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first part of LBL merge: h5core and H5Part

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This commit is contained in:
Marc Howison
2010-06-26 17:29:37 +00:00
parent 6ea921eba4
commit 8783ac2cf2
44 changed files with 2192 additions and 2002 deletions
Download Patch File Download Diff File Expand all files Collapse all files
src/include/H5.h
+11 -3
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@@ -21,8 +21,8 @@
h5_file_t *
H5OpenFile (
const char * filename,
const h5_int32_t oflag,
const MPI_Comm comm
h5_int32_t flag,
MPI_Comm comm
);
h5_err_t
@@ -42,7 +42,7 @@ H5GetStepNameFormat (
h5_file_t *f,
char *name,
const h5_size_t l_name,
h5_size_t *width
int *width
);
h5_err_t
@@ -105,4 +105,12 @@ H5GetErrno (
h5_file_t * const f
);
#ifdef PARALLEL_IO
h5_err_t
H5SetThrottle (
h5_file_t* f,
int factor
);
#endif
#endif
src/include/H5_inquiry.h
+1 -1
View File
@@ -1,7 +1,7 @@
#ifndef __H5_INQUIRY_H
#define __H5_INQUIRY_H
h5_size_t
int
H5GetNumNodes (
h5_file_t * const f
);
src/include/h5core/h5_core.h
+1
View File
@@ -11,6 +11,7 @@
#include "h5_openclose.h"
#include "h5_readwrite.h"
#include "h5u_readwrite.h"
#include "h5u_model.h"
#include "h5t_core.h"
src/include/h5core/h5_openclose.h
+14 -3
View File
@@ -23,15 +23,15 @@ h5_int64_t
h5_set_stepname_fmt (
h5_file_t * const f,
const char *name,
const h5_int64_t width
int width
);
h5_err_t
h5_get_stepname_fmt (
h5_file_t * const f,
char *name,
const h5_size_t l_name,
h5_size_t *width
int l_name,
int *width
);
h5_err_t
@@ -39,6 +39,16 @@ h5priv_close_step (
h5_file_t * const f
);
int
h5_get_num_procs (
h5_file_t* const f
);
h5_size_t
h5_get_num_steps (
h5_file_t* const f
);
h5_int64_t
h5_has_step (
h5_file_t * const f,
@@ -59,4 +69,5 @@ h5_err_t
h5_traverse_steps (
h5_file_t * f /*!< file handle */
);
#endif
src/include/h5core/h5_readwrite.h
+22
View File
@@ -37,4 +37,26 @@ h5_has_index (
h5_int64_t step /*!< [in] Step number to query */
);
h5_err_t
h5_normalize_dataset_name (
const char *name,
char *name2
);
h5_err_t
h5_set_throttle (
h5_file_t *f,
int factor
);
h5_err_t
h5_start_throttle (
h5_file_t *f
);
h5_err_t
h5_end_throttle (
h5_file_t *f
);
#endif
src/include/h5core/h5_types.h
+9 -47
View File
@@ -12,10 +12,13 @@
H5_O_RDWR: dataset may exist
*/
#define H5_O_RDWR 0
#define H5_O_RDONLY 1
#define H5_O_WRONLY 2
#define H5_O_APPEND 3
#define H5_O_RDWR 0x01
#define H5_O_RDONLY 0x02
#define H5_O_WRONLY 0x04
#define H5_O_APPEND 0x08
#define H5_VFD_MPIPOSIX 0x10
#define H5_VFD_INDEPENDENT 0x20
#define H5_ID_T H5T_NATIVE_INT64
#define H5_FLOAT64_T H5T_NATIVE_DOUBLE
@@ -51,6 +54,8 @@ typedef h5_float64_t h5_coord3d_t[3];
struct h5_file;
typedef struct h5_file h5_file_t;
typedef h5_err_t (*h5_errorhandler_t)(
struct h5_file * const,
const char*,
@@ -69,49 +74,6 @@ typedef struct h5_idlist {
struct h5_idmap;
typedef struct h5_idmap h5_idmap_t;
/**
\struct h5_file
This is an essentially opaque datastructure that
acts as the filehandle for all practical purposes.
It is created by H5PartOpenFile<xx>() and destroyed by
H5PartCloseFile().
*/
struct h5_file {
hid_t file; /* file id -> fid */
unsigned mode; /* file access mode */
int empty;
h5_err_t __errno; /* error number */
const char * __funcname; /* H5Block/Fed/Part API function*/
/* MPI */
MPI_Comm comm; /* MPI communicator */
int nprocs; /* number of processors */
int myproc; /* The index of the processor
this process is running on. */
/* HDF5 */
hid_t xfer_prop; /* file transfer properties */
hid_t create_prop; /* file create properties */
hid_t access_prop; /* file access properties */
hid_t root_gid; /* id of root group */
hid_t step_gid; /* id of current step */
/* step internal data */
char prefix_step_name[256]; /* Prefix of step name */
int width_step_idx; /* pad step index with 0 up to this */
char step_name[128]; /* full step name */
h5_int64_t step_idx; /* step index */
int is_new_step;
struct h5u_fdata *u;
struct h5b_fdata *b;
struct h5t_fdata *t;
};
typedef struct h5_file h5_file_t;
enum h5_oid {
H5_OID_VERTEX = 1,
src/include/h5core/h5t_core.h
+3
View File
@@ -1,6 +1,9 @@
#ifndef __H5T_CORE_H
#define __H5T_CORE_H
#include <limits.h>
#include <stdint.h>
#include "h5t_adjacencies.h"
#include "h5t_inquiry.h"
#include "h5t_map.h"
src/include/h5core/h5t_inquiry.h
+2 -2
View File
@@ -15,13 +15,13 @@ h5t_get_num_levels (
h5_size_t
h5t_get_num_elems (
h5_file_t * const f,
const h5_id_t cnode_id
const h5_id_t cnode
);
h5_size_t
h5t_get_num_vertices (
h5_file_t * const f,
const h5_id_t cnode_id
const h5_id_t cnode
);
h5_id_t
src/include/h5core/h5u_model.h
+74
View File
@@ -0,0 +1,74 @@
#ifndef __H5U_MODEL_H
#define __H5U_MODEL_H
h5_int64_t
h5u_get_num_particles (
h5_file_t *f
);
h5_int64_t
h5u_set_num_particles (
h5_file_t *f,
h5_int64_t nparticles,
h5_int64_t stride
);
h5_int64_t
h5u_has_view (
h5_file_t *f
);
h5_int64_t
h5u_reset_view (
h5_file_t *f
);
h5_int64_t
h5u_set_view (
h5_file_t *f,
h5_int64_t start,
h5_int64_t end
);
h5_int64_t
h5u_set_view_indices (
h5_file_t *f,
const h5_int64_t *indices,
h5_int64_t nelems
);
h5_int64_t
h5u_get_view (
h5_file_t *f,
h5_int64_t *start,
h5_int64_t *end
);
h5_int64_t
h5u_set_canonical_view (
h5_file_t *f
);
h5_int64_t
h5u_get_num_datasets (
h5_file_t *f
);
h5_int64_t
h5u_get_dataset_info (
h5_file_t *f,
const h5_int64_t idx,
char *dataset_name,
const h5_int64_t len_dataset_name,
h5_int64_t *type,
h5_int64_t *nelem
);
h5_err_t
h5u_set_chunk (
h5_file_t *f,
h5_size_t size
);
#endif
src/include/h5core/h5u_readwrite.h
+2 -50
View File
@@ -2,24 +2,13 @@
#define __H5U_READWRITE_H
h5_int64_t
h5u_get_num_elems (
h5_file_t *f
);
h5_int64_t
h5u_read_elems (
h5u_read_data (
h5_file_t *f,
const char *name,
void *array,
const hid_t type
);
h5_int64_t
h5u_set_num_elements (
h5_file_t *f,
h5_int64_t nparticles
);
h5_int64_t
h5u_write_data (
h5_file_t *f,
@@ -28,42 +17,5 @@ h5u_write_data (
const hid_t type
);
h5_int64_t
h5u_has_view (
h5_file_t *f
);
h5_int64_t
h5u_reset_view (
h5_file_t *f
);
h5_int64_t
h5u_set_view (
h5_file_t *f,
h5_int64_t start,
h5_int64_t end
);
h5_int64_t
h5u_get_view (
h5_file_t *f,
h5_int64_t *start,
h5_int64_t *end
);
h5_int64_t
h5u_set_canonical_view (
h5_file_t *f
);
h5_int64_t
h5u_get_dataset_info (
h5_file_t *f,
const h5_int64_t idx,
char *dataset_name,
const h5_int64_t len_dataset_name,
h5_int64_t *type,
h5_int64_t *nelem
);
#endif