGS__); \
}
#define __FUNC_ARGS1(fmt, a1, mask) \
if (h5_debug_level & mask ) { \
h5_debug ("(" fmt ")", a1); \
}
#define __FUNC_ENTER(type, mask, fmt, ...) \
type ret_value = (type)H5_ERR; \
if (h5_debug_level & mask ) { \
h5_call_stack_push (__func__,e_##type); \
h5_debug ("(" fmt ")", __VA_ARGS__); \
} \
#define __FUNC_ARGS2(fmt, a1, a2, mask) \
if (h5_debug_level & mask ) { \
h5_debug ("(" fmt ")", a1, a2); \
}
#define __FUNC_ARGS3(fmt, a1, a2, a3, mask) \
if (h5_debug_level & mask ) { \
h5_debug ("(" fmt ")", a1, a2, a3); \
}
#define __FUNC_ARGS4(fmt, a1, a2, a3, a4, mask) \
if (h5_debug_level & mask ) { \
h5_debug ("(" fmt ")", a1, a2, a3, a4); \
}
#define __FUNC_ARGS5(fmt, a1, a2, a3, a4, a5, mask) \
if (h5_debug_level & mask ) { \
h5_debug ("(" fmt ")", a1, a2, a3, a4, a5); \
}
#define __FUNC_ARGS6(fmt, a1, a2, a3, a4, a5, a6, mask) \
if (h5_debug_level & mask ) { \
h5_debug ("(" fmt ")", a1, a2, a3, a4, a5, a6); \
}
#define __FUNC_ARGS7(fmt, a1, a2, a3, a4, a5, a6, a7, mask) \
if (h5_debug_level & mask ) { \
h5_debug ("(" fmt ")", a1, a2, a3, a4, a5, a6, a7); \
}
#define __FUNC_ARGS8(fmt, a1, a2, a3, a4, a5, a6, a7, a8, mask) \
if (h5_debug_level & mask ) { \
h5_debug ("(" fmt ")", a1, a2, a3, a4, a5, a6, a7, a8); \
}
#endif
//
//////////////////////////////////////////////////////////////////////////////
#define __FUNC_ENTER0(type, mask) \
__FUNC_ENTER(type); \
__FUNC_ARGS0(mask);
#define __API_LEAVE(expr) { \
ret_value = expr; \
goto done; \
}
#define __FUNC_ENTER1(type, fmt, a1, mask) \
__FUNC_ENTER(type); \
__FUNC_ARGS1(fmt, a1, mask);
#define __FUNC_ENTER2(type, fmt, a1, a2, mask) \
__FUNC_ENTER(type); \
__FUNC_ARGS2(fmt, a1, a2, mask);
#define __FUNC_ENTER3(type, fmt, a1, a2, a3, mask) \
__FUNC_ENTER(type); \
__FUNC_ARGS3(fmt, a1, a2, a3, mask);
#define __FUNC_ENTER4(type, fmt, a1, a2, a3, a4, mask) \
__FUNC_ENTER(type); \
__FUNC_ARGS4(fmt, a1, a2, a3, a4, mask);
#define __FUNC_ENTER5(type, fmt, a1, a2, a3, a4, a5, mask) \
__FUNC_ENTER(type); \
__FUNC_ARGS5(fmt, a1, a2, a3, a4, a5, mask);
#define __FUNC_ENTER6(type, fmt, a1, a2, a3, a4, a5, a6, mask) \
__FUNC_ENTER(type); \
__FUNC_ARGS6(fmt, a1, a2, a3, a4, a5, a6, mask);
#define __FUNC_ENTER7(type, fmt, a1, a2, a3, a4, a5, a6, a7, mask) \
__FUNC_ENTER(type); \
__FUNC_ARGS7(fmt, a1, a2, a3, a4, a5, a6, a7, mask);
#define __FUNC_ENTER8(type, fmt, a1, a2, a3, a4, a5, a6, a7, a8, mask) \
__FUNC_ENTER(type); \
__FUNC_ARGS8(fmt, a1, a2, a3, a4, a5, a6, a7, a8, mask);
#define __FUNC_LEAVE(expr) { \
ret_value = expr; \
goto done; \
#define __FUNC_LEAVE(expr) { \
ret_value = expr; \
goto done; \
}
//////////////////////////////////////////////////////////////////////////////
// function return macro
#if defined(NDEBUG)
#define __FUNC_RETURN(expr, mask) \
ret_value = expr; \
goto done; \
done: \
h5_call_stack_pop(); \
#define __API_RETURN(expr, mask) \
ret_value = expr; \
goto done; \
done: \
h5_call_stack_reset (); \
return ret_value;
#define __FUNC_RETURN(expr, mask) \
ret_value = expr; \
goto done; \
done: \
return ret_value;
#else
#define __FUNC_RETURN(expr, mask) \
ret_value = expr; \
goto done; \
done: \
if (h5_debug_level & mask ) { \
char fmt[256]; \
snprintf (fmt, sizeof(fmt), "return: %s", \
h5_rfmts[h5_call_stack_get_type()]); \
h5_debug (fmt, ret_value); \
} \
h5_call_stack_pop(); \
#define __API_RETURN(expr, mask) \
ret_value = expr; \
goto done; \
done: \
if (h5_debug_level & mask ) { \
char fmt[256]; \
snprintf (fmt, sizeof(fmt), "return: %s", \
h5_rfmts[h5_call_stack_get_type()]); \
h5_debug (fmt, ret_value); \
} \
h5_call_stack_reset (); \
return ret_value;
#define __FUNC_RETURN(expr, mask) \
ret_value = expr; \
goto done; \
done: \
if (h5_debug_level & mask ) { \
char fmt[256]; \
snprintf (fmt, sizeof(fmt), "return: %s", \
h5_rfmts[h5_call_stack_get_type()]); \
h5_debug (fmt, ret_value); \
h5_call_stack_pop(); \
} \
return ret_value;
#endif
//
//////////////////////////////////////////////////////////////////////////////
#define H5_API_ENTER_(type) \
if (!h5_initialized) { \
h5_initialize(); \
} \
__FUNC_ENTER(type);
#define H5_API_ENTER0(type) \
H5_API_ENTER_(type); \
__FUNC_ARGS0(H5_DEBUG_API)
#define H5_API_ENTER1(type, fmt, a1) \
H5_API_ENTER_(type); \
__FUNC_ARGS1(fmt, a1, H5_DEBUG_API)
#define H5_API_ENTER2(type, fmt, a1, a2) \
H5_API_ENTER_(type); \
__FUNC_ARGS2(fmt, a1,a2, H5_DEBUG_API)
#define H5_API_ENTER3(type, fmt, a1, a2, a3) \
H5_API_ENTER_(type); \
__FUNC_ARGS3(fmt, a1,a2,a3, H5_DEBUG_API)
#define H5_API_ENTER4(type, fmt, a1, a2, a3, a4) \
H5_API_ENTER_(type); \
__FUNC_ARGS4(fmt, a1,a2,a3, a4, H5_DEBUG_API)
#define H5_API_ENTER5(type, fmt, a1, a2, a3, a4, a5) \
H5_API_ENTER_(type); \
__FUNC_ARGS5(fmt, a1,a2,a3, a4, a5, H5_DEBUG_API)
#define H5_API_ENTER6(type, fmt, a1, a2, a3, a4, a5, a6) \
H5_API_ENTER_(type); \
__FUNC_ARGS6(fmt, a1,a2,a3, a4, a5, a6, H5_DEBUG_API)
#define H5_API_ENTER7(type, fmt, a1, a2, a3, a4, a5, a6, a7) \
H5_API_ENTER_(type); \
__FUNC_ARGS7(fmt, a1,a2,a3, a4, a5, a6, a7, H5_DEBUG_API)
#define H5_API_ENTER8(type, fmt, a1, a2, a3, a4, a5, a6, a7, a8) \
H5_API_ENTER_(type); \
__FUNC_ARGS8(fmt, a1,a2,a3, a4, a5, a6, a7, a8, H5_DEBUG_API)
#define H5_API_LEAVE(expr) __FUNC_LEAVE(expr)
#define H5_API_RETURN(expr) __FUNC_RETURN(expr, H5_DEBUG_API);
#define H5_API_ENTER(type, fmt, ...) \
if (!h5_initialized) { \
h5_initialize(); \
} \
__API_ENTER(type, H5_DEBUG_API, fmt, __VA_ARGS__)
#define H5_API_LEAVE(expr) __API_LEAVE(expr)
#define H5_API_RETURN(expr) __API_RETURN(expr, H5_DEBUG_API);
#define TRY( func ) \
src/include/h5core/h5_errorhandling.h
+4 -1
View File
@@ -58,6 +58,9 @@ h5_initialize (
H5_ERR_INVAL, \
"Attempting to write to read-only file" );
#define is_writable(f) (f->mode != H5_O_RDONLY)
#define CHECK_READONLY_MODE( f ) \
if ( ! f->mode==H5_O_RDONLY ) \
return h5_error ( \
@@ -73,7 +76,7 @@ h5_initialize (
#define h5_error_not_implemented() \
h5_error( \
H5_ERR_NOT_IMPLEMENTED, \
"%s: Function \"%s\", line %d not yet implemented!", \
"%s: Function '%s', line %d not yet implemented!", \
__FILE__, __func__, __LINE__);
#define h5_error_internal() \
src/include/h5core/h5_openclose.h
+2 -1
View File
@@ -9,7 +9,8 @@ h5_file_t *
h5_open_file (
const char *filename,
h5_int32_t flags,
MPI_Comm comm
MPI_Comm comm,
h5_size_t alignment
);
h5_err_t
src/include/h5core/h5_syscall.h
+51 -6
View File
@@ -1,26 +1,71 @@
#ifndef __H5_SYSCALL_H
#define __H5_SYSCALL_H
#include <stdlib.h>
#include <string.h>
#include "h5_errorhandling.h"
#define MALLOC_WRAPPER_ENTER(type, fmt, ...) \
__FUNC_ENTER(type, H5_DEBUG_MALLOC, fmt, __VA_ARGS__)
#define MALLOC_WRAPPER_LEAVE(value) __FUNC_LEAVE(value)
#define MALLOC_WRAPPER_RETURN(value) __FUNC_RETURN(value, H5_DEBUG_MALLOC)
#ifdef __cplusplus
extern "C" {
#endif
void*
static inline void_p
h5_alloc (
void* ptr,
const size_t size
);
) {
MALLOC_WRAPPER_ENTER (void_p, "ptr=%p, size=%lu", ptr, size);
ptr = realloc (ptr, size);
if (ptr == NULL) {
MALLOC_WRAPPER_LEAVE (
(void_p)h5_error (H5_ERR_NOMEM, "Out of memory."));
}
MALLOC_WRAPPER_RETURN (ptr);
}
void*
static inline void_p
h5_calloc (
const size_t count,
const size_t size
);
) {
MALLOC_WRAPPER_ENTER (void_p, "count=%zu , size=%zu", count, size);
void* ptr = calloc (count, size);
if (ptr == NULL) {
MALLOC_WRAPPER_LEAVE (
(void_p)h5_error (H5_ERR_NOMEM, "Out of memory."));
}
MALLOC_WRAPPER_RETURN (ptr);
}
h5_err_t
static inline h5_err_t
h5_free (
void* ptr
);
) {
MALLOC_WRAPPER_ENTER (h5_err_t, "ptr=%p", ptr);
if (ptr) {
free (ptr);
}
MALLOC_WRAPPER_RETURN (H5_SUCCESS);
}
static inline char_p
h5_strdup (
const char* s1
) {
MALLOC_WRAPPER_ENTER (char_p, "s='%s'", s1);
char_p s2 = h5_calloc (1, strlen (s1)+1 );
if (s2 == NULL) {
MALLOC_WRAPPER_LEAVE (
(char_p)h5_error (H5_ERR_NOMEM, "Out of memory."));
}
MALLOC_WRAPPER_RETURN (strcpy (s2, s1));
}
#ifdef __cplusplus
}
src/include/h5core/h5_types.h
+16 -7
View File
@@ -16,21 +16,26 @@ extern "C" {
H5_O_RDWR: dataset may exist
*/
#define H5_O_RDWR 0x01
#define H5_O_RDONLY 0x02
#define H5_O_WRONLY 0x04
#define H5_O_APPEND 0x08
#define H5_O_RDWR 0x001
#define H5_O_RDONLY 0x002
#define H5_O_WRONLY 0x004
#define H5_O_APPEND 0x008
#define H5_VFD_MPIPOSIX 0x10
#define H5_VFD_INDEPENDENT 0x20
#define H5_VFD_MPIPOSIX 0x010
#define H5_VFD_INDEPENDENT 0x020
#define H5_O_FLUSHSTEP 0x40
#define H5_FLUSH_FILE 0x040
#define H5_FLUSH_STEP 0x080
#define H5_FLUSH_DATASET 0x100
#define H5_FS_LUSTRE 0x200
#define H5_ID_T H5T_NATIVE_INT64
#define H5_FLOAT64_T H5T_NATIVE_DOUBLE
#define H5_FLOAT32_T H5T_NATIVE_FLOAT
#define H5_INT64_T H5T_NATIVE_INT64
#define H5_INT32_T H5T_NATIVE_INT32
#define H5_INT16_T H5T_NATIVE_INT16
#define H5_STRING_T H5T_NATIVE_CHAR
#define H5_COMPOUND_T H5T_COMPOUND
@@ -72,6 +77,10 @@ struct h5_file;
typedef struct h5_file h5_file_t;
typedef h5_file_t* h5_file_p;
struct h5t_mesh;
typedef struct h5t_mesh h5t_mesh_t;
typedef h5t_mesh_t* h5t_mesh_p;
typedef h5_err_t (*h5_errorhandler_t)(
const char*,
va_list ap );
src/include/h5core/h5t_adjacencies.h
+3 -3
View File
@@ -7,7 +7,7 @@ extern "C" {
h5_err_t
h5t_get_adjacencies (
h5_file_t * const f,
h5t_mesh_t* const m,
const h5_loc_id_t entity_id,
const h5_int32_t dim,
h5_loc_idlist_t **list
@@ -15,13 +15,13 @@ h5t_get_adjacencies (
h5_err_t
h5t_release_list_of_adjacencies (
h5_file_t * const f,
h5t_mesh_t* const m,
h5_loc_idlist_t **list
);
h5_err_t
h5t_find_te2 (
h5_file_t* const f,
h5t_mesh_t* const m,
h5_loc_idx_t face_idx,
h5_loc_idx_t elem_idx,
h5_loc_idlist_t** retval
src/include/h5core/h5t_inquiry.h
+4 -4
View File
@@ -17,24 +17,24 @@ h5t_get_num_trimeshes (
h5_ssize_t
h5t_get_num_leaf_levels (
h5_file_t * const f
h5t_mesh_t* const m
);
h5_ssize_t
h5t_get_num_elems (
h5_file_t * const f,
h5t_mesh_t* const m,
const h5_id_t cnode
);
h5_ssize_t
h5t_get_num_vertices (
h5_file_t * const f,
h5t_mesh_t* const m,
const h5_id_t cnode
);
h5t_lvl_idx_t
h5t_get_level (
h5_file_t * const f
h5t_mesh_t* const m
);
#ifdef __cplusplus
src/include/h5core/h5t_map.h
+13 -13
View File
@@ -7,13 +7,13 @@ extern "C" {
h5_loc_idx_t
h5t_map_global_vertex_idx2local (
h5_file_t* const f,
h5t_mesh_t* const m,
h5_glb_idx_t glb_idx
);
h5_err_t
h5t_map_global_vertex_indices2local (
h5_file_t* f,
h5t_mesh_t* f,
const h5_glb_id_t* const glb_indices,
const h5_size_t size,
h5_loc_idx_t* const loc_indices
@@ -21,13 +21,13 @@ h5t_map_global_vertex_indices2local (
h5_loc_idx_t
h5t_map_glb_elem_idx2loc (
h5_file_t * const f,
h5t_mesh_t* const m,
const h5_glb_idx_t glb_idx
);
h5_err_t
h5t_map_glb_elem_indices2loc (
h5_file_t * const f,
h5t_mesh_t* const m,
const h5_glb_idx_t* glb_indices,
const h5_size_t size,
h5_loc_idx_t* loc_indices
@@ -35,14 +35,14 @@ h5t_map_glb_elem_indices2loc (
h5_err_t
h5t_get_vertex_index_of_vertex (
h5_file_t* const f,
h5t_mesh_t* const m,
const h5_loc_id_t entity_id,
h5_loc_idx_t* vertex_index
);
h5_err_t
h5t_get_vertex_index_of_vertex2 (
h5_file_t* const f,
h5t_mesh_t* const m,
const h5_loc_idx_t face_idx,
const h5_loc_idx_t elem_idx,
h5_loc_idx_t* vertex_indices
@@ -50,14 +50,14 @@ h5t_get_vertex_index_of_vertex2 (
h5_err_t
h5t_get_vertex_indices_of_edge (
h5_file_t* const f,
h5t_mesh_t* const m,
const h5_loc_id_t entity_id,
h5_loc_idx_t *vertex_indices
);
h5_err_t
h5t_get_vertex_indices_of_edge2 (
h5_file_t* const f,
h5t_mesh_t* const m,
const h5_loc_idx_t face_idx,
const h5_loc_idx_t elem_id,
h5_loc_idx_t* vertex_indices
@@ -65,14 +65,14 @@ h5t_get_vertex_indices_of_edge2 (
h5_err_t
h5t_get_vertex_indices_of_triangle (
h5_file_t* const f,
h5t_mesh_t* const m,
const h5_loc_id_t entity_id,
h5_loc_idx_t* vertex_indices
);
h5_err_t
h5t_get_vertex_indices_of_triangle2 (
h5_file_t* const f,
h5t_mesh_t* const m,
const h5_loc_idx_t face_idx,
const h5_loc_idx_t elem_idx,
h5_loc_idx_t* vertex_indices
@@ -80,21 +80,21 @@ h5t_get_vertex_indices_of_triangle2 (
h5_err_t
h5t_get_vertex_indices_of_tet (
h5_file_t* const f,
h5t_mesh_t* const m,
const h5_loc_id_t entity_id,
h5_loc_idx_t *vertex_indices
);
h5_err_t
h5t_get_vertex_indices_of_entity (
h5_file_t * const f,
h5t_mesh_t* const m,
const h5_loc_id_t entity_id,
h5_loc_idx_t *vertex_indices
);
h5_err_t
h5t_get_vertex_indices_of_entity2 (
h5_file_t* const f,
h5t_mesh_t* const m,
const int dim,
const h5_loc_idx_t face_idx,
const h5_loc_idx_t elem_idx,
src/include/h5core/h5t_model.h
+10 -23
View File
@@ -5,33 +5,20 @@
extern "C" {
#endif
h5_err_t h5t_open_tetrahedral_mesh (
h5_file_t * const f,
const h5_id_t id
);
h5_err_t h5t_open_tetrahedral_mesh (h5_file_t* const, const char*, h5t_mesh_t**);
h5_err_t h5t_open_tetrahedral_mesh_by_idx (h5_file_t* const, const h5_id_t, h5t_mesh_t**);
h5_err_t h5t_open_triangle_mesh (
h5_file_t * const f,
const h5_id_t id
);
h5_err_t h5t_open_triangle_mesh (h5_file_t* const, const char*, h5t_mesh_t**);
h5_err_t h5t_open_triangle_mesh_by_idx (h5_file_t* const, const h5_id_t, h5t_mesh_t**);
h5_id_t
h5t_add_tetrahedral_mesh (
h5_file_t * const f
);
h5_id_t
h5t_add_triangle_mesh (
h5_file_t * const f
);
h5_id_t h5t_add_tetrahedral_mesh (h5_file_t* const, const char* name, h5t_mesh_t**);
h5_err_t h5t_set_level (
h5_file_t * const f,
const h5t_lvl_idx_t id
);
h5_err_t h5t_close_mesh (
h5_file_t * const f
);
h5_id_t h5t_add_triangle_mesh (h5_file_t* const, const char*, h5t_mesh_t**);
h5_err_t h5t_set_level (h5t_mesh_t* const, const h5t_lvl_idx_t);
h5_err_t h5t_close_mesh (h5t_mesh_t* const);
#ifdef __cplusplus
}
src/include/h5core/h5t_retrieve.h
+18 -45
View File
@@ -9,29 +9,31 @@ struct h5t_tagset;
union h5t_iterator;
typedef struct {
h5_loc_id_t (*iter)(h5_file_t *const f, union h5t_iterator* iter);
h5t_mesh_t* mesh;
h5_loc_id_t (*iter)(union h5t_iterator*);
h5t_lvl_idx_t leaf_level;
const h5t_ref_elem_t* ref_elem;
h5_loc_idx_t elem_idx;
h5_loc_idx_t face_idx; // face according reference element
int codim; // dimension of entities to traverse
h5_err_t (*find)(h5_file_t *const f, h5_loc_id_t face_idx,
h5_loc_id_t elem_idx, h5_loc_idlist_t **retval);
h5_err_t (*find)(h5t_mesh_t *const, h5_loc_id_t, h5_loc_id_t, h5_loc_idlist_t**);
} h5t_leaf_iterator_t;
typedef struct {
h5_loc_id_t (*iter)(h5_file_t *const f, union h5t_iterator* iter);
h5t_mesh_t* mesh;
h5_loc_id_t (*iter)(union h5t_iterator* iter);
h5t_lvl_idx_t refinement_level;
const h5t_ref_elem_t* ref_elem;
h5_loc_idx_t elem_idx;
h5_loc_idx_t face_idx; // face according reference element
int codim; // dimension of entities to traverse
h5_err_t (*find)(h5_file_t *const f, h5_loc_id_t face_idx,
h5_err_t (*find)(h5t_mesh_t *const f, h5_loc_id_t face_idx,
h5_loc_id_t elem_idx, h5_loc_idlist_t **retval);
} h5t_level_iterator_t;
typedef struct {
h5_loc_id_t (*iter)(h5_file_t *const f, union h5t_iterator* iter);
h5t_mesh_t* mesh;
h5_loc_id_t (*iter)(union h5t_iterator* iter);
h5t_lvl_idx_t level_idx;
struct h5t_tagset* tagset;
h5_loc_idx_t elem_idx;
@@ -39,7 +41,8 @@ typedef struct {
} h5t_tag_iterator_t;
typedef struct h5t_generic_iterator {
h5_loc_id_t (*iter)(h5_file_t *const f, union h5t_iterator* iter);
h5t_mesh_t* mesh;
h5_loc_id_t (*iter)(union h5t_iterator* iter);
} h5t_generic_iterator_t;
typedef union h5t_iterator {
@@ -52,58 +55,28 @@ typedef union h5t_iterator {
typedef h5t_iterator_t* h5t_iterator_p;
h5_err_t
h5t_init_leaf_iterator (
h5_file_t* f,
h5t_iterator_t* iter,
const int codim
);
h5t_init_leaf_iterator (h5t_iterator_t*, h5t_mesh_t*, const int);
h5_err_t
h5t_init_boundary_face_iterator (
h5_file_t* f,
h5t_iterator_t* iter,
const int codim
);
h5t_init_boundary_face_iterator (h5t_iterator_t*, h5t_mesh_t*, const int);
h5_err_t
h5t_init_mtag_iterator (
h5_file_t* f,
h5t_iterator_t* iter,
const char* name
);
h5t_init_mtag_iterator (h5t_iterator_t*, h5t_mesh_t*, const char*);
h5_err_t
h5t_release_entity_iterator (
h5_file_t* const f,
h5t_iterator_t* iter
);
h5t_release_entity_iterator (h5t_iterator_t*);
h5_loc_id_t
h5t_iterate_entities (
h5_file_t * const f,
h5t_iterator_t *iter
);
h5t_iterate_entities (h5t_iterator_t*);
h5_err_t
h5t_end_iterate_entities (
h5_file_t * const f,
h5t_iterator_t *iter
);
h5t_end_iterate_entities (h5t_iterator_t*);
h5_err_t
h5t_get_vertex_coords_by_index (
h5_file_t* const f,
h5_loc_idx_t vertex_idx,
h5_float64_t P[3]
);
h5t_get_vertex_coords_by_index (h5t_mesh_t* const, h5_loc_idx_t, h5_float64_t[3]);
h5_err_t
h5t_get_vertex_coords_by_id (
h5_file_t* const f,
h5_loc_id_t vertex_id,
h5_float64_t P[3]
);
h5t_get_vertex_coords_by_id (h5t_mesh_t* const, h5_loc_id_t, h5_float64_t[3]);
#ifdef __cplusplus
}
src/include/h5core/h5t_storemesh.h
+14 -49
View File
@@ -6,81 +6,46 @@ extern "C" {
#endif
h5t_lvl_idx_t
h5t_add_level (
h5_file_t * const f
);
h5t_add_level (h5t_mesh_t* const);
h5_err_t
h5t_begin_store_vertices (
h5_file_t * const f,
const h5_size_t num
);
h5t_begin_store_vertices (h5t_mesh_t* const, const h5_size_t);
h5_loc_id_t
h5t_store_vertex (
h5_file_t * const f,
const h5_glb_id_t glb_id,
const h5_float64_t P[3]
);
h5t_store_vertex (h5t_mesh_t* const, const h5_glb_id_t, const h5_float64_t[3]);
h5_err_t
h5t_end_store_vertices (
h5_file_t * const f
);
h5t_end_store_vertices (h5t_mesh_t* const);
h5_err_t
h5t_begin_store_elems (
h5_file_t * const f,
const h5_size_t num
);
h5t_begin_store_elems (h5t_mesh_t* const, const h5_size_t);
h5_loc_idx_t
h5t_store_elem (
h5_file_t * const f,
const h5_loc_idx_t parent_idx,
const h5_loc_idx_t* vertex_indices
);
h5t_store_elem (h5t_mesh_t* const, const h5_loc_idx_t, const h5_loc_idx_t*);
h5_err_t
h5t_end_store_elems (
h5_file_t * const f
);
h5t_end_store_elems (h5t_mesh_t* const);
h5_err_t
h5t_begin_refine_elems (
h5_file_t * const f
);
h5t_begin_refine_elems (h5t_mesh_t* const);
h5_err_t
h5t_refine_marked_elems (
h5_file_t * const f
);
h5t_refine_marked_elems (h5t_mesh_t* const);
h5_err_t
h5t_end_refine_elems (
h5_file_t * const f
);
h5t_end_refine_elems (h5t_mesh_t* const);
h5_err_t
h5t_mark_entity (
h5_file_t* const f,
const h5_loc_id_t entity_id
);
h5t_mark_entity (h5t_mesh_t* const, const h5_loc_id_t);
h5_err_t
h5t_pre_refine (
h5_file_t* const f
);
h5t_pre_refine (h5t_mesh_t* const);
h5_err_t
h5t_refine (
h5_file_t* const f
);
h5t_refine (h5t_mesh_t* const);
h5_err_t
h5t_post_refine (
h5_file_t* const f
);
h5t_post_refine (h5t_mesh_t* const);
#ifdef __cplusplus
}
src/include/h5core/h5t_tags.h
+20 -82
View File
@@ -8,98 +8,36 @@ extern "C" {
typedef struct h5t_tagset h5t_tagset_t;
typedef struct h5t_tagcontainer h5t_tagcontainer_t;
h5_err_t
h5t_mtagset_exists (
h5_file_t* const f,
h5t_tagcontainer_t* ctn,
char* name
);
h5_err_t
h5t_add_mtagset (
h5_file_t* const f,
char name[],
h5_id_t type
);
h5_err_t
h5t_remove_mtagset (
h5_file_t* const f,
const char name[]
);
h5_err_t
h5t_open_mtagset (
h5_file_t* const f,
const char *name,
h5t_tagset_t** retval
);
h5_ssize_t
h5t_get_num_mtagsets (
h5_file_t* const f
);
h5_ssize_t
h5t_get_mtagsets (
h5_file_t* const f,
char** names[]
);
h5_err_t
h5t_get_mtagset_info (
h5_file_t* const f,
const h5_id_t idx,
char** names,
h5_id_t* type
);
h5_id_t
h5t_get_mtagset_type_by_name (
h5_file_t* const f,
char name[]
);
h5t_get_num_mtagsets (h5t_mesh_t* const);
h5_err_t
h5t_set_mtag_by_name (
h5_file_t* const f,
char name[],
const h5_loc_id_t entity_id,
const size_t dim,
void* value
);
h5t_get_mtagset_info (h5t_mesh_t* const, const h5_size_t, char[],
const h5_size_t, h5_int64_t* const);
h5_err_t
h5t_get_mtag_by_name (
h5_file_t* const f,
const char name[],
const h5_loc_id_t entity_id,
size_t* dim,
void* vals );
h5t_mtagset_exists (h5t_mesh_t* const, const char* const);
h5_err_t
h5t_remove_mtag_by_name (
h5_file_t* const f,
const char name[],
const h5_loc_id_t entity_id
);
h5_ssize_t
h5t_get_tag (
h5_file_t *const f,
const h5t_tagset_t *tagset,
const h5_loc_id_t entity_id,
size_t* const dim,
void* const vals
);
h5t_create_mtagset (h5t_mesh_t* const, const char[], const h5_id_t, h5t_tagset_t**);
h5_err_t
h5t_remove_mtag (
h5_file_t* const f,
h5t_tagset_t* tagset,
const h5_loc_id_t entity_id
);
h5t_open_mtagset (h5t_mesh_t* const, const char* const, h5t_tagset_t**);
h5_ssize_t
h5t_get_mtagset_names_of_entity (
h5_file_t* const f,
const h5_loc_id_t entity_id,
char *names[],
const h5_size_t dim
);
h5_err_t
h5t_close_mtagset (h5t_tagset_t*);
h5_err_t
h5t_remove_mtagset (h5t_mesh_t* const, const char[]);
h5_err_t
h5t_set_tag (h5t_tagset_t* const, const h5_loc_id_t, const h5_size_t, void*);
h5_loc_id_t
h5t_get_tag (const h5t_tagset_t*, const h5_loc_id_t, h5_size_t* const, void* const);
h5_err_t
h5t_remove_tag (h5t_tagset_t*, const h5_loc_id_t);
#ifdef __cplusplus
}