added h5hutcc wrapper
updated documentation finished merging the Fortran interface and refactoring H5Block started an H5Block regression test
This commit is contained in:
Marc Howison
@@ -16,8 +16,6 @@
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#ifndef __H5_H
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#define __H5_H
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#include "H5_attribs.h"
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h5_file_t *
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H5OpenFile (
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const char * filename,
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+48
-23
@@ -1,8 +1,10 @@
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#ifndef __H5BLOCK_H
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#define __H5BLOCK_H
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#include "H5.h"
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#include "H5Block_readwrite.h"
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h5_int64_t
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H5Block3dHasView (
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h5_file_t *const f /*!< IN: File handle */
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);
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h5_err_t
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H5Block3dSetView (
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@@ -18,7 +20,6 @@ H5Block3dSetView (
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h5_err_t
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H5Block3dGetView (
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h5_file_t *const f, /*!< IN: File handle */
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const int proc, /*!< IN: Processor to get partition from */
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h5_size_t *i_start, /*!< OUT: start index of \c i */
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h5_size_t *i_end, /*!< OUT: end index of \c i */
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h5_size_t *j_start, /*!< OUT: start index of \c j */
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@@ -27,6 +28,17 @@ H5Block3dGetView (
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h5_size_t *k_end /*!< OUT: end index of \c k */
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);
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h5_err_t
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H5Block3dGetReducedView (
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h5_file_t *const f, /*!< IN: File handle */
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h5_size_t *i_start, /*!< OUT: start index of \c i */
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h5_size_t *i_end, /*!< OUT: end index of \c i */
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h5_size_t *j_start, /*!< OUT: start index of \c j */
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h5_size_t *j_end, /*!< OUT: end index of \c j */
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h5_size_t *k_start, /*!< OUT: start index of \c j */
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h5_size_t *k_end /*!< OUT: end index of \c j */
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);
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h5_err_t
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H5Block3dSetChunk (
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h5_file_t *const f, /*!< IN: File handle */
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@@ -43,23 +55,36 @@ H5Block3dGetChunk (
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);
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h5_err_t
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H5Block3dGetReducedView (
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h5_file_t *const f, /*!< IN: File handle */
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const int proc, /*!< IN: Processor to get partition from */
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h5_size_t *i_start, /*!< OUT: start index of \c i */
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h5_size_t *i_end, /*!< OUT: end index of \c i */
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h5_size_t *j_start, /*!< OUT: start index of \c j */
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h5_size_t *j_end, /*!< OUT: end index of \c j */
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h5_size_t *k_start, /*!< OUT: start index of \c j */
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h5_size_t *k_end /*!< OUT: end index of \c j */
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H5Block3dSetGrid (
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h5_file_t *const f, /*!< IN: File handle */
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const h5_size_t i, /*!< IN: dimension in \c i */
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const h5_size_t j, /*!< IN: dimension in \c j */
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const h5_size_t k /*!< IN: dimension in \c k */
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);
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int
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H5Block3dGetProc (
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h5_err_t
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H5Block3dGetGridCoords (
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h5_file_t *const f, /*!< IN: File handle */
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const h5_int64_t i, /*!< IN: \c i coordinate */
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const h5_int64_t j, /*!< IN: \c j coordinate */
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const h5_int64_t k /*!< IN: \c k coordinate */
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const int proc, /*!< IN: MPI processor */
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h5_int64_t *i, /*!< OUT: index in \c i */
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h5_int64_t *j, /*!< OUT: index in \c j */
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h5_int64_t *k /*!< OUT: index in \c k */
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);
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h5_err_t
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H5Block3dSetDims (
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h5_file_t *const f, /*!< IN: File handle */
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const h5_size_t i, /*!< IN: dimension in \c i */
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const h5_size_t j, /*!< IN: dimension in \c j */
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const h5_size_t k /*!< IN: dimension in \c k */
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);
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h5_err_t
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H5Block3dSetHalo (
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h5_file_t *const f, /*!< IN: File handle */
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const h5_size_t i, /*!< IN: radius in \c i */
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const h5_size_t j, /*!< IN: radius in \c j */
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const h5_size_t k /*!< IN: radius in \c k */
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);
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h5_size_t
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@@ -113,15 +138,15 @@ H5BlockGetNumFieldAttribs (
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h5_int64_t
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H5BlockGetFieldAttribInfo (
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h5_file_t *const f, /*!< [in] Handle to open file */
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h5_file_t *const f, /*<! IN: Handle to open file */
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const char *field_name, /*<! IN: field name */
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const h5_size_t attrib_idx, /*!< [in] Index of attribute to
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const h5_size_t attrib_idx, /*<! IN: Index of attribute to
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get infos about */
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char *attrib_name, /*!< [out] Name of attribute */
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char *attrib_name, /*<! OUT: Name of attribute */
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const h5_size_t len_of_attrib_name,
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/*!< [in] length of buffer \c name */
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h5_int64_t *attrib_type, /*!< [out] Type of value. */
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h5_size_t *attrib_nelem /*!< [out] Number of elements */
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/*<! IN: length of buffer \c name */
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h5_int64_t *attrib_type, /*<! OUT: Type of value. */
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h5_size_t *attrib_nelem /*<! OUT: Number of elements */
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);
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@@ -7,8 +7,10 @@ extern "C" {
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#include "h5core/h5_core.h"
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#include "H5.h"
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#include "H5_attribs.h"
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#include "H5Part.h"
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#include "H5Block.h"
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#include "H5Block_readwrite.h"
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#include "H5Fed.h"
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#ifdef __cplusplus
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@@ -1,15 +1,70 @@
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#ifndef __H5B_MODEL_H
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#define __H5B_MODEL_H
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h5_err_t
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h5bpriv_release_hyperslab (
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h5_file_t *const f /*!< IN: file handle */
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);
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h5_err_t
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h5bpriv_open_block_group (
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h5_file_t *const f /*!< IN: file handle */
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);
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h5_err_t
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h5bpriv_have_field_group (
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h5_file_t *const f, /*!< IN: file handle */
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const char *name
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);
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h5_err_t
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h5bpriv_open_field_group (
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h5_file_t *const f, /*!< IN: file handle */
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const char *name
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);
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h5_err_t
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h5bpriv_create_field_group (
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h5_file_t *const f, /*!< IN: file handle */
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const char *name /*!< IN: name of field group to create */
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);
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h5_int64_t
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h5b_3d_has_view (
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h5_file_t *const f /*!< IN: File handle */
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);
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h5_err_t
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h5b_3d_set_view (
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h5_file_t *const f, /*!< IN: File handle */
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const h5_size_t i_start, /*!< IN: start index of \c i */
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const h5_size_t i_end, /*!< IN: end index of \c i */
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const h5_size_t j_start, /*!< IN: start index of \c j */
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const h5_size_t j_end, /*!< IN: end index of \c j */
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const h5_size_t j_end, /*!< IN: end index of \c j */
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const h5_size_t k_start, /*!< IN: start index of \c k */
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const h5_size_t k_end /*!< IN: end index of \c k */
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const h5_size_t k_end /*!< IN: end index of \c k */
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);
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h5_err_t
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h5b_3d_get_view (
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h5_file_t *const f, /*!< IN: File handle */
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h5_size_t *i_start, /*!< OUT: start index of \c i */
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h5_size_t *i_end, /*!< OUT: end index of \c i */
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h5_size_t *j_start, /*!< OUT: start index of \c j */
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h5_size_t *j_end, /*!< OUT: end index of \c j */
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h5_size_t *k_start, /*!< OUT: start index of \c k */
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h5_size_t *k_end /*!< OUT: end index of \c k */
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);
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h5_err_t
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h5b_3d_get_reduced_view (
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h5_file_t *const f, /*!< IN: File handle */
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h5_size_t *i_start, /*!< OUT: start index of \c i */
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h5_size_t *i_end, /*!< OUT: end index of \c i */
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h5_size_t *j_start, /*!< OUT: start index of \c j */
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h5_size_t *j_end, /*!< OUT: end index of \c j */
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h5_size_t *k_start, /*!< OUT: start index of \c k */
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h5_size_t *k_end /*!< OUT: end index of \c k */
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);
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h5_err_t
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@@ -24,45 +79,46 @@ h5_err_t
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h5b_3d_get_chunk (
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h5_file_t *const f, /*!< IN: File handle */
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const char *field_name, /*!< IN: name of dataset */
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h5_size_t *dims /*!< OUT: array containing the chunk dimensions */
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h5_size_t *dims /*!< OUT: array containing the chunk dimensions */
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);
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h5_err_t
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h5b_3d_get_view (
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h5_file_t *const f, /*!< IN: File handle */
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const int proc, /*!< IN: Processor to get partition from */
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h5_size_t *i_start, /*!< OUT: start index of \c i */
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h5_size_t *i_end, /*!< OUT: end index of \c i */
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h5_size_t *j_start, /*!< OUT: start index of \c j */
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h5_size_t *j_end, /*!< OUT: end index of \c j */
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h5_size_t *k_start, /*!< OUT: start index of \c k */
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h5_size_t *k_end /*!< OUT: end index of \c k */
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);
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h5_err_t
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h5b_3d_get_reduced_view (
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h5_file_t *const f, /*!< IN: File handle */
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const int proc, /*!< IN: Processor to get partition from */
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h5_size_t *i_start, /*!< OUT: start index of \c i */
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h5_size_t *i_end, /*!< OUT: end index of \c i */
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h5_size_t *j_start, /*!< OUT: start index of \c j */
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h5_size_t *j_end, /*!< OUT: end index of \c j */
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h5_size_t *k_start, /*!< OUT: start index of \c k */
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h5_size_t *k_end /*!< OUT: end index of \c k */
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);
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int
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h5b_3d_get_proc (
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h5b_3d_set_grid (
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h5_file_t *const f, /*!< IN: File handle */
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const h5_int64_t i, /*!< IN: \c i coordinate */
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const h5_int64_t j, /*!< IN: \c j coordinate */
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const h5_int64_t k /*!< IN: \c k coordinate */
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const h5_size_t i, /*!< IN: dimension in \c i */
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const h5_size_t j, /*!< IN: dimension in \c j */
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const h5_size_t k /*!< IN: dimension in \c k */
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);
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h5_err_t
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h5b_3d_get_grid_coords (
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h5_file_t *const f, /*!< IN: File handle */
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const int proc, /*!< IN: MPI processor */
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h5_int64_t *i, /*!< OUT: index in \c i */
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h5_int64_t *j, /*!< OUT: index in \c j */
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h5_int64_t *k /*!< OUT: index in \c k */
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);
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h5_err_t
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h5b_3d_set_dims (
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h5_file_t *const f, /*!< IN: File handle */
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const h5_size_t i, /*!< IN: dimension in \c i */
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const h5_size_t j, /*!< IN: dimension in \c j */
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const h5_size_t k /*!< IN: dimension in \c k */
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);
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h5_err_t
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h5b_3d_set_halo (
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h5_file_t *const f, /*!< IN: File handle */
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const h5_size_t i, /*!< IN: radius in \c i */
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const h5_size_t j, /*!< IN: radius in \c j */
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const h5_size_t k /*!< IN: radius in \c k */
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);
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h5_ssize_t
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h5b_get_num_fields (
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h5_file_t *const f /*!< IN: File handle */
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);
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);
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h5_err_t
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h5b_get_field_info_by_name (
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@@ -86,5 +142,5 @@ h5b_get_field_info (
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h5_int64_t *type /*!< OUT: datatype */
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);
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#endif
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#endif
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