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311 Commits
master .. H5Part-1.6.3

Author SHA1 Message Date
Marc Howison b1aa655b22 1.6.3 release 2011-07-25 14:09:43 +00:00
Marc Howison efb1e39233 more fixes to the new libtool build system 2011-07-19 01:31:21 +00:00
Marc Howison 5b611ab155 new build system for both H5hut and H5Part; preparing 1.6.3 release of H5Part 2011-07-16 18:30:25 +00:00
Marc Howison 66449ee44d fixed mismatched function names and uncorrected indices in Fortran API; incorporated bug report for Fortran test 2011-02-01 16:36:00 +00:00
Marc Howison d368a60202 bug fixes in Fortran API for 1.6.2 2010-07-28 21:44:48 +00:00
Marc Howison 6b4b556ff1 removed H5PartSetViewEmpty and enabled 0 as input to H5PartSetNumParticles 2010-06-29 16:39:29 +00:00
Marc Howison 0857443617 fixed spelling errors in NEWS 2010-06-11 17:48:42 +00:00
Marc Howison e3b93e4383 removed redundant VFD code in _H5Part_open and added an option for CORE VFD 2010-05-13 17:54:38 +00:00
Marc Howison 3e99a8ccfa fixed autoconf issue with PGI compilers and #define issue with OpenMPI 2010-05-03 20:04:34 +00:00
Marc Howison bb41cc3288 added documentation for file open flags; added flags to h5pt_openr_par_align(); added H5PartSetViewEmpty() and h5pt_setview_empty() calls for creating empty hyperslab selections (previously kludge was to use H5PartSetViewIndices with a null list); fixed memory leak with file open flags in the Fortran interface; fixed missing statement in 1.6.x logic for _H5Part_have_group() 2010-04-29 16:17:51 +00:00
Marc Howison cf1368291d fixed the H5PART_HAVE_HDF5_18 logic to work with the 1.9 snapshot; fixed broken test in _H5Part_have_group in the codepath for HDF5 1.6 2010-03-23 22:18:40 +00:00
Marc Howison 698b5e0c76 removed config.h.in 2010-03-11 23:04:27 +00:00
Marc Howison ea40b3272e fixes to lustre optimizations 2010-03-11 23:00:43 +00:00
Marc Howison 90f8506628 changed print functions to only print from proc 0 in parallel mode, except for 'debug detail' level which prints from all procs 2010-02-23 19:45:43 +00:00
Marc Howison a7727635a7 reverted the rename of xfer_prop because it is used in OPAL 2010-02-22 21:18:37 +00:00
Marc Howison 66476adf6a removed overloaded use of H5_USE_16_API so that it can be used with HDF 1.85 without invoking the HDF5 1.6 codepath in places 2010-02-22 18:35:37 +00:00
Marc Howison 1c4c62192d added chunking for H5Part; had to remove open object test because out-of-order file handle / property list closes were causing errors 2010-02-18 21:08:03 +00:00
Marc Howison fb660f8459 changed throttling routine; removed read-only restriction for setting step to existing steps; revised NEWS 2010-02-18 18:56:39 +00:00
Marc Howison 20bff7f87c fixes for HDF5 1.6.x 2010-02-17 03:19:20 +00:00
Marc Howison 64c2b96f27 incorporated fixes from Gunther for 1.6.0 release 2010-02-16 18:46:57 +00:00
Marc Howison 1d23bdab85 1.6 release: moved 1.5 to 1.6; copied 1.6 to tags/H5Part-1.6.0; copied 1.6 to 1.7 2010-02-16 17:06:40 +00:00
Marc Howison 0de2f00b08 fixed H5PartGetNumParticles to correctly count indexed views; added type parameter to H5BlockGetFieldInfo/ByName 2010-02-11 22:28:49 +00:00
Marc Howison 3300a665b5 updates to makefiles; added CrayXT configure crutch 2010-02-11 19:39:25 +00:00
Marc Howison f671d1ab9f fixed missing test/testf.F90 2010-02-11 17:42:56 +00:00
Marc Howison ec7184bf2d fixed missing test/read.c 2010-02-11 17:42:18 +00:00
Marc Howison 46574c2482 fixed bug in strided selection; added examples dir with a strided write Fortran program (more examples to come...) 2010-02-11 17:34:50 +00:00
Marc Howison 2bb96c6f69 updated NEWS with details about 1.6 changes; changed hsize_t type in H5PartSetViewIndices; fixes to the build system; fixed bugs that were preventing the use of H5PartSetView during writes; added open object checks to regression test 2010-02-10 23:33:32 +00:00
Marc Howison 181c03008f major changes in preparations for 1.6 release: will add details to CHANGES 2010-02-10 01:02:14 +00:00
Marc Howison 7c4126c2c8 integrated changes to iterators from Allen; refactored the HDF 1.6 vs. 1.8 API #ifs 2010-01-14 21:25:29 +00:00
Marc Howison 90c6032c34 fixed type id leaks found by Allen 2010-01-11 21:29:26 +00:00
Marc Howison f40afd9670 fixed H5Oget_info() bug from Allen 2010-01-11 20:37:05 +00:00
Marc Howison c8b49c520f fixed attribute read functions to use string type 2010-01-06 00:12:55 +00:00
Marc Howison a65e9586c5 fixed string attribute bug reported by Allen Sanderson 2010-01-05 23:26:23 +00:00
Marc Howison 3c6065e2f9 flags are now stored in H5PartFile struct; added the 'throttle' as a runtime parameter instead of a compiler flag; merged H5Bench into the tests suite; compiles but need to perform regression tests 2009-10-16 22:37:20 +00:00
Marc Howison c3cd4d7c99 set collective mode as default for H5Part 2009-10-12 22:13:19 +00:00
Marc Howison fdd69338ea updated doxygen groups for H5(Multi)Block 2009-10-07 18:12:03 +00:00
Marc Howison 5d4d62f5c2 typo in Fortran linkage; fixed doxygen to use parallel flag 2009-10-06 17:58:39 +00:00
Marc Howison 195d58693a added throttling for reading 2009-09-10 04:45:48 +00:00
Marc Howison d149d8a5dd added write throttling for large concurency jobs with MPI-POSIX VFD 2009-09-10 02:49:59 +00:00
Marc Howison 8dac86872b added a proc shift option to H5MultiBlock, used in I/O benchmarking to defeat caching 2009-08-30 18:02:04 +00:00
Marc Howison 15ad7b21c5 added MPI_Comm_f2c in Fortran-C bindings 2009-08-25 17:40:49 +00:00
Marc Howison 1b8073b82b added API calls for int32 and float32 step attribs 2009-08-18 15:47:50 +00:00
Marc Howison 06aef8a08f fixed bug in halo exchange when there is only one proc in the direction of the exchange 2009-07-10 21:34:44 +00:00
Marc Howison 57ce44db8b fixed format flag for H5MultiBlock timing output 2009-07-09 01:36:26 +00:00
Marc Howison 1104b9ff93 added timing output for H5MultiBlock reads 2009-07-08 20:14:56 +00:00
Marc Howison 01aa167339 changes to _H5Block_init so that only 1 dataset creation plist is created and reused 2009-07-06 21:31:42 +00:00
Marc Howison cd0391db7e added a test for existing datasets to write calls 2009-07-06 21:07:30 +00:00
Marc Howison 207e49716c Implemented two halo exchange routines: one uses an MPI vector datatype and the other manually packs and unpacks the send and recv buffers. The MPI datatype method is not currently working due to a "double free" error in libc. The manual buffering method has been debuged and works. 2009-07-06 16:42:03 +00:00
Marc Howison 97a14cc488 fixed Fortran compile error with gfortran (had to move f90 files to F90) 2009-07-02 18:46:06 +00:00
Marc Howison 13d7784c44 added file open flags for Fortran interface 2009-07-02 18:22:30 +00:00
Marc Howison 00b0e87f10 forgot to remove existing write attrib functions from H5BlockF.inc and H5BlockF.c after adding them to the code generator 2009-07-02 17:06:12 +00:00
Marc Howison 6d38bf442d * H5Block: added attribute writing functions to code generator: still need to add reading functions 
* H5MultiBlock: added halo exchange routine: still needs debugging
 2009-07-02 16:46:07 +00:00
Marc Howison 3d4da8653a fixed bug with layout debug info always printing the layout for proc 0 2009-06-24 18:45:23 +00:00
Marc Howison 0e853656cd * fixed bug in h5bl_defin3dchunkdims call that was using variables addresses ins 
* added new MultiBlock module that is used for efficiently loading regular
rectilinear grid blocks (using chunking) and handling ghost zones in a
distributed-memory environment
** still need to add the "halo exchange" routine for reshuffling ghost regions
** performed some basic testing of read/write functionality

~Mark
 2009-06-24 18:11:39 +00:00
Marc Howison 3d1ed0e92a found incorrect == comparison with read flag; replaced with & 2009-06-19 22:34:22 +00:00
Marc Howison b5e3756f57 fixed bug in H5Gopen2 where I was using the wrong group id 2009-06-19 18:34:57 +00:00
Marc Howison 122e913f08 Merged changes from LBL, including: 
* read/write call variants for different datatypes
* HDF5 properties tuned for lustre filesystems and the Cray XT (enabled using flags passed during file open)
* HDF5 chunking for field data
* HDF5 alignment (set during file open)
* support for both HDF5 1.6 and 1.8 using #if statements
* a new error reporting level: debug_detail (HDF5 errors are now printed at debug level 1 by default)

These changes have undergone limited testing.
I will begin using this version for my H5Part projects so that I can test it more thoroughly.

~Mark
 2009-06-18 20:29:02 +00:00
gsell a2d2a02cd2 branch new development verson 2008-06-24 19:04:45 +00:00
gsell 249117c89e serial and parallel code merged 2008-06-24 18:59:06 +00:00
gsell 463ef08da9 branch stable 1.4 version 2007-09-21 09:53:26 +00:00
Kurt Stockinger 607d1e86ab Corrected version number 2007-08-29 01:59:47 +00:00
Kurt Stockinger 3ebc9de7a9 Prepare new tag with updates on H5Block. 2007-08-29 01:26:50 +00:00
gsell d8ce890902 src/H5Block.c 
_normalize_partition()
	* wrong type for 'x' fixed
_open_block_group()
_open_field_group()
	* 'herr' type error fixed
_select_hyperslab_for_reading()
	* 'herr' type error fixed
	* type cast boundaries to 'hsize_t'
_create_field_group()
	* 'herr' type error fixed
H5BlockWriteFieldAttrib()
	* type cast 'attrib_type' to 'hid_t'
H5Block3dSetFieldOrigin()
H5Block3dGetFieldSpacing()
	* type cast 'H5PART_FLOAT64' to 'hid_t'
 2007-07-12 09:50:42 +00:00
gsell b191ac7a6a src/H5Part.c 
- H5PartDefineStepName()
	* type cast 'width'
- _H5Part_iteration_operator()
	* type cast error return
- _H5Part_get_object_name()
	* type cast of arg 'idx' and 'len_obj_name' added
- H5PartGetDatasetInfo()
	* type of 'herr' changed from 'herr_t' to 'h5part_int64_t'
- _get_diskshape_for_reading()
 	* 'CHECK_FILEHANDLE()' removed
	* type cast error return to 'hid_t'
- _get_memshape_for_reading()
 	* 'CHECK_FILEHANDLE()' removed
	* type cast error return to 'hid_t'
 2007-07-12 09:15:21 +00:00
gsell 356f7149c5 src/H5Part.c 
- _read_data()
	* type error fixed
- H5PartAbortErrorHandler()
	* type cast exit code
- H5PartSetVerbosityLevel()
	* type cast 'level' to 'unsigned int'
 2007-07-11 15:34:15 +00:00
gsell a0dd21b79e src/H5Part.c 
- _H5Part_set_step()
	* revert use of 'snprintf()' (Windows doesn't have it!)
 2007-07-11 15:10:06 +00:00
gsell 08ce0ee46a src/H5Part.c 
- _H5Part_get_attrib_info():
	* type cast 'attrib_type' in call to '_H5Part_write_attrib()'
- H5PartWriteStepAttrib()
	* change type of 'herr' to 'h5part_int64_t'
	* type cast 'attrib_type' in call to '_H5Part_write_attrib()'
- H5PartWriteFileAttrib()
	* change type of 'herr' to 'h5part_int64_t'
	* type cast 'attrib_type' in call to '_H5Part_write_attrib()'
- H5PartGetStepAttribInfo()
  H5PartGetFileAttribInfo()
  H5PartReadStepAttrib()
  H5PartReadFileAttrib()
	* change type of 'herr' to 'h5part_int64_t'
- _H5Part_set_step()
	* use 'snprintf()' instead of 'sprintf()'
 2007-07-11 15:06:49 +00:00
gsell 7085e22448 src/H5PartTypes.h 
- revert last change
 2007-07-11 14:58:20 +00:00
gsell 74a31f9b8f src/H5Part.c 
- several implicit type conversions fixed
 2007-07-11 14:37:39 +00:00
gsell a38a56865f src/H5PartTypes.h: 
- change type 'stepno_width' in 'struct H5PartFile' from 'int' to
  'h5part_int64-t'
 2007-07-11 14:35:51 +00:00
Kurt Stockinger 1a20e25a84 Added nSteps as command line parameter 2007-07-10 22:41:55 +00:00
gsell 43ff5d2ca0 src/H5PartF90.inc 
- declarations for open in append mode functions added
 2007-06-29 10:02:04 +00:00
gsell 8080f5e2e5 src/H5PartF.c 
- h5pt_opena() open in append mode added
- h5pt_opena_par() open in append mode paralell version added
 2007-06-29 10:01:06 +00:00
Kurt Stockinger 4f870ccbf7 Fixed H5PartGetDatasetInfo. 2007-06-27 23:12:51 +00:00
gsell e6364c637d src/H5BlockF.c 
* correct macro definition of FORTRAN library names for field spacing/origin attribute
 2007-06-16 21:35:37 +00:00
gsell 28c0ac78ad src/H5BlocF90.inc 
* declaration of h5bl_3d_{g,s}et_field_origin() added
 2007-06-14 15:13:26 +00:00
gsell a642074d85 src/H5Block.c 
* Attribute name for field spacing renamed from "Spacing" to "__Spacing__"
* Attribute name for field origin renamed from "Origin" to "__Origin__"
 2007-06-14 15:12:22 +00:00
gsell e962caf1b9 src/H5BlockF.c 
* h5b_3d_set_field_origin() and h5b_3d_get_field_origin() added
* wrong types in h5b_3d_{g,s}et_field_spacing fixed
 2007-06-14 15:10:37 +00:00
gsell 8cad5e3aea src/H5BlockF.c 
* h5b_3d_set_field_spacing() and h5b_3d_get_field_spacing() added
 2007-06-13 12:33:38 +00:00
gsell a2dfad7b69 src/H5BlockF90.inc 
* Declarations to set/get field spacing functions added
 2007-06-13 12:32:33 +00:00
Kurt Stockinger 15c2e1260a Removed trailing backslash. 2007-06-12 16:39:03 +00:00
gsell 655511a02a src/H5Block.c 
* Documentation added
 2007-06-12 09:59:35 +00:00
gsell 0231ece31b src/H5Block.h 
* Obsolete declarations removed
 2007-06-12 08:40:58 +00:00
Kurt Stockinger b64ddd03d1 Added MPI-IO for large block I/O + switch for COLLECTIVE/NON-COLLECTIVE IO. 2007-06-08 17:02:17 +00:00
Kurt Stockinger 853837477e Fixed wrong include file and variable types. 2007-06-07 00:35:31 +00:00
Kurt Stockinger 4956504d17 Fixed dataset name in _get_field_info 2007-06-06 23:47:27 +00:00
gsell e4c8f743ae src/H5Block.c 
* doxygen documentation added
 2007-06-06 09:30:05 +00:00
gsell df627138dc src/H5Part 
* _H5Part_open_file()
	- set f->comm to 0 in serial caseI_COMM_WORLD;
 2007-06-06 09:29:04 +00:00
gsell a4e77a138a doc/Makefile.am: web-pages removed 2007-05-21 13:29:31 +00:00
gsell 9a09f11631 undelete 2007-05-21 13:28:49 +00:00
gsell 783a1ce2b5 Web-pages moved to new repo "H5Webpages" 2007-05-21 12:57:37 +00:00
gsell c43f785ab0 src/H5Block.c 
- more doxygen doc added
 2007-05-17 16:30:37 +00:00
gsell e1a18b62e2 src/H5Part.h 
- function H5PartHasStep() added
 2007-05-17 16:29:08 +00:00
gsell 3ae60f8e46 src/H5Part.c 
- _H5Part_open_file()
		* allocate mem for pnparticles in any case
	- H5PartHasStep()
		* function added
 2007-05-17 16:28:24 +00:00
gsell 949505517c doc/H5X_File_Format.txt 2007-05-15 15:59:42 +00:00
gsell ae9fd98dac src/H5PartTypes.h 
- "typdef" typo fixed in WIN32 section
 2007-05-11 16:05:59 +00:00
gsell 70bc6af59f test/H5BlockTestAttributes.c 
- include mpi.h removed if PARRALLEL_IO
	- typedef MPI_Comm removed if not PARALLEL_IO
 2007-05-10 20:37:34 +00:00
gsell 825322c576 src/H5Part.c 
- some type-casts added
	- internal error variable '_errno' renamed to '_h5part_errno'
 2007-05-10 19:18:00 +00:00
gsell 58bd753fad src/H5Block.c 
- type cast all malloc's
 2007-05-10 19:15:22 +00:00
gsell 904e609377 src/H5Part.h 
- don't wrap system include files in 'extern "C"'
 2007-05-10 19:13:36 +00:00
gsell d1b594a788 src/H5Part/Types: 
- tydef of int64_t added for Windows
 2007-05-10 19:08:32 +00:00
gsell 3bafbc6029 continue writing 2007-05-10 15:03:37 +00:00
gsell 8d760dc264 configure.ac: incr version number to 1.3.3 and bug-report address changed 2007-04-25 07:21:56 +00:00
Kurt Stockinger 4546846f06 Delete all files are benchmark is done. 2007-04-24 22:48:53 +00:00
Kurt Stockinger 62c46dc8bf Minor documentation updates. 2007-04-24 21:57:28 +00:00
gsell 9516e493bc doc/Downloading 
- fix links to software
	- HDF5 build instructions removed
 2007-04-20 12:00:40 +00:00
gsell 9df1d56714 doc/BuildingHDF5.html 
- SSI statements removed
	- bgcolor removed
 2007-04-20 11:59:54 +00:00
gsell 98e1055b7b doc/UsingC.html 
doc/UsingF.html
	- SSI statements removed
 2007-04-20 11:58:58 +00:00
gsell 436cce16c7 doc/H5PartTools.html 
- SSI statements removed
	- bgcolor removed
 2007-04-20 11:57:57 +00:00
gsell ec6f30bbd8 - doc/H5X_File_Format.txt 
* added
 2007-04-20 08:33:47 +00:00
Kurt Stockinger d356142bc4 Commented out some dead links. 2007-04-19 22:06:53 +00:00
Kurt Stockinger 00c9b0804b Updated doxygen information. 2007-04-19 21:43:57 +00:00
gsell 172ceff05a doc/Downloading.html 
- update H5Part download instructions
 2007-04-19 15:17:57 +00:00
gsell 030985c9a4 test 2007-04-19 10:39:00 +00:00
gsell 359b699464 test 2007-04-19 10:31:09 +00:00
gsell 6e1ce25417 - testfile removed 2007-04-19 10:25:20 +00:00
gsell 4144c2b696 src/H5Part.c 
* H5PartOpenFileParallel()
		- MPI hints removed, they are useless
		- delegate real work to new function "_H5Part_open_file()"
	* H5PartOpenFile()
		- delegate real work to new function "_H5Part_open_file()"
	* _H5Part_open_file()
		- new function perfoming the real work
		- set step name and number format in file structure
	* H5PartDefineStepName()
		- new function to define step name and format of step number
	* _H5Part_set_step()
	* H5PartGetNumDatasets()
	* H5PartGetDatasetName()
	* H5PartGetDatasetInfo()
	* _H5Part_get_num_particles()
		- use step name und step number format defined in file struct
 2007-04-19 10:15:34 +00:00
gsell bad33a75d2 src/H5Part.h 
- function declaration "H5PartDefineStepName()" added
 2007-04-19 09:26:54 +00:00
gsell 7240f26378 - typdef for MPI_Comm add in non-parallel case 
- "struct H5PartFile" extended:
	* new member for step name
	* new member to specify the format of the step number
	* new member to flag whether the file is still empty
 2007-04-19 09:17:34 +00:00
gsell b9d82c2fda - build of "homdynToH5p" removed 2007-04-19 09:06:27 +00:00
gsell 1bdd5268ed - "homdynToH5p" from tools build list removed 2007-04-19 09:00:23 +00:00
adelmann 92e057e4cf Add MPI IO hints according to the Benchmark.c program by R. Geus given to me by Valerie 2007-02-13 04:30:55 +00:00
gsell aa72af797b testtest 2007-02-12 21:26:45 +00:00
gsell 9974b6b44c srv/H5Part.c 
_H5Part_get_attrib_info():
		- code optimization
 2007-01-25 13:09:42 +00:00
Christina Siegerist 82c594c17d Made the new api changes again. They were probably lost in overlapping 
commits.
 2006-12-07 18:48:41 +00:00
gsell c96b859f88 configure.ac 
- forgot to check MPIPATH
 2006-12-07 16:48:40 +00:00
gsell d580292235 configure.ac 
- check in this order: MPIROOT, MPIHOME, --with-mpipath, other paths
- same for HDF5ROOT
 2006-12-07 16:46:51 +00:00
gsell 4dd379ff2f src/H5Part.c 
_H5Part_iteration_operator():
		- call H5Gget_objinfo() only if type != H5G_UNKNOWN
	H5PartGetNumSteps():
		- count all objects beginning with H5PART_GROUPNAME_STEP
		  not only groups
 2006-12-06 10:50:26 +00:00
gsell e13c4e8d8d configure.ac 
- more cosmetic changes (--enable-xxx and --with-xxx definitiona
  are now at the very top, so you see all available options all together)
 2006-12-02 22:35:19 +00:00
gsell 4d0ffd58df configure.ac 
- configure aborts, if HDF5 cannot be found
- ADDFLAFS merged into FFLAGS
- several cosmetic changes
 2006-12-02 17:55:41 +00:00
gsell b105b19d4d src/H5Part.c 
- _set_view(): "end" is now inclusive
 2006-12-02 17:53:32 +00:00
gsell f0d51def4e test/Makefile.am 
- ADDFLAGS removed: content of ADDFLAGS is now in FFLAGS
 2006-12-02 17:51:46 +00:00
gsell 5325a7a24f Test 2006-12-01 13:02:39 +00:00
gsell 9c6d4e48a3 Test 2006-12-01 13:01:13 +00:00
gsell 150f623c03 Test 2006-12-01 12:56:37 +00:00
gsell 14536c6d84 Test 2006-12-01 12:56:26 +00:00
gsell 94779f185f Test 2006-12-01 09:46:39 +00:00
gsell 07ff9e52ef test bla 2006-12-01 09:43:03 +00:00
adelmann 4de6c55220 Add unit attributes and fix units 2006-11-28 09:22:27 +00:00
gsell e21e1bf4f4 "homdynToH5p" added to tools 2006-11-27 15:09:41 +00:00
gsell 42e023ea71 set version number to 1.3.1 2006-11-27 14:52:29 +00:00
adelmann 7a7a90b5df Initial update 2006-11-13 20:00:07 +00:00
gsell cf40adf301 src/addToDoxygenMainPage.h 
- removed (content moved to "H5Part.c")
test/H5ecloudExample.cc
src/H5Units.h
src/H5Part.cc
src/H5Part++.hh
src/H5Part.hh
src/H5Part++.cc
tools/h5pToGNUplot.py
	- removed
doc/Makefile.am
	- added
doc/H5tools/H5tools.htm
	- renamed to "doc/H5tools/H5tools.html"
 2006-10-27 15:13:31 +00:00
gsell cc383bff11 src/H5Block.c 
- doxygen:
		* group "h5block_api" renamed to "h5block_c_api"
		* documentation added/revised
	- _allgather()
		* defined static
	- unused code "#if OLD_DISSOLVE_GHOSTZONES" removed
	- Macro "H5BLOCK_GROUP_NAME" replaced with "H5BLOCK_GROUPNAME_BLOCK"
 2006-10-27 15:10:11 +00:00
gsell 712bbf30b2 src/H5Part.c 
- doxygen group "h5part_api" renamed to "h5part_c_api"
	- default error-handler renamed to "H5PartReportErrorHandler"
	- macro "H5PART_PARTICLES_GROUP" replaced with "H5PART_GROUPNAME_STEP"
 2006-10-27 15:00:13 +00:00
gsell 1b55e6c536 src/H5PartPrivate.h 
- time-steps renamed from "Particles" to "Steps".
	- the macro defining the groupname of time-steps is now
	  "H5PART_GROUPNAME_STEP"
 2006-10-27 14:57:02 +00:00
gsell 615cbf3bbd src/H5BlockPrivate.h 
- "H5BLOCK_GROUP_NAME" renamed to "H5BLOCK_GROUPNAME_BLOCK"
 2006-10-27 14:54:02 +00:00
gsell a5e5d3f2a8 test/H5BlockParTestScalarFieldF.f90 
- interface definition for "IARGC()" added, pgi-fortran
	  complains about this (intrinsic!) function.
 2006-10-27 14:52:54 +00:00
gsell 4d2b43576f test/Makefile.am 
- several changes to "EXTRA_DIST"
 2006-10-27 14:48:50 +00:00
gsell bcf06f51b1 src/H5Part.h 
- H5PartDefaultErrorHandler:
		* renamed to "H5PartReportErrorHandler"
 2006-10-27 14:46:57 +00:00
gsell f065eccdc4 src/Makefile.am 
- several changes to "EXTRA_DIST", "include_HEADERS", "EXTRA_HEADERS",
	  "libH5PartF_a_SOURCES"
 2006-10-27 14:14:38 +00:00
gsell 49df069686 configure.ac 
- AC_INIT: Version number changed to "1.3.1"
	- AC_PROG_FC: "gfortran" added to list
	- option "--enable-mpipath" changed to "--with-mpipath"
	- option "--enable-hdf5path" changed to "--with-hdf5path"
	- set env.variable "FC" to "MPIFC" if "MPIFC" is set
	- "H5BlockDissolveGhosts" removed from TTARGET
	- AC_CONFIG_FILES: "doc/Makefile" added
 2006-10-27 14:08:44 +00:00
gsell 6ad99f01cd Makefile.am 
- doc added to list SUBDIRS
 2006-10-27 14:02:35 +00:00
gsell 67ffffae9d src/H5BlockF.c 
- h5bl_get_partition_of_proc()
		* bugfix: we have to increment the values by 1
 2006-10-10 15:59:08 +00:00
gsell ddd7c0f0bd test/H5BlockParTestScalarFieldF.f90 
- read_field()
		* bugfixes
 2006-10-10 15:57:07 +00:00
gsell bef930c76b src/H5Block.c 
- H5BlockDefine3dLayout()
		* debug-print user layout
 2006-10-10 15:49:39 +00:00
Christina Siegerist 78add071f1 changed to September 2006 2006-10-02 20:50:00 +00:00
Christina Siegerist c7e88d59af Changed to email to andreas to avoid svn wrong addresses. 2006-10-02 20:47:52 +00:00
adelmann cb9ba14d80 delcared IARGC 2006-09-29 04:26:29 +00:00
gsell 791a9be790 test/H5BlockParTestScalarFieldF.f90 
- read_field()
		* bugfix in calculation of expected value
 2006-09-29 00:19:09 +00:00
gsell ac632c5ed4 src/H5PartF.c 
- h5pt_set_verbosity_level()
		* bugfix: level was not a pointer
 2006-09-29 00:01:41 +00:00
gsell 146d0cd28d test/H5BlockParTestScalarFieldF.f90 
- more layout fixes
 2006-09-28 23:44:35 +00:00
gsell 415c037076 test/H5BlockParTestScalarFieldF.f90 
- more layout fixes
 2006-09-28 23:39:19 +00:00
gsell 3653baecd0 test/H5BlockParTestScalarFieldF.f90 
- more layout error fixed
 2006-09-28 23:32:10 +00:00
gsell 2e6ec2fe01 test/H5BlockParTestScalarFieldF.f90 
- bugfixes in layout
 2006-09-28 23:22:07 +00:00
gsell cab19eece1 test/H5BlockParTestScalarFieldF.f90 
- added
 2006-09-28 22:47:51 +00:00
gsell 5b50d9b362 configure 
- H5BlockParTestScalarFieldF
		* added to parallel, fortran TTARGET
 2006-09-28 22:42:17 +00:00
gsell 6c4c222f4d src/H5BlockF.c 
- h5bl_get_reduced_partition_of_proc()
		* bugfix: we have increment the value by one
	- h5bl_get_proc_of()
		* bugfix: we have to decrement the value by one
 2006-09-28 22:41:15 +00:00
gsell e76b2ed356 src/H5BlockF90.inc 
- h5bl_get_partition_of_proc()
	  h5bl_get_reduced_partition_of_proc()
		* bugfix in declaration, proc was missing
 2006-09-28 22:38:18 +00:00
gsell b64f8ad80e test/Makefile.am 
- rules to build "H5BlockParTestScalarFieldF" added
 2006-09-28 22:36:41 +00:00
gsell de7c07e47f src/H5PartF.c 
- attribute interface
		* bugfixes, was completly messed up, what did I do?
 2006-09-28 19:02:41 +00:00
gsell 1b10ffe18b src/H5PartF90.inc 
- declare dimensions of arrays as (*) not (:)
 2006-09-28 16:59:49 +00:00
gsell 489110ba92 Hdf5fed moved to own repo 2006-09-27 20:55:14 +00:00
gsell 2c4d12b36c test 2006-09-27 19:57:35 +00:00
gsell dbdb76fff7 test 2006-09-27 19:57:05 +00:00
adelmann 634ed00d24 add merlin00 configure 2006-09-27 19:13:20 +00:00
gsell ac6f828fbc src/H5PartPrivate.h 
- _H5Part_set_step()
		* was static and is public now
 2006-09-27 04:45:49 +00:00
gsell 14f0702eee src/H5PartF.c 
- h5pt_openpar_r()
	  h5pt_openpar_w()
		* bugfix: arg "comm" as been pass as pointer instead of value
 2006-09-27 04:44:39 +00:00
gsell e4c712e067 src/H5Part.c 
- _H5Part_set_step()
		* was static is public now
 2006-09-27 04:42:09 +00:00
adelmann 9e6208836e add howto for GELE the small Crat XT3 system 2006-09-27 04:10:51 +00:00
gsell c43e918ddc doc/doxyfooter 
- added
 2006-09-26 23:39:01 +00:00
gsell 353689b4eb src/H5Part.c 
- grouping function in doxygen groups
 2006-09-26 23:33:04 +00:00
gsell bf22238a3e src/H5Block.c 
- grouping of functions in doxygen groups
	- moved doc from "H5Block.h"
 2006-09-26 23:09:00 +00:00
gsell 9c73b23b48 src/H5Block.h 
- part of doxygen doc moved to "H5Block.c"
 2006-09-26 23:07:08 +00:00
gsell 9c3040e429 doc/Doxyfile 
- several changes to get a better layout and structure
 2006-09-26 23:05:37 +00:00
gsell 4f96e94098 doc/ReferencePages 
- removed, can be generated with Doxygen
 2006-09-26 04:45:04 +00:00
gsell 84cc3c7a19 doc/hdf5.pdf 
- moved to repo "H5Papers"
 2006-09-26 04:43:04 +00:00
gsell 56f13c3b68 doc/2006-Berkeley-Visit 
doc/H5xxx
	- moved to repo "H5Memo"
 2006-09-26 04:41:46 +00:00
gsell 70d1a26d4c test/H5BlockTestAttributes.c 
- tests for "H5Bloc3d{Set,Get}Field{Spacing,Origin}() added
 2006-09-25 23:20:50 +00:00
gsell 980a192922 src/H5PartPrivate.h 
- _H5Part_set_step()
		* declaration added
 2006-09-25 23:02:40 +00:00
gsell bef9820f71 src/H5Part.c 
- H5PartSetNumParticles()
		* fix undeclared var error in parallel code
	- _set_step()
		* renamed to "_H5Part_set_step()"
 2006-09-25 23:01:28 +00:00
gsell 6e32226992 src/H5Part.c 
- use "-1" to indicate an uninitialized "timegroup" in "H5PartFile"
	  a valid "timegroup" is greater or equal zeros
	- _set_step()
		* added, derived from "H5PartSetStep()"
	- H5PartSetStep()
		* call "_set_step()" to do the real work
	- _H5Part_get_num_particles()
		* added, derived from "H5PartGetNumParticles()"
	- H5PartGetNumParticles()
		* call "_H5Part_get_num_particles()" to do the real work
	- H5PartSetNumParticles()
		* use new function "_set_step()" instead of "H5PartSetStep()"
		* print no extra error message if "_set_step()" returns
		  with an errror
	- _reset_view()
		* added, derived from "H5PartSetView()"
	- H5PartResetView()
		* added, was a macro before
	- H5PartHasView()
		* added, was a macro before
	- _set_view()
		* added, derived from "H5PartSetView()"
		* "#ifdef HDF5V160" block removed
	-  H5PartSetView()
		* call "_set_view()" to do the real work
	- H5PartGetView()
		* use vars "viewend" and "viewstart" to instead "range[0]"
		  and range[1]
		* call "_set_step()" if timegroup not initialized
	- H5PartSetCanonicalView()
		* check whether we are in read-only mode replaced with macro
		* "_reset_view()" used instead of "H5PartSetView(f,-1,-1)
 2006-09-25 20:05:47 +00:00
gsell 1d011f5482 src/H5PartErrors.h 
- macro CHECK_READONLY_MODE added
 2006-09-25 19:23:18 +00:00
gsell 0b151cd0aa src/H5Part.h 
src/H5Part.c
	- H5PartOpenFile()
	  H5PartOpenFileParallel()
		* "const" qualifier added to arg "flags"
	- H5PartReadDataInt64()
		* "const" qualifier added to arg "name"
      	- H5PartResetView()
	  H5PartHasView()
		* are real function now, not macros any more
 2006-09-25 19:22:26 +00:00
gsell e560303db3 src/H5Block.c 
- unused code between #if 0 ... #endif removed
	- _dissolve_ghostzones()
		* faster algorithm implemented
 2006-09-25 19:17:23 +00:00
gsell 591a37855d src/H5PartPrivate.h 
- _H5Part_get_num_particles()
		* declaration added
 2006-09-25 19:15:13 +00:00
gsell 8cedb2d7f5 test/H5BlockDissolveGhosts.c 
- _dissolve_ghostzones()
		* faster algorithm implemented
 2006-09-25 19:14:08 +00:00
Patrik Leidenberger df20b6e0ea Restructure the Hdf5fed directory. 2006-09-25 12:41:31 +00:00
Patrik Leidenberger 6f34b0a4c5 Restructure the Hdf5fed directory. 2006-09-25 09:57:32 +00:00
Patrik Leidenberger 43000dabe1 Restructure the Hdf5fed directory. 2006-09-25 09:55:50 +00:00
Patrik Leidenberger 40a9898f92 Restructure the Hdf5fed directory. 2006-09-25 09:47:15 +00:00
Patrik Leidenberger 5bd504becf Restructure the Hdf5fed directory. 2006-09-25 09:45:56 +00:00
Patrik Leidenberger 9a16c66724 Restructure the Hdf5fed directory. 2006-09-25 09:34:15 +00:00
Patrik Leidenberger 83f931607b Restructure the Hdf5fed directory 2006-09-25 09:31:11 +00:00
Patrik Leidenberger ad79b097d2 Hdf5fed little update. 2006-09-25 08:20:38 +00:00
Patrik Leidenberger 24a080298d H5Fed: Add function for triangle boundary. 2006-09-24 17:04:05 +00:00
Patrik Leidenberger 0e2cc3ec8c Addaped H5Fed api to Dune. 2006-09-24 12:15:09 +00:00
gsell bb7f1c5f38 src/H5PartF.c 
- h5pt_openr_par()
		* fixed typo
	- h5pt_openw_par()
		* fixed typo
 2006-09-22 22:59:54 +00:00
gsell bb15e96150 src/H5Block.h 
- H5BlockGetFieldInfoByName()
		* added
	- H5Block3dGetFieldOrigin()
		* added
	- H5Block3dSetFieldOrigin()
		* added
	- H5Block3dGetFieldSpacing()
		* added
	- H5Block3dSetFieldSpacing()
		* added
 2006-09-22 22:55:40 +00:00
gsell 2217b10b01 src/H5Block.c 
- H5Block3dWriteScalarField()
	- H5Block3dReadScalarField()
		* dataset renamed from "x" to "0"
	- H5Block3dWrite3dVectorField()
	- H5Block3dRead3dVectorField()
		* datasets renamed from "x", "y", "z"  to "0", "1", "2"
	- _get_field_info()
		* added, derived from "H5BlockGetFieldInfo()"
	- H5BlockGetFieldInfo()
		* call "_get_field_info()" to do the real work
	- H5BlockGetFieldInfoByName()
		* added
	- _write_field_attrib()
		* defined as static function, was non-static
	- _read_field_attrib()
		* added, derived form "H5BlockFieldReadAttrib()"
	- H5BlockReadFieldAttrib()
		* call "_read_field_attrib()" to do the real work
	- H5Block3dGetFieldOrigin()
		* added
	- H5Block3dSetFieldOrigin()
		* added
	- H5Block3dGetFieldSpacing()
		* added
	- H5Block3dSetFieldSpacing()
		* added
 2006-09-22 22:53:46 +00:00
gsell b66e4587f5 src/H5BlockF.c 
- include "H5PartPrivate.h" added
	- include <hdf5.h> removed
 2006-09-22 22:45:23 +00:00
gsell 06530aff19 src/H5Part.c 
- H5PartSetStep()
		* fix conversion to different size in debug output
 2006-09-22 22:44:08 +00:00
gsell 7f2cb8bcaf test/Makefile.am 
- bugfix in rule to build "H5test"
 2006-09-22 22:42:28 +00:00
gsell 49022b6838 test/H5test.cc 
- empty PARALLEL_IO conditional part removed
 2006-09-22 22:41:30 +00:00
gsell 1b15551170 src/H5Part.c 
- declare arguments as "const" where possible
 2006-09-22 20:55:23 +00:00
gsell 09fc6fd570 src/H5PartPrivate.h 
- _H5Part_strdupfor2c()
	- _H5Part_strc2for()
		* added
 2006-09-22 20:54:34 +00:00
gsell db0a1bd448 src/H5Part.h 
- declare arguments as "const" where possible
 2006-09-22 20:53:36 +00:00
gsell 921746273d src/H5Block.c 
- printf for debug output removed
 2006-09-22 20:52:12 +00:00
gsell 990a359f14 src/H5BlockF90.inc 
- h5bl_3d_write_scalar_field()
	- h5bl_3d_write_3dvector_field()
	- h5bl_3d_read_3dvector_field()
		* bugfix in type of data
 2006-09-22 20:51:05 +00:00
gsell b3da7610f1 src/H5PartF.c 
src/H5BlockF.c
	- use Fortron function name in definition, define macros for
	  function names only, if we have to rename them
	- use function "_H5Part_strdupfor2c()" and "_H5Part_strc2for()" 
	  for string conversion
 2006-09-22 20:49:17 +00:00
gsell 9e9f2fdb9a test/H5BlockTestAttributesF.f90 
- write file and attributes implemented
 2006-09-22 20:31:59 +00:00
Patrik Leidenberger cf14e818db Extension of the H5Fed API and adding a dump program to test the API. 2006-09-22 13:30:03 +00:00
gsell cdf1ce5e9d src/H5BlockF90.inc 
- all (:,:,:) and (:) changed to (*)
 2006-09-21 23:48:36 +00:00
gsell 0ca05f63a0 src/H5BlockF.c 
- h5bl_readfieldattrib_*
		* bugfix: C function has not been called with copy
 2006-09-21 23:46:18 +00:00
gsell cb4bceb4bb src/H5Block.c 
- some debug print removed
 2006-09-21 23:44:39 +00:00
gsell c40ae0bb4e test/H5BlockTestAttributesF.f90 
- attribute read tests added
 2006-09-21 23:43:22 +00:00
gsell 90c2a260c2 src/H5BlockTestAttributes.c 
- bugfixes
 2006-09-21 21:26:46 +00:00
gsell 4f423dbdda test/H5BlockTestAttributesF.f90 
- more coding
 2006-09-21 21:26:01 +00:00
gsell 624edd3be3 test/Makefile.am 
- rule to build "H5BlockTestAttributesF"
		* link to non-parallel versions of the library
 2006-09-21 21:25:17 +00:00
gsell f698ae762e src/H5Part.c 
- H5PartOpenFileParallel()
		* debug-print info about file also in non-parallel case
		* print value of "f" not "f->file" 
	- H5PartOpenFile()
		* print value of "f" not "f->file"
 2006-09-21 21:23:28 +00:00
gsell 782d67c1a0 src/H5PartF.c 
- f_h5pt_openr()
		* type-cast result to get rid of the warning
 2006-09-21 21:21:07 +00:00
gsell 51560ad3fa src/H5Block 
- several debug-prints added
 2006-09-21 21:16:41 +00:00
gsell e35679ba56 src/H5BlockF90.inc 
- h5bl_getfieldinfo()
		* syntax error fixed
 2006-09-21 21:15:55 +00:00
gsell f45fb3f465 src/H5BlockF.c 
- all function
		* type of file-handle changed to "h5part_int64_t"
 2006-09-21 21:13:30 +00:00
gsell 5425ae0847 configure.ac 
- prog "H5BlockTestAttributesF" moved to the non-parallel test
	  targets
 2006-09-21 21:11:42 +00:00
Patrik Leidenberger 15abcafd84 Add H5Fed changes in h5fed api. 2006-09-21 12:26:37 +00:00
Patrik Leidenberger 4c4cdc9a2f Add H5Fed. 2006-09-21 10:19:39 +00:00
gsell 8f31d8ddd5 test/H5BlockTestAttributesF.f90 
- added
 2006-09-20 21:07:25 +00:00
gsell 011128ef54 test/Makefile.am 
- rule to build target "H5BlockTestAttributesF" added
 2006-09-20 21:06:47 +00:00
gsell 333332537c configure.ac 
- prog "H5BlockTestAttributesF" added to TTARGET
 2006-09-20 21:05:52 +00:00
gsell 65470f307b test/H5BlockTestAttributes.c 
- main()
		* declaration of var "nprocs" added
 2006-09-20 21:03:42 +00:00
gsell 9647274842 src/H5PartF.c 
- f_h5pt_set_verbosity_level()
		* added
	- f_h5pt_getstepattribinfo()
	  f_h5pt_getfileattribinfo()
		* type of var "type" changed from "hid_t" to
		  "h5part_int64_t"
 2006-09-20 21:02:23 +00:00
gsell 76549133c4 src/H5PartF90.inc 
- declaration of "h5pt_set_verbosity_level()" added
 2006-09-20 20:59:16 +00:00
gsell bf9793e18a src/H5Part.h 
- H5PartSetVerbosityLevel()
		* type of arg "level" changed from "unsigned int" to
		  "h5part_int64_t"
 2006-09-20 20:58:13 +00:00
gsell 523c2ae212 src/H5Part.c 
- H5PartSetVerbosityLevel()
		* type of arg "level" changed from "unsigned int" to
		  "h5part_int64_t"
 2006-09-20 20:57:04 +00:00
gsell c892a7c748 src/H5Part.c 
- use macro "H5PART_PARTICLES_GROUP" insteed of string
	- print_{debug,info,warn,error}()
		* prints now a prefix "D", "I", "W", "E" corresponding to
		  type of message
		* print value of "__funcname" before message text
		* print everything in one print statment
		* all calls to these functions have been change accordingly
 2006-09-20 18:00:46 +00:00
gsell 54313b4882 src/H5Block.c 
- use macro "H5BLOCK_GROUP_NAME" insteed string of "Block"
 2006-09-20 17:54:36 +00:00
gsell e6b3c12e77 src/H5BlockPrivate.h 
- macro "H5BLOCK_GROUP_NAME" added
 2006-09-20 17:53:25 +00:00
gsell cc9487757b src/H5PartPrivate.h 
- macro "H5PART_PARTICLES_GROUP" added
 2006-09-20 17:52:08 +00:00
gsell b795b592cb test/H5BlockTestAttributes.c 
- can be compiled parallel and non-parallel now
 2006-09-20 17:50:51 +00:00
gsell 26eb035ef8 test/H5BlockTestAttributes.c 
- added
 2006-09-20 01:50:04 +00:00
gsell 3c15cdf0c1 test/H5BlockWriteScalarField1Proc.c 
test/H5BlockTest1.c
test/H5BlockReadParallel1.c
test/H5BlockReadScalarField1Proc.c
test/H5BlockWrite1.c
test/H5BlockParallelTest1.c
	- removed
 2006-09-20 01:49:25 +00:00
gsell a205c9a93c src/H5Block.c 
- all "H5Block.*" functions
		* call "_init()" at the very beginning
	- all "H5Block.*" functions where a layout must be defined before
	  the function can be called
		* error check, whether layout is defined or not
 2006-09-20 01:48:03 +00:00
gsell 82c7f77e26 src/Makefile.am 
- prog "H5BlockTestScalarField" removed
	- prog "H5BlockTestAttributes" added
 2006-09-20 01:44:47 +00:00
gsell a4dd08d021 src/H5BlockTypes.h 
- struct H5BlockStrukt
		* "have_layout" added
 2006-09-20 01:43:15 +00:00
gsell 71eb102a30 src/H5BlockErrors.h 
- macro "CHECK_LAYOUT" added
 2006-09-20 01:42:09 +00:00
gsell 8aa2732876 src/H5Block.h 
- H5Block3dGetProcOf()
		* arg "f" is not "const" any more
 2006-09-20 01:41:08 +00:00
gsell b5c98e495b src/H5BlockF.c 
- f_h5bl_get_proc_of()
		* arg "f" is not "const" any more
 2006-09-20 01:40:02 +00:00
gsell 1440cd28a7 configure.ac 
- prog "H5BlockTestAttributes" added to "TTARGET"
 2006-09-20 01:38:44 +00:00
gsell 1dba6fb877 src/H5Part.h 
- bugfix: #endif was at wrong place
 2006-09-19 23:39:40 +00:00
gsell df8c5280c0 src/H5BlockF.c 
- Fortran 90 bindings coded
 2006-09-19 23:37:39 +00:00
gsell 9e6fc708f6 src/H5Block.c 
- H5BlockDefine3DFieldLayout()
		* CHECK_FILEHANDLE() added
	- H5BlockGetNumFields()
		* CHECK_FILEHANDLE() added
	- H5BlockGetFieldInfo()
		* CHECK_FILEHANDLE() and CHECK_TIMEGROUP() added
	- H5BlockGetNumFieldAttribs()
		* bugfix: return value was always 0
	- H5PartReadFieldAttrib()
		* bugfix: CHECK_FILEHANDLE was called before _init()
 2006-09-19 23:36:27 +00:00
gsell 600f887609 src/Makefile.am 
- rules to build H5Block Fortran bindings added
 2006-09-19 23:29:33 +00:00
gsell 79f6d8e19c src/H5Block.h 
- declaration of "H5BlockHasFieldData()" added
 2006-09-19 23:28:32 +00:00
gsell e893b8e448 src/H5BlockF90.inc 
- coding
	- some fixes
 2006-09-19 23:26:54 +00:00
gsell 1a623f0e81 configure.ac 
- bugfix from last check-in
	- some formating changed
 2006-09-19 23:25:30 +00:00
gsell 4d7653f2bd tools/Makefile.am 
- add $(MPIINC) to macro INC
 2006-09-19 01:25:21 +00:00
gsell 307aecaec9 tools/h5pToGNUplot.cc 
- include "H5Part.h" insteed "H5Part.hh"
	- several format string fixes
 2006-09-19 01:23:37 +00:00
gsell 06b04a75fb tools/h5pAttrib.cc 
- include "H5Part.h" insteed "H5Part.hh"
	- several format string fixes
 2006-09-19 01:23:04 +00:00
gsell 13bbd58004 src/Makefile.am 
- if parallel is enabled, only this version will be builded
	- parallel/non-parallel macros merged
	- the library name is now "libH5Part.h" for non-parallel and 
	  parallel.
 2006-09-19 01:21:18 +00:00
gsell 792ae9a597 src/H5Block.c 
- H5PartReadFieldAttrib()
		* missing error handling added after reading attribute
 2006-09-19 01:18:00 +00:00
gsell 5d9b13e15e src/H5Part.h 
- C++ wrapper added
 2006-09-19 01:16:46 +00:00
gsell b998848ed2 src/H5PartErrors.h 
- fix format string error in "HANDLE_H5PART_SET_VIEW_ERR"
 2006-09-19 01:11:17 +00:00
gsell 6e14b0aeab test/H5BlockParTestScalarField.c 
- several format string fixes
 2006-09-19 01:09:41 +00:00
gsell 8a9cdf320c test/H5test.cc 
- include "H5Part.h" insteed of "H5Part.hh"
 2006-09-19 01:08:53 +00:00
gsell 8e328d1dc5 src/H5PartTest.cc 
- include "H5Part.h" insteed of "H5Part.hh"
	- several format string fixes
 2006-09-19 01:07:54 +00:00
gsell c3f8c3e70e test/H5PartAndreasTest.cc 
- include "H5Part.h" insteed of "H5Part.hh"
 2006-09-19 01:06:18 +00:00
gsell 13660dea05 test/Makefile.am 
- parallel/non-parallel version of macros merged
	- use CC, CXX und FC insteed of MPICC, ...
 2006-09-19 01:04:42 +00:00
gsell 8608d1e63f configure.ac 
- parallel/non-parallel versions of macros merged
        - in parallel case: CC=MPICC, CXX=MPICXX und FC=MPIFC
 2006-09-19 00:58:22 +00:00
gsell 837c329840 src/H5Block.h 
- C++ wrapper added
 2006-09-19 00:53:55 +00:00
gsell ec71b9eaa6 src/H5Block.h 
- declaration of "H5Block3dGetReducedPartitionOfProc()" added
 2006-09-15 23:50:40 +00:00
gsell 27dc5819f2 src/H5Block.c 
- H5Block3dGetReducedPartitionOfProc()
		* added
	- _select_hyperslab_for_writing()
		* missing selection of hyperslab for memshape added
 2006-09-15 23:49:06 +00:00
gsell 6e3b010eff test/H5BlockParTestScalarField.c 
- return on error removed
 2006-09-15 23:45:22 +00:00
gsell c0216d2da7 test/Makefile.am 
- bugfix in rule to build "H5BlockDissolveGhosts"
 2006-09-15 23:43:17 +00:00
gsell acccf9b457 test/H5BlockDissolveGhosts.c 
- added
 2006-09-15 21:56:48 +00:00
gsell bc0499e859 src/H5Block.c 
- new algorithm for dissolving ghost-zone
 2006-09-15 21:54:58 +00:00
gsell f8f384dcc2 configure.ac 
- "H5BlockDissolveGhosts" added to parallel TTARGET
	- "H5BlockTest1" removed from serial TTARGET
 2006-09-15 21:50:10 +00:00
gsell 6008f5579e test/Makefile.am 
- rules added to build "H5BlockDissolveGhosts"
 2006-09-15 21:48:10 +00:00
gsell aa487aa4be test/H5BlockParTestScalarField.c 
- main()
		* call to "MPI_Finalize()" added
 2006-09-14 23:08:25 +00:00
gsell 8d76d9d9bd src/H5Block.c 
- _dissolve_ghostzone()
		* debug prints edited
 2006-09-14 23:07:17 +00:00
gsell ab9ee7406b test/H5BlockParTestScalarField.pbs 
- added
 2006-09-14 21:43:09 +00:00
gsell 814a9a86e7 src/H5Block.c 
_dissolve_ghostzones()
		* dissolve all ghost-zones, not only for the processor the code
		  is running on.
 2006-09-14 21:08:36 +00:00
gsell 8948598fab test/H5BlockParTestScalarField.c 
_read_data()
		* bugfix in calculating expected value
		* be more verbose in case of an error
 2006-09-14 21:05:23 +00:00
gsell dddeaeba27 - src/H5Part.c 
- H5PartOpenFileParallel()
		* in the parallel code there were some not yet
		  renamed calls to "print_debug()"
	- H5PartSetStep()
		* in the parallel code there was a not yet
		  renamed call to "print_info()"
 2006-09-14 18:23:11 +00:00
gsell 53f286b421 test/H5BlockParTestScalarField.c 
- added
 2006-09-14 16:57:24 +00:00
gsell 0975564af3 src/H5Part.c 
- H5PartWriteFileAttrib()
		* return code of "_H5Part_write_attrib()" was not assigned
		  to "herr"
	- H5PartSetView()
		* var "r" to handle error renamed to "herr" and changed
		  to type "h5part_int64_t"
 2006-09-14 16:56:29 +00:00
gsell 29efcefae3 src/H5Block.c 
- H5Block3dGetPartitionOfProc()
	  H5Block3dGetProcOf()
		* added
 2006-09-14 16:51:52 +00:00
gsell 3873af56a0 src/H5Block.h 
- H5Block3dGetPartitionOfProc()
	- H5Block3dGetProcOf
		* declaration added
 2006-09-14 16:50:37 +00:00
gsell dd75b5da79 configure.ac 
- block tests cleanup
 2006-09-14 16:48:56 +00:00
gsell 7112492fe8 test/Makefile.am 
- use of macros in most rules
	- block tests cleanup
 2006-09-14 16:47:56 +00:00
gsell 77b1b40ea9 test/H5BlockWriteScalarField1Proc.c 
test/H5BlockReadScalarField1Proc.c
	- added
 2006-09-12 22:19:39 +00:00
gsell 4f35ba1356 test/H5testFpar.f 
- renamed to "H5testFpar.f90"
 2006-09-12 22:18:58 +00:00
gsell 3dff13c491 src/configure.ac 
- add test targets to TTARGET
 2006-09-12 22:17:53 +00:00
gsell 18c2c89cd5 src/H5Block.h 
- fixed bug in declaration of "H5BlockReadFieldAttrib()"
 2006-09-12 22:16:31 +00:00
gsell 1f6d43b25d test/Makefile.am 
- rules to build "H5BlockReadScalarField1Proc" added
 2006-09-12 22:15:21 +00:00
gsell 1b2e7a1f75 2006-09-12 22:14:09 +00:00
gsell e962e9d778 test/Bench.c 
- declarations of unused variable removed
 2006-09-12 22:13:40 +00:00
gsell 1df562f90c test/Makefile.am 
- use macros in rule to build "H5testFpar", "H5testFpar.o"
      	- rules to build "H5BlockWriteScalarField1Proc" added
 2006-09-12 20:47:31 +00:00
gsell 6c1ce219d1 test/H5testFpar.f90 
- renamed, was "H5testFpar.f"
 2006-09-12 20:44:11 +00:00
gsell c039ee7322 test/BlockTestSpecs.txt 
- added
 2006-09-12 17:43:49 +00:00
gsell 41511462f9 repo migration 2006-09-11 20:19:10 +00:00
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src/Fortran/H5Block_io.c -text src/H5BlockPrivate.h -text
src/Fortran/H5Block_ioF.f90 -text src/H5BlockReadWrite.c -text
src/Fortran/H5Block_readwrite_F.c -text src/H5BlockReadWrite.f90 -text
src/Fortran/H5F.f90 -text src/H5BlockReadWrite.h -text
src/Fortran/H5Part.c -text src/H5BlockReadWriteF.c -text
src/Fortran/H5PartF.f90 -text src/H5BlockTypes.h -text
src/Fortran/H5Part_F.c -text src/H5MultiBlock.c -text
src/Fortran/H5Part_io.c -text src/H5MultiBlock.h -text
src/Fortran/H5Part_ioF.f90 -text src/H5MultiBlockErrors.h -text
src/Fortran/H5_F.c -text src/H5MultiBlockPrivate.h -text
src/Fortran/H5_attribs.c -text src/H5MultiBlockReadWrite.c -text
src/Fortran/H5_attribsF.f90 -text src/H5MultiBlockReadWrite.h -text
src/Fortran/H5_attribs_F.c -text src/H5MultiBlockTypes.h -text
src/Fortran/H5_constF.f90 -text src/H5Part.c -text
src/Fortran/Makefile.am -text src/H5Part.f90 -text
src/Fortran/TestUnderscore.f -text src/H5Part.h -text
src/Fortran/TestUnderscoreC.c -text src/H5PartAttrib.c -text
src/Fortran/h5_private.h -text src/H5PartAttrib.f90 -text
src/H5PartAttrib.h -text
src/H5PartAttribF.c -text
src/H5PartErrors.h -text
src/H5PartF.c -text
src/H5PartPrivate.h -text
src/H5PartTypes.h -text
src/Makefile.am -text src/Makefile.am -text
src/h5core/Makefile.am -text src/TestUnderscore.f -text
src/h5core/h5_attach.c -text src/TestUnderscoreC.c -text
src/h5core/h5_attribs.c -text src/generate-attr.py -text
src/h5core/h5_attribs_private.h -text src/generate-h5bl-readwrite.py -text
src/h5core/h5_debug_private.h -text src/generate-h5multi-readwrite.py -text
src/h5core/h5_errorhandling.c -text test/Bench.c -text
src/h5core/h5_errorhandling_private.h -text test/BlockTestSpecs.txt -text
src/h5core/h5_fcmp.c -text test/H5BlockDissolveGhosts.c -text
src/h5core/h5_fcmp_private.h -text test/H5BlockParTestScalarField.c -text
src/h5core/h5_hdf5.c -text test/H5BlockParTestScalarField.pbs -text
src/h5core/h5_hdf5_private.h -text test/H5BlockParTestScalarFieldF.F90 -text
src/h5core/h5_hsearch.c -text test/H5BlockTestAttributes.c -text
src/h5core/h5_hsearch_private.h -text test/H5BlockTestAttributesF.F90 -text
src/h5core/h5_init.c -text test/H5ParallelTest.cc -text
src/h5core/h5_init_private.h -text test/H5PartAndreasTest.cc -text
src/h5core/h5_lustre.c -text test/H5PartTest.cc -text
src/h5core/h5_lustre_private.h -text test/H5PartTestParallel.cc -text
src/h5core/h5_maps.c -text test/H5test.cc -text
src/h5core/h5_maps_private.h -text test/H5testF.f -text
src/h5core/h5_model.c -text test/H5testFpar.F90 -text
src/h5core/h5_model_private.h -text
src/h5core/h5_mpi.c -text
src/h5core/h5_mpi_private.h -text
src/h5core/h5_openclose.c -text
src/h5core/h5_private.h -text
src/h5core/h5_qsort.c -text
src/h5core/h5_qsort_private.h -text
src/h5core/h5_qsort_r.c -text
src/h5core/h5_readwrite.c -text
src/h5core/h5_readwrite_private.h -text
src/h5core/h5_syscall.c -text
src/h5core/h5_syscall_private.h -text
src/h5core/h5_types_private.h -text
src/h5core/h5_va_macros.h -text
src/h5core/h5b_attribs.c -text
src/h5core/h5b_model.c -text
src/h5core/h5b_model_private.h -text
src/h5core/h5b_readwrite.c -text
src/h5core/h5b_readwrite_private.h -text
src/h5core/h5b_types_private.h -text
src/h5core/h5t_access_private.h -text
src/h5core/h5t_access_tetm.c -text
src/h5core/h5t_access_trim.c -text
src/h5core/h5t_adjacencies.c -text
src/h5core/h5t_adjacencies_private.h -text
src/h5core/h5t_adjacencies_tetm.c -text
src/h5core/h5t_adjacencies_trim.c -text
src/h5core/h5t_core.c -text
src/h5core/h5t_core_private.h -text
src/h5core/h5t_core_tetm.c -text
src/h5core/h5t_core_trim.c -text
src/h5core/h5t_errorhandling_private.h -text
src/h5core/h5t_map.c -text
src/h5core/h5t_map_private.h -text
src/h5core/h5t_model.c -text
src/h5core/h5t_model_private.h -text
src/h5core/h5t_model_tetm.c -text
src/h5core/h5t_model_trim.c -text
src/h5core/h5t_octree.c -text
src/h5core/h5t_octree_private.h -text
src/h5core/h5t_readwrite.c -text
src/h5core/h5t_readwrite_private.h -text
src/h5core/h5t_readwrite_tetm.c -text
src/h5core/h5t_readwrite_trim.c -text
src/h5core/h5t_ref_elements.c -text
src/h5core/h5t_ref_elements_private.h -text
src/h5core/h5t_retrieve.c -text
src/h5core/h5t_retrieve_private.h -text
src/h5core/h5t_retrieve_tetm.c -text
src/h5core/h5t_retrieve_trim.c -text
src/h5core/h5t_store.c -text
src/h5core/h5t_store_private.h -text
src/h5core/h5t_store_tetm.c -text
src/h5core/h5t_store_trim.c -text
src/h5core/h5t_tags.c -text
src/h5core/h5t_tags_private.h -text
src/h5core/h5t_types_private.h -text
src/h5core/h5u_errorhandling_private.h -text
src/h5core/h5u_model.c -text
src/h5core/h5u_readwrite.c -text
src/h5core/h5u_readwrite_private.h -text
src/h5core/h5u_types_private.h -text
src/include/H5.h -text
src/include/H5Block.h -text
src/include/H5Block_attribs.h -text
src/include/H5Block_io.h -text
src/include/H5Block_model.h -text
src/include/H5Fed.h -text
src/include/H5Fed_adjacency.h -text
src/include/H5Fed_model.h -text
src/include/H5Fed_retrieve.h -text
src/include/H5Fed_store.h -text
src/include/H5Fed_tags.h -text
src/include/H5Part.h -text
src/include/H5Part_io.h -text
src/include/H5Part_model.h -text
src/include/H5_attribs.h -text
src/include/H5_model.h -text
src/include/H5hut.h -text
src/include/Makefile.am -text
src/include/h5core/Makefile.am -text
src/include/h5core/h5.h -text
src/include/h5core/h5_attribs.h -text
src/include/h5core/h5_debug.h -text
src/include/h5core/h5_errorhandling.h -text
src/include/h5core/h5_model.h -text
src/include/h5core/h5_syscall.h -text
src/include/h5core/h5_types.h -text
src/include/h5core/h5b_attribs.h -text
src/include/h5core/h5b_io.h -text
src/include/h5core/h5b_model.h -text
src/include/h5core/h5t_adjacencies.h -text
src/include/h5core/h5t_map.h -text
src/include/h5core/h5t_model.h -text
src/include/h5core/h5t_octree.h -text
src/include/h5core/h5t_retrieve.h -text
src/include/h5core/h5t_store.h -text
src/include/h5core/h5t_tags.h -text
src/include/h5core/h5u_io.h -text
src/include/h5core/h5u_model.h -text
test/Makefile.am -text test/Makefile.am -text
test/h5b_read.c -text
test/h5b_test.c -text
test/h5b_write.c -text
test/h5u_read.c -text
test/h5u_test.c -text
test/h5u_write.c -text
test/params.h -text test/params.h -text
test/read.c -text
test/test.c -text
test/testf.F90 -text
test/testframe.c -text test/testframe.c -text
test/testframe.h -text test/testframe.h -text
tools/H5PartMerge/AUTHORS -text test/write.c -text
tools/H5PartMerge/COPYING -text tools/H5BlockBench.c -text
tools/H5PartMerge/ChangeLog -text tools/H5PartBench.c -text
tools/H5PartMerge/INSTALL -text
tools/H5PartMerge/NEWS -text
tools/H5PartMerge/README -text
tools/H5PartMerge/autogen.sh -text
tools/H5PartMerge/configure.ac -text
tools/H5PartMerge/makefile.am -text
tools/H5PartMerge/src/H5merge.cpp -text
tools/H5PartMerge/src/optparse.cpp -text
tools/H5PartMerge/src/optparse.hh -text
tools/Makefile.am -text tools/Makefile.am -text
tools/README -text tools/README -text
tools/h5PartDcToVtk.cc -text
tools/h5PartSurfaceToVtk.cc -text
tools/h5hutcc.in -text
tools/h5pAttrib.cc -text tools/h5pAttrib.cc -text
tools/h5pToGNUplot.cc -text tools/h5pToGNUplot.cc -text
tools/vtk2h5grid/Makefile.am -text tools/homdynToH5p.cc -text
tools/vtk2h5grid/vtk2h5grid.cc -text
visit_plugins/databases/H5Part/.depend -text
visit_plugins/databases/H5Part/Makefile -text
visit_plugins/databases/H5Part/README.txt -text
visit_plugins/databases/H5Part/avth5partFileFormat.C -text
visit_plugins/databases/H5Part/avth5partFileFormat.h -text
visit_plugins/databases/H5Part/h5part.xml -text
visit_plugins/databases/H5Part/h5partCommonPluginInfo.C -text
visit_plugins/databases/H5Part/h5partEnginePluginInfo.C -text
visit_plugins/databases/H5Part/h5partMDServerPluginInfo.C -text
visit_plugins/databases/H5Part/h5partPluginInfo.C -text
visit_plugins/databases/H5Part/h5partPluginInfo.h -text
visit_plugins/operators/BinnerFilter/.depend -text
visit_plugins/operators/BinnerFilter/Binner.xml -text
visit_plugins/operators/BinnerFilter/BinnerCommonPluginInfo.C -text
visit_plugins/operators/BinnerFilter/BinnerEnginePluginInfo.C -text
visit_plugins/operators/BinnerFilter/BinnerFilter.C -text
visit_plugins/operators/BinnerFilter/BinnerFilter.h -text
visit_plugins/operators/BinnerFilter/BinnerFilter.java -text
visit_plugins/operators/BinnerFilter/BinnerGUIPluginInfo.C -text
visit_plugins/operators/BinnerFilter/BinnerMakefile -text
visit_plugins/operators/BinnerFilter/BinnerPluginInfo.C -text
visit_plugins/operators/BinnerFilter/BinnerPluginInfo.h -text
visit_plugins/operators/BinnerFilter/BinnerScriptingPluginInfo.C -text
visit_plugins/operators/BinnerFilter/BinnerViewerPluginInfo.C -text
visit_plugins/operators/BinnerFilter/Binnerreplace.txt -text
visit_plugins/operators/BinnerFilter/Makefile -text
visit_plugins/operators/BinnerFilter/PyBinner.C -text
visit_plugins/operators/BinnerFilter/PyBinner.h -text
visit_plugins/operators/BinnerFilter/QvisBinnerWindow.C -text
visit_plugins/operators/BinnerFilter/QvisBinnerWindow.h -text
visit_plugins/operators/BinnerFilter/avtBinnerFilter.C -text
visit_plugins/operators/BinnerFilter/avtBinnerFilter.h -text
visit_plugins/operators/BinnerFilter/icon.xpm -text
visit_plugins/operators/RandomSample/.depend -text
visit_plugins/operators/RandomSample/H5PartRandomSampleAttributes.C -text
visit_plugins/operators/RandomSample/H5PartRandomSampleAttributes.h -text
visit_plugins/operators/RandomSample/H5PartRandomSampleAttributes.java -text
visit_plugins/operators/RandomSample/H5PartRandomSampleCommonPluginInfo.C -text
visit_plugins/operators/RandomSample/H5PartRandomSampleEnginePluginInfo.C -text
visit_plugins/operators/RandomSample/H5PartRandomSampleGUIPluginInfo.C -text
visit_plugins/operators/RandomSample/H5PartRandomSamplePluginInfo.C -text
visit_plugins/operators/RandomSample/H5PartRandomSamplePluginInfo.h -text
visit_plugins/operators/RandomSample/H5PartRandomSampleScriptingPluginInfo.C -text
visit_plugins/operators/RandomSample/H5PartRandomSampleViewerPluginInfo.C -text
visit_plugins/operators/RandomSample/Makefile -text
visit_plugins/operators/RandomSample/PyH5PartRandomSampleAttributes.C -text
visit_plugins/operators/RandomSample/PyH5PartRandomSampleAttributes.h -text
visit_plugins/operators/RandomSample/QvisH5PartRandomSampleWindow.C -text
visit_plugins/operators/RandomSample/QvisH5PartRandomSampleWindow.h -text
visit_plugins/operators/RandomSample/RandomSample.xml -text
visit_plugins/operators/RandomSample/avtH5PartRandomSampleFilter.C -text
visit_plugins/operators/RandomSample/avtH5PartRandomSampleFilter.h -text
visit_plugins/operators/RandomSample/icon.xpm -text
.gitignore
-95
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@@ -1,95 +0,0 @@
*.tar.gz
*.[oa]
*.la
*.lo
*.so
*.dSYM
*~
*.h5
.deps
.dirstamp
.libs
CMakeFiles
INSTALL
Makefile
Makefile.in
aclocal.m4
attach_field_attributes
dump_field_attributes
autom4te.cache/
compile
config.guess
config.h
config.h.in
config.log
config.status
config.sub
configure
depcomp
py-compile
examples/H5/attach_file
examples/H5/examples.h
examples/H5/h5hut.mod
examples/H5/openclose
examples/H5/openclosef
examples/H5/query
examples/H5/queryf
examples/H5/read_file_attribs
examples/H5/read_file_attribsf
examples/H5/read_step_attribs
examples/H5/read_step_attribsf
examples/H5/write_file_attribs
examples/H5/write_file_attribsf
examples/H5/write_step_attribs
examples/H5/write_step_attribsf
examples/H5Block/H5BlockExampleF
examples/H5Block/fields
examples/H5Block/read_write
examples/H5Part/Bench
examples/H5Part/H5test
examples/H5Part/H5testF
examples/H5Part/core_vfd
examples/H5Part/examples.h
examples/H5Part/h5hut.mod
examples/H5Part/particles
examples/H5Part/read_canonicalview
examples/H5Part/read_setnparticles
examples/H5Part/read_setview
examples/H5Part/read_strided
examples/H5Part/write_core_vfd
examples/H5Part/write_setnparticles
examples/H5Part/write_setnumparticles
examples/H5Part/write_setview
examples/H5Part/write_setviewf
examples/H5Part/write_strided
has_field
install-sh
libtool
ltmain.sh
m4/
missing
src/Fortran/TestUnderscore
src/Fortran/Underscore.h
src/include/H5hut.f
src/include/H5hutF.h
stamp-h1
test/h5b_test
test/h5u_test
test/h5_attach_test
tools/h5hutcc
tetmesh_adjacencies
tetmesh_read
tetmesh_read_tags
tetmesh_write
tetmesh_write1
examples/H5Fed/tetmesh_write2
examples/H5Fed/trimesh_2gnuplot
examples/H5Fed/trimesh_adjacencies
examples/H5Fed/trimesh_read
examples/H5Fed/trimesh_write
examples/H5Fed/trimesh_write_dunetest
tetmesh_write_tags
write_field
*.gch
ReferencePages
vtk2h5grid
AUTHORS
+2 -1
View File
@@ -6,5 +6,6 @@ Benedikt Oswald (PSI)
Wes Bethel (NERSC/LBNL) Wes Bethel (NERSC/LBNL)
John Shalf (NERSC/LBNL) John Shalf (NERSC/LBNL)
Cristina Siegerist (NERSC/LBNL) Cristina Siegerist (NERSC/LBNL)
Mark Howison (NERSC/LBNL)
Please use h5part@lists.psi.ch for communication. Please use h5part@lists.psi.ch for communicaion.
COPYING
+2 -2
View File
@@ -1,6 +1,6 @@
*** Copyright Notice *** *** Copyright Notice ***
H5hut Copyright (c) 2006-2016, The Regents of the University of California, H5Part Copyright (c) 2006-2009, The Regents of the University of California,
through Lawrence Berkeley National Laboratory (subject to receipt of any through Lawrence Berkeley National Laboratory (subject to receipt of any
required approvals from the U.S. Dept. of Energy) and the Paul Scherrer required approvals from the U.S. Dept. of Energy) and the Paul Scherrer
Institut (Switzerland). All rights reserved. Institut (Switzerland). All rights reserved.
@@ -25,7 +25,7 @@ and to permit others to do so.
*** License agreement *** *** License agreement ***
H5hut Copyright (c) 2006-2016, The Regents of the University of California, H5Part Copyright (c) 2006-2009, The Regents of the University of California,
through Lawrence Berkeley National Laboratory (subject to receipt of any through Lawrence Berkeley National Laboratory (subject to receipt of any
required approvals from the U.S. Dept. of Energy) and the Paul Scherrer required approvals from the U.S. Dept. of Energy) and the Paul Scherrer
Institut (Switzerland). All rights reserved. Institut (Switzerland). All rights reserved.
ChangeLog
-15
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@@ -1,15 +0,0 @@
2018-09-14 Gsell Achim <achi.gsell@psi.ch>
* C-API
- H5PartSetNumPoints() renamed to H5PartSetNumItems()
- H5PartGetNumPoints() renamed to H5PartGetNumItems()
- Dataset names longer then 64 bytes are handled as error.
- Same for step/iteration names.
* core API
- we use the term 'iteration' instead of 'step'
- we use the term 'item' instead of 'point'
- re-factor function and variable names
- in printing messages/debug output fixed
- do not flush (sync to disk) after writing a dataset by default,
can be controlled by a property
GNUmakefile.orig
Executable
+133
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@@ -0,0 +1,133 @@
UNAME := $(shell uname | perl -pe 's/(sn\d\d\d\d|jsimpson)/UNICOS\/mk/')
# for host specific options
HOST := $(shell hostname)
# for processor-specific options
ifeq ($(UNAME), Linux)
PROC := $(shell uname -p)
endif
CXX = c++
CC = cc
H5HOME = /usr/local/hdf5
CFLAGS = -g -I$(H5HOME)/include
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
# MacOS-X Serial
ifeq ($(UNAME), Darwin)
ifeq ($(PARALLEL), yes)
CXX = g++
CC = mpicc
H5HOME = /usr/local
CFLAGS = -O -g -I$(H5HOME)/include -DPARALLEL_IO
LDFLAGS = -L$(H5HOME)/lib -lmpich -lpmpich -lhdf5 -lz -lm
else
CXX = c++
CC = cc
F90 = xlf
H5HOME = /usr/local
CFLAGS = -O -g -I$(H5HOME)/include
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
endif
endif
# SGI MIPS/Irix
ifeq ($(UNAME), IRIX64)
CXX = CC
CC = cc
F90 = f90
ifeq ($(PARALLEL), yes)
H5HOME = $(HDF5_DIR)
CFLAGS = -64 -O3 -I$(H5HOME)/include -DPARALLEL_IO
LDFLAGS = -64 -O3 -L$(H5HOME)/lib -lhdf5 -lz -lmpi -lm
else
H5HOME = /usr/local
CFLAGS = -O3 -I$(H5HOME)/include
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
endif
endif
# AIX/SP-2 Parallel/serial : Seaborg
ifeq ($(UNAME), AIX)
ifeq ($(PARALLEL), yes) # parallel
CXX = mpCC_r
CC = mpxlc_r
# H5HOME = /usr/common/usg/hdf5_64/1.4.5-post2/parallel
H5HOME = /usr/common/usg/hdf5_64/1.6.1/parallel
# /usr/common/usg/hdf5/1.4.4/parallel
H4HOME = /usr/common/usg/hdf/default
OPT = -qarch=auto -qtune=auto-qcache=auto -O3 -qhot
CFLAGS = -q64 -I$(H5HOME)/include
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -L$(H4HOME)/lib -lz -lsz -lm
else # serial
CXX = xlC
CC = xlc
H5HOME = /usr/common/usg/hdf5/1.4.4/serial
H4HOME = /usr/common/usg/hdf/default
OPT = -qarch=auto -qtune=auto-qcache=auto -O3 -qhot
CFLAGS = -g -bmaxdata:800000000 -bmaxstack:256000000 -I$(H5HOME)/include
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -L$(H4HOME)/lib -lz -lm
endif
endif
# Linux
ifeq ($(UNAME), Linux)
# if this machine is NERSC/Davinci Altix system
ifeq ($(PROC), ia64)
CC = icc
CXX = icc
ifeq ($(PARALLEL), yes)
# IA64 Linux Parallel
ifeq ($(HOST), davinci)
H5HOME = $(HDF5_PAR)
MPILIB = -lmpi
else
H5HOME = /usr/local
HDF5_PAR_LIB = -L$(H5HOME)/lib -lhdf5 -lz -lm
HDF5_PAR_INCLUDE = -I$(H5HOME)/include
MPIHOME = /usr/local
MPILIB = -lmpich
endif # HOST
CFLAGS = -O3 -DPARALLEL_IO -DH5_HAVE_PARALLEL $(HDF5_PAR_INCLUDE)
LDFLAGS = $(HDF5_PAR_LIB) $(MPILIB)
else # IA64 Linux Serial
CFLAGS = -O3 $(HDF5_INCLUDE)
LDFLAGS = $(HDF5_LIB) -lm
endif # PARALLEL
# else this is standard IA32 linux
else
ifeq ($(PARALLEL), yes)
# Linux Parallel
CC = gcc
CXX = g++
H5HOME = /usr/local
MPIHOME = /usr/local
CFLAGS = -O -g -DPARALLEL_IO -DH5_HAVE_PARALLEL -I$(H5HOME)/include
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lmpich -lrt -lz -lm
else # Linux Serial
CXX = g++
CC = gcc
CFLAGS = -O -g -I$(H5HOME)/include
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
endif # !PARALLEL
endif # PROC!ia64
endif # !Linux
ifeq ($(PARALLEL), yes) #parallel
ifdef F90
all: H5PartTest H5PartTest.o H5Part.o H5PartTestParallel H5PartAndreasTest H5PartF.o
else
all: H5PartTest H5PartTest.o H5Part.o H5PartTestParallel H5PartAndreasTest
endif
else
ifdef F90
all: H5PartTest H5PartTest.o H5Part.o H5PartF.o
else
all: H5PartTest H5PartTest.o H5Part.o
endif
endif
include rules.make
INSTALL
+437
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@@ -0,0 +1,437 @@
==============================================================================
README file for H5Part configure
==============================================================================
+ 0. HDF5 library
-----------------
Make sure you have a working version of the HDF5 library installed. If you plan
to use parallel I/O you need to use a parallel HDF5 version. Source files and
installation instructions are available from the HDF5 website:
http://www.hdfgroup.org/HDF5/
+ 1. Quick start (If you feel lucky...)
----------------------------------------
For many platforms, where compilers are installed in the "default" location
and all the environment variables are set correctly, it should be sufficient
to type:
./configure [OPTIONS] && make [install]
to have the libraries and test program compiled.
+ 2. Configure line options
----------------------------
To view a full list of configure option, use:
./configure --help
(1) Enable options
--enable-fortran
--enable-parallel
--enable-tools
--enable-python
--enable-64 (only for AIX and Irix)
(2) Setting compilers related variables manually
To assign environment variables (e.g., CC, CFLAGS...), specify them as
VAR=VALUE before running configure. For example, if you are using the bash
shell, you might type:
export CC=gcc
to set the default C compiler. See below for descriptions of some useful
variables.
Compiler environment variables:
CC C compiler command
CXX C++ compiler command
FC Fortran compiler command
MPICC MPI-enabled C compiler command
MPICXX MPI-enabled C++ compiler command
MPIFC MPI-enabled Fortran compiler command
CFLAGS flags to append when invoking the C compiler
Library environment variables:
LDFLAGS flags to append when invoking the linker
(3) Setting prefix for installation manually (by default, the package will
install itself in the 'build' subdirectory of your source directory)
--prefix=PREFIX install files in PREFIX
+ 3. Platform specific settings for compiling libraries & test programs
------------------------------------------------------------------------
Building
make : builds the libraries and test programs
make install: builds and installs
make clean : removes extraneous object files
make distclean : returns configuration to unconfigured state
As tested on hosts:
(0) Franklin <franklin.nersc.gov> (CNL - Cray XT4)
--------------------------------------------------
module add hdf5_par
module add zlib
module add szip
export CC=cc CXX=CC FC=ftn MPICC=cc MPICXX=CC MPIFC=ftn
export LDFLAGS=$HDF5
./configure --enable-fortran --enable-parallel --with-hdf5path=$HDF5_PAR_DIR --with-mpiposix
make install
(1) Davinci <davinci.nersc.gov> (Linux"SUSE"-ia64)
---------------------------------------------------
FIRST THING FIRST!! Type:
module load intel
to have the proper compilers set up for use.
module load hdf5_par
[NOTE: module load hdf5 does not work at this moment.
Possible installation error of HDF5 on Davinci.]
Brief profile:
CC = icc
CXX = icc
FC = ifort
MPICC = icc
MPICXX = icc
MPIFC = ifort
If default doesn't work, try:
For C shell:
env CC=icc CXX=icc FC=ifort MPICC=icc MPICXX=icc MPIFC=ifort ./configure && make install
For Korn or Bourne shell:
CC=icc CXX=icc FC=ifort MPICC=icc MPICXX=icc MPIFC=ifort ./configure && make install
And, of course, you should add configure options, such as --enable-fortran --enable-parallel.
On this host, executing:
For C shell:
env CC=icc CXX=icc FC=ifort MPICC=icc MPICXX=icc MPIFC=ifort ./configure --enable-fortran --enable-parallel && make install
For Korn or Bourne shell:
CC=icc CXX=icc FC=ifort MPICC=icc MPICXX=icc MPIFC=ifort ./configure --enable-fortran --enable-parallel && make install
has functioned correctly.
To run test program, go to test directory:
(i) Serial test
run:
./H5testF
./H5PartTest
(ii) Parallel test
run:
mpirun 2 H5testFpar
mpirun 2 H5PartTestP
NOTE: Number 2 above is a arbitrary number that indicates the number of processes.
(2) Jacquard <jacquard.nersc.gov> (Linux"SUSE"-x86_64)
-------------------------------------------------------
Brief profile:
CC = pathcc
CXX = pathCC
FC = pathf90
MPICC = mpicc
MPICXX = mpicxx
MPIFC = mpif90
If default doesn't work, try:
For C shell:
env CC=pathcc CXX=pathCC FC=pathf90 MPICC=mpicc MPICXX=mpicxx MPIFC=mpif90 ./configure && make install
For Korn or Bourne shell:
CC=pathcc CXX=pathCC FC=pathf90 MPICC=mpicc MPICXX=mpicxx MPIFC=mpif90 ./configure && make install
And, of course, you should add configure options, such as --enable-fortran --enable-parallel.
On this host, executing:
For C shell:
env CC=pathcc CXX=pathCC FC=pathf90 MPICC=mpicc MPICXX=mpicxx MPIFC=mpif90 ./configure --enable-fortran --enable-parallel && make install
For Korn or Bourne shell:
CC=pathcc CXX=pathCC FC=pathf90 MPICC=mpicc MPICXX=mpicxx MPIFC=mpif90 ./configure --enable-fortran --enable-parallel && make install
has functioned correctly.
To run test program, go to test directory:
(i) Serial test
run:
./H5testF
./H5PartTest
(ii) Parallel test
In Jacquard, we need a script to run parallel programs, since Jacquard does not support interactive parallel processing. Instead, we need to submit the task to a queue. A sample script (run_H5testFpar.scr) may look like below:
+++++++++++++++++++++++++++++++++++++++
#!/bin/csh
#PBS -l nodes=1:ppn=2,walltime=00:05:00
#PBS -N H5testFpar
#PBS -o H5testFpar.out
#PBS -e H5testFpar.err
#PBS -q debug
#PBS -A mpccc
#PBS -V
setenv PBS_OWORKDIR /home/H5Part/test
cd $PBS_O_WORKDIR
mpirun -np 2 ./H5testFpar
+++++++++++++++++++++++++++++++++++++++
Then, we need to submit the task to a queue by running:
qsub run_H5testFpar.scr
After processed, the result will appear in H5testFpar.out, and error messages will appear in H5testFpar.err.
(3) Bassi <bassi.nersc.ogv> (AIX5.3.0.0-Power 3)
-------------------------------------------------
FIRST THING FIRST!! Type:
module load gcc
to have the proper compilers set up for use.
Brief profile:
CC = cc_r
CXX = cc_r
FC = xlf_r
MPICC = mpcc_r
MPICXX = mpcc_r
MPIFC = mpxlf_r
If default doesn't work, try:
For C shell:
env CC=cc_r CXX=cc_r FC=xlf_r MPICC=mpcc_r MPICXX=mpcc_r MPIFC=mpxlf_r ./configure && make install
For Korn or Bourne shell:
CC=cc_r CXX=cc_r FC=xlf_r MPICC=mpcc_r MPICXX=mpcc_r MPIFC=mpxlf_r ./configure && make install
And, of course, you should add configure options, such as --enable-fortran --enable-parallel.
On this host, executing:
For C shell:
env CC=cc_r CXX=cc_r FC=xlf_r MPICC=mpcc_r MPICXX=mpcc_r MPIFC=mpxlf_r ./configure --enable-fortran --enable-parallel && make install
For Korn or Bourne shell:
CC=cc_r CXX=cc_r FC=xlf_r MPICC=mpcc_r MPICXX=mpcc_r MPIFC=mpxlf_r ./configure --enable-fortran --enable-parallel && make install
has functioned correctly.
To run test program, go to test directory:
(i) Serial test
run:
./H5testF
./H5PartTest
(ii) Parallel test
run:
unsetenv MP_SINGLE_THREAD
poe ./H5PartTestP -procs 2 -nodes 1
poe ./H5testFpar -procs 2 -nodes 1
For more details on how to run parallel programs on Bassi, go to:
http://www.nersc.gov/nusers/resources/bassi/running_jobs/
(4) Starsky <starsky.lbl.gov> (Darwin8.5.0-PowerPC)
----------------------------------------------------
FIRST THING FIRST!! Set environment variables: (in tcsh)
setenv LD_LIBRARY_PATH /usr/local/g95/lib/gcc-lib/powerpc-apple-darwin8.5.0/4.0.3/
setenv PATH ${PATH}:/usr/local/g95/bin
NOTE: This environment variable setting is specifit to Starsky. It is to make configure find the fortran compiler.
Brief profile:
CC = gcc
CXX = g++
FC = g95
If default doesn't work, try:
For C shell:
env CC=gcc CXX=g++ FC=g95 ./configure && make install
For Korn or Bourne shell:
CC=gcc CXX=g++ FC=g95 ./configure && make install
And, of course, you should add configure options, such as --enable-fortran --enable-parallel.
On this host, executing:
For C shell:
env CC=gcc CXX=g++ FC=g95 ./configure --enable-fortran && make install
For Korn or Bourne shell:
CC=gcc CXX=g++ FC=g95 ./configure --enable-fortran && make install
has functioned correctly.
To run test program, go to test directory:
(i) Serial test
run:
./H5testF
./H5PartTest
(5) Linux AMD64 Visualization group workstations (Linux"SUSE"-x86_64)
---------------------------------------------------------
Brief profile:
CC = gcc
CXX = g++
FC = g95
If default doesn't work, try:
For C shell:
env CC=gcc CXX=g++ FC=g95 ./configure && make install
For Korn or Bourne shell:
CC=gcc CXX=g++ FC=g95 ./configure && make install
And, of course, you should add configure options, such as --enable-fortran --enable-parallel.
On this host, executing:
For C shell:
env CC=gcc CXX=g++ FC=g95 ./configure --enable-fortran && make install
For Korn or Bourne shell:
CC=gcc CXX=g++ FC=g95 ./configure --enable-fortran && make install
has functioned correctly.
To run test program, go to test directory:
(i) Serial test
run:
./H5testF
./H5PartTest
(6) Cray XT3 @ CSCS gele
1) modules/3.1.6 9) PrgEnv-pgi/1.4.26 17) xt-lustre-ss/1.4.26
2) MySQL/4.0.26 10) xt-pbs/5.3.4 18) Base-opts/1.4.26
3) acml/3.0 11) xt-service/1.4.26 19) subversion/1.3.2
4) pgi/6.1.4 12) xt-libc/1.4.26 20) zlib/1.2.3
5) totalview/7.2.0 13) xt-os/1.4.26 21) szip/2.0
6) xt-libsci/1.4.26 14) xt-catamount/1.4.26 22) hdf5/1.6.5
7) xt-mpt/1.4.26 15) xt-boot/1.4.26
8) xt-pe/1.4.26 16) xt-crms/1.4.26
CFLAGS="-I$H5HOME/include -DF77_SINGLE_UNDERSCORE" LDFLAGS="-L$H5HOME/lib -L$ZHOME/lib" ./configure --enable-parallel --enable-fortran
(7) merlin00 / merlin3
Currently Loaded Modulefiles:
1) hdf5/hdf5-1.6.5 2) root/root-5.10.00 3) mpi/mpich2-1.0.3-pgi-6.1 4) pgi/pgi_64-6.1
FC=mpif90 ./configure --enable-parallel --enable-fortran
==============================================================================
+ 4. Trouble shooting (Things to check for...)
--------------------------------------------
(0) Have you set the LD_LIBRARY_PATH?
---Some systems require the user to manually set the environment variable, LD_LIBRARY_PATH. To do so:
set the environment variable HDF5ROOT or PHDF5ROOT to point to your installation of HDF5 (serial and/or parallel respectively).
For Korn or Bourne shell:
LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${HDF5ROOT}/lib;export LD_LIBRARY_PATH
LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:{PHDF5ROOT}/lib;export LD_LIBRARY_PATH
For C shell:
setenv LD_LIBRARY_PATH ${LD_LIBRARY_PATH}:${HDF5ROOT}/lib
setenv LD_LIBRARY_PATH ${LD_LIBRARY_PATH}:${PHDF5ROOT}/lib
Note that the values of HDF5ROOT & PHDF5ROOT will be in the "summary" section when you run configure.
Not properly set LD_LIBRARY_PATH value may result in a runtime error:
./H5PartTest: error while loading shared libraries: libhdf5.so.0: cannot open shared object file: No such file or directory
(1) Are the compilers set correctly?
---Check with: which COMPILER
(2) Have you installed HDF5?
---You can get it at: http://vis.lbl.gov/Research/AcceleratorSAPP/index.html
(3) Have you loaded the proper modules?
---It is necessary in Davinci & Bassi, and configure && make install may not work without it.
Makefile.am
+13 -18
View File
@@ -1,21 +1,16 @@
ACLOCAL_AMFLAGS = -I m4 # Trial by Antino Kim
EXTRA_DIST = \ # Top level Makefile.am
autogen.sh \ ACLOCAL_AMFLAGS=-I m4
ax_pkg_swig.m4
SUBDIRS = \ SUBDIRS = \
src \ doc \
test \ src \
tools \ test \
doc \ tools
examples/H5 \
examples/H5Part \
examples/H5Block \
examples/H5Fed
MAINTAINERCLEANFILES = \ MAINTAINERCLEANFILES = \
config.h \ config.h \
config.log \ config.log \
config.status \ config.status \
stamp-h.in \ stamp-h.in \
stamp-h1 stamp-h1
Makefile.orig
Executable
+59
View File
@@ -0,0 +1,59 @@
# This is a very rudimentary multiarchitecture makefile
# You need to uncomment the default block of make variables you need
# Some key things to watch for are the following defines
# -DREGRESSIONTEST : enables a main(){} inside of
# the H5Part.cc file that does simple regression testing.
# -DPARALLEL_IO : If you want to use parallel HDF5, you have to
# enable this. Otherwise, you get only the serial
# implementation of the library.
# MacOS-X Serial
#CXX = c++
#CC = cc
#F90 = xlf
#H5HOME = /usr/local
#CFLAGS = -O -g -I$(H5HOME)/include
#LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
# AIX/SP-2 Parallel : Seaborg
#CXX = mpCC_r
#CC = mpcc_r
#F90 = mpxlf
#H5HOME = /usr/common/usg/hdf5/1.4.4/parallel
#H4HOME = /usr/common/usg/hdf/default
#OPT = -qarch=auto -qtune=auto-qcache=auto -O3 -qhot
#CFLAGS = -g -bmaxdata:800000000 -bmaxstack:256000000 -I$(H5HOME)/include
#LDFLAGS = -L$(H5HOME)/lib -lhdf5 -L$(H4HOME)/lib -lz -lm
# Linux Serial
#CXX = g++
#CC = gcc
#F90 = g77 # or could be pgif90
#CFLAGS = -O -g -I$(H5HOME)/include
#LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
# Linux Jacquard
CC = mpicc
CXX = mpicxx
F90 = mpif90
H5HOME = /usr/common/usg/hdf5/1.6.3/parallel
CFLAGS = -O2 -DPARALLEL_IO -DH5_HAVE_PARALLEL -I$(H5HOME)/include
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
# Linux Parallel
#CC = gcc
#CXX = g++
#F90 = g77
#H5HOME = /usr/local
# /usr/common/usg/hdf5/1.6.3/parallel
#MPIHOME = /usr/local
#CFLAGS = -O -g -DPARALLEL_IO -DH5_HAVE_PARALLEL -I$(H5HOME)/include
#LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lmpich -lrt -lz -lm
all: H5PartTest H5PartTest.o H5Part.o
parallel: H5PartTest H5PartTest.o H5Part.o H5PartTestParallel H5PartAndreasTest # parallel regression tests
fortran: H5PartF.o # fortran bindings
include rules.make
NEWS
-55
View File
@@ -1,58 +1,3 @@
#### H5PART trunk ############################################################
* h5_file_t is now uintptr_t
* experimental version of parallel H5Fed
* new API function for file open using properties (similiar to hdf5 properties)
#### H5PART 1.99.10 ############################################################
* C99 compiler required
* C API with inline functions
#### H5PART 1.99.0 ############################################################
rudimental implementation of a grid manager
Important changes from version 1.6 to 1.99.0
Renamed type:
H5PartFile -> h5_file_t
h5part_int64_t -> h5_int64_t
h5part_float64_t -> h5_float_t
Renamed functions:
All function not related to a specific data model have been renamed from
H5PartFunction() to H5Function().
Example:
H5PartOpenFile() -> H5OpenFile()
Removed functions:
To simplify the API, there is just one function to open a file. It's the
same function for serial and parallel code.
#### H5PART 1.6.6 ############################################################
Fixed typo (Write instead of Read) in the h5bl_3d_read_scalar_field* Fortran
interface.
Added missing type normalization for int32 type.
Rewrite of h5pAttrib tool.
#### H5PART 1.6.5 ############################################################
Fixed several build errors reported by Iuri Prilepov on Ubuntu 11.04.
#### H5PART 1.6.4 ############################################################
Fixed bug where H5PartSetViewIndices was not setting an empty view when the
number of elements is 0.
Set a threshold on the HDF5 alignment parameter so that small metadata writes
are not aligned, which causes large gaps in the file.
#### H5PART 1.6.3 ############################################################ #### H5PART 1.6.3 ############################################################
New build system uses libtool and can build shared libraries. New build system uses libtool and can build shared libraries.
README
+29
View File
@@ -0,0 +1,29 @@
Website:
http://vis.lbl.gov/Research/AcceleratorSAPP/
Particle based simulations of accelerator beam-lines, especially in six
dimensional phase space, generate vast amounts of data. Even though a subset of
statistical information regarding phase space or analysis needs to be preserved,
reading and writing such enormous restart files on massively parallel
supercomputing systems remains challenging.
H5Part is a very simple data storage schema and provides an API that simplifies
the reading/writing of the data to the HDF5 file format. An important
foundation for a stable visualization and data analysis environment is a stable
and portable file storage format and its associated APIs. The presence of a
"common file storage format," including associated APIs, will help foster a
fundamental level of interoperability across the project's software
infrastructure. It will also help ensure that key data analysis capabilities
are present during the earliest phases of the software development effort.
H5Part is built on top of the HDF5 (Hierarchical Data Format). HDF5 offers a
self-describing machine-independent binary file format that supports scalable
parallel I/O performance for MPI codes on a variety of supercomputing systems,
and works equally well on laptop computers. The API is available for C, C++, and
Fortran codes. The H5Part file format and APIs enable disparate research groups
with different simulation implementations to transparently share datasets and
data analysis tools. For instance, the common file format will enable groups
that depend on completely different simulation implementations to share data
analysis tools.
autogen.sh
+32 -26
View File
@@ -1,48 +1,54 @@
#!/bin/sh #!/bin/sh
# Run this to generate all the initial makefiles, etc. # Run this to generate all the initial makefiles, etc.
ACLOCAL_FLAGS="-I m4 -I . $ACLOCAL_FLAGS"
LIBTOOLIZE_FLAGS="--force $LIBTOOLIZE_FLAGS"
AUTOMAKE_FLAGS="--add-missing --copy --foreign $AUTOMAKE_FLAGS"
LIBTOOLIZE=`which libtoolize`
if [ "$LIBTOOLIZE" = "" ]; then
LIBTOOLIZE=`which glibtoolize`
fi
if [ "$LIBTOOLIZE" = "" ]; then
echo "libtoolize not found" 1>&2
exit 1
fi
echo "+ making misc files ..." echo "+ making misc files ..."
touch NEWS README AUTHORS ChangeLog touch NEWS README AUTHORS ChangeLog
echo echo
$LIBTOOLIZE $LIBTOOLIZE_FLAGS || { echo
echo "libtoolize failed"
exit 1
}
echo echo
echo "+ running aclocal ..." echo "+ running aclocal ..."
aclocal $ACLOCAL_FLAGS || { aclocal $ACLOCAL_FLAGS || {
echo "aclocal failed - check that all needed development files are present on system" echo
exit 1 echo "aclocal failed - check that all needed development files are present on system"
exit 1
} }
echo echo
echo
echo
echo "+ running autoheader ... " echo "+ running autoheader ... "
autoheader || { autoheader || {
echo "autoheader failed" echo
exit 1 echo "autoheader failed"
exit 1
} }
echo echo
echo
echo
echo "+ running libtoolize ... "
libtoolize --force || {
echo
echo "libtoolize failed"
exit 1
}
echo
echo
echo
echo "+ running autoconf ... " echo "+ running autoconf ... "
autoconf || { autoconf || {
echo "autoconf failed" echo
exit 1 echo "autoconf failed"
exit 1
} }
echo echo
echo
echo
echo "+ running automake ... " echo "+ running automake ... "
automake $AUTOMAKE_FLAGS || { automake -a -c --foreign || {
echo "automake failed" echo
exit 1 echo "automake failed"
exit 1
} }
echo
echo
echo
ax_cxx_compile_stdcxx.m4
-982
View File
@@ -1,982 +0,0 @@
# ===========================================================================
# https://www.gnu.org/software/autoconf-archive/ax_cxx_compile_stdcxx.html
# ===========================================================================
#
# SYNOPSIS
#
# AX_CXX_COMPILE_STDCXX(VERSION, [ext|noext], [mandatory|optional])
#
# DESCRIPTION
#
# Check for baseline language coverage in the compiler for the specified
# version of the C++ standard. If necessary, add switches to CXX and
# CXXCPP to enable support. VERSION may be '11' (for the C++11 standard)
# or '14' (for the C++14 standard).
#
# The second argument, if specified, indicates whether you insist on an
# extended mode (e.g. -std=gnu++11) or a strict conformance mode (e.g.
# -std=c++11). If neither is specified, you get whatever works, with
# preference for an extended mode.
#
# The third argument, if specified 'mandatory' or if left unspecified,
# indicates that baseline support for the specified C++ standard is
# required and that the macro should error out if no mode with that
# support is found. If specified 'optional', then configuration proceeds
# regardless, after defining HAVE_CXX${VERSION} if and only if a
# supporting mode is found.
#
# LICENSE
#
# Copyright (c) 2008 Benjamin Kosnik <bkoz@redhat.com>
# Copyright (c) 2012 Zack Weinberg <zackw@panix.com>
# Copyright (c) 2013 Roy Stogner <roystgnr@ices.utexas.edu>
# Copyright (c) 2014, 2015 Google Inc.; contributed by Alexey Sokolov <sokolov@google.com>
# Copyright (c) 2015 Paul Norman <penorman@mac.com>
# Copyright (c) 2015 Moritz Klammler <moritz@klammler.eu>
# Copyright (c) 2016 Krzesimir Nowak <qdlacz@gmail.com>
#
# Copying and distribution of this file, with or without modification, are
# permitted in any medium without royalty provided the copyright notice
# and this notice are preserved. This file is offered as-is, without any
# warranty.
#serial 7
dnl This macro is based on the code from the AX_CXX_COMPILE_STDCXX_11 macro
dnl (serial version number 13).
AX_REQUIRE_DEFINED([AC_MSG_WARN])
AC_DEFUN([AX_CXX_COMPILE_STDCXX], [dnl
m4_if([$1], [11], [ax_cxx_compile_alternatives="11 0x"],
[$1], [14], [ax_cxx_compile_alternatives="14 1y"],
[$1], [17], [ax_cxx_compile_alternatives="17 1z"],
[m4_fatal([invalid first argument `$1' to AX_CXX_COMPILE_STDCXX])])dnl
m4_if([$2], [], [],
[$2], [ext], [],
[$2], [noext], [],
[m4_fatal([invalid second argument `$2' to AX_CXX_COMPILE_STDCXX])])dnl
m4_if([$3], [], [ax_cxx_compile_cxx$1_required=true],
[$3], [mandatory], [ax_cxx_compile_cxx$1_required=true],
[$3], [optional], [ax_cxx_compile_cxx$1_required=false],
[m4_fatal([invalid third argument `$3' to AX_CXX_COMPILE_STDCXX])])
AC_LANG_PUSH([C++])dnl
ac_success=no
AC_CACHE_CHECK(whether $CXX supports C++$1 features by default,
ax_cv_cxx_compile_cxx$1,
[AC_COMPILE_IFELSE([AC_LANG_SOURCE([_AX_CXX_COMPILE_STDCXX_testbody_$1])],
[ax_cv_cxx_compile_cxx$1=yes],
[ax_cv_cxx_compile_cxx$1=no])])
if test x$ax_cv_cxx_compile_cxx$1 = xyes; then
ac_success=yes
fi
m4_if([$2], [noext], [], [dnl
if test x$ac_success = xno; then
for alternative in ${ax_cxx_compile_alternatives}; do
switch="-std=gnu++${alternative}"
cachevar=AS_TR_SH([ax_cv_cxx_compile_cxx$1_$switch])
AC_CACHE_CHECK(whether $CXX supports C++$1 features with $switch,
$cachevar,
[ac_save_CXX="$CXX"
CXX="$CXX $switch"
AC_COMPILE_IFELSE([AC_LANG_SOURCE([_AX_CXX_COMPILE_STDCXX_testbody_$1])],
[eval $cachevar=yes],
[eval $cachevar=no])
CXX="$ac_save_CXX"])
if eval test x\$$cachevar = xyes; then
CXX="$CXX $switch"
if test -n "$CXXCPP" ; then
CXXCPP="$CXXCPP $switch"
fi
ac_success=yes
break
fi
done
fi])
m4_if([$2], [ext], [], [dnl
if test x$ac_success = xno; then
dnl HP's aCC needs +std=c++11 according to:
dnl http://h21007.www2.hp.com/portal/download/files/unprot/aCxx/PDF_Release_Notes/769149-001.pdf
dnl Cray's crayCC needs "-h std=c++11"
for alternative in ${ax_cxx_compile_alternatives}; do
for switch in -std=c++${alternative} +std=c++${alternative} "-h std=c++${alternative}"; do
cachevar=AS_TR_SH([ax_cv_cxx_compile_cxx$1_$switch])
AC_CACHE_CHECK(whether $CXX supports C++$1 features with $switch,
$cachevar,
[ac_save_CXX="$CXX"
CXX="$CXX $switch"
AC_COMPILE_IFELSE([AC_LANG_SOURCE([_AX_CXX_COMPILE_STDCXX_testbody_$1])],
[eval $cachevar=yes],
[eval $cachevar=no])
CXX="$ac_save_CXX"])
if eval test x\$$cachevar = xyes; then
CXX="$CXX $switch"
if test -n "$CXXCPP" ; then
CXXCPP="$CXXCPP $switch"
fi
ac_success=yes
break
fi
done
if test x$ac_success = xyes; then
break
fi
done
fi])
AC_LANG_POP([C++])
if test x$ax_cxx_compile_cxx$1_required = xtrue; then
if test x$ac_success = xno; then
AC_MSG_ERROR([*** A compiler with support for C++$1 language features is required.])
fi
fi
if test x$ac_success = xno; then
HAVE_CXX$1=0
AC_MSG_NOTICE([No compiler with C++$1 support was found])
else
HAVE_CXX$1=1
AC_DEFINE(HAVE_CXX$1,1,
[define if the compiler supports basic C++$1 syntax])
fi
AC_SUBST(HAVE_CXX$1)
m4_if([$1], [17], [AC_MSG_WARN([C++17 is not yet standardized, so the checks may change in incompatible ways anytime])])
])
dnl Test body for checking C++11 support
m4_define([_AX_CXX_COMPILE_STDCXX_testbody_11],
_AX_CXX_COMPILE_STDCXX_testbody_new_in_11
)
dnl Test body for checking C++14 support
m4_define([_AX_CXX_COMPILE_STDCXX_testbody_14],
_AX_CXX_COMPILE_STDCXX_testbody_new_in_11
_AX_CXX_COMPILE_STDCXX_testbody_new_in_14
)
m4_define([_AX_CXX_COMPILE_STDCXX_testbody_17],
_AX_CXX_COMPILE_STDCXX_testbody_new_in_11
_AX_CXX_COMPILE_STDCXX_testbody_new_in_14
_AX_CXX_COMPILE_STDCXX_testbody_new_in_17
)
dnl Tests for new features in C++11
m4_define([_AX_CXX_COMPILE_STDCXX_testbody_new_in_11], [[
// If the compiler admits that it is not ready for C++11, why torture it?
// Hopefully, this will speed up the test.
#ifndef __cplusplus
#error "This is not a C++ compiler"
#elif __cplusplus < 201103L
#error "This is not a C++11 compiler"
#else
namespace cxx11
{
namespace test_static_assert
{
template <typename T>
struct check
{
static_assert(sizeof(int) <= sizeof(T), "not big enough");
};
}
namespace test_final_override
{
struct Base
{
virtual void f() {}
};
struct Derived : public Base
{
virtual void f() override {}
};
}
namespace test_double_right_angle_brackets
{
template < typename T >
struct check {};
typedef check<void> single_type;
typedef check<check<void>> double_type;
typedef check<check<check<void>>> triple_type;
typedef check<check<check<check<void>>>> quadruple_type;
}
namespace test_decltype
{
int
f()
{
int a = 1;
decltype(a) b = 2;
return a + b;
}
}
namespace test_type_deduction
{
template < typename T1, typename T2 >
struct is_same
{
static const bool value = false;
};
template < typename T >
struct is_same<T, T>
{
static const bool value = true;
};
template < typename T1, typename T2 >
auto
add(T1 a1, T2 a2) -> decltype(a1 + a2)
{
return a1 + a2;
}
int
test(const int c, volatile int v)
{
static_assert(is_same<int, decltype(0)>::value == true, "");
static_assert(is_same<int, decltype(c)>::value == false, "");
static_assert(is_same<int, decltype(v)>::value == false, "");
auto ac = c;
auto av = v;
auto sumi = ac + av + 'x';
auto sumf = ac + av + 1.0;
static_assert(is_same<int, decltype(ac)>::value == true, "");
static_assert(is_same<int, decltype(av)>::value == true, "");
static_assert(is_same<int, decltype(sumi)>::value == true, "");
static_assert(is_same<int, decltype(sumf)>::value == false, "");
static_assert(is_same<int, decltype(add(c, v))>::value == true, "");
return (sumf > 0.0) ? sumi : add(c, v);
}
}
namespace test_noexcept
{
int f() { return 0; }
int g() noexcept { return 0; }
static_assert(noexcept(f()) == false, "");
static_assert(noexcept(g()) == true, "");
}
namespace test_constexpr
{
template < typename CharT >
unsigned long constexpr
strlen_c_r(const CharT *const s, const unsigned long acc) noexcept
{
return *s ? strlen_c_r(s + 1, acc + 1) : acc;
}
template < typename CharT >
unsigned long constexpr
strlen_c(const CharT *const s) noexcept
{
return strlen_c_r(s, 0UL);
}
static_assert(strlen_c("") == 0UL, "");
static_assert(strlen_c("1") == 1UL, "");
static_assert(strlen_c("example") == 7UL, "");
static_assert(strlen_c("another\0example") == 7UL, "");
}
namespace test_rvalue_references
{
template < int N >
struct answer
{
static constexpr int value = N;
};
answer<1> f(int&) { return answer<1>(); }
answer<2> f(const int&) { return answer<2>(); }
answer<3> f(int&&) { return answer<3>(); }
void
test()
{
int i = 0;
const int c = 0;
static_assert(decltype(f(i))::value == 1, "");
static_assert(decltype(f(c))::value == 2, "");
static_assert(decltype(f(0))::value == 3, "");
}
}
namespace test_uniform_initialization
{
struct test
{
static const int zero {};
static const int one {1};
};
static_assert(test::zero == 0, "");
static_assert(test::one == 1, "");
}
namespace test_lambdas
{
void
test1()
{
auto lambda1 = [](){};
auto lambda2 = lambda1;
lambda1();
lambda2();
}
int
test2()
{
auto a = [](int i, int j){ return i + j; }(1, 2);
auto b = []() -> int { return '0'; }();
auto c = [=](){ return a + b; }();
auto d = [&](){ return c; }();
auto e = [a, &b](int x) mutable {
const auto identity = [](int y){ return y; };
for (auto i = 0; i < a; ++i)
a += b--;
return x + identity(a + b);
}(0);
return a + b + c + d + e;
}
int
test3()
{
const auto nullary = [](){ return 0; };
const auto unary = [](int x){ return x; };
using nullary_t = decltype(nullary);
using unary_t = decltype(unary);
const auto higher1st = [](nullary_t f){ return f(); };
const auto higher2nd = [unary](nullary_t f1){
return [unary, f1](unary_t f2){ return f2(unary(f1())); };
};
return higher1st(nullary) + higher2nd(nullary)(unary);
}
}
namespace test_variadic_templates
{
template <int...>
struct sum;
template <int N0, int... N1toN>
struct sum<N0, N1toN...>
{
static constexpr auto value = N0 + sum<N1toN...>::value;
};
template <>
struct sum<>
{
static constexpr auto value = 0;
};
static_assert(sum<>::value == 0, "");
static_assert(sum<1>::value == 1, "");
static_assert(sum<23>::value == 23, "");
static_assert(sum<1, 2>::value == 3, "");
static_assert(sum<5, 5, 11>::value == 21, "");
static_assert(sum<2, 3, 5, 7, 11, 13>::value == 41, "");
}
// http://stackoverflow.com/questions/13728184/template-aliases-and-sfinae
// Clang 3.1 fails with headers of libstd++ 4.8.3 when using std::function
// because of this.
namespace test_template_alias_sfinae
{
struct foo {};
template<typename T>
using member = typename T::member_type;
template<typename T>
void func(...) {}
template<typename T>
void func(member<T>*) {}
void test();
void test() { func<foo>(0); }
}
} // namespace cxx11
#endif // __cplusplus >= 201103L
]])
dnl Tests for new features in C++14
m4_define([_AX_CXX_COMPILE_STDCXX_testbody_new_in_14], [[
// If the compiler admits that it is not ready for C++14, why torture it?
// Hopefully, this will speed up the test.
#ifndef __cplusplus
#error "This is not a C++ compiler"
#elif __cplusplus < 201402L
#error "This is not a C++14 compiler"
#else
namespace cxx14
{
namespace test_polymorphic_lambdas
{
int
test()
{
const auto lambda = [](auto&&... args){
const auto istiny = [](auto x){
return (sizeof(x) == 1UL) ? 1 : 0;
};
const int aretiny[] = { istiny(args)... };
return aretiny[0];
};
return lambda(1, 1L, 1.0f, '1');
}
}
namespace test_binary_literals
{
constexpr auto ivii = 0b0000000000101010;
static_assert(ivii == 42, "wrong value");
}
namespace test_generalized_constexpr
{
template < typename CharT >
constexpr unsigned long
strlen_c(const CharT *const s) noexcept
{
auto length = 0UL;
for (auto p = s; *p; ++p)
++length;
return length;
}
static_assert(strlen_c("") == 0UL, "");
static_assert(strlen_c("x") == 1UL, "");
static_assert(strlen_c("test") == 4UL, "");
static_assert(strlen_c("another\0test") == 7UL, "");
}
namespace test_lambda_init_capture
{
int
test()
{
auto x = 0;
const auto lambda1 = [a = x](int b){ return a + b; };
const auto lambda2 = [a = lambda1(x)](){ return a; };
return lambda2();
}
}
namespace test_digit_separators
{
constexpr auto ten_million = 100'000'000;
static_assert(ten_million == 100000000, "");
}
namespace test_return_type_deduction
{
auto f(int& x) { return x; }
decltype(auto) g(int& x) { return x; }
template < typename T1, typename T2 >
struct is_same
{
static constexpr auto value = false;
};
template < typename T >
struct is_same<T, T>
{
static constexpr auto value = true;
};
int
test()
{
auto x = 0;
static_assert(is_same<int, decltype(f(x))>::value, "");
static_assert(is_same<int&, decltype(g(x))>::value, "");
return x;
}
}
} // namespace cxx14
#endif // __cplusplus >= 201402L
]])
dnl Tests for new features in C++17
m4_define([_AX_CXX_COMPILE_STDCXX_testbody_new_in_17], [[
// If the compiler admits that it is not ready for C++17, why torture it?
// Hopefully, this will speed up the test.
#ifndef __cplusplus
#error "This is not a C++ compiler"
#elif __cplusplus <= 201402L
#error "This is not a C++17 compiler"
#else
#if defined(__clang__)
#define REALLY_CLANG
#else
#if defined(__GNUC__)
#define REALLY_GCC
#endif
#endif
#include <initializer_list>
#include <utility>
#include <type_traits>
namespace cxx17
{
#if !defined(REALLY_CLANG)
namespace test_constexpr_lambdas
{
// TODO: test it with clang++ from git
constexpr int foo = [](){return 42;}();
}
#endif // !defined(REALLY_CLANG)
namespace test::nested_namespace::definitions
{
}
namespace test_fold_expression
{
template<typename... Args>
int multiply(Args... args)
{
return (args * ... * 1);
}
template<typename... Args>
bool all(Args... args)
{
return (args && ...);
}
}
namespace test_extended_static_assert
{
static_assert (true);
}
namespace test_auto_brace_init_list
{
auto foo = {5};
auto bar {5};
static_assert(std::is_same<std::initializer_list<int>, decltype(foo)>::value);
static_assert(std::is_same<int, decltype(bar)>::value);
}
namespace test_typename_in_template_template_parameter
{
template<template<typename> typename X> struct D;
}
namespace test_fallthrough_nodiscard_maybe_unused_attributes
{
int f1()
{
return 42;
}
[[nodiscard]] int f2()
{
[[maybe_unused]] auto unused = f1();
switch (f1())
{
case 17:
f1();
[[fallthrough]];
case 42:
f1();
}
return f1();
}
}
namespace test_extended_aggregate_initialization
{
struct base1
{
int b1, b2 = 42;
};
struct base2
{
base2() {
b3 = 42;
}
int b3;
};
struct derived : base1, base2
{
int d;
};
derived d1 {{1, 2}, {}, 4}; // full initialization
derived d2 {{}, {}, 4}; // value-initialized bases
}
namespace test_general_range_based_for_loop
{
struct iter
{
int i;
int& operator* ()
{
return i;
}
const int& operator* () const
{
return i;
}
iter& operator++()
{
++i;
return *this;
}
};
struct sentinel
{
int i;
};
bool operator== (const iter& i, const sentinel& s)
{
return i.i == s.i;
}
bool operator!= (const iter& i, const sentinel& s)
{
return !(i == s);
}
struct range
{
iter begin() const
{
return {0};
}
sentinel end() const
{
return {5};
}
};
void f()
{
range r {};
for (auto i : r)
{
[[maybe_unused]] auto v = i;
}
}
}
namespace test_lambda_capture_asterisk_this_by_value
{
struct t
{
int i;
int foo()
{
return [*this]()
{
return i;
}();
}
};
}
namespace test_enum_class_construction
{
enum class byte : unsigned char
{};
byte foo {42};
}
namespace test_constexpr_if
{
template <bool cond>
int f ()
{
if constexpr(cond)
{
return 13;
}
else
{
return 42;
}
}
}
namespace test_selection_statement_with_initializer
{
int f()
{
return 13;
}
int f2()
{
if (auto i = f(); i > 0)
{
return 3;
}
switch (auto i = f(); i + 4)
{
case 17:
return 2;
default:
return 1;
}
}
}
#if !defined(REALLY_CLANG)
namespace test_template_argument_deduction_for_class_templates
{
// TODO: test it with clang++ from git
template <typename T1, typename T2>
struct pair
{
pair (T1 p1, T2 p2)
: m1 {p1},
m2 {p2}
{}
T1 m1;
T2 m2;
};
void f()
{
[[maybe_unused]] auto p = pair{13, 42u};
}
}
#endif // !defined(REALLY_CLANG)
namespace test_non_type_auto_template_parameters
{
template <auto n>
struct B
{};
B<5> b1;
B<'a'> b2;
}
#if !defined(REALLY_CLANG)
namespace test_structured_bindings
{
// TODO: test it with clang++ from git
int arr[2] = { 1, 2 };
std::pair<int, int> pr = { 1, 2 };
auto f1() -> int(&)[2]
{
return arr;
}
auto f2() -> std::pair<int, int>&
{
return pr;
}
struct S
{
int x1 : 2;
volatile double y1;
};
S f3()
{
return {};
}
auto [ x1, y1 ] = f1();
auto& [ xr1, yr1 ] = f1();
auto [ x2, y2 ] = f2();
auto& [ xr2, yr2 ] = f2();
const auto [ x3, y3 ] = f3();
}
#endif // !defined(REALLY_CLANG)
#if !defined(REALLY_CLANG)
namespace test_exception_spec_type_system
{
// TODO: test it with clang++ from git
struct Good {};
struct Bad {};
void g1() noexcept;
void g2();
template<typename T>
Bad
f(T*, T*);
template<typename T1, typename T2>
Good
f(T1*, T2*);
static_assert (std::is_same_v<Good, decltype(f(g1, g2))>);
}
#endif // !defined(REALLY_CLANG)
namespace test_inline_variables
{
template<class T> void f(T)
{}
template<class T> inline T g(T)
{
return T{};
}
template<> inline void f<>(int)
{}
template<> int g<>(int)
{
return 5;
}
}
} // namespace cxx17
#endif // __cplusplus <= 201402L
]])
ax_cxx_compile_stdcxx_11.m4
-39
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@@ -1,39 +0,0 @@
# =============================================================================
# https://www.gnu.org/software/autoconf-archive/ax_cxx_compile_stdcxx_11.html
# =============================================================================
#
# SYNOPSIS
#
# AX_CXX_COMPILE_STDCXX_11([ext|noext], [mandatory|optional])
#
# DESCRIPTION
#
# Check for baseline language coverage in the compiler for the C++11
# standard; if necessary, add switches to CXX and CXXCPP to enable
# support.
#
# This macro is a convenience alias for calling the AX_CXX_COMPILE_STDCXX
# macro with the version set to C++11. The two optional arguments are
# forwarded literally as the second and third argument respectively.
# Please see the documentation for the AX_CXX_COMPILE_STDCXX macro for
# more information. If you want to use this macro, you also need to
# download the ax_cxx_compile_stdcxx.m4 file.
#
# LICENSE
#
# Copyright (c) 2008 Benjamin Kosnik <bkoz@redhat.com>
# Copyright (c) 2012 Zack Weinberg <zackw@panix.com>
# Copyright (c) 2013 Roy Stogner <roystgnr@ices.utexas.edu>
# Copyright (c) 2014, 2015 Google Inc.; contributed by Alexey Sokolov <sokolov@google.com>
# Copyright (c) 2015 Paul Norman <penorman@mac.com>
# Copyright (c) 2015 Moritz Klammler <moritz@klammler.eu>
#
# Copying and distribution of this file, with or without modification, are
# permitted in any medium without royalty provided the copyright notice
# and this notice are preserved. This file is offered as-is, without any
# warranty.
#serial 18
AX_REQUIRE_DEFINED([AX_CXX_COMPILE_STDCXX])
AC_DEFUN([AX_CXX_COMPILE_STDCXX_11], [AX_CXX_COMPILE_STDCXX([11], [$1], [$2])])
ax_pkg_swig.m4
-135
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@@ -1,135 +0,0 @@
# ===========================================================================
# http://www.gnu.org/software/autoconf-archive/ax_pkg_swig.html
# ===========================================================================
#
# SYNOPSIS
#
# AX_PKG_SWIG([major.minor.micro], [action-if-found], [action-if-not-found])
#
# DESCRIPTION
#
# This macro searches for a SWIG installation on your system. If found,
# then SWIG is AC_SUBST'd; if not found, then $SWIG is empty. If SWIG is
# found, then SWIG_LIB is set to the SWIG library path, and AC_SUBST'd.
#
# You can use the optional first argument to check if the version of the
# available SWIG is greater than or equal to the value of the argument. It
# should have the format: N[.N[.N]] (N is a number between 0 and 999. Only
# the first N is mandatory.) If the version argument is given (e.g.
# 1.3.17), AX_PKG_SWIG checks that the swig package is this version number
# or higher.
#
# As usual, action-if-found is executed if SWIG is found, otherwise
# action-if-not-found is executed.
#
# In configure.in, use as:
#
# AX_PKG_SWIG(1.3.17, [], [ AC_MSG_ERROR([SWIG is required to build..]) ])
# AX_SWIG_ENABLE_CXX
# AX_SWIG_MULTI_MODULE_SUPPORT
# AX_SWIG_PYTHON
#
# LICENSE
#
# Copyright (c) 2008 Sebastian Huber <sebastian-huber@web.de>
# Copyright (c) 2008 Alan W. Irwin
# Copyright (c) 2008 Rafael Laboissiere <rafael@laboissiere.net>
# Copyright (c) 2008 Andrew Collier
# Copyright (c) 2011 Murray Cumming <murrayc@openismus.com>
#
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by the
# Free Software Foundation; either version 2 of the License, or (at your
# option) any later version.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
# Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program. If not, see <http://www.gnu.org/licenses/>.
#
# As a special exception, the respective Autoconf Macro's copyright owner
# gives unlimited permission to copy, distribute and modify the configure
# scripts that are the output of Autoconf when processing the Macro. You
# need not follow the terms of the GNU General Public License when using
# or distributing such scripts, even though portions of the text of the
# Macro appear in them. The GNU General Public License (GPL) does govern
# all other use of the material that constitutes the Autoconf Macro.
#
# This special exception to the GPL applies to versions of the Autoconf
# Macro released by the Autoconf Archive. When you make and distribute a
# modified version of the Autoconf Macro, you may extend this special
# exception to the GPL to apply to your modified version as well.
#serial 11
AC_DEFUN([AX_PKG_SWIG],[
# Ubuntu has swig 2.0 as /usr/bin/swig2.0
AC_PATH_PROGS([SWIG],[swig swig2.0])
if test -z "$SWIG" ; then
m4_ifval([$3],[$3],[:])
elif test -n "$1" ; then
AC_MSG_CHECKING([SWIG version])
[swig_version=`$SWIG -version 2>&1 | grep 'SWIG Version' | sed 's/.*\([0-9][0-9]*\.[0-9][0-9]*\.[0-9][0-9]*\).*/\1/g'`]
AC_MSG_RESULT([$swig_version])
if test -n "$swig_version" ; then
# Calculate the required version number components
[required=$1]
[required_major=`echo $required | sed 's/[^0-9].*//'`]
if test -z "$required_major" ; then
[required_major=0]
fi
[required=`echo $required | sed 's/[0-9]*[^0-9]//'`]
[required_minor=`echo $required | sed 's/[^0-9].*//'`]
if test -z "$required_minor" ; then
[required_minor=0]
fi
[required=`echo $required | sed 's/[0-9]*[^0-9]//'`]
[required_patch=`echo $required | sed 's/[^0-9].*//'`]
if test -z "$required_patch" ; then
[required_patch=0]
fi
# Calculate the available version number components
[available=$swig_version]
[available_major=`echo $available | sed 's/[^0-9].*//'`]
if test -z "$available_major" ; then
[available_major=0]
fi
[available=`echo $available | sed 's/[0-9]*[^0-9]//'`]
[available_minor=`echo $available | sed 's/[^0-9].*//'`]
if test -z "$available_minor" ; then
[available_minor=0]
fi
[available=`echo $available | sed 's/[0-9]*[^0-9]//'`]
[available_patch=`echo $available | sed 's/[^0-9].*//'`]
if test -z "$available_patch" ; then
[available_patch=0]
fi
# Convert the version tuple into a single number for easier comparison.
# Using base 100 should be safe since SWIG internally uses BCD values
# to encode its version number.
required_swig_vernum=`expr $required_major \* 10000 \
\+ $required_minor \* 100 \+ $required_patch`
available_swig_vernum=`expr $available_major \* 10000 \
\+ $available_minor \* 100 \+ $available_patch`
if test $available_swig_vernum -lt $required_swig_vernum; then
AC_MSG_WARN([SWIG version >= $1 is required. You have $swig_version.])
SWIG=''
m4_ifval([$3],[$3],[])
else
AC_MSG_CHECKING([for SWIG library])
SWIG_LIB=`$SWIG -swiglib`
AC_MSG_RESULT([$SWIG_LIB])
m4_ifval([$2],[$2],[])
fi
else
AC_MSG_WARN([cannot determine SWIG version])
SWIG=''
m4_ifval([$3],[$3],[])
fi
fi
AC_SUBST([SWIG_LIB])
])
config.guess
Vendored Executable
+1561
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File diff suppressed because it is too large Load Diff
config.sub
Vendored Executable
+1686
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File diff suppressed because it is too large Load Diff
configure-crayxt
Executable
+20
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@@ -0,0 +1,20 @@
#!/bin/sh
F90=gfortran
./configure \
$@ \
--enable-parallel \
--enable-fortran \
--enable-tools \
CC=cc CXX=CC FC=$F90 \
MPICC=cc MPICXX=CC MPIFC=ftn
sed -e 's/$F90/ftn/g' <Makefile > newMakefile
mv newMakefile Makefile
sed -e 's/$F90/ftn/g' <src/Makefile > newMakefile
mv newMakefile src/Makefile
sed -e 's/$F90/ftn/g' <test/Makefile > newMakefile
mv newMakefile test/Makefile
sed -e 's/$F90/ftn/g' <tools/Makefile > newMakefile
mv newMakefile tools/Makefile
configure.ac
+290 -437
View File
@@ -1,165 +1,72 @@
# # Every configure script must call AC_INIT before doing anything else.
# Copyright (c) 2006-2018, The Regents of the University of California, # AC_INIT (package, version, [bug-report], [tarname])
# through Lawrence Berkeley National Laboratory (subject to receipt of any AC_INIT([H5Part], [1.6.3], [h5part@lists.psi.ch], H5Part)
# required approvals from the U.S. Dept. of Energy) and the Paul Scherrer
# Institut (Switzerland). All rights reserved. # Ensure that a recent enough version of Autoconf is being used.
# # If the version of Autoconf being used to create configure is earlier than version,
# License: see file COPYING in top level of source distribution. # print an error message to the standard error output and do not create configure.
# AC_PREREQ(2.59)
AC_INIT([H5hut], [2.0.0rc7], [h5part@lists.psi.ch], H5hut)
AC_PREREQ(2.60) # should be called right after AC_INIT.
# configure scripts can create a C header file containing `#define' directives.
# The AC_CONFIG_HEADERS macro selects this kind of output.
AC_CONFIG_HEADERS(config.h) AC_CONFIG_HEADERS(config.h)
AC_CONFIG_MACRO_DIR([m4]) AC_CONFIG_MACRO_DIR([m4])
LT_INIT
# AM_INIT_AUTOMAKE is required to use autoconf with automake
AM_INIT_AUTOMAKE AM_INIT_AUTOMAKE
ENABLE_DEBUG='no' BUILD_LIBS='libH5Part'
ENABLE_C='yes' BUILD_TESTS='test'
ENABLE_FORTRAN='no'
ENABLE_PARALLEL='no'
ENABLE_PYTHON='no'
############################################################################### ###############################################################################
# --enable-xxx and --with-xxx Arguments ################# --enable-xxx and --with-xxx Argument ########################
AC_ARG_ENABLE( ###############################################################################
[debug],
[AS_HELP_STRING([--enable-debug], [Compile with debug flags [default=no]])],
[ENABLE_DEBUG=$enableval])
AM_CONDITIONAL([ENABLE_DEBUG], [test "$ENABLE_DEBUG" = "yes"])
AC_ARG_ENABLE( AC_ARG_ENABLE(
[c], [debug],
[AS_HELP_STRING([--enable-c], [AC_HELP_STRING([--enable-debug],
[Compile the C interface [default=yes]])], [Compile with debug flags [default=no]])],
[ENABLE_C=$enableval]) [USE_DEBUG=$enableval])
AM_CONDITIONAL([ENABLE_C], [test "$ENABLE_C" = "yes"])
AC_ARG_ENABLE( AC_ARG_ENABLE(
[fortran], [fortran],
[AS_HELP_STRING([--enable-fortran], [AC_HELP_STRING([--enable-fortran],
[Compile the Fortran interface [default=no]])], [Compile the Fortran interface [default=no]])],
[ENABLE_FORTRAN=$enableval]) [USE_FORTRAN=$enableval])
AM_CONDITIONAL([ENABLE_FORTRAN], [test "$ENABLE_FORTRAN" = "yes"])
AC_ARG_ENABLE(
[python],
[AS_HELP_STRING([--enable-python],
[Compile the Python interface [default=no]])],
[ENABLE_PYTHON=$enableval])
AM_CONDITIONAL([ENABLE_PYTHON], [test "$ENABLE_PYTHON" = "yes"])
AC_ARG_ENABLE( AC_ARG_ENABLE(
[parallel], [parallel],
[AS_HELP_STRING([--enable-parallel], [AC_HELP_STRING([--enable-parallel],
[Compile the MPI/IO interface [default=no]])], [Compile the MPI/IO interface [default=no]])],
[ENABLE_PARALLEL=$enableval]) [USE_PARALLEL=$enableval])
AM_CONDITIONAL([ENABLE_PARALLEL], [test "$ENABLE_PARALLEL" = "yes"])
AC_ARG_ENABLE( AC_ARG_ENABLE(
[large-indices], [tools],
[AC_HELP_STRING([--enable-large-indices], [AC_HELP_STRING([--enable-tools],
[Compile with 64bit local IDs and indices [default=no]])], [Compile h5part tools [default=no]])],
[USE_LARGE_INDICES=$enableval]) [USE_TOOLS=$enableval])
AC_ARG_ENABLE(
[experimental],
[AS_HELP_STRING([--enable-experimental],
[Compile experimental code [default=no]])],
[ENABLE_EXPERIMENTAL=$enableval])
AM_CONDITIONAL([ENABLE_EXPERIMENTAL], [test "$ENABLE_EXPERIMENTAL" = "yes"])
AC_ARG_ENABLE(
[vtkconverter],
[AS_HELP_STRING([--enable-vtkconverter],
[Compile the vtk to H5hut converter for grids [default=no]])],
[ENABLE_VTKCONVERTER=$enableval])
AM_CONDITIONAL([ENABLE_VTKCONVERTER], [test "$ENABLE_VTKCONVERTER" = "yes"])
AC_ARG_ENABLE(
[examples],
[AS_HELP_STRING([--enable-examples],
[Compile the H5hut examples [default=no]])],
[ENABLE_EXAMPLES=$enableval])
AM_CONDITIONAL([ENABLE_EXAMPLES], [test "$ENABLE_EXAMPLES" = "yes"])
AC_ARG_WITH( AC_ARG_WITH(
[hdf5], [hdf5],
[AS_HELP_STRING([--with-hdf5], [AC_HELP_STRING([--with-hdf5],
[path to HDF5 installation [default=""]])], [path to HDF5 installation [default=""]])],
[HDF5_PREFIX=$withval], []) [HDF5PATH=$withval], [HDF5PATH=""])
AC_ARG_WITH( ###############################################################################
[mpi], ################# A SIMPLE WORK AROUND TO USE ENV. VARS #######################
[AS_HELP_STRING([--with-mpi], ###############################################################################
[path to MPI installation [default=""]])],
[PATH=$MPI_PREFIX/bin:$PATH])
AC_ARG_WITH(
[lustre],
[AS_HELP_STRING([--with-lustre],
[path to lustre user API [default=""]])],
[LUSTREPATH=$withval], [LUSTREPATH=""])
AC_ARG_WITH(
[parmetis],
[AC_HELP_STRING([--with-parmetis],
[path to ParMETIS API [default=""]])],
[PARMETIS_PREFIX=$withval], [])
AC_ARG_WITH(
[vtk],
[AC_HELP_STRING([--with-vtk],
[VTK installation path [default=""]])],
[VTK_PREFIX=$withval], [])
# Determine a C/C++ compiler to use.
if test "x$ENABLE_PARALLEL" = "xyes"; then
if test "x$MPICC" != "x"; then
CC=$MPICC
fi
if test "x$MPICXX" != "x"; then
CXX=$MPICXX
fi
if test "x$MPIFC" != "x"; then
FC=$MPIFC
else
FC=''
F77=''
F90=''
fi
c_compilers="mpicc cc"
cxx_compilers="mpic++ CC"
fc_compiler="mpif90 mpif77 mpifort"
else
c_compilers="pgcc pathcc icc gcc cc_r cc"
cxx_compilers="pgcc pathcc icc g++ cc_r c++"
fc_compiler="pgf90 ifort xlf_r pathf90 g95 g90 ftn gfortran"
fi
AC_PROG_CC($c_compilers)
if test "x$ac_cv_prog_cc_c89" = "xno"; then
AC_MSG_ERROR([C compiler not found!])
fi
AC_PROG_CXX($cxx_compilers)
if test "X$ENABLE_FORTRAN" = "Xyes"; then
AC_PROG_FC($fc_compiler)
if test "x$FC" = "x"; then
AC_MSG_ERROR([Fortran compiler not found!])
fi
fi
CC=`which $CC`
CXX=`which $CXX`
FC=`which $FC`
AX_CXX_COMPILE_STDCXX_11
AC_PROG_CC_C99
if test "x$ac_cv_prog_cc_c99" = "xno"; then
AC_MSG_ERROR([Cannot set C compiler to use C99 standard!])
fi
SAVE_CC=$CC
SAVE_CXX=$CXX
SAVE_FC=$FC
SAVE_CFLAGS=$CFLAGS
SAVE_CXXFLAGS=$CXXFLAGS
SAVE_FFLAGS=$FFLAGS
SAVE_INCLUDES=$INCLUDES
SAVE_LDFLAGS=$LDFLAGS
SAVE_LIBS=$LIBS
############################################################################### ###############################################################################
############### PATH SERACH FUNCTION - to be used later... #################### ############### PATH SERACH FUNCTION - to be used later... ####################
@@ -192,62 +99,45 @@ PATH_Search() {
return return
} }
###############################################################################
# MISC SETTINGS INCLUDING C & C++ COMPILER SETTING
###############################################################################
############# MISC SETTINGS INCLUDING C & C++ COMPILER SETTING ################
###############################################################################
# Compute the canonical host-system type variable, host, and its three
# individual parts host_cpu, host_vendor, and host_os.
AC_CANONICAL_HOST AC_CANONICAL_HOST
AC_PROG_MAKE_SET AC_PROG_MAKE_SET
CFLAGS="$CFLAGS -Wall" # Determine a C/C++ compiler to use.
CXXFLAGS="$CFLAGS -Wall" # If CC is not already set in the environment, check for gcc and cc, then
FFLAGS="$FFLAGS -Wall" # for other C compilers.
# Set output variable CC to the name of the compiler found.
# debug enabled? if test "x$USE_PARALLEL" = "xyes"; then
AC_MSG_CHECKING([if debug is enabled]) CCOMPILERS="mpicc cc"
if test "X$ENABLE_DEBUG" = "Xyes"; then CXXCOMPILERS="mpic++ mpicxx CC"
AC_MSG_RESULT([yes])
CFLAGS="$CFLAGS -g3 -O0"
CXXFLAGS="$CFLAGS -g3 -O0"
FFLAGS="$FFLAGS -g3 -O0"
else else
AC_MSG_RESULT([no]) CCOMPILERS="pgcc pathcc icc gcc cc_r cc"
CFLAGS="$CFLAGS -O3" CXXCOMPILERS="pgCC pathCC icpc g++"
CXXFLAGS="$CFLAGS -O3"
FFLAGS="$FFLAGS -O3"
fi fi
AC_PROG_CC($CCOMPILERS)
# Only need C++ for some of the tools
#if test "x$USE_TOOLS" = "xyes"; then
AC_PROG_CXX($CXXCOMPILERS)
#fi
# Set output variable INSTALL to the path of a BSD-compatible install program,
# if one is found in the current PATH.
# Otherwise, set INSTALL to `dir/install-sh -c`
AC_PROG_INSTALL AC_PROG_INSTALL
AC_PROG_AWK
# Disable shared libraries by default: can be enabled with --enable-shared AC_PROG_AWK
LT_INIT([disable-shared])
AC_PROG_LIBTOOL
# Default prefix for bindir, etc... (eg >> ./build/bin) # Default prefix for bindir, etc... (eg >> ./build/bin)
AC_PREFIX_DEFAULT(`pwd`/build) AC_PREFIX_DEFAULT(`pwd`/build)
# Checks for header files.
AC_CHECK_HEADERS([fcntl.h limits.h stdint.h stdlib.h string.h sys/ioctl.h unistd.h])
# Checks for typedefs, structures, and compiler characteristics.
AC_HEADER_STDBOOL
AC_C_INLINE
AC_TYPE_INT16_T
AC_TYPE_INT32_T
AC_TYPE_INT64_T
AC_TYPE_SIZE_T
AC_TYPE_SSIZE_T
AC_TYPE_UINT16_T
AC_TYPE_UINT32_T
AC_TYPE_UINT64_T
AC_CHECK_TYPES([ptrdiff_t])
# Checks for library functions.
AC_FUNC_MALLOC
AC_FUNC_REALLOC
AC_CHECK_FUNCS([memmove memset pow strchr strdup strerror strstr])
# AC_DEFINE_UNQUOTED (variable, value, [description]) # AC_DEFINE_UNQUOTED (variable, value, [description])
# Define the C preprocessor variable variable to value # Define the C preprocessor variable variable to value
# Use this macro instead of AC_DEFINE when variable or value is a shell variable. # Use this macro instead of AC_DEFINE when variable or value is a shell variable.
@@ -259,305 +149,268 @@ AC_DEFINE_UNQUOTED(MY_UNAME, "$uname", "")
############################################################################### ###############################################################################
# PROCESS ARGUMENTS ######################## CONFIGURE LINE OPTIONS ###############################
###############################################################################
AC_MSG_CHECKING([if debug is enabled])
if test "X$USE_DEBUG" = "Xyes"; then
AC_MSG_RESULT([yes])
CFLAGS="$CFLAGS -g"
CXXFLAGS="$CXXFLAGS -g"
FFLAGS="$FFLAGS -g"
else
AC_MSG_RESULT([no])
fi
############################ fortran enabled ##################################
AC_MSG_CHECKING([if fortran interface enabled])
if test "X$USE_FORTRAN" = "Xyes"; then
AC_MSG_RESULT([yes])
LIB_FORTRAN="libH5PartF.la"
BUILD_LIBS="$BUILD_LIBS libH5PartF"
BUILD_TESTS="$BUILD_TESTS testf"
if test "X$USE_PARALLEL" = "Xyes"; then
AC_PROG_FC(mpif90 mpif77 ftn)
else
AC_PROG_FC(pgf90 pathf90 ifort ftn xlf_r g95 g90 gfortran)
fi
if test -z "$FC" ; then
AC_MSG_ERROR([Cannot find a Fortran compiler!])
exit 1
fi
if test $FC = "g90"; then
FFLAGS="${FFLAGS} -fno-second-underscore"
fi
if test $FC = "g95"; then
FFLAGS="${FFLAGS} -fno-second-underscore"
fi
AC_MSG_CHECKING([symbol convention in object files])
`cd src && rm -f TestUnderscore.o TestUnderscoreC.o TestUnderscore`
`cd src && ${FC} ${FFLAGS} -c TestUnderscore.f`
`cd src && ${CC} ${CFLAGS} -c TestUnderscoreC.c`
`cd src && ${FC} ${FFLAGS} -o TestUnderscore TestUnderscore.o TestUnderscoreC.o`
if test -f src/TestUnderscore ; then
UNDERSCORE_H=Underscore.h
`cd src && ./TestUnderscore > Underscore.h`
AC_MSG_RESULT([ok])
else
AC_MSG_RESULT([nok])
AC_MSG_ERROR([Cannot determine the symbon convention for Fortran object files!])
exit 1
fi
else
AC_MSG_RESULT([no])
fi
# Disable shared libraries by default: can be enabled with --enable-shared
LT_INIT([disable-shared])
AC_PROG_LIBTOOL
######################## parallel interface enabled ###########################
AC_MSG_CHECKING([if parallel interface enabled])
if test "X$USE_PARALLEL" = "Xyes"; then
AC_MSG_RESULT([yes])
CFLAGS="${CFLAGS} -DPARALLEL_IO -DMPICH_IGNORE_CXX_SEEK"
CXXFLAGS="${CXXFLAGS} -DPARALLEL_IO -DMPICH_IGNORE_CXX_SEEK"
FFLAGS="${FFLAGS} -DPARALLEL_IO"
AC_MSG_CHECKING([if we can compile MPI code without setting flags])
AC_TRY_LINK([#include "mpi.h"], [
MPI_Comm comm;
int n;
MPI_Comm_size( comm, &n ); ],
[AC_MSG_RESULT([yes]); r='yes'], [AC_MSG_RESULT([no]); r='no'] )
if test "X$r" = "Xno"; then
AC_MSG_ERROR([MPI wrapper can't compile or link MPI program! Please set the INCLUDE and LIBS variables manually.])
exit 1
fi
else # --enable-parallel=no
AC_MSG_RESULT([no])
fi
######################## tools enabled ###########################
AC_MSG_CHECKING([whether tools are enabled])
if test "X$USE_TOOLS" = "Xyes"; then
AC_MSG_RESULT([yes])
BUILD_TOOLS="h5pAttrib h5pToGNUplot homdynToH5p"
# tools + parallel
if test "X$USE_PARALLEL" = "Xyes"; then
BUILD_TOOLS="${BUILD_TOOLS} H5PartBench H5BlockBench"
fi
else
AC_MSG_RESULT([no])
fi
############################################################################### ###############################################################################
# check libraries ######################### PATH CHECKING & SETTING #############################
###############################################################################
AC_CHECK_LIB([z], [compress2]) AC_MSG_CHECKING([for HDF5 root ])
# hdf5
if test -z "${HDF5_PREFIX}"; then
# alternatives to HDF5_PREFIX
if test -n "${HDF5_DIR}"; then
HDF5_PREFIX=${HDF5_DIR}
fi
fi
if test -n "${HDF5_PREFIX}"; then
CPPFLAGS="$CPPFLAGS -I$HDF5_PREFIX/include"
LDFLAGS="$LDFLAGS -L$HDF5_PREFIX/lib"
fi
AC_CHECK_LIB([hdf5], [H5open])
AS_IF([test "x$ac_cv_lib_hdf5_H5open" != xyes],
[AC_MSG_ERROR([Cannot compile and link a HDF5 program])])
AC_MSG_CHECKING([checking whether hdf5 lib supports parallel IO])
AC_COMPILE_IFELSE([AC_LANG_SOURCE([[
#include "hdf5.h"
#ifndef H5_HAVE_PARALLEL
# error macro not defined
#endif
]])], [H5_HAVE_PARALLEL="yes"], [H5_HAVE_PARALLEL="no"])
AC_MSG_RESULT([$H5_HAVE_PARALLEL])
# lustre
AC_MSG_CHECKING([for lustre API ])
AC_MSG_RESULT([]) AC_MSG_RESULT([])
if test -n "${LUSTREPATH}"; then if test -n "${HDF5PATH}" ; then
P=${LUSTREPATH} P=${HDF5PATH}
elif test -n "${LUSTREROOT}" ; then elif test -n "${HDF5ROOT}"; then
P=${LUSTREROOT} P=${HDF5ROOT}
elif test -n "${LUSTREHOME}" ; then elif test -n "${HDF5HOME}" ; then
P=${LUSTREHOME} P=${HDF5HOME}
elif test -n "${LUSTRE_DIR}" ; then elif test -n "${HDF5_DIR}" ; then
P=${LUSTRE_DIR} P=${HDF5_DIR}
else else
P='' P=''
P="$P /usr" P="$P /usr"
P="$P /usr/local" P="$P /usr/local"
P="$P /usr/local/lustre" P="$P /usr/local/hdf5"
P="$P /opt/lustre" P="$P /usr/local/packages/hdf5"
P="$P /apps/hdf5"
P="$P /opt/hdf5"
fi fi
PATH_Search LUSTREROOT "$P" usr/include/lustre/liblustreapi.h PATH_Search HDF5ROOT "$P" include/hdf5.h
if test -z "$LUSTREROOT"; then if test -z "$HDF5ROOT"; then
AC_MSG_WARN([Couldn't locate the lustre API... building without support for lustre striping!]) AC_MSG_ERROR([Cannot find an HDF5 library!])
else exit 1
CFLAGS="$CFLAGS -DH5_USE_LUSTRE"
CPPFLAGS="$CPPFLAGS -I$LUSTREROOT/usr/include"
LDFLAGS="$LDFLAGS -L$LUSTREROOT/usr/lib"
LIBS="$LIBS -llustreapi"
fi fi
LIBS="$LIBS -lm" INCLUDES="$INCLUDES -I$HDF5ROOT/include"
LDFLAGS="$LDFLAGS -L$HDF5ROOT/lib"
LIBS="$LIBS -lhdf5"
AC_MSG_CHECKING([if we need to link to libsz ])
if test -n "$HDF5ROOT"; then
############################ enabled bindings ############################### if test -f $HDF5ROOT/lib/libsz.a; then
# C enabled?
AC_MSG_CHECKING([if C interface enabled])
if test "X$ENABLE_C" = "Xyes"; then
AC_MSG_RESULT([yes])
else
AC_MSG_RESULT([no])
fi
# fortran enabled?
AC_MSG_CHECKING([if fortran interface enabled])
if test "X$ENABLE_FORTRAN" = "Xyes"; then
AC_MSG_RESULT([yes])
AC_LANG_PUSH(Fortran)
# Query Fortran symbol mangling. __AC_FC_NAME_MANGLING sets
# ac_cv_{f77,fc}_mangling. The value contains three fields, separated
# by commas:
#
# lower case / upper case:
# case translation of the Fortran symbols
# underscore / no underscore:
# whether the compiler appends "_" to symbol names
# extra underscore / no extra underscore:
# whether the compiler appends an extra "_" to symbol names already
# containing at least one underscore
__AC_FC_NAME_MANGLING
if test "X${ac_cv_fc_mangling}" == "Xlower case, no underscore, no extra underscore"; then
CPPFLAGS+=" -DFC_MANGLING_LOWERCASE_NO_UNDERSCORE"
elif test "X${ac_cv_fc_mangling}" == "Xlower case, underscore, no extra underscore"; then
CPPFLAGS+=" -DFC_MANGLING_LOWERCASE_SINGLE_UNDERSCORE"
elif test "X${ac_cv_fc_mangling}" == "Xlower case, underscore, extra underscore"; then
CPPFLAGS+=" -DFC_MANGLING_LOWERCASE_DOUBLE_UNDERSCORE"
elif test "X${ac_cv_fc_mangling}" == "Xupper case, no underscore, no extra underscore"; then
CPPFLAGS+=" -DFC_MANGLING_UPPERCASE_NO_UNDERSCORE"
elif test "X${ac_cv_fc_mangling}" == "Xupper case, underscore, no extra underscore"; then
CPPFLAGS+=" -DFC_MANGLING_UPPERCASE_SINGLE_UNDERSCORE"
elif test "X${ac_cv_fc_mangling}" == "Xupper case, underscore, extra underscore"; then
CPPFLAGS+=" -DFC_MANGLING_UPPERCASE_DOUBLE_UNDERSCORE"
fi
AC_LANG_POP(Fortran)
else
AC_MSG_RESULT([no])
fi
# python enabled?
if test "X$ENABLE_PYTHON" = "Xyes"; then
AM_PATH_PYTHON([2.5])
AX_PKG_SWIG([1.3], [], [ AC_MSG_ERROR([SWIG is required to build..]) ])
#SWIG_ENABLE_CXX
#SWIG_PYTHON
PYTHON_PREFIX=`python-config --prefix`
PYTHON_EXEC_PREFIX=`python-config --exec-prefix`
# make sure numpy is available..
AC_MSG_CHECKING([for numpy support])
NUMPY_INCLUDE=`${PYTHON} -c 'import numpy; print numpy.get_include()'`
if test "X$?" = "X0" ; then
AC_MSG_RESULT([$NUMPY_INCLUDE])
else
AC_MSG_RESULT([no])
exit 1
fi
AC_SUBST([NUMPY_INCLUDE])
#check for parallel support
if test "X$ENABLE_PARALLEL" = "Xyes"; then
AC_MSG_CHECKING([for mpi4py support])
MPI4PY_INCLUDE=`${PYTHON} -c 'import mpi4py; print mpi4py.get_include()'`
if test "X$?" = "X0" ; then
AC_MSG_RESULT([$MPI4PY_INCLUDE])
else
AC_MSG_RESULT([no])
exit 1
fi
AC_SUBST([MPI4PY_INCLUDE])
fi
AC_MSG_RESULT([ok])
else
AC_MSG_CHECKING([if python interface is enabled])
AC_MSG_RESULT([no])
fi
######################## large indices enabled ###########################
AC_MSG_CHECKING([if large indices are enabled])
if test "X$USE_LARGE_INDICES" = "Xyes"; then
AC_MSG_RESULT([yes])
CFLAGS="${CFLAGS} -DUSE_LARGE_INDICES"
else
AC_MSG_RESULT([no])
fi
######################## parallel interface enabled ###########################
AC_MSG_CHECKING([if parallel interface enabled])
if test "X$ENABLE_PARALLEL" = "Xyes"; then
AC_MSG_RESULT([yes])
AS_IF([test "x$H5_HAVE_PARALLEL" = "xno"],
[AC_MSG_ERROR([hdf5 does not support parallel IO!])])
if test "X$ENABLE_VTKCONVERTER" = "Xyes"; then
AC_MSG_ERROR([VTK to H5hut grid converter cannot be compiled parallel!])
fi
CPPFLAGS="${CPPFLAGS} -DPARALLEL_IO -DMPICH_IGNORE_CXX_SEEK"
if test "X$ENABLE_EXPERIMENTAL" = "Xyes"; then
CPPFLAGS="$CPPFLAGS -DWITH_PARALLEL_H5GRID"
AC_MSG_CHECKING([for ParMETIS])
if test "X$PARMETIS_PREFIX" != "X"; then
CPPFLAGS="$CPPFLAGS -I$PARMETIS_PREFIX/include"
LDFLAGS="$LDFLAGS -L$PARMETIS_PREFIX/lib"
fi
LIBS="$LIBS -lparmetis -lmetis"
AC_TRY_LINK([#include <parmetis.h>], [
ParMETIS_V3_PartGeom (NULL, NULL, NULL, NULL, NULL);],
[AC_MSG_RESULT([yes]); r='yes'], [AC_MSG_RESULT([no]); r='no'] )
if test "X$r" = "Xno"; then
AC_MSG_ERROR([ParMETIS])
fi
fi
else # --enable-parallel=no
AC_MSG_RESULT([no])
AS_IF([test "x$H5_HAVE_PARALLEL" = "xyes"],
[AC_MSG_ERROR([hdf5 with support for parallel IO cannot be used for non-parallel H5hut!])])
fi
###############################################################################
# TOOLS
AC_MSG_CHECKING([if we have to compile the VTK to H5hut grid converter])
if test "X$ENABLE_VTKCONVERTER" = "Xyes"; then
AC_MSG_RESULT([yes])
if test -n "$VTK_PREFIX"; then
SAVE_C_INCLUDE_PATH="$C_INCLUDE_PATH"
SAVE_CPLUS_INCLUDE_PATH="$CPLUS_INCLUDE_PATH"
SAVE_LIBRARY_PATH="$LIBRARY_PATH"
C_INCLUDE_PATH="$C_INCLUDE_PATH $VTK_PREFIX/include"
CPLUS_INCLUDE_PATH="$CPLUS_INCLUDE_PATH $VTK_PREFIX/include"
LIBRARY_PATH="$LIBRARY_PATH $VTK_PREFIX/lib"
fi
AC_MSG_CHECKING([VTK inlcude files])
VTK_INCLUDES=`cmake --find-package -DNAME=VTK -DCOMPILER_ID=GNU -DLANGUAGE=C -DMODE=COMPILE 2>/dev/null`
if test "X$?" != "X0"; then
AC_MSG_RESULT([no])
AC_MSG_ERROR([Cannot compile VTK to H5hut converter])
else
AC_MSG_RESULT([yes]) AC_MSG_RESULT([yes])
fi LDFLAGS="$LDFLAGS -L$HDF5ROOT/lib"
AC_MSG_CHECKING([VTK libraries]) LIBS="$LIBS -lsz"
VTK_LIBS=`cmake --find-package -DNAME=VTK -DCOMPILER_ID=GNU -DLANGUAGE=C -DMODE=LINK 2>/dev/null`
if test "X$?" != "X0"; then
AC_MSG_RESULT([no])
AC_MSG_ERROR([Cannot compile VTK to H5hut converter]);
else else
AC_MSG_RESULT([yes]) AC_MSG_RESULT([no])
fi fi
fi
else LIBS="$LIBS -lz -lm"
AC_MSG_RESULT([no])
# Checks for header files.
AC_CHECK_HEADERS([fcntl.h stdlib.h string.h unistd.h])
# Checks for typedefs, structures, and compiler characteristics.
AC_HEADER_STDBOOL
AC_TYPE_INT64_T
AC_TYPE_SIZE_T
AC_TYPE_SSIZE_T
# Checks for library functions.
AC_FUNC_MALLOC
AC_CHECK_FUNCS([memset pow strchr strdup])
###############################################################################
################# A SIMPLE WORK AROUND TO USE ENV. VARS #######################
###############################################################################
#if there was an external input for the variable...
if test -n "$SAVE_CC"; then
CC="$SAVE_CC"
fi
if test -n "$SAVE_CXX"; then
CXX="$SAVE_CXX"
fi
if test -n "$SAVE_FC"; then
FC="$SAVE_FC"
fi
if test -n "$SAVE_CFLAGS"; then
CFLAGS="$SAVE_CFLAGS"
fi
if test -n "$SAVE_CXXFLAGS"; then
CFLAGS="$SAVE_CXXFLAGS"
fi
if test -n "$SAVE_FFLAGS"; then
FFLAGS="$SAVE_FFLAGS"
fi
if test -n "$SAVE_INCLUDES"; then
INCLUDES="$SAVE_INCLUDES"
fi
if test -n "$SAVE_LDFLAGS"; then
LDFLAGS="$SAVE_LDFLAGS"
fi
if test -n "$SAVE_LIBS"; then
LIBS="$SAVE_LIBS"
fi fi
############################################################################### ###############################################################################
# EXAMPLES ############## EXPORTING VARIABLES & CREATING OUTPUT FILES ####################
AC_MSG_CHECKING([if we have to compile the H5hut examples])
if test "X$ENABLE_EXAMPLES" = "Xyes"; then
AC_MSG_RESULT([yes])
else
AC_MSG_RESULT([no])
fi
############################################################################### ###############################################################################
# EXPORTING VARIABLES & CREATING OUTPUT FILES # AC_SUBST (variable, [value])
AM_CPPFLAGS=$CPPFLAGS # Create an output variable from a shell variable. Make AC_OUTPUT substitute
AM_LDFLAGS=$LDFLAGS # the variable variable into output files (typically one or more `Makefile's).
# This means that AC_OUTPUT will replace instances of `@variable@' in input
AC_SUBST(HDF5_PREFIX) # files with the value that the shell variable variable has when AC_OUTPUT is
# called. This value of variable should not contain literal newlines. If
# value is given, in addition assign it to variable.
AC_SUBST(CFLAGS) AC_SUBST(CFLAGS)
AC_SUBST(CXXFLAGS)
AC_SUBST(FFLAGS) AC_SUBST(FFLAGS)
AC_SUBST(AM_CPPFLAGS) AC_SUBST(INCLUDES)
AC_SUBST(AM_LDFLAGS) AC_SUBST(LDFLAGS)
AC_SUBST(VTK_INCLUDES) AC_SUBST(LIBS)
AC_SUBST(VTK_LIBS) AC_SUBST(UNDERSCORE_H)
AC_SUBST(LIB_FORTRAN)
AC_SUBST(BUILD_TESTS)
AC_SUBST(BUILD_TOOLS)
# Make AC_OUTPUT create each `file' by copying an input file (by default `file.in'),
# substituting the output variable values.
AC_CONFIG_FILES([ AC_CONFIG_FILES([
Makefile Makefile
src/Makefile src/Makefile
src/h5core/Makefile doc/Makefile
src/include/Makefile
src/include/h5core/Makefile
src/C/Makefile
src/Fortran/Makefile
src/Python/Makefile
test/Makefile test/Makefile
doc/Makefile
tools/Makefile tools/Makefile
tools/h5hutcc
tools/vtk2h5grid/Makefile
examples/H5/Makefile
examples/H5Part/Makefile
examples/H5Block/Makefile
examples/H5Fed/Makefile
]) ])
AC_OUTPUT AC_OUTPUT
############################################################################### ###############################################################################
# PRINTING SUMMARY ########################## PRINTING SUMMARY ###################################
###############################################################################
AC_MSG_RESULT([ ]) AC_MSG_RESULT([ ])
AC_MSG_RESULT([Summary:]) AC_MSG_RESULT([Summary:])
AC_MSG_RESULT([ ]) AC_MSG_RESULT([ ])
AC_MSG_RESULT([Host OS: $host_os]) AC_MSG_RESULT([Host OS: $host_os])
AC_MSG_RESULT([Host CPU: $host_cpu]) AC_MSG_RESULT([Host CPU: $host_cpu])
AC_MSG_RESULT([Host vendor: $host_vendor]) AC_MSG_RESULT([Host vendor: $host_vendor])
AC_MSG_RESULT([Build libraries: $BUILD_LIBS])
AC_MSG_RESULT([Build test programs: $BUILD_TESTS])
AC_MSG_RESULT([Build tools: $BUILD_TOOLS])
AC_MSG_RESULT([CC = $CC]) AC_MSG_RESULT([CC = $CC])
AC_MSG_RESULT([CXX = $CXX]) AC_MSG_RESULT([CXX = $CXX])
AC_MSG_RESULT([FC = $FC]) AC_MSG_RESULT([FC = $FC])
AC_MSG_RESULT([CFLAGS = $CFLAGS]) AC_MSG_RESULT([CFLAGS = $CFLAGS])
AC_MSG_RESULT([CXXFLAGS = $CXXFLAGS])
AC_MSG_RESULT([FFLAGS = $FFLAGS]) AC_MSG_RESULT([FFLAGS = $FFLAGS])
AC_MSG_RESULT([AM_CPPFLAGS = $AM_CPPFLAGS]) AC_MSG_RESULT([INCLUDES = $INCLUDES])
AC_MSG_RESULT([AM_LDFLAGS = $AM_LDFLAGS]) AC_MSG_RESULT([LDFLAGS = $LDFLAGS])
AC_MSG_RESULT([LIBS = $LIBS]) AC_MSG_RESULT([LIBS = $LIBS])
AC_MSG_RESULT([HDF5_PREFIX = $HDF5_PREFIX]) AC_MSG_RESULT([HDF5ROOT = $HDF5ROOT])
AC_MSG_RESULT([LUSTREROOT = $LUSTREROOT])
if test "x$ENABLE_PYTHON" = "xyes"; then
AC_MSG_RESULT([PYTHON = $PYTHON])
AC_MSG_RESULT([SWIG = $SWIG])
AC_MSG_RESULT([NUMPY_INCLUDE = $NUMPY_INCLUDE])
if test "x$ENABLE_PARALLEL" = "xyes"; then
AC_MSG_RESULT([MPI4PY_INCLUDE = $MPI4PY_INCLUDE])
fi
fi
AC_MSG_RESULT([ ]) AC_MSG_RESULT([ ])
depcomp
Executable
+529
View File
@@ -0,0 +1,529 @@
#! /bin/sh
# depcomp - compile a program generating dependencies as side-effects
scriptversion=2005-02-09.22
# Copyright (C) 1999, 2000, 2003, 2004, 2005 Free Software Foundation, Inc.
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2, or (at your option)
# any later version.
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
# You should have received a copy of the GNU General Public License
# along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA
# 02111-1307, USA.
# As a special exception to the GNU General Public License, if you
# distribute this file as part of a program that contains a
# configuration script generated by Autoconf, you may include it under
# the same distribution terms that you use for the rest of that program.
# Originally written by Alexandre Oliva <oliva@dcc.unicamp.br>.
case $1 in
'')
echo "$0: No command. Try \`$0 --help' for more information." 1>&2
exit 1;
;;
-h | --h*)
cat <<\EOF
Usage: depcomp [--help] [--version] PROGRAM [ARGS]
Run PROGRAMS ARGS to compile a file, generating dependencies
as side-effects.
Environment variables:
depmode Dependency tracking mode.
source Source file read by `PROGRAMS ARGS'.
object Object file output by `PROGRAMS ARGS'.
DEPDIR directory where to store dependencies.
depfile Dependency file to output.
tmpdepfile Temporary file to use when outputing dependencies.
libtool Whether libtool is used (yes/no).
Report bugs to <bug-automake@gnu.org>.
EOF
exit $?
;;
-v | --v*)
echo "depcomp $scriptversion"
exit $?
;;
esac
if test -z "$depmode" || test -z "$source" || test -z "$object"; then
echo "depcomp: Variables source, object and depmode must be set" 1>&2
exit 1
fi
# Dependencies for sub/bar.o or sub/bar.obj go into sub/.deps/bar.Po.
depfile=${depfile-`echo "$object" |
sed 's|[^\\/]*$|'${DEPDIR-.deps}'/&|;s|\.\([^.]*\)$|.P\1|;s|Pobj$|Po|'`}
tmpdepfile=${tmpdepfile-`echo "$depfile" | sed 's/\.\([^.]*\)$/.T\1/'`}
rm -f "$tmpdepfile"
# Some modes work just like other modes, but use different flags. We
# parameterize here, but still list the modes in the big case below,
# to make depend.m4 easier to write. Note that we *cannot* use a case
# here, because this file can only contain one case statement.
if test "$depmode" = hp; then
# HP compiler uses -M and no extra arg.
gccflag=-M
depmode=gcc
fi
if test "$depmode" = dashXmstdout; then
# This is just like dashmstdout with a different argument.
dashmflag=-xM
depmode=dashmstdout
fi
case "$depmode" in
gcc3)
## gcc 3 implements dependency tracking that does exactly what
## we want. Yay! Note: for some reason libtool 1.4 doesn't like
## it if -MD -MP comes after the -MF stuff. Hmm.
"$@" -MT "$object" -MD -MP -MF "$tmpdepfile"
stat=$?
if test $stat -eq 0; then :
else
rm -f "$tmpdepfile"
exit $stat
fi
mv "$tmpdepfile" "$depfile"
;;
gcc)
## There are various ways to get dependency output from gcc. Here's
## why we pick this rather obscure method:
## - Don't want to use -MD because we'd like the dependencies to end
## up in a subdir. Having to rename by hand is ugly.
## (We might end up doing this anyway to support other compilers.)
## - The DEPENDENCIES_OUTPUT environment variable makes gcc act like
## -MM, not -M (despite what the docs say).
## - Using -M directly means running the compiler twice (even worse
## than renaming).
if test -z "$gccflag"; then
gccflag=-MD,
fi
"$@" -Wp,"$gccflag$tmpdepfile"
stat=$?
if test $stat -eq 0; then :
else
rm -f "$tmpdepfile"
exit $stat
fi
rm -f "$depfile"
echo "$object : \\" > "$depfile"
alpha=ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz
## The second -e expression handles DOS-style file names with drive letters.
sed -e 's/^[^:]*: / /' \
-e 's/^['$alpha']:\/[^:]*: / /' < "$tmpdepfile" >> "$depfile"
## This next piece of magic avoids the `deleted header file' problem.
## The problem is that when a header file which appears in a .P file
## is deleted, the dependency causes make to die (because there is
## typically no way to rebuild the header). We avoid this by adding
## dummy dependencies for each header file. Too bad gcc doesn't do
## this for us directly.
tr ' ' '
' < "$tmpdepfile" |
## Some versions of gcc put a space before the `:'. On the theory
## that the space means something, we add a space to the output as
## well.
## Some versions of the HPUX 10.20 sed can't process this invocation
## correctly. Breaking it into two sed invocations is a workaround.
sed -e 's/^\\$//' -e '/^$/d' -e '/:$/d' | sed -e 's/$/ :/' >> "$depfile"
rm -f "$tmpdepfile"
;;
hp)
# This case exists only to let depend.m4 do its work. It works by
# looking at the text of this script. This case will never be run,
# since it is checked for above.
exit 1
;;
sgi)
if test "$libtool" = yes; then
"$@" "-Wp,-MDupdate,$tmpdepfile"
else
"$@" -MDupdate "$tmpdepfile"
fi
stat=$?
if test $stat -eq 0; then :
else
rm -f "$tmpdepfile"
exit $stat
fi
rm -f "$depfile"
if test -f "$tmpdepfile"; then # yes, the sourcefile depend on other files
echo "$object : \\" > "$depfile"
# Clip off the initial element (the dependent). Don't try to be
# clever and replace this with sed code, as IRIX sed won't handle
# lines with more than a fixed number of characters (4096 in
# IRIX 6.2 sed, 8192 in IRIX 6.5). We also remove comment lines;
# the IRIX cc adds comments like `#:fec' to the end of the
# dependency line.
tr ' ' '
' < "$tmpdepfile" \
| sed -e 's/^.*\.o://' -e 's/#.*$//' -e '/^$/ d' | \
tr '
' ' ' >> $depfile
echo >> $depfile
# The second pass generates a dummy entry for each header file.
tr ' ' '
' < "$tmpdepfile" \
| sed -e 's/^.*\.o://' -e 's/#.*$//' -e '/^$/ d' -e 's/$/:/' \
>> $depfile
else
# The sourcefile does not contain any dependencies, so just
# store a dummy comment line, to avoid errors with the Makefile
# "include basename.Plo" scheme.
echo "#dummy" > "$depfile"
fi
rm -f "$tmpdepfile"
;;
aix)
# The C for AIX Compiler uses -M and outputs the dependencies
# in a .u file. In older versions, this file always lives in the
# current directory. Also, the AIX compiler puts `$object:' at the
# start of each line; $object doesn't have directory information.
# Version 6 uses the directory in both cases.
stripped=`echo "$object" | sed 's/\(.*\)\..*$/\1/'`
tmpdepfile="$stripped.u"
if test "$libtool" = yes; then
"$@" -Wc,-M
else
"$@" -M
fi
stat=$?
if test -f "$tmpdepfile"; then :
else
stripped=`echo "$stripped" | sed 's,^.*/,,'`
tmpdepfile="$stripped.u"
fi
if test $stat -eq 0; then :
else
rm -f "$tmpdepfile"
exit $stat
fi
if test -f "$tmpdepfile"; then
outname="$stripped.o"
# Each line is of the form `foo.o: dependent.h'.
# Do two passes, one to just change these to
# `$object: dependent.h' and one to simply `dependent.h:'.
sed -e "s,^$outname:,$object :," < "$tmpdepfile" > "$depfile"
sed -e "s,^$outname: \(.*\)$,\1:," < "$tmpdepfile" >> "$depfile"
else
# The sourcefile does not contain any dependencies, so just
# store a dummy comment line, to avoid errors with the Makefile
# "include basename.Plo" scheme.
echo "#dummy" > "$depfile"
fi
rm -f "$tmpdepfile"
;;
icc)
# Intel's C compiler understands `-MD -MF file'. However on
# icc -MD -MF foo.d -c -o sub/foo.o sub/foo.c
# ICC 7.0 will fill foo.d with something like
# foo.o: sub/foo.c
# foo.o: sub/foo.h
# which is wrong. We want:
# sub/foo.o: sub/foo.c
# sub/foo.o: sub/foo.h
# sub/foo.c:
# sub/foo.h:
# ICC 7.1 will output
# foo.o: sub/foo.c sub/foo.h
# and will wrap long lines using \ :
# foo.o: sub/foo.c ... \
# sub/foo.h ... \
# ...
"$@" -MD -MF "$tmpdepfile"
stat=$?
if test $stat -eq 0; then :
else
rm -f "$tmpdepfile"
exit $stat
fi
rm -f "$depfile"
# Each line is of the form `foo.o: dependent.h',
# or `foo.o: dep1.h dep2.h \', or ` dep3.h dep4.h \'.
# Do two passes, one to just change these to
# `$object: dependent.h' and one to simply `dependent.h:'.
sed "s,^[^:]*:,$object :," < "$tmpdepfile" > "$depfile"
# Some versions of the HPUX 10.20 sed can't process this invocation
# correctly. Breaking it into two sed invocations is a workaround.
sed 's,^[^:]*: \(.*\)$,\1,;s/^\\$//;/^$/d;/:$/d' < "$tmpdepfile" |
sed -e 's/$/ :/' >> "$depfile"
rm -f "$tmpdepfile"
;;
tru64)
# The Tru64 compiler uses -MD to generate dependencies as a side
# effect. `cc -MD -o foo.o ...' puts the dependencies into `foo.o.d'.
# At least on Alpha/Redhat 6.1, Compaq CCC V6.2-504 seems to put
# dependencies in `foo.d' instead, so we check for that too.
# Subdirectories are respected.
dir=`echo "$object" | sed -e 's|/[^/]*$|/|'`
test "x$dir" = "x$object" && dir=
base=`echo "$object" | sed -e 's|^.*/||' -e 's/\.o$//' -e 's/\.lo$//'`
if test "$libtool" = yes; then
# With Tru64 cc, shared objects can also be used to make a
# static library. This mecanism is used in libtool 1.4 series to
# handle both shared and static libraries in a single compilation.
# With libtool 1.4, dependencies were output in $dir.libs/$base.lo.d.
#
# With libtool 1.5 this exception was removed, and libtool now
# generates 2 separate objects for the 2 libraries. These two
# compilations output dependencies in in $dir.libs/$base.o.d and
# in $dir$base.o.d. We have to check for both files, because
# one of the two compilations can be disabled. We should prefer
# $dir$base.o.d over $dir.libs/$base.o.d because the latter is
# automatically cleaned when .libs/ is deleted, while ignoring
# the former would cause a distcleancheck panic.
tmpdepfile1=$dir.libs/$base.lo.d # libtool 1.4
tmpdepfile2=$dir$base.o.d # libtool 1.5
tmpdepfile3=$dir.libs/$base.o.d # libtool 1.5
tmpdepfile4=$dir.libs/$base.d # Compaq CCC V6.2-504
"$@" -Wc,-MD
else
tmpdepfile1=$dir$base.o.d
tmpdepfile2=$dir$base.d
tmpdepfile3=$dir$base.d
tmpdepfile4=$dir$base.d
"$@" -MD
fi
stat=$?
if test $stat -eq 0; then :
else
rm -f "$tmpdepfile1" "$tmpdepfile2" "$tmpdepfile3" "$tmpdepfile4"
exit $stat
fi
for tmpdepfile in "$tmpdepfile1" "$tmpdepfile2" "$tmpdepfile3" "$tmpdepfile4"
do
test -f "$tmpdepfile" && break
done
if test -f "$tmpdepfile"; then
sed -e "s,^.*\.[a-z]*:,$object:," < "$tmpdepfile" > "$depfile"
# That's a tab and a space in the [].
sed -e 's,^.*\.[a-z]*:[ ]*,,' -e 's,$,:,' < "$tmpdepfile" >> "$depfile"
else
echo "#dummy" > "$depfile"
fi
rm -f "$tmpdepfile"
;;
#nosideeffect)
# This comment above is used by automake to tell side-effect
# dependency tracking mechanisms from slower ones.
dashmstdout)
# Important note: in order to support this mode, a compiler *must*
# always write the preprocessed file to stdout, regardless of -o.
"$@" || exit $?
# Remove the call to Libtool.
if test "$libtool" = yes; then
while test $1 != '--mode=compile'; do
shift
done
shift
fi
# Remove `-o $object'.
IFS=" "
for arg
do
case $arg in
-o)
shift
;;
$object)
shift
;;
*)
set fnord "$@" "$arg"
shift # fnord
shift # $arg
;;
esac
done
test -z "$dashmflag" && dashmflag=-M
# Require at least two characters before searching for `:'
# in the target name. This is to cope with DOS-style filenames:
# a dependency such as `c:/foo/bar' could be seen as target `c' otherwise.
"$@" $dashmflag |
sed 's:^[ ]*[^: ][^:][^:]*\:[ ]*:'"$object"'\: :' > "$tmpdepfile"
rm -f "$depfile"
cat < "$tmpdepfile" > "$depfile"
tr ' ' '
' < "$tmpdepfile" | \
## Some versions of the HPUX 10.20 sed can't process this invocation
## correctly. Breaking it into two sed invocations is a workaround.
sed -e 's/^\\$//' -e '/^$/d' -e '/:$/d' | sed -e 's/$/ :/' >> "$depfile"
rm -f "$tmpdepfile"
;;
dashXmstdout)
# This case only exists to satisfy depend.m4. It is never actually
# run, as this mode is specially recognized in the preamble.
exit 1
;;
makedepend)
"$@" || exit $?
# Remove any Libtool call
if test "$libtool" = yes; then
while test $1 != '--mode=compile'; do
shift
done
shift
fi
# X makedepend
shift
cleared=no
for arg in "$@"; do
case $cleared in
no)
set ""; shift
cleared=yes ;;
esac
case "$arg" in
-D*|-I*)
set fnord "$@" "$arg"; shift ;;
# Strip any option that makedepend may not understand. Remove
# the object too, otherwise makedepend will parse it as a source file.
-*|$object)
;;
*)
set fnord "$@" "$arg"; shift ;;
esac
done
obj_suffix="`echo $object | sed 's/^.*\././'`"
touch "$tmpdepfile"
${MAKEDEPEND-makedepend} -o"$obj_suffix" -f"$tmpdepfile" "$@"
rm -f "$depfile"
cat < "$tmpdepfile" > "$depfile"
sed '1,2d' "$tmpdepfile" | tr ' ' '
' | \
## Some versions of the HPUX 10.20 sed can't process this invocation
## correctly. Breaking it into two sed invocations is a workaround.
sed -e 's/^\\$//' -e '/^$/d' -e '/:$/d' | sed -e 's/$/ :/' >> "$depfile"
rm -f "$tmpdepfile" "$tmpdepfile".bak
;;
cpp)
# Important note: in order to support this mode, a compiler *must*
# always write the preprocessed file to stdout.
"$@" || exit $?
# Remove the call to Libtool.
if test "$libtool" = yes; then
while test $1 != '--mode=compile'; do
shift
done
shift
fi
# Remove `-o $object'.
IFS=" "
for arg
do
case $arg in
-o)
shift
;;
$object)
shift
;;
*)
set fnord "$@" "$arg"
shift # fnord
shift # $arg
;;
esac
done
"$@" -E |
sed -n '/^# [0-9][0-9]* "\([^"]*\)".*/ s:: \1 \\:p' |
sed '$ s: \\$::' > "$tmpdepfile"
rm -f "$depfile"
echo "$object : \\" > "$depfile"
cat < "$tmpdepfile" >> "$depfile"
sed < "$tmpdepfile" '/^$/d;s/^ //;s/ \\$//;s/$/ :/' >> "$depfile"
rm -f "$tmpdepfile"
;;
msvisualcpp)
# Important note: in order to support this mode, a compiler *must*
# always write the preprocessed file to stdout, regardless of -o,
# because we must use -o when running libtool.
"$@" || exit $?
IFS=" "
for arg
do
case "$arg" in
"-Gm"|"/Gm"|"-Gi"|"/Gi"|"-ZI"|"/ZI")
set fnord "$@"
shift
shift
;;
*)
set fnord "$@" "$arg"
shift
shift
;;
esac
done
"$@" -E |
sed -n '/^#line [0-9][0-9]* "\([^"]*\)"/ s::echo "`cygpath -u \\"\1\\"`":p' | sort | uniq > "$tmpdepfile"
rm -f "$depfile"
echo "$object : \\" > "$depfile"
. "$tmpdepfile" | sed 's% %\\ %g' | sed -n '/^\(.*\)$/ s:: \1 \\:p' >> "$depfile"
echo " " >> "$depfile"
. "$tmpdepfile" | sed 's% %\\ %g' | sed -n '/^\(.*\)$/ s::\1\::p' >> "$depfile"
rm -f "$tmpdepfile"
;;
none)
exec "$@"
;;
*)
echo "Unknown depmode $depmode" 1>&2
exit 1
;;
esac
exit 0
# Local Variables:
# mode: shell-script
# sh-indentation: 2
# eval: (add-hook 'write-file-hooks 'time-stamp)
# time-stamp-start: "scriptversion="
# time-stamp-format: "%:y-%02m-%02d.%02H"
# time-stamp-end: "$"
# End:
doc/Doxyfile
+58 -2212
View File
File diff suppressed because it is too large Load Diff
doc/Examples/meshexample.dxf
-47962
View File
File diff suppressed because it is too large Load Diff
doc/Examples/meshexample.txt
-77
View File
@@ -1,77 +0,0 @@
NumLevels: 2
NumVerticesOnLevel: 11 20 29
Vertices:
1 0.0 0.0
2 60.0 -70.0
3 90.0 -10.0
4 140.0 -70.0
5 180.0 -10.0
6 240.0 -60.0
7 220.0 60.0
8 140.0 90.0
9 200.0 120.0
10 130.0 150.0
11 50.0 80.0
12 115.0 40.0
13 95.0 85.0
14 70.0 35.0
15 160.0 -40.0
16 135.0 -10.0
17 115.0 -40.0
18 200.0 25.0
19 180.0 75.0
20 160.0 40.0
21 125.0 15.0
22 112.5 -10.0
23 102.5 15.0
24 147.5 15.0
25 137.5 40.0
26 150.0 65.0
27 127.5 65.0
28 117.5 87.5
29 105.0 62.5
NumElemsOnLevel: 12 24 36
NumElems: 12 28 44
Elements:
ID PID CID VertexIDs Adj Translation Tbl (dim num lvls - 1)
1 -1 -1 1 2 3 2 11 -1 1
2 -1 -1 2 3 4 3 -1 1 2
3 -1 12 3 4 5 4 12 2 -1
4 -1 -1 4 5 6 5 -1 3 3
5 -1 -1 5 7 6 -1 4 6 4
6 -1 17 8 5 7 5 7 12 -1
7 -1 -1 8 9 7 -1 6 8 5
8 -1 -1 10 8 9 7 -1 9 6
9 -1 -1 11 10 8 8 10 -1 7
10 -1 25 11 3 8 12 9 11 -1
11 -1 -1 1 11 3 10 1 -1 8
12 -1 21 3 8 5 6 3 10 -1
13 3 -1 3 14 13 16 21 2 9
14 3 -1 14 4 12 4 16 2 10
15 3 -1 13 12 5 4 23 16 11
16 3 -1 14 13 12 15 14 13 12
17 6 -1 8 17 16 20 5 22 13
18 6 -1 17 5 15 5 20 23 14
19 6 -1 16 15 7 5 7 20 15
20 6 -1 17 16 15 19 18 17 16
21 12 -1 3 18 13 24 13 26 17
22 12 -1 18 8 17 17 24 27 18
23 12 -1 13 17 5 18 15 24 19
24 12 -1 18 13 17 23 22 21 20
25 10 -1 11 20 19 28 9 11 21
26 10 -1 20 3 18 21 28 11 22
27 10 -1 19 18 8 22 9 28 23
28 10 -1 20 3 18 27 26 25 24
3,0 3,1 4,2 2,3 16,4
1 2 -1 3 4
1 2 3
1 3 6
2 11 1 13 14
doc/Examples/simple_tet.vtk
-107
View File
@@ -1,107 +0,0 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 17 DOUBLE
-1 0 0
1 0 0
0 1 0
0 0 1
0 -1 0
-0.5 0 0.5
-0.5 0.5 0
0 0 0
0 0.5 0.5
0.5 0 0.5
0.5 0.5 0
-0.75 0 0.25
-0.75 0.25 0
-0.5 0 0
-0.5 0.25 0.25
-0.25 0 0.25
-0.25 0.25 0
CELLS 18 90
4 0 3 2 1
4 0 4 3 1
4 0 5 6 7
4 5 3 8 9
4 6 8 2 10
4 7 9 10 1
4 5 6 7 9
4 5 6 8 9
4 6 7 9 10
4 6 8 9 10
4 0 11 12 13
4 11 5 14 15
4 12 14 6 16
4 13 15 16 7
4 11 12 13 15
4 11 12 14 15
4 12 13 15 16
4 12 14 15 16
CELL_TYPES 18
10
10
10
10
10
10
10
10
10
10
10
10
10
10
10
10
10
10
POINT_DATA 17
SCALARS vertex_id int 1
LOOKUP_TABLE default
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
CELL_DATA 18
SCALARS cell_attribute_data int 1
LOOKUP_TABLE default
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
doc/Examples/simple_tet_level0.vtk
-59
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@@ -1,59 +0,0 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 17 DOUBLE
-1 0 0
1 0 0
0 1 0
0 0 1
0 -1 0
-0.5 0 0.5
-0.5 0.5 0
0 0 0
0 0.5 0.5
0.5 0 0.5
0.5 0.5 0
-0.75 0 0.25
-0.75 0.25 0
-0.5 0 0
-0.5 0.25 0.25
-0.25 0 0.25
-0.25 0.25 0
CELLS 2 10
4 0 3 2 1
4 0 4 3 1
CELL_TYPES 2
10
10
POINT_DATA 17
SCALARS vertex_id int 1
LOOKUP_TABLE default
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
CELL_DATA 2
SCALARS cell_attribute_data int 1
LOOKUP_TABLE default
0
1
doc/Examples/simple_tet_level1.vtk
-80
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@@ -1,80 +0,0 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 17 DOUBLE
-1 0 0
1 0 0
0 1 0
0 0 1
0 -1 0
-0.5 0 0.5
-0.5 0.5 0
0 0 0
0 0.5 0.5
0.5 0 0.5
0.5 0.5 0
-0.75 0 0.25
-0.75 0.25 0
-0.5 0 0
-0.5 0.25 0.25
-0.25 0 0.25
-0.25 0.25 0
CELLS 9 45
4 0 4 3 1
4 0 5 6 7
4 5 3 8 9
4 6 8 2 10
4 7 9 10 1
4 5 6 7 9
4 5 6 8 9
4 6 7 9 10
4 6 8 9 10
CELL_TYPES 9
10
10
10
10
10
10
10
10
10
POINT_DATA 17
SCALARS vertex_id int 1
LOOKUP_TABLE default
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
CELL_DATA 9
SCALARS cell_attribute_data int 1
LOOKUP_TABLE default
0
1
2
3
4
5
6
7
8
doc/Examples/simple_tet_level2.vtk
-101
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@@ -1,101 +0,0 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 17 DOUBLE
-1 0 0
1 0 0
0 1 0
0 0 1
0 -1 0
-0.5 0 0.5
-0.5 0.5 0
0 0 0
0 0.5 0.5
0.5 0 0.5
0.5 0.5 0
-0.75 0 0.25
-0.75 0.25 0
-0.5 0 0
-0.5 0.25 0.25
-0.25 0 0.25
-0.25 0.25 0
CELLS 16 80
4 0 4 3 1
4 5 3 8 9
4 6 8 2 10
4 7 9 10 1
4 5 6 7 9
4 5 6 8 9
4 6 7 9 10
4 6 8 9 10
4 0 11 12 13
4 11 5 14 15
4 12 14 6 16
4 13 15 16 7
4 11 12 13 15
4 11 12 14 15
4 12 13 15 16
4 12 14 15 16
CELL_TYPES 16
10
10
10
10
10
10
10
10
10
10
10
10
10
10
10
10
POINT_DATA 17
SCALARS vertex_id int 1
LOOKUP_TABLE default
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
CELL_DATA 16
SCALARS cell_attribute_data int 1
LOOKUP_TABLE default
1
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
doc/Examples/trimesh_dgraph_level0.metis
-13
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@@ -1,13 +0,0 @@
12 14
2 11
1 3
2 4 12
3 5
4 6
5 7 12
6 8
7 9
8 10
9 11 12
1 10
3 6 10
doc/Examples/trimesh_dgraph_level0.metis.part.2
-12
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@@ -1,12 +0,0 @@
0
1
1
1
1
1
0
0
0
0
0
1
doc/Examples/trimesh_dgraph_level0.metis.part.3
-12
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@@ -1,12 +0,0 @@
1
1
2
2
2
0
0
0
0
1
1
2
doc/Examples/trimesh_dnode_level1.metis
-49
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@@ -1,49 +0,0 @@
24 35
%1
2 8
%2
1 9 10
%3
4 10 11
%4
3 14 15
%5
6 13 15
%6
5 7
%7
6 21 23
%8
1 21 22
%9
2 12 17
%10
2 3 12
%11
3 12 19
%12
9 10 11
%13
5 16 18
%14
4 16 19
%15
4 5 16
%16
13 14 15
%17
9 20 22
%18
13 20 23
%19
11 14 20
%20
17 18 19
%21
7 8 24
%22
8 17 24
%23
7 18 24
%24
21 22 23
doc/Examples/trimesh_dnode_level1.metis.part.2
-24
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@@ -1,24 +0,0 @@
1
1
0
0
0
0
1
1
1
1
0
1
0
0
0
0
1
0
0
0
1
1
1
1
doc/Examples/trimesh_level0.metis
-13
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@@ -1,13 +0,0 @@
12 1
1 2 3
2 3 4
3 4 6
4 5 6
5 6 7
6 7 8
7 8 11
8 10 11
8 9 10
3 8 9
1 3 9
3 6 8
doc/Examples/trimesh_level0.metis.epart.2
-12
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@@ -1,12 +0,0 @@
1
1
1
1
0
0
0
0
0
0
1
1
doc/Examples/trimesh_level0.metis.ngraph
-12
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@@ -1,12 +0,0 @@
11 22
2 3 9
1 3 4
1 2 4 6 8 9
2 3 6 5
4 6 7
3 4 5 7 8
5 6 8 11
6 7 11 10 9 3
8 10 3 1
8 11 9
7 8 10
doc/Examples/trimesh_level0.metis.npart.2
-11
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@@ -1,11 +0,0 @@
1
1
1
1
1
0
0
0
0
0
0
doc/Examples/trimesh_level1.metis
-41
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@@ -1,41 +0,0 @@
20 43
%1
2 3 11
%2
1 3 4
%3
1 2 14 13 18 20
%4
2 14 12 6
%5
12 6 15 17 13
%6
4 5 7
%7
6 15 16 9
%8
9 10 19 18 17 16
%9
7 8 10
%10
8 9 11
%11
1 20 19 10
%12
4 14 13 5
%13
3 14 12 5 17 18
%14
3 13 12 4
%15
5 17 17 7
%16
7 8 17 15
%17
5 15 16 8 18 13
%18
3 13 17 8 19 20
%19
8 11 20 18
%20
3 18 19 11
doc/Examples/trimesh_level1.metis.part.2
-20
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@@ -1,20 +0,0 @@
1
1
1
0
0
0
0
1
1
1
1
0
0
0
0
0
0
1
1
1
doc/H5.dox
-171
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@@ -1,171 +0,0 @@
/*!
\mainpage H5hut: A High-Performance I/O Library for Particle-based Simulations
Particle-based simulations running on large high-performance computing systems
over many time steps can generate an enormous amount of particle- and
field-based data for post-processing and analysis. Achieving high-performance
I/O for this data, effectively managing it on disk, and interfacing it with
analysis and visualization tools can be challenging, especially for domain
scientists who do not have I/O and data management expertise. We present the
H5hut library, an implementation of several data models for particle-based
simulations that encapsulates the complexity of HDF5 and is simple to use, yet
does not compromise performance.
Developers:
<UL>
<LI> Andreas Adelmann (PSI) </LI>
<LI> Achim Gsell (PSI) </LI>
<LI> Mark Howison (NERSC/LBNL) </LI>
<LI> Prabhat (NERSC/LBNL) </LI>
<LI> Wes Bethel (NERSC/LBNL) </LI>
</UL>
Previous developers:
<UL>
<LI> Benedikt Oswald (PSI) </LI>
<LI> Cristina Siegerist (NERSC/LBNL)</LI>
<LI> John Shalf (NERSC/LBNL)</LI>
</UL>
For more information, please contact the
<a href="mailto:h5part@lists.psi.ch">h5part</a> mailing list.
\defgroup c_api C API
@{
\note The C API is implemented with '\c static \c inline' functions to minimize overhead.
\defgroup h5_c_api H5
@{
\defgroup h5_file File interface
In this section we document the interface for accessing H5hut files.
\defgroup h5_model Setting up the data model
The fundamental data model of H5hut is pretty simple. There
are (time-)steps to group data, that's it. In this section we
document the interface to these (time-)steps.
\defgroup h5_file_attribs File attributes interface
File attributes are small datasets that can be used to
describe specific properties of a file. The H5hut API provides
functions to attach (write), read and inquire file attributes.
\defgroup h5_step_attribs Step attributes interface
Step attributes are similar to file attributes but are
attached to (time-)steps. They can be used to describe
specific properties of a specific step. The H5hut API provides
functions to attach (write), read and inquire step attributes.
\defgroup h5_attach Attaching files
Sometimes it is required (or at least useful) to attach
additional information to H5hut files. H5hut provides
functions to attach other files to H5hut files. The attached
files can be of any type.
\defgroup h5_log Controlling verbosity level
Controlling the verbosity level of H5hut. By default only
error messages are printed. For debugging it might be helpful
to increase the verbosity level.
\defgroup h5_debug Controlling debug output
Debug output mainly intended for developers.
\defgroup h5_error Error handling interface
H5hut comes with two error handler. The default error handler
prints an error message (which can be suppressed by setting
the verbosity level to \c 0), sets an internal error number
and returns to the calling program with the value \c
H5_FAILURE. It is up to the programmer to handle the error
properly. In certain use-cases it make sense just to abort the
program, so no additional error handling is needed. H5hut
provides an abort error-handler for this use-cases-
@}
\defgroup h5part_c_api H5Part
@{
\defgroup h5part_model Setting up the data model
The H5Part data model interface provides functions to set and
inquire (per core) views on datasets.
\defgroup h5part_io Dataset interface
The dataset interface provides functions to read and write
datasets. The following data types are supported:
- 64-bit floating point numbers (\c h5_float64_t)
- 32-bit floating point numbers (\c h5_float32_t)
- 64-bit integers (\c h5_int64_t)
- 32-bit integers (\c h5_int32_t)
\note Before you can write or read a dataset, you have to
define a "view" on the dataset for each core.
@}
\defgroup h5block_c_api H5Block
@{
\defgroup h5block_model Setting up the data model
The H5Block data model interface provides functions to set and
inquire (per core) views on fields.
\defgroup h5block_io Interface to block structured data
H5Block provides functions to store and retrieve
- 3-dimensional fields with scalar values
- 3-dimensional fields with 3-dimensional vectors as values
The following datatypes are supported:
- 64-bit floating point numbers (\c h5_float64_t)
- 32-bit floating point numbers (\c h5_float32_t)
- 64-bit integers (\c h5_int64_t)
- 32-bit integers (\c h5_int32_t)
\defgroup h5block_attrib Attaching attributes to field data
Field attributes are small datasets that can be used to
describe specific properties of a field like origin, spacing
or coordinates. The H5hut API provides functions to attach
(write), read and inquire file attributes.
@}
@}
*/
/*!
\defgroup f90_api Fortran90 API
@{
\defgroup h5_f90_api H5
@{
\defgroup h5_file_f file interface
\defgroup h5_model_f setting up the data model
\defgroup h5_file_attribs_f reading and writing file attributes
\defgroup h5_step_attribs_f reading and writing step attributes
\defgroup h5_log_f control verbosity level
\defgroup h5_debug_f control debug output
\defgroup h5_error_f error handling interface
@}
\defgroup h5part_f90_api H5Part
@{
\defgroup h5part_model_f setting up the data model
\defgroup h5part_io_f reading and writing datasets
@}
\defgroup h5block_f90_api H5Block
@{
\defgroup h5block_model_f setting up the data model
\defgroup h5block_io_f reading and writing datasets
\defgroup h5block_attrib_f reading and writing attributes
@}
@}
*/
doc/Makefile.am
+1 -13
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@@ -1,14 +1,2 @@
EXTRA_DIST = \ EXTRA_DIST = \
Doxyfile \ Doxyfile doxyfooter
H5.dox
all:
doc:
doxydoc:
doxygen
clean-local:
$(RM) -r ReferencePages TWiki
$(RM) *~
doc/TracFooter.html
-2
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@@ -1,2 +0,0 @@
doc/TracHeader.html
-4
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@@ -1,4 +0,0 @@
<style type="text/css">
h1 { text-align: center; }
</style>
doc/doxyheader
-6
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@@ -1,6 +0,0 @@
<HTML>
<HEAD>
<TITLE>H5/H5Part/H5Block/H5Fed API</TITLE>
<LINK HREF="doxygen.css" REL="stylesheet" TYPE="text/css">
</HEAD>
<BODY BGCOLOR="#FFFFFF">
doc/html2twiki
-36
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@@ -1,36 +0,0 @@
#!/bin/bash
shopt -s nullglob
function html2twiki() {
declare -rx infile=$1
declare -rx outdir=$2
declare -rx fname=$( sed -n 's/.* member="\([a-zA-Z0-9_.]*\)::\([_a-zA-Z0-9]*\)" .*/\2/p' "${infile}" )
declare -rx outfile="${outdir}/${fname}.txt"
grep -q " member=" "${infile}" || return 0
sed '/Generated by/,/anchor/d' "${infile}" > "${outfile}"
}
mkdir -p TWiki/h5_core
mkdir -p TWiki/H5
mkdir -p TWiki/H5Part
mkdir -p TWiki/H5Block
mkdir -p TWiki/H5Fed
for f in ReferencePages/group__h5__core_*.html; do
html2twiki $f TWiki/h5_core
done
for f in ReferencePages/group__h5__c__api_*.html; do
html2twiki $f TWiki/H5
done
for f in ReferencePages/group__h5part__c__api_*.html; do
html2twiki $f TWiki/H5Part
done
for f in ReferencePages/group__h5block__c__api_*.html; do
html2twiki $f TWiki/H5Block
done
for f in ReferencePages/group__h5fed__c__api_*.html; do
html2twiki $f TWiki/H5Fed
done
doc/meshexample.dxf
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doc/postprocess.py
-39
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#!/usr/bin/env python
from lxml import etree
from lxml.html import builder as E
import os
import re
tree = etree.parse('tagfile')
tags = tree.xpath ('//member[@kind="function"]')
tags_per_files = {}
for tag in tags:
name = tag.find("name").text
anchor = tag.find("anchor").text
anchorfile = tag.find("anchorfile").text
if anchorfile in tags_per_files:
tags_per_files[anchorfile].append([name, anchor])
else:
tags_per_files[anchorfile] = [[name, anchor]]
prefix = None
for line in open("Doxyfile", "r"):
if re.search ("^OUTPUT_DIRECTORY", line):
prefix = line.split("=")[-1].strip()
if not prefix:
prefix = "."
parser = etree.HTMLParser()
for filename,anchors in tags_per_files.items():
print "Processing file: %s/%s" % (prefix, filename)
tree = etree.parse ("%s/%s" % (prefix, filename), parser)
for name,id in anchors:
anchor = tree.xpath ('//a[@id="%s"]' % id)
el = E.A(id="%s" % name)
anchor[0].addnext (el)
f = open ("%s/%s" % (prefix, filename), "w")
f.write (etree.tostring (tree))
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doc/tetrahedron_refinements/1-edge/edge_01_refined/01.txt
-10
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TET no. 0:
0.5, 0.5, 0.0
0.0, 0.0, 1.0
0.0, 0.0, 0.0
0.0, 1.0, 0.0
TET no. 1:
0.5, 0.5, 0.0
0.0, 0.0, 0.0
0.0, 0.0, 1.0
1.0, 0.0, 0.0
doc/tetrahedron_refinements/1-edge/edge_01_refined/01.vtk
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# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 5 DOUBLE
0.5 0.5 0.0
0.0 0.0 1.0
0.0 0.0 0.0
0.0 1.0 0.0
1.0 0.0 0.0
CELLS 2 10
4 0 1 2 3
4 0 2 1 4
CELL_TYPES 2
10
10
CELL_DATA 2
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
doc/tetrahedron_refinements/1-edge/edge_01_refined/01_smal.png
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doc/tetrahedron_refinements/1-edge/edge_12_refined/12.txt
-10
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TET no. 0:
0.0, 0.5, 0.5
0.0, 0.0, 0.0
1.0, 0.0, 0.0
0.0, 1.0, 0.0
TET no. 1:
0.0, 0.5, 0.5
1.0, 0.0, 0.0
0.0, 0.0, 0.0
0.0, 0.0, 1.0
doc/tetrahedron_refinements/1-edge/edge_12_refined/12.vtk
-25
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# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 5 DOUBLE
0.0 0.5 0.5
0.0 0.0 0.0
1.0 0.0 0.0
0.0 1.0 0.0
0.0 0.0 1.0
CELLS 2 10
4 0 1 2 3
4 0 2 1 4
CELL_TYPES 2
10
10
CELL_DATA 2
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
doc/tetrahedron_refinements/1-edge/edge_12_refined/12_small.png
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doc/tetrahedron_refinements/1-edge/edge_20_refined/20.txt
-10
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TET no. 0:
0.5, 0.0, 0.5
0.0, 0.0, 0.0
0.0, 1.0, 0.0
0.0, 0.0, 1.0
TET no. 1:
0.5, 0.0, 0.5
0.0, 1.0, 0.0
0.0, 0.0, 0.0
1.0, 0.0, 0.0
doc/tetrahedron_refinements/1-edge/edge_20_refined/20.vtk
-25
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# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 5 DOUBLE
0.5 0.0 0.5
0.0 0.0 0.0
0.0 1.0 0.0
0.0 0.0 1.0
1.0 0.0 0.0
CELLS 2 10
4 0 1 2 3
4 0 2 1 4
CELL_TYPES 2
10
10
CELL_DATA 2
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
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doc/tetrahedron_refinements/1-edge/edge_23_refined/23.txt
-10
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TET no. 0:
0.0, 0.0, 0.5
1.0, 0.0, 0.0
0.0, 1.0, 0.0
0.0, 0.0, 0.0
TET no. 1:
0.0, 0.0, 0.5
0.0, 1.0, 0.0
1.0, 0.0, 0.0
0.0, 0.0, 1.0
doc/tetrahedron_refinements/1-edge/edge_23_refined/23.vtk
-25
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# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 5 DOUBLE
0.0 0.0 0.5
1.0 0.0 0.0
0.0 1.0 0.0
0.0 0.0 0.0
0.0 0.0 1.0
CELLS 2 10
4 0 1 2 3
4 0 2 1 4
CELL_TYPES 2
10
10
CELL_DATA 2
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
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doc/tetrahedron_refinements/1-edge/edge_30_refined/30.pvsm
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doc/tetrahedron_refinements/1-edge/edge_30_refined/30.txt
-10
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TET no. 0:
0.5, 0.0, 0.0
0.0, 1.0, 0.0
0.0, 0.0, 1.0
0.0, 0.0, 0.0
TET no. 1:
0.5, 0.0, 0.0
0.0, 0.0, 1.0
0.0, 1.0, 0.0
1.0, 0.0, 0.0
doc/tetrahedron_refinements/1-edge/edge_30_refined/30.vtk
-25
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# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 5 DOUBLE
0.5 0.0 0.0
0.0 1.0 0.0
0.0 0.0 1.0
0.0 0.0 0.0
1.0 0.0 0.0
CELLS 2 10
4 0 1 2 3
4 0 2 1 4
CELL_TYPES 2
10
10
CELL_DATA 2
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
doc/tetrahedron_refinements/1-edge/edge_30_refined/30_small.png
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doc/tetrahedron_refinements/1-edge/edge_31_refined/31.png
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doc/tetrahedron_refinements/1-edge/edge_31_refined/31.pvsm
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doc/tetrahedron_refinements/1-edge/edge_31_refined/31.txt
-10
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TET no. 0:
0.0, 0.5, 0.0
0.0, 0.0, 1.0
1.0, 0.0, 0.0
0.0, 0.0, 0.0
TET no. 1:
0.0, 0.5, 0.0
1.0, 0.0, 0.0
0.0, 0.0, 1.0
0.0, 1.0, 0.0
doc/tetrahedron_refinements/1-edge/edge_31_refined/31.vtk
-25
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# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 5 DOUBLE
0.0 0.5 0.0
0.0 0.0 1.0
1.0 0.0 0.0
0.0 0.0 0.0
0.0 1.0 0.0
CELLS 2 10
4 0 1 2 3
4 0 2 1 4
CELL_TYPES 2
10
10
CELL_DATA 2
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
doc/tetrahedron_refinements/1-edge/edge_31_refined/31_small.png
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doc/tetrahedron_refinements/2-edges/edge_01-12_refined/01-12.png
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doc/tetrahedron_refinements/2-edges/edge_01-12_refined/01-12.txt
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TET no. 0:
0.5, 0.5, 0.0
0.0, 1.0, 0.0
0.0, 0.5, 0.5
0.0, 0.0, 0.0
TET no. 1:
0.0, 0.5, 0.5
1.0, 0.0, 0.0
0.5, 0.5, 0.0
0.0, 0.0, 0.0
TET no. 2:
1.0, 0.0, 0.0
0.0, 0.5, 0.5
0.0, 0.0, 1.0
0.0, 0.0, 0.0
doc/tetrahedron_refinements/2-edges/edge_01-12_refined/01-12.vtk
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# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 6 DOUBLE
0.5 0.5 0.0
0.0 1.0 0.0
0.0 0.5 0.5
0.0 0.0 0.0
1.0 0.0 0.0
0.0 0.0 1.0
CELLS 3 15
4 0 1 2 3
4 2 4 0 3
4 4 2 5 3
CELL_TYPES 3
10
10
10
CELL_DATA 3
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
2
doc/tetrahedron_refinements/2-edges/edge_01-12_refined/01-12_smal.png
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doc/tetrahedron_refinements/2-edges/edge_01-20_refined/01-20.png
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doc/tetrahedron_refinements/2-edges/edge_01-20_refined/01-20.txt
-15
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TET no. 0:
0.5, 0.0, 0.5
1.0, 0.0, 0.0
0.5, 0.5, 0.0
0.0, 0.0, 0.0
TET no. 1:
0.5, 0.5, 0.0
0.0, 0.0, 1.0
0.5, 0.0, 0.5
0.0, 0.0, 0.0
TET no. 2:
0.0, 0.0, 1.0
0.5, 0.5, 0.0
0.0, 1.0, 0.0
0.0, 0.0, 0.0
doc/tetrahedron_refinements/2-edges/edge_01-20_refined/01-20.vtk
-29
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# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 6 DOUBLE
0.5 0.0 0.5
1.0 0.0 0.0
0.5 0.5 0.0
0.0 0.0 0.0
0.0 0.0 1.0
0.0 1.0 0.0
CELLS 3 15
4 0 1 2 3
4 2 4 0 3
4 4 2 5 3
CELL_TYPES 3
10
10
10
CELL_DATA 3
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
2
doc/tetrahedron_refinements/2-edges/edge_01-20_refined/01-20_small.png
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doc/tetrahedron_refinements/2-edges/edge_01-23_refined/01-23.png
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doc/tetrahedron_refinements/2-edges/edge_01-23_refined/01-23.txt
-20
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@@ -1,20 +0,0 @@
TET no. 0:
1.0, 0.0, 0.0
0.5, 0.5, 0.0
0.0, 0.0, 0.5
0.0, 0.0, 0.0
TET no. 1:
0.5, 0.5, 0.0
0.0, 1.0, 0.0
0.0, 0.0, 0.5
0.0, 0.0, 0.0
TET no. 2:
0.5, 0.5, 0.0
0.0, 0.0, 0.5
0.0, 1.0, 0.0
0.0, 0.0, 1.0
TET no. 3:
1.0, 0.0, 0.0
0.0, 0.0, 0.5
0.5, 0.5, 0.0
0.0, 0.0, 1.0
doc/tetrahedron_refinements/2-edges/edge_01-23_refined/01-23.vtk
-32
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# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 6 DOUBLE
1.0 0.0 0.0
0.5 0.5 0.0
0.0 0.0 0.5
0.0 0.0 0.0
0.0 1.0 0.0
0.0 0.0 1.0
CELLS 4 20
4 0 1 2 3
4 1 4 2 3
4 1 2 4 5
4 0 2 1 5
CELL_TYPES 4
10
10
10
10
CELL_DATA 4
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
2
3
doc/tetrahedron_refinements/2-edges/edge_01-23_refined/01-23_smal.png
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doc/tetrahedron_refinements/2-edges/edge_01-30_refined/01-30.png
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doc/tetrahedron_refinements/2-edges/edge_01-30_refined/01-30.pvsm
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doc/tetrahedron_refinements/2-edges/edge_01-30_refined/01-30.txt
-15
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TET no. 0:
0.5, 0.5, 0.0
1.0, 0.0, 0.0
0.5, 0.0, 0.0
0.0, 0.0, 1.0
TET no. 1:
0.5, 0.0, 0.0
0.0, 1.0, 0.0
0.5, 0.5, 0.0
0.0, 0.0, 1.0
TET no. 2:
0.0, 1.0, 0.0
0.5, 0.0, 0.0
0.0, 0.0, 0.0
0.0, 0.0, 1.0
doc/tetrahedron_refinements/2-edges/edge_01-30_refined/01-30.vtk
-29
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@@ -1,29 +0,0 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 6 DOUBLE
0.5 0.5 0.0
1.0 0.0 0.0
0.5 0.0 0.0
0.0 0.0 1.0
0.0 1.0 0.0
0.0 0.0 0.0
CELLS 3 15
4 0 1 2 3
4 2 4 0 3
4 4 2 5 3
CELL_TYPES 3
10
10
10
CELL_DATA 3
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
2
doc/tetrahedron_refinements/2-edges/edge_01-30_refined/01-30_small.png
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