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-95
@@ -1,95 +0,0 @@
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*.tar.gz
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*.[oa]
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*.la
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*.lo
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*.so
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*~
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autom4te.cache/
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|
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|
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ReferencePages
|
||||
vtk2h5grid
|
||||
@@ -7,4 +7,4 @@ Wes Bethel (NERSC/LBNL)
|
||||
John Shalf (NERSC/LBNL)
|
||||
Cristina Siegerist (NERSC/LBNL)
|
||||
|
||||
Please use h5part@lists.psi.ch for communication.
|
||||
Please use h5part@lists.psi.ch for communicaion.
|
||||
|
||||
@@ -1,71 +0,0 @@
|
||||
*** Copyright Notice ***
|
||||
|
||||
H5hut Copyright (c) 2006-2016, The Regents of the University of California,
|
||||
through Lawrence Berkeley National Laboratory (subject to receipt of any
|
||||
required approvals from the U.S. Dept. of Energy) and the Paul Scherrer
|
||||
Institut (Switzerland). All rights reserved.
|
||||
|
||||
If you have questions about your rights to use or distribute this
|
||||
software, please contact Berkeley Lab's Technology Transfer Department
|
||||
at TTD@lbl.gov referring to "H5Part (LBNL Ref CR-2255)"
|
||||
|
||||
NOTICE. This software was developed under partial funding from the U.S.
|
||||
Department of Energy. As such, the U.S. Government has been granted for
|
||||
itself and others acting on its behalf a paid-up, nonexclusive,
|
||||
irrevocable, worldwide license in the Software to reproduce, prepare
|
||||
derivative works, and perform publicly and display publicly. Beginning
|
||||
five (5) years after the date permission to assert copyright is obtained
|
||||
from the U.S. Department of Energy, and subject to any subsequent five
|
||||
(5) year renewals, the U.S. Government is granted for itself and others
|
||||
acting on its behalf a paid-up, nonexclusive, irrevocable, worldwide
|
||||
license in the Software to reproduce, prepare derivative works,
|
||||
distribute copies to the public, perform publicly and display publicly,
|
||||
and to permit others to do so.
|
||||
|
||||
|
||||
*** License agreement ***
|
||||
|
||||
H5hut Copyright (c) 2006-2016, The Regents of the University of California,
|
||||
through Lawrence Berkeley National Laboratory (subject to receipt of any
|
||||
required approvals from the U.S. Dept. of Energy) and the Paul Scherrer
|
||||
Institut (Switzerland). All rights reserved.
|
||||
|
||||
Redistribution and use in source and binary forms, with or without
|
||||
modification, are permitted provided that the following conditions are met:
|
||||
|
||||
(1) Redistributions of source code must retain the above copyright
|
||||
notice, this list of conditions and the following disclaimer.
|
||||
|
||||
(2) Redistributions in binary form must reproduce the above copyright
|
||||
notice, this list of conditions and the following disclaimer in the
|
||||
documentation and/or other materials provided with the distribution.
|
||||
|
||||
(3) Neither the name of the University of California, Lawrence Berkeley
|
||||
National Laboratory, U.S. Dept. of Energy, Paul Scherrer Institut
|
||||
(Switzerland) nor the names of its contributors may be used to endorse
|
||||
or promote products derived from this software without specific prior
|
||||
written permission.
|
||||
|
||||
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS
|
||||
IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED
|
||||
TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A
|
||||
PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER
|
||||
OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
|
||||
EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
|
||||
PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
|
||||
PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
|
||||
LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
|
||||
NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
|
||||
SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
|
||||
|
||||
You are under no obligation whatsoever to provide any bug fixes,
|
||||
patches, or upgrades to the features, functionality or performance of
|
||||
the source code ("Enhancements") to anyone; however, if you choose to
|
||||
make your Enhancements available either publicly, or directly to
|
||||
Lawrence Berkeley National Laboratory, without imposing a separate
|
||||
written license agreement for such Enhancements, then you hereby grant
|
||||
the following license: a non-exclusive, royalty-free perpetual license
|
||||
to install, use, modify, prepare derivative works, incorporate into
|
||||
other computer software, distribute, and sublicense such enhancements or
|
||||
derivative works thereof, in binary and source code form.
|
||||
|
||||
@@ -0,0 +1,7 @@
|
||||
*** Copyright Notice ***
|
||||
|
||||
H5Part Copyright (c) 2006, The Regents of the University of California, through Lawrence Berkeley National Laboratory (subject to receipt of any required approvals from the U.S. Dept. of Energy) and the Paul Scherrer Institut (Switzerland). All rights reserved.
|
||||
|
||||
If you have questions about your rights to use or distribute this software, please contact Berkeley Lab's Technology Transfer Department at TTD@lbl.gov referring to "H5Part (LBNL Ref CR-2255)"
|
||||
|
||||
NOTICE. This software was developed under partial funding from the U.S. Department of Energy. As such, the U.S. Government has been granted for itself and others acting on its behalf a paid-up, nonexclusive, irrevocable, worldwide license in the Software to reproduce, prepare derivative works, and perform publicly and display publicly. Beginning five (5) years after the date permission to assert copyright is obtained from the U.S. Department of Energy, and subject to any subsequent five (5) year renewals, the U.S. Government is granted for itself and others acting on its behalf a paid-up, nonexclusive, irrevocable, worldwide license in the Software to reproduce, prepare derivative works, distribute copies to the public, perform publicly and display publicly, and to permit others to do so.
|
||||
@@ -1,15 +0,0 @@
|
||||
2018-09-14 Gsell Achim <achi.gsell@psi.ch>
|
||||
|
||||
* C-API
|
||||
- H5PartSetNumPoints() renamed to H5PartSetNumItems()
|
||||
- H5PartGetNumPoints() renamed to H5PartGetNumItems()
|
||||
- Dataset names longer then 64 bytes are handled as error.
|
||||
- Same for step/iteration names.
|
||||
* core API
|
||||
- we use the term 'iteration' instead of 'step'
|
||||
- we use the term 'item' instead of 'point'
|
||||
- re-factor function and variable names
|
||||
- in printing messages/debug output fixed
|
||||
- do not flush (sync to disk) after writing a dataset by default,
|
||||
can be controlled by a property
|
||||
|
||||
|
||||
Executable
+133
@@ -0,0 +1,133 @@
|
||||
UNAME := $(shell uname | perl -pe 's/(sn\d\d\d\d|jsimpson)/UNICOS\/mk/')
|
||||
# for host specific options
|
||||
HOST := $(shell hostname)
|
||||
|
||||
# for processor-specific options
|
||||
ifeq ($(UNAME), Linux)
|
||||
PROC := $(shell uname -p)
|
||||
endif
|
||||
|
||||
CXX = c++
|
||||
CC = cc
|
||||
H5HOME = /usr/local/hdf5
|
||||
CFLAGS = -g -I$(H5HOME)/include
|
||||
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
|
||||
|
||||
# MacOS-X Serial
|
||||
ifeq ($(UNAME), Darwin)
|
||||
ifeq ($(PARALLEL), yes)
|
||||
CXX = g++
|
||||
CC = mpicc
|
||||
H5HOME = /usr/local
|
||||
CFLAGS = -O -g -I$(H5HOME)/include -DPARALLEL_IO
|
||||
LDFLAGS = -L$(H5HOME)/lib -lmpich -lpmpich -lhdf5 -lz -lm
|
||||
else
|
||||
CXX = c++
|
||||
CC = cc
|
||||
F90 = xlf
|
||||
H5HOME = /usr/local
|
||||
CFLAGS = -O -g -I$(H5HOME)/include
|
||||
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
|
||||
endif
|
||||
endif
|
||||
|
||||
# SGI MIPS/Irix
|
||||
ifeq ($(UNAME), IRIX64)
|
||||
CXX = CC
|
||||
CC = cc
|
||||
F90 = f90
|
||||
ifeq ($(PARALLEL), yes)
|
||||
H5HOME = $(HDF5_DIR)
|
||||
CFLAGS = -64 -O3 -I$(H5HOME)/include -DPARALLEL_IO
|
||||
LDFLAGS = -64 -O3 -L$(H5HOME)/lib -lhdf5 -lz -lmpi -lm
|
||||
else
|
||||
H5HOME = /usr/local
|
||||
CFLAGS = -O3 -I$(H5HOME)/include
|
||||
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
|
||||
endif
|
||||
endif
|
||||
|
||||
# AIX/SP-2 Parallel/serial : Seaborg
|
||||
ifeq ($(UNAME), AIX)
|
||||
ifeq ($(PARALLEL), yes) # parallel
|
||||
CXX = mpCC_r
|
||||
CC = mpxlc_r
|
||||
# H5HOME = /usr/common/usg/hdf5_64/1.4.5-post2/parallel
|
||||
H5HOME = /usr/common/usg/hdf5_64/1.6.1/parallel
|
||||
# /usr/common/usg/hdf5/1.4.4/parallel
|
||||
H4HOME = /usr/common/usg/hdf/default
|
||||
OPT = -qarch=auto -qtune=auto-qcache=auto -O3 -qhot
|
||||
CFLAGS = -q64 -I$(H5HOME)/include
|
||||
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -L$(H4HOME)/lib -lz -lsz -lm
|
||||
else # serial
|
||||
CXX = xlC
|
||||
CC = xlc
|
||||
H5HOME = /usr/common/usg/hdf5/1.4.4/serial
|
||||
H4HOME = /usr/common/usg/hdf/default
|
||||
OPT = -qarch=auto -qtune=auto-qcache=auto -O3 -qhot
|
||||
CFLAGS = -g -bmaxdata:800000000 -bmaxstack:256000000 -I$(H5HOME)/include
|
||||
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -L$(H4HOME)/lib -lz -lm
|
||||
endif
|
||||
endif
|
||||
|
||||
# Linux
|
||||
ifeq ($(UNAME), Linux)
|
||||
# if this machine is NERSC/Davinci Altix system
|
||||
ifeq ($(PROC), ia64)
|
||||
CC = icc
|
||||
CXX = icc
|
||||
|
||||
ifeq ($(PARALLEL), yes)
|
||||
# IA64 Linux Parallel
|
||||
ifeq ($(HOST), davinci)
|
||||
H5HOME = $(HDF5_PAR)
|
||||
MPILIB = -lmpi
|
||||
else
|
||||
H5HOME = /usr/local
|
||||
HDF5_PAR_LIB = -L$(H5HOME)/lib -lhdf5 -lz -lm
|
||||
HDF5_PAR_INCLUDE = -I$(H5HOME)/include
|
||||
MPIHOME = /usr/local
|
||||
MPILIB = -lmpich
|
||||
endif # HOST
|
||||
CFLAGS = -O3 -DPARALLEL_IO -DH5_HAVE_PARALLEL $(HDF5_PAR_INCLUDE)
|
||||
LDFLAGS = $(HDF5_PAR_LIB) $(MPILIB)
|
||||
else # IA64 Linux Serial
|
||||
CFLAGS = -O3 $(HDF5_INCLUDE)
|
||||
LDFLAGS = $(HDF5_LIB) -lm
|
||||
endif # PARALLEL
|
||||
|
||||
# else this is standard IA32 linux
|
||||
else
|
||||
ifeq ($(PARALLEL), yes)
|
||||
# Linux Parallel
|
||||
CC = gcc
|
||||
CXX = g++
|
||||
H5HOME = /usr/local
|
||||
MPIHOME = /usr/local
|
||||
CFLAGS = -O -g -DPARALLEL_IO -DH5_HAVE_PARALLEL -I$(H5HOME)/include
|
||||
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lmpich -lrt -lz -lm
|
||||
else # Linux Serial
|
||||
CXX = g++
|
||||
CC = gcc
|
||||
CFLAGS = -O -g -I$(H5HOME)/include
|
||||
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
|
||||
endif # !PARALLEL
|
||||
endif # PROC!ia64
|
||||
|
||||
endif # !Linux
|
||||
|
||||
ifeq ($(PARALLEL), yes) #parallel
|
||||
ifdef F90
|
||||
all: H5PartTest H5PartTest.o H5Part.o H5PartTestParallel H5PartAndreasTest H5PartF.o
|
||||
else
|
||||
all: H5PartTest H5PartTest.o H5Part.o H5PartTestParallel H5PartAndreasTest
|
||||
endif
|
||||
else
|
||||
ifdef F90
|
||||
all: H5PartTest H5PartTest.o H5Part.o H5PartF.o
|
||||
else
|
||||
all: H5PartTest H5PartTest.o H5Part.o
|
||||
endif
|
||||
endif
|
||||
|
||||
include rules.make
|
||||
+15
-18
@@ -1,21 +1,18 @@
|
||||
ACLOCAL_AMFLAGS = -I m4
|
||||
EXTRA_DIST = \
|
||||
autogen.sh \
|
||||
ax_pkg_swig.m4
|
||||
# Trial by Antino Kim
|
||||
# Top level Makefile.am
|
||||
|
||||
SUBDIRS = \
|
||||
src \
|
||||
test \
|
||||
tools \
|
||||
doc \
|
||||
examples/H5 \
|
||||
examples/H5Part \
|
||||
examples/H5Block \
|
||||
examples/H5Fed
|
||||
SUBDIRS = \
|
||||
src \
|
||||
test \
|
||||
tools
|
||||
|
||||
MAINTAINERCLEANFILES = \
|
||||
config.h \
|
||||
config.log \
|
||||
config.status \
|
||||
stamp-h.in \
|
||||
MAINTAINTERCLEANFILES = \
|
||||
Makefile.in \
|
||||
aclocal.m4 \
|
||||
config.h \
|
||||
config.h.in \
|
||||
config.log \
|
||||
config.status \
|
||||
configure \
|
||||
stamp-h.in \
|
||||
stamp-h1
|
||||
|
||||
+632
@@ -0,0 +1,632 @@
|
||||
# Makefile.in generated by automake 1.9.5 from Makefile.am.
|
||||
# @configure_input@
|
||||
|
||||
# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
|
||||
# 2003, 2004, 2005 Free Software Foundation, Inc.
|
||||
# This Makefile.in is free software; the Free Software Foundation
|
||||
# gives unlimited permission to copy and/or distribute it,
|
||||
# with or without modifications, as long as this notice is preserved.
|
||||
|
||||
# This program is distributed in the hope that it will be useful,
|
||||
# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
|
||||
# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
|
||||
# PARTICULAR PURPOSE.
|
||||
|
||||
@SET_MAKE@
|
||||
|
||||
# Trial by Antino Kim
|
||||
# Top level Makefile.am
|
||||
srcdir = @srcdir@
|
||||
top_srcdir = @top_srcdir@
|
||||
VPATH = @srcdir@
|
||||
pkgdatadir = $(datadir)/@PACKAGE@
|
||||
pkglibdir = $(libdir)/@PACKAGE@
|
||||
pkgincludedir = $(includedir)/@PACKAGE@
|
||||
top_builddir = .
|
||||
am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
|
||||
INSTALL = @INSTALL@
|
||||
install_sh_DATA = $(install_sh) -c -m 644
|
||||
install_sh_PROGRAM = $(install_sh) -c
|
||||
install_sh_SCRIPT = $(install_sh) -c
|
||||
INSTALL_HEADER = $(INSTALL_DATA)
|
||||
transform = $(program_transform_name)
|
||||
NORMAL_INSTALL = :
|
||||
PRE_INSTALL = :
|
||||
POST_INSTALL = :
|
||||
NORMAL_UNINSTALL = :
|
||||
PRE_UNINSTALL = :
|
||||
POST_UNINSTALL = :
|
||||
build_triplet = @build@
|
||||
host_triplet = @host@
|
||||
DIST_COMMON = README $(am__configure_deps) $(srcdir)/Makefile.am \
|
||||
$(srcdir)/Makefile.in $(srcdir)/config.h.in \
|
||||
$(top_srcdir)/configure AUTHORS ChangeLog NEWS config.guess \
|
||||
config.sub depcomp install-sh missing
|
||||
subdir = .
|
||||
ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
|
||||
am__aclocal_m4_deps = $(top_srcdir)/configure.ac
|
||||
am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
|
||||
$(ACLOCAL_M4)
|
||||
am__CONFIG_DISTCLEAN_FILES = config.status config.cache config.log \
|
||||
configure.lineno configure.status.lineno
|
||||
mkinstalldirs = $(install_sh) -d
|
||||
CONFIG_HEADER = config.h
|
||||
CONFIG_CLEAN_FILES =
|
||||
SOURCES =
|
||||
DIST_SOURCES =
|
||||
RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \
|
||||
html-recursive info-recursive install-data-recursive \
|
||||
install-exec-recursive install-info-recursive \
|
||||
install-recursive installcheck-recursive installdirs-recursive \
|
||||
pdf-recursive ps-recursive uninstall-info-recursive \
|
||||
uninstall-recursive
|
||||
ETAGS = etags
|
||||
CTAGS = ctags
|
||||
DIST_SUBDIRS = $(SUBDIRS)
|
||||
DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
|
||||
distdir = $(PACKAGE)-$(VERSION)
|
||||
top_distdir = $(distdir)
|
||||
am__remove_distdir = \
|
||||
{ test ! -d $(distdir) \
|
||||
|| { find $(distdir) -type d ! -perm -200 -exec chmod u+w {} ';' \
|
||||
&& rm -fr $(distdir); }; }
|
||||
DIST_ARCHIVES = $(distdir).tar.gz
|
||||
GZIP_ENV = --best
|
||||
distuninstallcheck_listfiles = find . -type f -print
|
||||
distcleancheck_listfiles = find . -type f -print
|
||||
ACLOCAL = @ACLOCAL@
|
||||
ADDFLAGS = @ADDFLAGS@
|
||||
AMDEP_FALSE = @AMDEP_FALSE@
|
||||
AMDEP_TRUE = @AMDEP_TRUE@
|
||||
AMTAR = @AMTAR@
|
||||
AUTOCONF = @AUTOCONF@
|
||||
AUTOHEADER = @AUTOHEADER@
|
||||
AUTOMAKE = @AUTOMAKE@
|
||||
AWK = @AWK@
|
||||
BAS_CC = @BAS_CC@
|
||||
BUILD_TOOLS = @BUILD_TOOLS@
|
||||
CC = @CC@
|
||||
CCDEPMODE = @CCDEPMODE@
|
||||
CFLAGS = @CFLAGS@
|
||||
CPP = @CPP@
|
||||
CPPFLAGS = @CPPFLAGS@
|
||||
CXX = @CXX@
|
||||
CXXDEPMODE = @CXXDEPMODE@
|
||||
CXXFLAGS = @CXXFLAGS@
|
||||
CYGPATH_W = @CYGPATH_W@
|
||||
DEFS = @DEFS@
|
||||
DEPDIR = @DEPDIR@
|
||||
ECHO_C = @ECHO_C@
|
||||
ECHO_N = @ECHO_N@
|
||||
ECHO_T = @ECHO_T@
|
||||
EGREP = @EGREP@
|
||||
EXEEXT = @EXEEXT@
|
||||
FC = @FC@
|
||||
FCFLAGS = @FCFLAGS@
|
||||
FFLAGS = @FFLAGS@
|
||||
H5P_LIB_LOC = @H5P_LIB_LOC@
|
||||
HDF5ROOT = @HDF5ROOT@
|
||||
INSTALL_DATA = @INSTALL_DATA@
|
||||
INSTALL_PROGRAM = @INSTALL_PROGRAM@
|
||||
INSTALL_SCRIPT = @INSTALL_SCRIPT@
|
||||
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
|
||||
LDFLAGS = @LDFLAGS@
|
||||
LIBOBJS = @LIBOBJS@
|
||||
LIBS = @LIBS@
|
||||
LTLIBOBJS = @LTLIBOBJS@
|
||||
MAKEINFO = @MAKEINFO@
|
||||
MPICC = @MPICC@
|
||||
MPICXX = @MPICXX@
|
||||
MPIFC = @MPIFC@
|
||||
MPIINC = @MPIINC@
|
||||
MPILIB = @MPILIB@
|
||||
MPIROOT = @MPIROOT@
|
||||
MTARGET = @MTARGET@
|
||||
OBJEXT = @OBJEXT@
|
||||
PACKAGE = @PACKAGE@
|
||||
PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@
|
||||
PACKAGE_NAME = @PACKAGE_NAME@
|
||||
PACKAGE_STRING = @PACKAGE_STRING@
|
||||
PACKAGE_TARNAME = @PACKAGE_TARNAME@
|
||||
PACKAGE_VERSION = @PACKAGE_VERSION@
|
||||
PATH_SEPARATOR = @PATH_SEPARATOR@
|
||||
PHDF5ROOT = @PHDF5ROOT@
|
||||
PYTHON_PATH = @PYTHON_PATH@
|
||||
PY_WRAPPER = @PY_WRAPPER@
|
||||
RANLIB = @RANLIB@
|
||||
SET_MAKE = @SET_MAKE@
|
||||
SHELL = @SHELL@
|
||||
STDCXX = @STDCXX@
|
||||
STRIP = @STRIP@
|
||||
SZLIB = @SZLIB@
|
||||
TOOLS_CXX = @TOOLS_CXX@
|
||||
TOOLS_H5PART_LIB = @TOOLS_H5PART_LIB@
|
||||
TOOLS_HDFLIB = @TOOLS_HDFLIB@
|
||||
TTARGET = @TTARGET@
|
||||
UNDERSCORE_H = @UNDERSCORE_H@
|
||||
VERSION = @VERSION@
|
||||
ac_ct_CC = @ac_ct_CC@
|
||||
ac_ct_CXX = @ac_ct_CXX@
|
||||
ac_ct_FC = @ac_ct_FC@
|
||||
ac_ct_RANLIB = @ac_ct_RANLIB@
|
||||
ac_ct_STRIP = @ac_ct_STRIP@
|
||||
am__fastdepCC_FALSE = @am__fastdepCC_FALSE@
|
||||
am__fastdepCC_TRUE = @am__fastdepCC_TRUE@
|
||||
am__fastdepCXX_FALSE = @am__fastdepCXX_FALSE@
|
||||
am__fastdepCXX_TRUE = @am__fastdepCXX_TRUE@
|
||||
am__include = @am__include@
|
||||
am__leading_dot = @am__leading_dot@
|
||||
am__quote = @am__quote@
|
||||
am__tar = @am__tar@
|
||||
am__untar = @am__untar@
|
||||
bindir = @bindir@
|
||||
build = @build@
|
||||
build_alias = @build_alias@
|
||||
build_cpu = @build_cpu@
|
||||
build_os = @build_os@
|
||||
build_vendor = @build_vendor@
|
||||
datadir = @datadir@
|
||||
exec_prefix = @exec_prefix@
|
||||
host = @host@
|
||||
host_alias = @host_alias@
|
||||
host_cpu = @host_cpu@
|
||||
host_os = @host_os@
|
||||
host_vendor = @host_vendor@
|
||||
includedir = @includedir@
|
||||
infodir = @infodir@
|
||||
install_sh = @install_sh@
|
||||
libdir = @libdir@
|
||||
libexecdir = @libexecdir@
|
||||
localstatedir = @localstatedir@
|
||||
mandir = @mandir@
|
||||
mkdir_p = @mkdir_p@
|
||||
oldincludedir = @oldincludedir@
|
||||
prefix = @prefix@
|
||||
program_transform_name = @program_transform_name@
|
||||
sbindir = @sbindir@
|
||||
sharedstatedir = @sharedstatedir@
|
||||
sysconfdir = @sysconfdir@
|
||||
target_alias = @target_alias@
|
||||
SUBDIRS = \
|
||||
src \
|
||||
test \
|
||||
tools
|
||||
|
||||
MAINTAINTERCLEANFILES = \
|
||||
Makefile.in \
|
||||
aclocal.m4 \
|
||||
config.h \
|
||||
config.h.in \
|
||||
config.log \
|
||||
config.status \
|
||||
configure \
|
||||
stamp-h.in \
|
||||
stamp-h1
|
||||
|
||||
all: config.h
|
||||
$(MAKE) $(AM_MAKEFLAGS) all-recursive
|
||||
|
||||
.SUFFIXES:
|
||||
am--refresh:
|
||||
@:
|
||||
$(srcdir)/Makefile.in: $(srcdir)/Makefile.am $(am__configure_deps)
|
||||
@for dep in $?; do \
|
||||
case '$(am__configure_deps)' in \
|
||||
*$$dep*) \
|
||||
echo ' cd $(srcdir) && $(AUTOMAKE) --foreign '; \
|
||||
cd $(srcdir) && $(AUTOMAKE) --foreign \
|
||||
&& exit 0; \
|
||||
exit 1;; \
|
||||
esac; \
|
||||
done; \
|
||||
echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign Makefile'; \
|
||||
cd $(top_srcdir) && \
|
||||
$(AUTOMAKE) --foreign Makefile
|
||||
.PRECIOUS: Makefile
|
||||
Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
|
||||
@case '$?' in \
|
||||
*config.status*) \
|
||||
echo ' $(SHELL) ./config.status'; \
|
||||
$(SHELL) ./config.status;; \
|
||||
*) \
|
||||
echo ' cd $(top_builddir) && $(SHELL) ./config.status $@ $(am__depfiles_maybe)'; \
|
||||
cd $(top_builddir) && $(SHELL) ./config.status $@ $(am__depfiles_maybe);; \
|
||||
esac;
|
||||
|
||||
$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
|
||||
$(SHELL) ./config.status --recheck
|
||||
|
||||
$(top_srcdir)/configure: $(am__configure_deps)
|
||||
cd $(srcdir) && $(AUTOCONF)
|
||||
$(ACLOCAL_M4): $(am__aclocal_m4_deps)
|
||||
cd $(srcdir) && $(ACLOCAL) $(ACLOCAL_AMFLAGS)
|
||||
|
||||
config.h: stamp-h1
|
||||
@if test ! -f $@; then \
|
||||
rm -f stamp-h1; \
|
||||
$(MAKE) stamp-h1; \
|
||||
else :; fi
|
||||
|
||||
stamp-h1: $(srcdir)/config.h.in $(top_builddir)/config.status
|
||||
@rm -f stamp-h1
|
||||
cd $(top_builddir) && $(SHELL) ./config.status config.h
|
||||
$(srcdir)/config.h.in: $(am__configure_deps)
|
||||
cd $(top_srcdir) && $(AUTOHEADER)
|
||||
rm -f stamp-h1
|
||||
touch $@
|
||||
|
||||
distclean-hdr:
|
||||
-rm -f config.h stamp-h1
|
||||
uninstall-info-am:
|
||||
|
||||
# This directory's subdirectories are mostly independent; you can cd
|
||||
# into them and run `make' without going through this Makefile.
|
||||
# To change the values of `make' variables: instead of editing Makefiles,
|
||||
# (1) if the variable is set in `config.status', edit `config.status'
|
||||
# (which will cause the Makefiles to be regenerated when you run `make');
|
||||
# (2) otherwise, pass the desired values on the `make' command line.
|
||||
$(RECURSIVE_TARGETS):
|
||||
@failcom='exit 1'; \
|
||||
for f in x $$MAKEFLAGS; do \
|
||||
case $$f in \
|
||||
*=* | --[!k]*);; \
|
||||
*k*) failcom='fail=yes';; \
|
||||
esac; \
|
||||
done; \
|
||||
dot_seen=no; \
|
||||
target=`echo $@ | sed s/-recursive//`; \
|
||||
list='$(SUBDIRS)'; for subdir in $$list; do \
|
||||
echo "Making $$target in $$subdir"; \
|
||||
if test "$$subdir" = "."; then \
|
||||
dot_seen=yes; \
|
||||
local_target="$$target-am"; \
|
||||
else \
|
||||
local_target="$$target"; \
|
||||
fi; \
|
||||
(cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
|
||||
|| eval $$failcom; \
|
||||
done; \
|
||||
if test "$$dot_seen" = "no"; then \
|
||||
$(MAKE) $(AM_MAKEFLAGS) "$$target-am" || exit 1; \
|
||||
fi; test -z "$$fail"
|
||||
|
||||
mostlyclean-recursive clean-recursive distclean-recursive \
|
||||
maintainer-clean-recursive:
|
||||
@failcom='exit 1'; \
|
||||
for f in x $$MAKEFLAGS; do \
|
||||
case $$f in \
|
||||
*=* | --[!k]*);; \
|
||||
*k*) failcom='fail=yes';; \
|
||||
esac; \
|
||||
done; \
|
||||
dot_seen=no; \
|
||||
case "$@" in \
|
||||
distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \
|
||||
*) list='$(SUBDIRS)' ;; \
|
||||
esac; \
|
||||
rev=''; for subdir in $$list; do \
|
||||
if test "$$subdir" = "."; then :; else \
|
||||
rev="$$subdir $$rev"; \
|
||||
fi; \
|
||||
done; \
|
||||
rev="$$rev ."; \
|
||||
target=`echo $@ | sed s/-recursive//`; \
|
||||
for subdir in $$rev; do \
|
||||
echo "Making $$target in $$subdir"; \
|
||||
if test "$$subdir" = "."; then \
|
||||
local_target="$$target-am"; \
|
||||
else \
|
||||
local_target="$$target"; \
|
||||
fi; \
|
||||
(cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
|
||||
|| eval $$failcom; \
|
||||
done && test -z "$$fail"
|
||||
tags-recursive:
|
||||
list='$(SUBDIRS)'; for subdir in $$list; do \
|
||||
test "$$subdir" = . || (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) tags); \
|
||||
done
|
||||
ctags-recursive:
|
||||
list='$(SUBDIRS)'; for subdir in $$list; do \
|
||||
test "$$subdir" = . || (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) ctags); \
|
||||
done
|
||||
|
||||
ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
|
||||
list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
|
||||
unique=`for i in $$list; do \
|
||||
if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
|
||||
done | \
|
||||
$(AWK) ' { files[$$0] = 1; } \
|
||||
END { for (i in files) print i; }'`; \
|
||||
mkid -fID $$unique
|
||||
tags: TAGS
|
||||
|
||||
TAGS: tags-recursive $(HEADERS) $(SOURCES) config.h.in $(TAGS_DEPENDENCIES) \
|
||||
$(TAGS_FILES) $(LISP)
|
||||
tags=; \
|
||||
here=`pwd`; \
|
||||
if ($(ETAGS) --etags-include --version) >/dev/null 2>&1; then \
|
||||
include_option=--etags-include; \
|
||||
empty_fix=.; \
|
||||
else \
|
||||
include_option=--include; \
|
||||
empty_fix=; \
|
||||
fi; \
|
||||
list='$(SUBDIRS)'; for subdir in $$list; do \
|
||||
if test "$$subdir" = .; then :; else \
|
||||
test ! -f $$subdir/TAGS || \
|
||||
tags="$$tags $$include_option=$$here/$$subdir/TAGS"; \
|
||||
fi; \
|
||||
done; \
|
||||
list='$(SOURCES) $(HEADERS) config.h.in $(LISP) $(TAGS_FILES)'; \
|
||||
unique=`for i in $$list; do \
|
||||
if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
|
||||
done | \
|
||||
$(AWK) ' { files[$$0] = 1; } \
|
||||
END { for (i in files) print i; }'`; \
|
||||
if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \
|
||||
test -n "$$unique" || unique=$$empty_fix; \
|
||||
$(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
|
||||
$$tags $$unique; \
|
||||
fi
|
||||
ctags: CTAGS
|
||||
CTAGS: ctags-recursive $(HEADERS) $(SOURCES) config.h.in $(TAGS_DEPENDENCIES) \
|
||||
$(TAGS_FILES) $(LISP)
|
||||
tags=; \
|
||||
here=`pwd`; \
|
||||
list='$(SOURCES) $(HEADERS) config.h.in $(LISP) $(TAGS_FILES)'; \
|
||||
unique=`for i in $$list; do \
|
||||
if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
|
||||
done | \
|
||||
$(AWK) ' { files[$$0] = 1; } \
|
||||
END { for (i in files) print i; }'`; \
|
||||
test -z "$(CTAGS_ARGS)$$tags$$unique" \
|
||||
|| $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
|
||||
$$tags $$unique
|
||||
|
||||
GTAGS:
|
||||
here=`$(am__cd) $(top_builddir) && pwd` \
|
||||
&& cd $(top_srcdir) \
|
||||
&& gtags -i $(GTAGS_ARGS) $$here
|
||||
|
||||
distclean-tags:
|
||||
-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
|
||||
|
||||
distdir: $(DISTFILES)
|
||||
$(am__remove_distdir)
|
||||
mkdir $(distdir)
|
||||
@srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`; \
|
||||
topsrcdirstrip=`echo "$(top_srcdir)" | sed 's|.|.|g'`; \
|
||||
list='$(DISTFILES)'; for file in $$list; do \
|
||||
case $$file in \
|
||||
$(srcdir)/*) file=`echo "$$file" | sed "s|^$$srcdirstrip/||"`;; \
|
||||
$(top_srcdir)/*) file=`echo "$$file" | sed "s|^$$topsrcdirstrip/|$(top_builddir)/|"`;; \
|
||||
esac; \
|
||||
if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
|
||||
dir=`echo "$$file" | sed -e 's,/[^/]*$$,,'`; \
|
||||
if test "$$dir" != "$$file" && test "$$dir" != "."; then \
|
||||
dir="/$$dir"; \
|
||||
$(mkdir_p) "$(distdir)$$dir"; \
|
||||
else \
|
||||
dir=''; \
|
||||
fi; \
|
||||
if test -d $$d/$$file; then \
|
||||
if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
|
||||
cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
|
||||
fi; \
|
||||
cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
|
||||
else \
|
||||
test -f $(distdir)/$$file \
|
||||
|| cp -p $$d/$$file $(distdir)/$$file \
|
||||
|| exit 1; \
|
||||
fi; \
|
||||
done
|
||||
list='$(DIST_SUBDIRS)'; for subdir in $$list; do \
|
||||
if test "$$subdir" = .; then :; else \
|
||||
test -d "$(distdir)/$$subdir" \
|
||||
|| $(mkdir_p) "$(distdir)/$$subdir" \
|
||||
|| exit 1; \
|
||||
distdir=`$(am__cd) $(distdir) && pwd`; \
|
||||
top_distdir=`$(am__cd) $(top_distdir) && pwd`; \
|
||||
(cd $$subdir && \
|
||||
$(MAKE) $(AM_MAKEFLAGS) \
|
||||
top_distdir="$$top_distdir" \
|
||||
distdir="$$distdir/$$subdir" \
|
||||
distdir) \
|
||||
|| exit 1; \
|
||||
fi; \
|
||||
done
|
||||
-find $(distdir) -type d ! -perm -777 -exec chmod a+rwx {} \; -o \
|
||||
! -type d ! -perm -444 -links 1 -exec chmod a+r {} \; -o \
|
||||
! -type d ! -perm -400 -exec chmod a+r {} \; -o \
|
||||
! -type d ! -perm -444 -exec $(SHELL) $(install_sh) -c -m a+r {} {} \; \
|
||||
|| chmod -R a+r $(distdir)
|
||||
dist-gzip: distdir
|
||||
tardir=$(distdir) && $(am__tar) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).tar.gz
|
||||
$(am__remove_distdir)
|
||||
|
||||
dist-bzip2: distdir
|
||||
tardir=$(distdir) && $(am__tar) | bzip2 -9 -c >$(distdir).tar.bz2
|
||||
$(am__remove_distdir)
|
||||
|
||||
dist-tarZ: distdir
|
||||
tardir=$(distdir) && $(am__tar) | compress -c >$(distdir).tar.Z
|
||||
$(am__remove_distdir)
|
||||
|
||||
dist-shar: distdir
|
||||
shar $(distdir) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).shar.gz
|
||||
$(am__remove_distdir)
|
||||
|
||||
dist-zip: distdir
|
||||
-rm -f $(distdir).zip
|
||||
zip -rq $(distdir).zip $(distdir)
|
||||
$(am__remove_distdir)
|
||||
|
||||
dist dist-all: distdir
|
||||
tardir=$(distdir) && $(am__tar) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).tar.gz
|
||||
$(am__remove_distdir)
|
||||
|
||||
# This target untars the dist file and tries a VPATH configuration. Then
|
||||
# it guarantees that the distribution is self-contained by making another
|
||||
# tarfile.
|
||||
distcheck: dist
|
||||
case '$(DIST_ARCHIVES)' in \
|
||||
*.tar.gz*) \
|
||||
GZIP=$(GZIP_ENV) gunzip -c $(distdir).tar.gz | $(am__untar) ;;\
|
||||
*.tar.bz2*) \
|
||||
bunzip2 -c $(distdir).tar.bz2 | $(am__untar) ;;\
|
||||
*.tar.Z*) \
|
||||
uncompress -c $(distdir).tar.Z | $(am__untar) ;;\
|
||||
*.shar.gz*) \
|
||||
GZIP=$(GZIP_ENV) gunzip -c $(distdir).shar.gz | unshar ;;\
|
||||
*.zip*) \
|
||||
unzip $(distdir).zip ;;\
|
||||
esac
|
||||
chmod -R a-w $(distdir); chmod a+w $(distdir)
|
||||
mkdir $(distdir)/_build
|
||||
mkdir $(distdir)/_inst
|
||||
chmod a-w $(distdir)
|
||||
dc_install_base=`$(am__cd) $(distdir)/_inst && pwd | sed -e 's,^[^:\\/]:[\\/],/,'` \
|
||||
&& dc_destdir="$${TMPDIR-/tmp}/am-dc-$$$$/" \
|
||||
&& cd $(distdir)/_build \
|
||||
&& ../configure --srcdir=.. --prefix="$$dc_install_base" \
|
||||
$(DISTCHECK_CONFIGURE_FLAGS) \
|
||||
&& $(MAKE) $(AM_MAKEFLAGS) \
|
||||
&& $(MAKE) $(AM_MAKEFLAGS) dvi \
|
||||
&& $(MAKE) $(AM_MAKEFLAGS) check \
|
||||
&& $(MAKE) $(AM_MAKEFLAGS) install \
|
||||
&& $(MAKE) $(AM_MAKEFLAGS) installcheck \
|
||||
&& $(MAKE) $(AM_MAKEFLAGS) uninstall \
|
||||
&& $(MAKE) $(AM_MAKEFLAGS) distuninstallcheck_dir="$$dc_install_base" \
|
||||
distuninstallcheck \
|
||||
&& chmod -R a-w "$$dc_install_base" \
|
||||
&& ({ \
|
||||
(cd ../.. && umask 077 && mkdir "$$dc_destdir") \
|
||||
&& $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" install \
|
||||
&& $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" uninstall \
|
||||
&& $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" \
|
||||
distuninstallcheck_dir="$$dc_destdir" distuninstallcheck; \
|
||||
} || { rm -rf "$$dc_destdir"; exit 1; }) \
|
||||
&& rm -rf "$$dc_destdir" \
|
||||
&& $(MAKE) $(AM_MAKEFLAGS) dist \
|
||||
&& rm -rf $(DIST_ARCHIVES) \
|
||||
&& $(MAKE) $(AM_MAKEFLAGS) distcleancheck
|
||||
$(am__remove_distdir)
|
||||
@(echo "$(distdir) archives ready for distribution: "; \
|
||||
list='$(DIST_ARCHIVES)'; for i in $$list; do echo $$i; done) | \
|
||||
sed -e '1{h;s/./=/g;p;x;}' -e '$${p;x;}'
|
||||
distuninstallcheck:
|
||||
@cd $(distuninstallcheck_dir) \
|
||||
&& test `$(distuninstallcheck_listfiles) | wc -l` -le 1 \
|
||||
|| { echo "ERROR: files left after uninstall:" ; \
|
||||
if test -n "$(DESTDIR)"; then \
|
||||
echo " (check DESTDIR support)"; \
|
||||
fi ; \
|
||||
$(distuninstallcheck_listfiles) ; \
|
||||
exit 1; } >&2
|
||||
distcleancheck: distclean
|
||||
@if test '$(srcdir)' = . ; then \
|
||||
echo "ERROR: distcleancheck can only run from a VPATH build" ; \
|
||||
exit 1 ; \
|
||||
fi
|
||||
@test `$(distcleancheck_listfiles) | wc -l` -eq 0 \
|
||||
|| { echo "ERROR: files left in build directory after distclean:" ; \
|
||||
$(distcleancheck_listfiles) ; \
|
||||
exit 1; } >&2
|
||||
check-am: all-am
|
||||
check: check-recursive
|
||||
all-am: Makefile config.h
|
||||
installdirs: installdirs-recursive
|
||||
installdirs-am:
|
||||
install: install-recursive
|
||||
install-exec: install-exec-recursive
|
||||
install-data: install-data-recursive
|
||||
uninstall: uninstall-recursive
|
||||
|
||||
install-am: all-am
|
||||
@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
|
||||
|
||||
installcheck: installcheck-recursive
|
||||
install-strip:
|
||||
$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
|
||||
install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
|
||||
`test -z '$(STRIP)' || \
|
||||
echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
|
||||
mostlyclean-generic:
|
||||
|
||||
clean-generic:
|
||||
|
||||
distclean-generic:
|
||||
-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
|
||||
|
||||
maintainer-clean-generic:
|
||||
@echo "This command is intended for maintainers to use"
|
||||
@echo "it deletes files that may require special tools to rebuild."
|
||||
clean: clean-recursive
|
||||
|
||||
clean-am: clean-generic mostlyclean-am
|
||||
|
||||
distclean: distclean-recursive
|
||||
-rm -f $(am__CONFIG_DISTCLEAN_FILES)
|
||||
-rm -f Makefile
|
||||
distclean-am: clean-am distclean-generic distclean-hdr distclean-tags
|
||||
|
||||
dvi: dvi-recursive
|
||||
|
||||
dvi-am:
|
||||
|
||||
html: html-recursive
|
||||
|
||||
info: info-recursive
|
||||
|
||||
info-am:
|
||||
|
||||
install-data-am:
|
||||
|
||||
install-exec-am:
|
||||
|
||||
install-info: install-info-recursive
|
||||
|
||||
install-man:
|
||||
|
||||
installcheck-am:
|
||||
|
||||
maintainer-clean: maintainer-clean-recursive
|
||||
-rm -f $(am__CONFIG_DISTCLEAN_FILES)
|
||||
-rm -rf $(top_srcdir)/autom4te.cache
|
||||
-rm -f Makefile
|
||||
maintainer-clean-am: distclean-am maintainer-clean-generic
|
||||
|
||||
mostlyclean: mostlyclean-recursive
|
||||
|
||||
mostlyclean-am: mostlyclean-generic
|
||||
|
||||
pdf: pdf-recursive
|
||||
|
||||
pdf-am:
|
||||
|
||||
ps: ps-recursive
|
||||
|
||||
ps-am:
|
||||
|
||||
uninstall-am: uninstall-info-am
|
||||
|
||||
uninstall-info: uninstall-info-recursive
|
||||
|
||||
.PHONY: $(RECURSIVE_TARGETS) CTAGS GTAGS all all-am am--refresh check \
|
||||
check-am clean clean-generic clean-recursive ctags \
|
||||
ctags-recursive dist dist-all dist-bzip2 dist-gzip dist-shar \
|
||||
dist-tarZ dist-zip distcheck distclean distclean-generic \
|
||||
distclean-hdr distclean-recursive distclean-tags \
|
||||
distcleancheck distdir distuninstallcheck dvi dvi-am html \
|
||||
html-am info info-am install install-am install-data \
|
||||
install-data-am install-exec install-exec-am install-info \
|
||||
install-info-am install-man install-strip installcheck \
|
||||
installcheck-am installdirs installdirs-am maintainer-clean \
|
||||
maintainer-clean-generic maintainer-clean-recursive \
|
||||
mostlyclean mostlyclean-generic mostlyclean-recursive pdf \
|
||||
pdf-am ps ps-am tags tags-recursive uninstall uninstall-am \
|
||||
uninstall-info-am
|
||||
|
||||
# Tell versions [3.59,3.63) of GNU make to not export all variables.
|
||||
# Otherwise a system limit (for SysV at least) may be exceeded.
|
||||
.NOEXPORT:
|
||||
Executable
+59
@@ -0,0 +1,59 @@
|
||||
|
||||
# This is a very rudimentary multiarchitecture makefile
|
||||
# You need to uncomment the default block of make variables you need
|
||||
# Some key things to watch for are the following defines
|
||||
# -DREGRESSIONTEST : enables a main(){} inside of
|
||||
# the H5Part.cc file that does simple regression testing.
|
||||
# -DPARALLEL_IO : If you want to use parallel HDF5, you have to
|
||||
# enable this. Otherwise, you get only the serial
|
||||
# implementation of the library.
|
||||
|
||||
# MacOS-X Serial
|
||||
#CXX = c++
|
||||
#CC = cc
|
||||
#F90 = xlf
|
||||
#H5HOME = /usr/local
|
||||
#CFLAGS = -O -g -I$(H5HOME)/include
|
||||
#LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
|
||||
|
||||
# AIX/SP-2 Parallel : Seaborg
|
||||
#CXX = mpCC_r
|
||||
#CC = mpcc_r
|
||||
#F90 = mpxlf
|
||||
#H5HOME = /usr/common/usg/hdf5/1.4.4/parallel
|
||||
#H4HOME = /usr/common/usg/hdf/default
|
||||
#OPT = -qarch=auto -qtune=auto-qcache=auto -O3 -qhot
|
||||
#CFLAGS = -g -bmaxdata:800000000 -bmaxstack:256000000 -I$(H5HOME)/include
|
||||
#LDFLAGS = -L$(H5HOME)/lib -lhdf5 -L$(H4HOME)/lib -lz -lm
|
||||
|
||||
# Linux Serial
|
||||
#CXX = g++
|
||||
#CC = gcc
|
||||
#F90 = g77 # or could be pgif90
|
||||
#CFLAGS = -O -g -I$(H5HOME)/include
|
||||
#LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
|
||||
|
||||
# Linux Jacquard
|
||||
CC = mpicc
|
||||
CXX = mpicxx
|
||||
F90 = mpif90
|
||||
H5HOME = /usr/common/usg/hdf5/1.6.3/parallel
|
||||
CFLAGS = -O2 -DPARALLEL_IO -DH5_HAVE_PARALLEL -I$(H5HOME)/include
|
||||
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
|
||||
|
||||
# Linux Parallel
|
||||
#CC = gcc
|
||||
#CXX = g++
|
||||
#F90 = g77
|
||||
#H5HOME = /usr/local
|
||||
# /usr/common/usg/hdf5/1.6.3/parallel
|
||||
#MPIHOME = /usr/local
|
||||
#CFLAGS = -O -g -DPARALLEL_IO -DH5_HAVE_PARALLEL -I$(H5HOME)/include
|
||||
#LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lmpich -lrt -lz -lm
|
||||
|
||||
all: H5PartTest H5PartTest.o H5Part.o
|
||||
parallel: H5PartTest H5PartTest.o H5Part.o H5PartTestParallel H5PartAndreasTest # parallel regression tests
|
||||
fortran: H5PartF.o # fortran bindings
|
||||
|
||||
include rules.make
|
||||
|
||||
@@ -1,401 +0,0 @@
|
||||
#### H5PART trunk ############################################################
|
||||
|
||||
* h5_file_t is now uintptr_t
|
||||
* experimental version of parallel H5Fed
|
||||
* new API function for file open using properties (similiar to hdf5 properties)
|
||||
|
||||
#### H5PART 1.99.10 ############################################################
|
||||
|
||||
* C99 compiler required
|
||||
* C API with inline functions
|
||||
|
||||
|
||||
#### H5PART 1.99.0 ############################################################
|
||||
|
||||
rudimental implementation of a grid manager
|
||||
|
||||
Important changes from version 1.6 to 1.99.0
|
||||
|
||||
Renamed type:
|
||||
H5PartFile -> h5_file_t
|
||||
h5part_int64_t -> h5_int64_t
|
||||
h5part_float64_t -> h5_float_t
|
||||
|
||||
Renamed functions:
|
||||
All function not related to a specific data model have been renamed from
|
||||
H5PartFunction() to H5Function().
|
||||
|
||||
Example:
|
||||
H5PartOpenFile() -> H5OpenFile()
|
||||
|
||||
Removed functions:
|
||||
To simplify the API, there is just one function to open a file. It's the
|
||||
same function for serial and parallel code.
|
||||
|
||||
#### H5PART 1.6.6 ############################################################
|
||||
|
||||
Fixed typo (Write instead of Read) in the h5bl_3d_read_scalar_field* Fortran
|
||||
interface.
|
||||
|
||||
Added missing type normalization for int32 type.
|
||||
|
||||
Rewrite of h5pAttrib tool.
|
||||
|
||||
#### H5PART 1.6.5 ############################################################
|
||||
|
||||
Fixed several build errors reported by Iuri Prilepov on Ubuntu 11.04.
|
||||
|
||||
#### H5PART 1.6.4 ############################################################
|
||||
|
||||
Fixed bug where H5PartSetViewIndices was not setting an empty view when the
|
||||
number of elements is 0.
|
||||
|
||||
Set a threshold on the HDF5 alignment parameter so that small metadata writes
|
||||
are not aligned, which causes large gaps in the file.
|
||||
|
||||
#### H5PART 1.6.3 ############################################################
|
||||
|
||||
New build system uses libtool and can build shared libraries.
|
||||
|
||||
Fixed a bug that incorrectly identifies the number of selected points in a view
|
||||
when using H5PartSetViewIndices.
|
||||
|
||||
Fixed bug in Fortran test reported by several people, as well as several
|
||||
incorrect views set in the C test that were causing segfaults.
|
||||
|
||||
Fixed name mismatches in the Fortran interface, and an off-by-one indexing
|
||||
problem.
|
||||
|
||||
#### H5PART 1.6.2 ############################################################
|
||||
|
||||
Removed H5PartSetViewEmpty
|
||||
--------------------------
|
||||
|
||||
An empty view can now be selected with:
|
||||
H5PartSetNumParticles(file, 0);
|
||||
|
||||
Bug Fixes to Attribute Calls in Fortran API
|
||||
-------------------------------------------
|
||||
|
||||
Fixed a problem where attribute values were reverting to zero.
|
||||
|
||||
#### H5PART 1.6.1 ############################################################
|
||||
|
||||
Chunking in the H5Part API
|
||||
--------------------------
|
||||
|
||||
There is now an H5Part equivalent H5PartSetChunkSize to the existing
|
||||
H5BlockDefine3DChunkDims call. Both of these calls enable the chunking
|
||||
mechanism in the underlying HDF5 layer. Chunking is used in combination
|
||||
with the aligned open calls to pad datasets to alignment multiples
|
||||
on disk.
|
||||
|
||||
All Steps Available on Write
|
||||
----------------------------
|
||||
|
||||
Previously, existing steps in a file were only accessible in read-only mode.
|
||||
Now, all steps are available in all modes, including write-truncate and
|
||||
write-append. Thus, it is now possible to overwrite existing data in write
|
||||
mode. To help alert the user to this possibility, a warning is issued every
|
||||
time an existing dataset is written to. Warnings can be printed by setting
|
||||
the verbosity to H5PART_VERB_WARN or higher.
|
||||
|
||||
New Throttling Routine
|
||||
----------------------
|
||||
|
||||
Previously, a throttle factor of N meant that for P processors, the total
|
||||
number of P writes were divided into N batches of P/N writes.
|
||||
|
||||
To better accommodate round-robin lustre striping, the new policy is to
|
||||
execute P/N batches of N writes. Thus, matching N to the number of stripes
|
||||
results in the desirable 1-1 matching of writers to stripes.
|
||||
|
||||
Other Fixes
|
||||
-----------
|
||||
|
||||
* The configure script should correctly detect PGI compilers now.
|
||||
* There was a small memory leak in the Fortran file open calls.
|
||||
* There was a compile error with HDF5 1.6.x due to a missing assignment.
|
||||
|
||||
#### H5PART 1.6 ##############################################################
|
||||
|
||||
Updated Documentation
|
||||
---------------------
|
||||
|
||||
The Fortran API has been added to the doxygen documentation. Most entries have
|
||||
a reference to their respective C API call.
|
||||
|
||||
Regression Test Suite
|
||||
---------------------
|
||||
|
||||
The test subdirectory has been reorganized to include a systematic series
|
||||
of regression tests of common use cases for the API. The goal is to have both
|
||||
complete coverage of the API (every call is exercised) and testing of some
|
||||
unlikely or unsuspected values and cases.
|
||||
|
||||
Currently, the C test covers the entire H5Part API and the Fortran test is
|
||||
still in development.
|
||||
|
||||
Benchmark Utilities
|
||||
-------------------
|
||||
|
||||
Two benchmarking utilities, H5PartBench and H5BlockBench, have been added to
|
||||
the tools collection. Both require the parallel library and have functionality
|
||||
and syntax similar to the IOR benchmark:
|
||||
|
||||
http://sourceforge.net/projects/ior-sio/
|
||||
|
||||
File Mode Flags
|
||||
---------------
|
||||
|
||||
Previously, the only flags used were H5PART_READ, H5PART_WRITE, and
|
||||
H5PART_APPEND, and these were mutually exclusive. Additional flags have been
|
||||
added to select the underlying virtual file driver (VFD) that HDF5 uses in
|
||||
parallel mode and to accommodate the lustre filesystem:
|
||||
|
||||
H5PART_VFD_MPIPOSIX (use the MPI-POSIX driver, which bypasses MPI-IO)
|
||||
H5PART_VFD_MPIIO_IND (use MPI-IO in independent mode)
|
||||
H5PART_FS_LUSTRE (activate H5P tunings for the lustre stripe size)
|
||||
|
||||
These flags can be specified using the typical bitwise OR method, e.g.
|
||||
|
||||
char flag = H5PART_WRITE | H5PART_VFD_MPIPOSIX | H5PART_FS_LUSTRE;
|
||||
|
||||
will select write mode with these two additional options.
|
||||
|
||||
The parallel library now defaults to using the MPI-IO collective mode driver
|
||||
(previously it used independent mode). The collective buffering algorithm in
|
||||
the Cray XT4/5 environment has been substantially improved in the last year,
|
||||
and defaulting to collective mode allows us to take advantage of these
|
||||
improvements automatically.
|
||||
|
||||
There are also new open calls H5PartOpenAlign and H5PartOpenParallelAlign that
|
||||
take an additional 'alignment' value. This value is passed to HDF5 and used to
|
||||
pad out objects so that they align to filesystem boundaries. For instance, it
|
||||
would make sense to use the stripe size as the alignment value when writing to
|
||||
a lustre filesystem.
|
||||
|
||||
Unified 'View' Model
|
||||
--------------------
|
||||
|
||||
Views are now supported in both read and write mode (previously only supported
|
||||
in read mode). It is possible to specify non-sensical views: you could for
|
||||
instance specify a read view that is larger than the dataset on disk. Or you
|
||||
could create a write view that is larger than the data in memory. In those
|
||||
cases, you will encounter an error when you try to perform a read or write
|
||||
operation on a dataset.
|
||||
|
||||
There are two new methods for selecting views. H5PartSetNumParticlesStrided
|
||||
selects a view with $n$ particles per processor, but such that the data in
|
||||
memory is expected to have a 'stride' factor. For instance, if you have
|
||||
particle data with fields $x$ and $y$ and a single array with entries
|
||||
$x1,y1,x2,y2...$, then the stride factor is 2. Striding works for both reads
|
||||
and writes and only affects the view of memory: individual fields are still
|
||||
stored as individual arrays on disk.
|
||||
|
||||
The second new method is H5PartSetViewIndices, which allows for point
|
||||
selections of datasets. You can pass a list of indices for the points you
|
||||
want to select. This is useful, for instance, when interfacing with FastBit
|
||||
to perform queries that select a small subset of non-contiguous particles.
|
||||
|
||||
Because views are now supported on write, it is possible to write a dataset
|
||||
using multiple 'passes' or to leave some values unwritten.
|
||||
|
||||
Also, all views are now *inclusive*, so that a view of (0,9) corresponds
|
||||
to the 10 items 0, 1, 2, ... 9.
|
||||
|
||||
Internal Handling of Dataspaces
|
||||
-------------------------------
|
||||
|
||||
H5PartSetNumParticles and H5PartSetNumParticlesStrided now share the same
|
||||
HDF5 dataspace state in the H5PartFile struct with the calls that modify
|
||||
the view (H5PartSetView etc.). Previously, the memory and disk dataspaces
|
||||
were regenerated from the view on every read access, which was unnecessary.
|
||||
|
||||
Autogeneration of API Calls
|
||||
---------------------------
|
||||
|
||||
Python scripts have been added to automatically generate read/write call
|
||||
variants for different data types.
|
||||
|
||||
Renamed Fortran Include
|
||||
-----------------------
|
||||
|
||||
The automake system no longer greps the *F90.inc files to generate an include
|
||||
called 'H5Part.inc'. Instead, the *F90.inc files have been renamed to *.f90,
|
||||
and awk is used to generate an 'H5PartF.h' file (the same naming convention
|
||||
as in MPI's 'mpif.h').
|
||||
|
||||
The change to *.f90 was necessary to facilitate integration of the Fortran
|
||||
API into doxygen. Note that the *.f90 files will not compile, nor can they
|
||||
be included directly. Simply use
|
||||
|
||||
include 'H5PartF.h'
|
||||
|
||||
in your Fortran code to include all the definitions for Fortran H5Part/H5Block
|
||||
calls.
|
||||
|
||||
64 Char Limit on Dataset Names
|
||||
------------------------------
|
||||
|
||||
Previously, a user could overrun internal buffers for dataset names. Now, a
|
||||
fixed limit of 64 chars is imposed. Dataset names that are longer than this are
|
||||
truncated and a warning is printed. We expect that most users are using
|
||||
short canonical names like x, px, id, etc.
|
||||
|
||||
Changes to Existing API
|
||||
-----------------------
|
||||
|
||||
The H5BlockGetFieldInfo and H5BlockGetFieldInfoByName calls now both include
|
||||
a parameter for the 'type' of the field.
|
||||
|
||||
|
||||
#### H5PART 1.4 ##############################################################
|
||||
|
||||
Error Handling
|
||||
--------------
|
||||
Now all functions, in which an error could occure, are returning a
|
||||
value. This value is either a 64bit integer or a pointer.
|
||||
|
||||
A negative 64bit integer as result indicates an error. Values >= 0
|
||||
indicates successfull execution. This is similiar to the convention
|
||||
used in UNIX system calls, but we do not return -1 but the error
|
||||
number (which is always negative).
|
||||
|
||||
For functions returning a pointer the NULL-pointer is used to indicate
|
||||
an error. You can call the function H5PartGetErrno() to get the error
|
||||
number. For the time being there is no strerror(3) or perror(3)
|
||||
equivalent.
|
||||
|
||||
|
||||
API Changes
|
||||
-----------
|
||||
There are several changes in the API of H5Part. The biggest change is
|
||||
a side-effect of the implementation of strict error handling. The
|
||||
impact to the existing C/C++ code is very small. But now you *can*
|
||||
and *should* implement some kind of error handling. The simplest
|
||||
error handling is to set an error handler which aborts the program as
|
||||
soon as an error occured.
|
||||
|
||||
The next "biggest" change is the use of H5Part types instead of "long
|
||||
long" and "double". The replacement of "long long" is "h5part_int64_t"
|
||||
and for "double" "h5part_float64_t". This change has now effect in
|
||||
Fortran.
|
||||
|
||||
In some functions the argument type changed from "int" to
|
||||
"h5part_int64_t". Since on most systems "int" is a 32bit integer,
|
||||
calls to these functions must be adapted to the new API. In C/C++ the
|
||||
compiler will complain about it. But in Fortran you will *not* get an
|
||||
error message.So, you must check your Fortran code carefully.
|
||||
|
||||
Changes in detail (not listed are functions where only the return
|
||||
type changed from any to "h5part_int64_t"):
|
||||
|
||||
New API Changes to old API
|
||||
|
||||
h5part_int64_t void
|
||||
H5PartSetNumParticles (
|
||||
H5PartFile *f,
|
||||
h5part_int64_t nparticles long long
|
||||
);
|
||||
|
||||
h5part_int64_t int
|
||||
H5PartWriteDataFloat64 (
|
||||
H5PartFile *f,
|
||||
char *name,
|
||||
h5part_float64_t *dta double
|
||||
);
|
||||
|
||||
h5part_int64_t int
|
||||
H5PartWriteDataInt64 (
|
||||
H5PartFile *f,
|
||||
char *name,
|
||||
h5part_int64_t *dta long long
|
||||
);
|
||||
|
||||
h5part_int64_t void
|
||||
H5PartSetStep (
|
||||
H5PartFile *f,
|
||||
h5part_int64_t step int
|
||||
);
|
||||
|
||||
h5part_int64_t void
|
||||
H5PartSetView (
|
||||
H5PartFile *f,
|
||||
h5part_int64_t start, long long
|
||||
h5part_int64_t end long long
|
||||
);
|
||||
|
||||
h5part_int64_t int
|
||||
H5PartGetView (
|
||||
H5PartFile *f,
|
||||
h5part_int64_t *start, long long
|
||||
h5part_int64_t *end long long
|
||||
);
|
||||
|
||||
h5part_int64_t int
|
||||
H5PartReadDataFloat64 (
|
||||
H5PartFile *f,
|
||||
char *name,
|
||||
h5part_float64_t *dta double
|
||||
);
|
||||
|
||||
h5part_int64_t int
|
||||
H5PartReadDataInt64 (
|
||||
H5PartFile *f,
|
||||
char *name,
|
||||
h5part_int64_t *dta long long
|
||||
);
|
||||
|
||||
h5part_int64_t void
|
||||
H5PartReadParticleStep (
|
||||
H5PartFile *f,
|
||||
h5part_int64_t step, int
|
||||
h5part_float64_t *x, double
|
||||
h5part_float64_t *y, double
|
||||
h5part_float64_t *z, double
|
||||
h5part_float64_t *px, double
|
||||
h5part_float64_t *py, double
|
||||
h5part_float64_t *pz, double
|
||||
h5part_int64_t *id long long
|
||||
);
|
||||
|
||||
New functions:
|
||||
|
||||
h5part_int64_t
|
||||
H5PartSetVerbosityLevel (
|
||||
unsigned int
|
||||
);
|
||||
|
||||
h5part_int64_t
|
||||
H5PartSetErrorHandler (
|
||||
h5part_error_handler handler
|
||||
);
|
||||
|
||||
h5part_int64_t
|
||||
H5PartGetErrno (
|
||||
void
|
||||
);
|
||||
|
||||
h5part_int64_t
|
||||
H5PartDefaultErrorHandler (
|
||||
const char *funcname,
|
||||
const h5part_int64_t eno,
|
||||
const char *fmt,
|
||||
...
|
||||
);
|
||||
|
||||
h5part_int64_t
|
||||
H5PartAbortErrorHandler (
|
||||
const char *funcname,
|
||||
const h5part_int64_t eno,
|
||||
const char *fmt,
|
||||
...
|
||||
);
|
||||
|
||||
Removed functions:
|
||||
|
||||
int
|
||||
H5PartFileIsValid (
|
||||
H5PartFile *f
|
||||
);
|
||||
|
||||
@@ -0,0 +1,393 @@
|
||||
==============================================================================
|
||||
README file for H5Part configure
|
||||
==============================================================================
|
||||
|
||||
+ 0. HDF5 library
|
||||
-----------------
|
||||
|
||||
Make sure you have a working version of the HDF5 library in your computer. If you plan
|
||||
to use parallel I/O you need to use a parallel HDF5 version. If you don't have the
|
||||
library download the sources from http://hdf.ncsa.uiuc.edu/HDF5/
|
||||
|
||||
+ 1. Quick start (If you feel lucky...)
|
||||
----------------------------------------
|
||||
|
||||
For many platforms, where compilers are installed in the "default" location
|
||||
and all the environment variables are set correctly, it should be sufficient
|
||||
to type:
|
||||
|
||||
./configure [OPTIONS] && make [install]
|
||||
|
||||
to have the libraries and test program compiled.
|
||||
|
||||
|
||||
==============================================================================
|
||||
|
||||
|
||||
+ 2. configure line options
|
||||
----------------------------
|
||||
|
||||
(1) Enable options
|
||||
--enable-fortran
|
||||
--enable-parallel
|
||||
--enable-tools
|
||||
--enable-python
|
||||
--enable-64 (only for AIX and Irix)
|
||||
|
||||
(2) Setting compilers related variables manually
|
||||
To assign environment variables (e.g., CC, CFLAGS...), specify them as
|
||||
VAR=VALUE. See below for descriptions of some of the useful variables.
|
||||
|
||||
Compiler environment variables:
|
||||
CC C compiler command
|
||||
CXX C++ compiler command
|
||||
FC Fortran compiler command
|
||||
|
||||
(3) Setting prefix for installation manually
|
||||
--prefix=PREFIX install files in PREFIX
|
||||
|
||||
|
||||
For more information, type:
|
||||
|
||||
./configure --help
|
||||
|
||||
|
||||
==============================================================================
|
||||
|
||||
|
||||
+ 3. Platform specific settings for compiling libraries & test programs
|
||||
------------------------------------------------------------------------
|
||||
|
||||
Building
|
||||
make : builds the libraries and test programs
|
||||
make install: builds and installs
|
||||
make clean : removes extraneous object files
|
||||
make distclean : returns configuration to unconfigured state
|
||||
|
||||
As tested on hosts:
|
||||
|
||||
(1) Davinci <davinci.nersc.gov> (Linux"SUSE"-ia64)
|
||||
---------------------------------------------------
|
||||
FIRST THING FIRST!! Type:
|
||||
|
||||
module load intel
|
||||
to have the proper compilers set up for use.
|
||||
|
||||
module load hdf5_par
|
||||
|
||||
[NOTE: module load hdf5 does not work at this moment.
|
||||
Possible installation error of HDF5 on Davinci.]
|
||||
|
||||
|
||||
Brief profile:
|
||||
CC = icc
|
||||
CXX = icc
|
||||
FC = ifort
|
||||
MPICC = icc
|
||||
MPICXX = icc
|
||||
MPIFC = ifort
|
||||
|
||||
If default doesn't work, try:
|
||||
|
||||
For C shell:
|
||||
env CC=icc CXX=icc FC=ifort MPICC=icc MPICXX=icc MPIFC=ifort ./configure && make install
|
||||
|
||||
For Korn or Bourne shell:
|
||||
CC=icc CXX=icc FC=ifort MPICC=icc MPICXX=icc MPIFC=ifort ./configure && make install
|
||||
|
||||
And, of course, you should add configure options, such as --enable-fortran --enable-parallel.
|
||||
|
||||
|
||||
On this host, executing:
|
||||
|
||||
For C shell:
|
||||
env CC=icc CXX=icc FC=ifort MPICC=icc MPICXX=icc MPIFC=ifort ./configure --enable-fortran --enable-parallel && make install
|
||||
|
||||
For Korn or Bourne shell:
|
||||
CC=icc CXX=icc FC=ifort MPICC=icc MPICXX=icc MPIFC=ifort ./configure --enable-fortran --enable-parallel && make install
|
||||
|
||||
has functioned correctly.
|
||||
|
||||
|
||||
To run test program, go to test directory:
|
||||
|
||||
(i) Serial test
|
||||
run:
|
||||
./H5testF
|
||||
./H5PartTest
|
||||
|
||||
(ii) Parallel test
|
||||
run:
|
||||
mpirun 2 H5testFpar
|
||||
mpirun 2 H5PartTestP
|
||||
|
||||
NOTE: Number 2 above is a arbitrary number that indicates the number of processes.
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
(2) Jacquard <jacquard.nersc.gov> (Linux"SUSE"-x86_64)
|
||||
-------------------------------------------------------
|
||||
Brief profile:
|
||||
CC = pathcc
|
||||
CXX = pathCC
|
||||
FC = pathf90
|
||||
MPICC = mpicc
|
||||
MPICXX = mpicxx
|
||||
MPIFC = mpif90
|
||||
|
||||
|
||||
|
||||
If default doesn't work, try:
|
||||
|
||||
For C shell:
|
||||
env CC=pathcc CXX=pathCC FC=pathf90 MPICC=mpicc MPICXX=mpicxx MPIFC=mpif90 ./configure && make install
|
||||
|
||||
For Korn or Bourne shell:
|
||||
CC=pathcc CXX=pathCC FC=pathf90 MPICC=mpicc MPICXX=mpicxx MPIFC=mpif90 ./configure && make install
|
||||
|
||||
And, of course, you should add configure options, such as --enable-fortran --enable-parallel.
|
||||
|
||||
|
||||
|
||||
On this host, executing:
|
||||
|
||||
For C shell:
|
||||
env CC=pathcc CXX=pathCC FC=pathf90 MPICC=mpicc MPICXX=mpicxx MPIFC=mpif90 ./configure --enable-fortran --enable-parallel && make install
|
||||
|
||||
For Korn or Bourne shell:
|
||||
CC=pathcc CXX=pathCC FC=pathf90 MPICC=mpicc MPICXX=mpicxx MPIFC=mpif90 ./configure --enable-fortran --enable-parallel && make install
|
||||
|
||||
has functioned correctly.
|
||||
|
||||
|
||||
|
||||
To run test program, go to test directory:
|
||||
|
||||
(i) Serial test
|
||||
run:
|
||||
./H5testF
|
||||
./H5PartTest
|
||||
|
||||
(ii) Parallel test
|
||||
In Jacquard, we need a script to run parallel programs, since Jacquard does not support interactive parallel processing. Instead, we need to submit the task to a queue. A sample script (run_H5testFpar.scr) may look like below:
|
||||
|
||||
+++++++++++++++++++++++++++++++++++++++
|
||||
#!/bin/csh
|
||||
#PBS -l nodes=1:ppn=2,walltime=00:05:00
|
||||
#PBS -N H5testFpar
|
||||
#PBS -o H5testFpar.out
|
||||
#PBS -e H5testFpar.err
|
||||
#PBS -q debug
|
||||
#PBS -A mpccc
|
||||
#PBS -V
|
||||
|
||||
setenv PBS_OWORKDIR /home/H5Part/test
|
||||
|
||||
cd $PBS_O_WORKDIR
|
||||
mpirun -np 2 ./H5testFpar
|
||||
+++++++++++++++++++++++++++++++++++++++
|
||||
|
||||
Then, we need to submit the task to a queue by running:
|
||||
|
||||
qsub run_H5testFpar.scr
|
||||
|
||||
After processed, the result will appear in H5testFpar.out, and error messages will appear in H5testFpar.err.
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
(3) Bassi <bassi.nersc.ogv> (AIX5.3.0.0-Power 3)
|
||||
-------------------------------------------------
|
||||
FIRST THING FIRST!! Type:
|
||||
|
||||
module load gcc
|
||||
|
||||
to have the proper compilers set up for use.
|
||||
|
||||
Brief profile:
|
||||
CC = cc_r
|
||||
CXX = cc_r
|
||||
FC = xlf_r
|
||||
MPICC = mpcc_r
|
||||
MPICXX = mpcc_r
|
||||
MPIFC = mpxlf_r
|
||||
|
||||
|
||||
|
||||
If default doesn't work, try:
|
||||
|
||||
For C shell:
|
||||
env CC=cc_r CXX=cc_r FC=xlf_r MPICC=mpcc_r MPICXX=mpcc_r MPIFC=mpxlf_r ./configure && make install
|
||||
|
||||
For Korn or Bourne shell:
|
||||
CC=cc_r CXX=cc_r FC=xlf_r MPICC=mpcc_r MPICXX=mpcc_r MPIFC=mpxlf_r ./configure && make install
|
||||
|
||||
And, of course, you should add configure options, such as --enable-fortran --enable-parallel.
|
||||
|
||||
|
||||
|
||||
On this host, executing:
|
||||
|
||||
For C shell:
|
||||
env CC=cc_r CXX=cc_r FC=xlf_r MPICC=mpcc_r MPICXX=mpcc_r MPIFC=mpxlf_r ./configure --enable-fortran --enable-parallel && make install
|
||||
|
||||
For Korn or Bourne shell:
|
||||
CC=cc_r CXX=cc_r FC=xlf_r MPICC=mpcc_r MPICXX=mpcc_r MPIFC=mpxlf_r ./configure --enable-fortran --enable-parallel && make install
|
||||
|
||||
has functioned correctly.
|
||||
|
||||
|
||||
|
||||
To run test program, go to test directory:
|
||||
|
||||
(i) Serial test
|
||||
run:
|
||||
./H5testF
|
||||
./H5PartTest
|
||||
|
||||
(ii) Parallel test
|
||||
run:
|
||||
unsetenv MP_SINGLE_THREAD
|
||||
poe ./H5PartTestP -procs 2 -nodes 1
|
||||
poe ./H5testFpar -procs 2 -nodes 1
|
||||
|
||||
For more details on how to run parallel programs on Bassi, go to:
|
||||
|
||||
http://www.nersc.gov/nusers/resources/bassi/running_jobs/
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
(4) Starsky <starsky.lbl.gov> (Darwin8.5.0-PowerPC)
|
||||
----------------------------------------------------
|
||||
FIRST THING FIRST!! Set environment variables: (in tcsh)
|
||||
|
||||
setenv LD_LIBRARY_PATH /usr/local/g95/lib/gcc-lib/powerpc-apple-darwin8.5.0/4.0.3/
|
||||
setenv PATH ${PATH}:/usr/local/g95/bin
|
||||
|
||||
NOTE: This environment variable setting is specifit to Starsky. It is to make configure find the fortran compiler.
|
||||
|
||||
Brief profile:
|
||||
CC = gcc
|
||||
CXX = g++
|
||||
FC = g95
|
||||
|
||||
|
||||
|
||||
If default doesn't work, try:
|
||||
|
||||
For C shell:
|
||||
env CC=gcc CXX=g++ FC=g95 ./configure && make install
|
||||
|
||||
For Korn or Bourne shell:
|
||||
CC=gcc CXX=g++ FC=g95 ./configure && make install
|
||||
|
||||
And, of course, you should add configure options, such as --enable-fortran --enable-parallel.
|
||||
|
||||
|
||||
|
||||
On this host, executing:
|
||||
|
||||
For C shell:
|
||||
env CC=gcc CXX=g++ FC=g95 ./configure --enable-fortran && make install
|
||||
|
||||
For Korn or Bourne shell:
|
||||
CC=gcc CXX=g++ FC=g95 ./configure --enable-fortran && make install
|
||||
|
||||
has functioned correctly.
|
||||
|
||||
|
||||
|
||||
To run test program, go to test directory:
|
||||
|
||||
(i) Serial test
|
||||
run:
|
||||
./H5testF
|
||||
./H5PartTest
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
(5) Linux AMD64 Visualization group workstations (Linux"SUSE"-x86_64)
|
||||
---------------------------------------------------------
|
||||
Brief profile:
|
||||
CC = gcc
|
||||
CXX = g++
|
||||
FC = g95
|
||||
|
||||
|
||||
|
||||
If default doesn't work, try:
|
||||
|
||||
For C shell:
|
||||
env CC=gcc CXX=g++ FC=g95 ./configure && make install
|
||||
|
||||
For Korn or Bourne shell:
|
||||
CC=gcc CXX=g++ FC=g95 ./configure && make install
|
||||
|
||||
And, of course, you should add configure options, such as --enable-fortran --enable-parallel.
|
||||
|
||||
|
||||
|
||||
On this host, executing:
|
||||
|
||||
For C shell:
|
||||
env CC=gcc CXX=g++ FC=g95 ./configure --enable-fortran && make install
|
||||
|
||||
For Korn or Bourne shell:
|
||||
CC=gcc CXX=g++ FC=g95 ./configure --enable-fortran && make install
|
||||
|
||||
has functioned correctly.
|
||||
|
||||
|
||||
|
||||
To run test program, go to test directory:
|
||||
|
||||
(i) Serial test
|
||||
run:
|
||||
./H5testF
|
||||
./H5PartTest
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
==============================================================================
|
||||
|
||||
|
||||
+ 4. Trouble shooting (Things to check for...)
|
||||
--------------------------------------------
|
||||
(0) Have you set the LD_LIBRARY_PATH?
|
||||
---Some systems require the user to manually set the environment variable, LD_LIBRARY_PATH. To do so:
|
||||
|
||||
set the environment variable HDF5ROOT or PHDF5ROOT to point to your installation of HDF5 (serial and/or parallel respectively).
|
||||
|
||||
For Korn or Bourne shell:
|
||||
LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${HDF5ROOT}/lib;export LD_LIBRARY_PATH
|
||||
LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:{PHDF5ROOT}/lib;export LD_LIBRARY_PATH
|
||||
|
||||
For C shell:
|
||||
setenv LD_LIBRARY_PATH ${LD_LIBRARY_PATH}:${HDF5ROOT}/lib
|
||||
setenv LD_LIBRARY_PATH ${LD_LIBRARY_PATH}:${PHDF5ROOT}/lib
|
||||
|
||||
Note that the values of HDF5ROOT & PHDF5ROOT will be in the "summary" section when you run configure.
|
||||
|
||||
Not properly set LD_LIBRARY_PATH value may result in a runtime error:
|
||||
|
||||
./H5PartTest: error while loading shared libraries: libhdf5.so.0: cannot open shared object file: No such file or directory
|
||||
|
||||
(1) Are the compilers set correctly?
|
||||
---Check with: which COMPILER
|
||||
|
||||
(2) Have you installed HDF5?
|
||||
---You can get it at: http://vis.lbl.gov/Research/AcceleratorSAPP/index.html
|
||||
|
||||
(3) Have you loaded the proper modules?
|
||||
---It is necessary in Davinci & Bassi, and configure && make install may not work without it.
|
||||
|
||||
|
||||
|
||||
Vendored
+850
@@ -0,0 +1,850 @@
|
||||
# generated automatically by aclocal 1.9.5 -*- Autoconf -*-
|
||||
|
||||
# Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003, 2004,
|
||||
# 2005 Free Software Foundation, Inc.
|
||||
# This file is free software; the Free Software Foundation
|
||||
# gives unlimited permission to copy and/or distribute it,
|
||||
# with or without modifications, as long as this notice is preserved.
|
||||
|
||||
# This program is distributed in the hope that it will be useful,
|
||||
# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
|
||||
# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
|
||||
# PARTICULAR PURPOSE.
|
||||
|
||||
# Copyright (C) 2002, 2003, 2005 Free Software Foundation, Inc.
|
||||
#
|
||||
# This file is free software; the Free Software Foundation
|
||||
# gives unlimited permission to copy and/or distribute it,
|
||||
# with or without modifications, as long as this notice is preserved.
|
||||
|
||||
# AM_AUTOMAKE_VERSION(VERSION)
|
||||
# ----------------------------
|
||||
# Automake X.Y traces this macro to ensure aclocal.m4 has been
|
||||
# generated from the m4 files accompanying Automake X.Y.
|
||||
AC_DEFUN([AM_AUTOMAKE_VERSION], [am__api_version="1.9"])
|
||||
|
||||
# AM_SET_CURRENT_AUTOMAKE_VERSION
|
||||
# -------------------------------
|
||||
# Call AM_AUTOMAKE_VERSION so it can be traced.
|
||||
# This function is AC_REQUIREd by AC_INIT_AUTOMAKE.
|
||||
AC_DEFUN([AM_SET_CURRENT_AUTOMAKE_VERSION],
|
||||
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|
||||
|
||||
# AM_AUX_DIR_EXPAND -*- Autoconf -*-
|
||||
|
||||
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|
||||
#
|
||||
# This file is free software; the Free Software Foundation
|
||||
# gives unlimited permission to copy and/or distribute it,
|
||||
# with or without modifications, as long as this notice is preserved.
|
||||
|
||||
# For projects using AC_CONFIG_AUX_DIR([foo]), Autoconf sets
|
||||
# $ac_aux_dir to `$srcdir/foo'. In other projects, it is set to
|
||||
# `$srcdir', `$srcdir/..', or `$srcdir/../..'.
|
||||
#
|
||||
# Of course, Automake must honor this variable whenever it calls a
|
||||
# tool from the auxiliary directory. The problem is that $srcdir (and
|
||||
# therefore $ac_aux_dir as well) can be either absolute or relative,
|
||||
# depending on how configure is run. This is pretty annoying, since
|
||||
# it makes $ac_aux_dir quite unusable in subdirectories: in the top
|
||||
# source directory, any form will work fine, but in subdirectories a
|
||||
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||||
#
|
||||
# $ac_aux_dir/missing
|
||||
# fails when called from a subdirectory if $ac_aux_dir is relative
|
||||
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||||
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||||
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||||
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|
||||
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|
||||
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|
||||
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# harmless because $srcdir is `.', but things will broke when you
|
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# start a VPATH build or use an absolute $srcdir.
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|
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||||
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||||
# unfortunately $(top_srcdir) has no meaning in configure.
|
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# However there are other variables, like CC, which are often used in
|
||||
# configure, and could therefore not use this "fixed" $ac_aux_dir.
|
||||
#
|
||||
# Another solution, used here, is to always expand $ac_aux_dir to an
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|
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|
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|
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|
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# This file is free software; the Free Software Foundation
|
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# gives unlimited permission to copy and/or distribute it,
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|
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|
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|
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|
||||
AC_SUBST([$1_TRUE])
|
||||
AC_SUBST([$1_FALSE])
|
||||
if $2; then
|
||||
$1_TRUE=
|
||||
$1_FALSE='#'
|
||||
else
|
||||
$1_TRUE='#'
|
||||
$1_FALSE=
|
||||
fi
|
||||
AC_CONFIG_COMMANDS_PRE(
|
||||
[if test -z "${$1_TRUE}" && test -z "${$1_FALSE}"; then
|
||||
AC_MSG_ERROR([[conditional "$1" was never defined.
|
||||
Usually this means the macro was only invoked conditionally.]])
|
||||
fi])])
|
||||
|
||||
|
||||
# Copyright (C) 1999, 2000, 2001, 2002, 2003, 2004, 2005
|
||||
# Free Software Foundation, Inc.
|
||||
#
|
||||
# This file is free software; the Free Software Foundation
|
||||
# gives unlimited permission to copy and/or distribute it,
|
||||
# with or without modifications, as long as this notice is preserved.
|
||||
|
||||
# serial 8
|
||||
|
||||
# There are a few dirty hacks below to avoid letting `AC_PROG_CC' be
|
||||
# written in clear, in which case automake, when reading aclocal.m4,
|
||||
# will think it sees a *use*, and therefore will trigger all it's
|
||||
# C support machinery. Also note that it means that autoscan, seeing
|
||||
# CC etc. in the Makefile, will ask for an AC_PROG_CC use...
|
||||
|
||||
|
||||
# _AM_DEPENDENCIES(NAME)
|
||||
# ----------------------
|
||||
# See how the compiler implements dependency checking.
|
||||
# NAME is "CC", "CXX", "GCJ", or "OBJC".
|
||||
# We try a few techniques and use that to set a single cache variable.
|
||||
#
|
||||
# We don't AC_REQUIRE the corresponding AC_PROG_CC since the latter was
|
||||
# modified to invoke _AM_DEPENDENCIES(CC); we would have a circular
|
||||
# dependency, and given that the user is not expected to run this macro,
|
||||
# just rely on AC_PROG_CC.
|
||||
AC_DEFUN([_AM_DEPENDENCIES],
|
||||
[AC_REQUIRE([AM_SET_DEPDIR])dnl
|
||||
AC_REQUIRE([AM_OUTPUT_DEPENDENCY_COMMANDS])dnl
|
||||
AC_REQUIRE([AM_MAKE_INCLUDE])dnl
|
||||
AC_REQUIRE([AM_DEP_TRACK])dnl
|
||||
|
||||
ifelse([$1], CC, [depcc="$CC" am_compiler_list=],
|
||||
[$1], CXX, [depcc="$CXX" am_compiler_list=],
|
||||
[$1], OBJC, [depcc="$OBJC" am_compiler_list='gcc3 gcc'],
|
||||
[$1], GCJ, [depcc="$GCJ" am_compiler_list='gcc3 gcc'],
|
||||
[depcc="$$1" am_compiler_list=])
|
||||
|
||||
AC_CACHE_CHECK([dependency style of $depcc],
|
||||
[am_cv_$1_dependencies_compiler_type],
|
||||
[if test -z "$AMDEP_TRUE" && test -f "$am_depcomp"; then
|
||||
# We make a subdir and do the tests there. Otherwise we can end up
|
||||
# making bogus files that we don't know about and never remove. For
|
||||
# instance it was reported that on HP-UX the gcc test will end up
|
||||
# making a dummy file named `D' -- because `-MD' means `put the output
|
||||
# in D'.
|
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mkdir conftest.dir
|
||||
# Copy depcomp to subdir because otherwise we won't find it if we're
|
||||
# using a relative directory.
|
||||
cp "$am_depcomp" conftest.dir
|
||||
cd conftest.dir
|
||||
# We will build objects and dependencies in a subdirectory because
|
||||
# it helps to detect inapplicable dependency modes. For instance
|
||||
# both Tru64's cc and ICC support -MD to output dependencies as a
|
||||
# side effect of compilation, but ICC will put the dependencies in
|
||||
# the current directory while Tru64 will put them in the object
|
||||
# directory.
|
||||
mkdir sub
|
||||
|
||||
am_cv_$1_dependencies_compiler_type=none
|
||||
if test "$am_compiler_list" = ""; then
|
||||
am_compiler_list=`sed -n ['s/^#*\([a-zA-Z0-9]*\))$/\1/p'] < ./depcomp`
|
||||
fi
|
||||
for depmode in $am_compiler_list; do
|
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# Setup a source with many dependencies, because some compilers
|
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# like to wrap large dependency lists on column 80 (with \), and
|
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# we should not choose a depcomp mode which is confused by this.
|
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#
|
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# We need to recreate these files for each test, as the compiler may
|
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# overwrite some of them when testing with obscure command lines.
|
||||
# This happens at least with the AIX C compiler.
|
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: > sub/conftest.c
|
||||
for i in 1 2 3 4 5 6; do
|
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echo '#include "conftst'$i'.h"' >> sub/conftest.c
|
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# Using `: > sub/conftst$i.h' creates only sub/conftst1.h with
|
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# Solaris 8's {/usr,}/bin/sh.
|
||||
touch sub/conftst$i.h
|
||||
done
|
||||
echo "${am__include} ${am__quote}sub/conftest.Po${am__quote}" > confmf
|
||||
|
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case $depmode in
|
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nosideeffect)
|
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# after this tag, mechanisms are not by side-effect, so they'll
|
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# only be used when explicitly requested
|
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if test "x$enable_dependency_tracking" = xyes; then
|
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continue
|
||||
else
|
||||
break
|
||||
fi
|
||||
;;
|
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none) break ;;
|
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esac
|
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# We check with `-c' and `-o' for the sake of the "dashmstdout"
|
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# mode. It turns out that the SunPro C++ compiler does not properly
|
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# handle `-M -o', and we need to detect this.
|
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if depmode=$depmode \
|
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source=sub/conftest.c object=sub/conftest.${OBJEXT-o} \
|
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depfile=sub/conftest.Po tmpdepfile=sub/conftest.TPo \
|
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$SHELL ./depcomp $depcc -c -o sub/conftest.${OBJEXT-o} sub/conftest.c \
|
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>/dev/null 2>conftest.err &&
|
||||
grep sub/conftst6.h sub/conftest.Po > /dev/null 2>&1 &&
|
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grep sub/conftest.${OBJEXT-o} sub/conftest.Po > /dev/null 2>&1 &&
|
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${MAKE-make} -s -f confmf > /dev/null 2>&1; then
|
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# icc doesn't choke on unknown options, it will just issue warnings
|
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# or remarks (even with -Werror). So we grep stderr for any message
|
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# that says an option was ignored or not supported.
|
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# When given -MP, icc 7.0 and 7.1 complain thusly:
|
||||
# icc: Command line warning: ignoring option '-M'; no argument required
|
||||
# The diagnosis changed in icc 8.0:
|
||||
# icc: Command line remark: option '-MP' not supported
|
||||
if (grep 'ignoring option' conftest.err ||
|
||||
grep 'not supported' conftest.err) >/dev/null 2>&1; then :; else
|
||||
am_cv_$1_dependencies_compiler_type=$depmode
|
||||
break
|
||||
fi
|
||||
fi
|
||||
done
|
||||
|
||||
cd ..
|
||||
rm -rf conftest.dir
|
||||
else
|
||||
am_cv_$1_dependencies_compiler_type=none
|
||||
fi
|
||||
])
|
||||
AC_SUBST([$1DEPMODE], [depmode=$am_cv_$1_dependencies_compiler_type])
|
||||
AM_CONDITIONAL([am__fastdep$1], [
|
||||
test "x$enable_dependency_tracking" != xno \
|
||||
&& test "$am_cv_$1_dependencies_compiler_type" = gcc3])
|
||||
])
|
||||
|
||||
|
||||
# AM_SET_DEPDIR
|
||||
# -------------
|
||||
# Choose a directory name for dependency files.
|
||||
# This macro is AC_REQUIREd in _AM_DEPENDENCIES
|
||||
AC_DEFUN([AM_SET_DEPDIR],
|
||||
[AC_REQUIRE([AM_SET_LEADING_DOT])dnl
|
||||
AC_SUBST([DEPDIR], ["${am__leading_dot}deps"])dnl
|
||||
])
|
||||
|
||||
|
||||
# AM_DEP_TRACK
|
||||
# ------------
|
||||
AC_DEFUN([AM_DEP_TRACK],
|
||||
[AC_ARG_ENABLE(dependency-tracking,
|
||||
[ --disable-dependency-tracking speeds up one-time build
|
||||
--enable-dependency-tracking do not reject slow dependency extractors])
|
||||
if test "x$enable_dependency_tracking" != xno; then
|
||||
am_depcomp="$ac_aux_dir/depcomp"
|
||||
AMDEPBACKSLASH='\'
|
||||
fi
|
||||
AM_CONDITIONAL([AMDEP], [test "x$enable_dependency_tracking" != xno])
|
||||
AC_SUBST([AMDEPBACKSLASH])
|
||||
])
|
||||
|
||||
# Generate code to set up dependency tracking. -*- Autoconf -*-
|
||||
|
||||
# Copyright (C) 1999, 2000, 2001, 2002, 2003, 2004, 2005
|
||||
# Free Software Foundation, Inc.
|
||||
#
|
||||
# This file is free software; the Free Software Foundation
|
||||
# gives unlimited permission to copy and/or distribute it,
|
||||
# with or without modifications, as long as this notice is preserved.
|
||||
|
||||
#serial 3
|
||||
|
||||
# _AM_OUTPUT_DEPENDENCY_COMMANDS
|
||||
# ------------------------------
|
||||
AC_DEFUN([_AM_OUTPUT_DEPENDENCY_COMMANDS],
|
||||
[for mf in $CONFIG_FILES; do
|
||||
# Strip MF so we end up with the name of the file.
|
||||
mf=`echo "$mf" | sed -e 's/:.*$//'`
|
||||
# Check whether this is an Automake generated Makefile or not.
|
||||
# We used to match only the files named `Makefile.in', but
|
||||
# some people rename them; so instead we look at the file content.
|
||||
# Grep'ing the first line is not enough: some people post-process
|
||||
# each Makefile.in and add a new line on top of each file to say so.
|
||||
# So let's grep whole file.
|
||||
if grep '^#.*generated by automake' $mf > /dev/null 2>&1; then
|
||||
dirpart=`AS_DIRNAME("$mf")`
|
||||
else
|
||||
continue
|
||||
fi
|
||||
# Extract the definition of DEPDIR, am__include, and am__quote
|
||||
# from the Makefile without running `make'.
|
||||
DEPDIR=`sed -n 's/^DEPDIR = //p' < "$mf"`
|
||||
test -z "$DEPDIR" && continue
|
||||
am__include=`sed -n 's/^am__include = //p' < "$mf"`
|
||||
test -z "am__include" && continue
|
||||
am__quote=`sed -n 's/^am__quote = //p' < "$mf"`
|
||||
# When using ansi2knr, U may be empty or an underscore; expand it
|
||||
U=`sed -n 's/^U = //p' < "$mf"`
|
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# Find all dependency output files, they are included files with
|
||||
# $(DEPDIR) in their names. We invoke sed twice because it is the
|
||||
# simplest approach to changing $(DEPDIR) to its actual value in the
|
||||
# expansion.
|
||||
for file in `sed -n "
|
||||
s/^$am__include $am__quote\(.*(DEPDIR).*\)$am__quote"'$/\1/p' <"$mf" | \
|
||||
sed -e 's/\$(DEPDIR)/'"$DEPDIR"'/g' -e 's/\$U/'"$U"'/g'`; do
|
||||
# Make sure the directory exists.
|
||||
test -f "$dirpart/$file" && continue
|
||||
fdir=`AS_DIRNAME(["$file"])`
|
||||
AS_MKDIR_P([$dirpart/$fdir])
|
||||
# echo "creating $dirpart/$file"
|
||||
echo '# dummy' > "$dirpart/$file"
|
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done
|
||||
done
|
||||
])# _AM_OUTPUT_DEPENDENCY_COMMANDS
|
||||
|
||||
|
||||
# AM_OUTPUT_DEPENDENCY_COMMANDS
|
||||
# -----------------------------
|
||||
# This macro should only be invoked once -- use via AC_REQUIRE.
|
||||
#
|
||||
# This code is only required when automatic dependency tracking
|
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# is enabled. FIXME. This creates each `.P' file that we will
|
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# need in order to bootstrap the dependency handling code.
|
||||
AC_DEFUN([AM_OUTPUT_DEPENDENCY_COMMANDS],
|
||||
[AC_CONFIG_COMMANDS([depfiles],
|
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[test x"$AMDEP_TRUE" != x"" || _AM_OUTPUT_DEPENDENCY_COMMANDS],
|
||||
[AMDEP_TRUE="$AMDEP_TRUE" ac_aux_dir="$ac_aux_dir"])
|
||||
])
|
||||
|
||||
# Do all the work for Automake. -*- Autoconf -*-
|
||||
|
||||
# Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003, 2004, 2005
|
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# Free Software Foundation, Inc.
|
||||
#
|
||||
# This file is free software; the Free Software Foundation
|
||||
# gives unlimited permission to copy and/or distribute it,
|
||||
# with or without modifications, as long as this notice is preserved.
|
||||
|
||||
# serial 12
|
||||
|
||||
# This macro actually does too much. Some checks are only needed if
|
||||
# your package does certain things. But this isn't really a big deal.
|
||||
|
||||
# AM_INIT_AUTOMAKE(PACKAGE, VERSION, [NO-DEFINE])
|
||||
# AM_INIT_AUTOMAKE([OPTIONS])
|
||||
# -----------------------------------------------
|
||||
# The call with PACKAGE and VERSION arguments is the old style
|
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# call (pre autoconf-2.50), which is being phased out. PACKAGE
|
||||
# and VERSION should now be passed to AC_INIT and removed from
|
||||
# the call to AM_INIT_AUTOMAKE.
|
||||
# We support both call styles for the transition. After
|
||||
# the next Automake release, Autoconf can make the AC_INIT
|
||||
# arguments mandatory, and then we can depend on a new Autoconf
|
||||
# release and drop the old call support.
|
||||
AC_DEFUN([AM_INIT_AUTOMAKE],
|
||||
[AC_PREREQ([2.58])dnl
|
||||
dnl Autoconf wants to disallow AM_ names. We explicitly allow
|
||||
dnl the ones we care about.
|
||||
m4_pattern_allow([^AM_[A-Z]+FLAGS$])dnl
|
||||
AC_REQUIRE([AM_SET_CURRENT_AUTOMAKE_VERSION])dnl
|
||||
AC_REQUIRE([AC_PROG_INSTALL])dnl
|
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# test to see if srcdir already configured
|
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if test "`cd $srcdir && pwd`" != "`pwd`" &&
|
||||
test -f $srcdir/config.status; then
|
||||
AC_MSG_ERROR([source directory already configured; run "make distclean" there first])
|
||||
fi
|
||||
|
||||
# test whether we have cygpath
|
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if test -z "$CYGPATH_W"; then
|
||||
if (cygpath --version) >/dev/null 2>/dev/null; then
|
||||
CYGPATH_W='cygpath -w'
|
||||
else
|
||||
CYGPATH_W=echo
|
||||
fi
|
||||
fi
|
||||
AC_SUBST([CYGPATH_W])
|
||||
|
||||
# Define the identity of the package.
|
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dnl Distinguish between old-style and new-style calls.
|
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m4_ifval([$2],
|
||||
[m4_ifval([$3], [_AM_SET_OPTION([no-define])])dnl
|
||||
AC_SUBST([PACKAGE], [$1])dnl
|
||||
AC_SUBST([VERSION], [$2])],
|
||||
[_AM_SET_OPTIONS([$1])dnl
|
||||
AC_SUBST([PACKAGE], ['AC_PACKAGE_TARNAME'])dnl
|
||||
AC_SUBST([VERSION], ['AC_PACKAGE_VERSION'])])dnl
|
||||
|
||||
_AM_IF_OPTION([no-define],,
|
||||
[AC_DEFINE_UNQUOTED(PACKAGE, "$PACKAGE", [Name of package])
|
||||
AC_DEFINE_UNQUOTED(VERSION, "$VERSION", [Version number of package])])dnl
|
||||
|
||||
# Some tools Automake needs.
|
||||
AC_REQUIRE([AM_SANITY_CHECK])dnl
|
||||
AC_REQUIRE([AC_ARG_PROGRAM])dnl
|
||||
AM_MISSING_PROG(ACLOCAL, aclocal-${am__api_version})
|
||||
AM_MISSING_PROG(AUTOCONF, autoconf)
|
||||
AM_MISSING_PROG(AUTOMAKE, automake-${am__api_version})
|
||||
AM_MISSING_PROG(AUTOHEADER, autoheader)
|
||||
AM_MISSING_PROG(MAKEINFO, makeinfo)
|
||||
AM_PROG_INSTALL_SH
|
||||
AM_PROG_INSTALL_STRIP
|
||||
AC_REQUIRE([AM_PROG_MKDIR_P])dnl
|
||||
# We need awk for the "check" target. The system "awk" is bad on
|
||||
# some platforms.
|
||||
AC_REQUIRE([AC_PROG_AWK])dnl
|
||||
AC_REQUIRE([AC_PROG_MAKE_SET])dnl
|
||||
AC_REQUIRE([AM_SET_LEADING_DOT])dnl
|
||||
_AM_IF_OPTION([tar-ustar], [_AM_PROG_TAR([ustar])],
|
||||
[_AM_IF_OPTION([tar-pax], [_AM_PROG_TAR([pax])],
|
||||
[_AM_PROG_TAR([v7])])])
|
||||
_AM_IF_OPTION([no-dependencies],,
|
||||
[AC_PROVIDE_IFELSE([AC_PROG_CC],
|
||||
[_AM_DEPENDENCIES(CC)],
|
||||
[define([AC_PROG_CC],
|
||||
defn([AC_PROG_CC])[_AM_DEPENDENCIES(CC)])])dnl
|
||||
AC_PROVIDE_IFELSE([AC_PROG_CXX],
|
||||
[_AM_DEPENDENCIES(CXX)],
|
||||
[define([AC_PROG_CXX],
|
||||
defn([AC_PROG_CXX])[_AM_DEPENDENCIES(CXX)])])dnl
|
||||
])
|
||||
])
|
||||
|
||||
|
||||
# When config.status generates a header, we must update the stamp-h file.
|
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# This file resides in the same directory as the config header
|
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# that is generated. The stamp files are numbered to have different names.
|
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|
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# Autoconf calls _AC_AM_CONFIG_HEADER_HOOK (when defined) in the
|
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# loop where config.status creates the headers, so we can generate
|
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# our stamp files there.
|
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AC_DEFUN([_AC_AM_CONFIG_HEADER_HOOK],
|
||||
[# Compute $1's index in $config_headers.
|
||||
_am_stamp_count=1
|
||||
for _am_header in $config_headers :; do
|
||||
case $_am_header in
|
||||
$1 | $1:* )
|
||||
break ;;
|
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* )
|
||||
_am_stamp_count=`expr $_am_stamp_count + 1` ;;
|
||||
esac
|
||||
done
|
||||
echo "timestamp for $1" >`AS_DIRNAME([$1])`/stamp-h[]$_am_stamp_count])
|
||||
|
||||
# Copyright (C) 2001, 2003, 2005 Free Software Foundation, Inc.
|
||||
#
|
||||
# This file is free software; the Free Software Foundation
|
||||
# gives unlimited permission to copy and/or distribute it,
|
||||
# with or without modifications, as long as this notice is preserved.
|
||||
|
||||
# AM_PROG_INSTALL_SH
|
||||
# ------------------
|
||||
# Define $install_sh.
|
||||
AC_DEFUN([AM_PROG_INSTALL_SH],
|
||||
[AC_REQUIRE([AM_AUX_DIR_EXPAND])dnl
|
||||
install_sh=${install_sh-"$am_aux_dir/install-sh"}
|
||||
AC_SUBST(install_sh)])
|
||||
|
||||
# Copyright (C) 2003, 2005 Free Software Foundation, Inc.
|
||||
#
|
||||
# This file is free software; the Free Software Foundation
|
||||
# gives unlimited permission to copy and/or distribute it,
|
||||
# with or without modifications, as long as this notice is preserved.
|
||||
|
||||
# serial 2
|
||||
|
||||
# Check whether the underlying file-system supports filenames
|
||||
# with a leading dot. For instance MS-DOS doesn't.
|
||||
AC_DEFUN([AM_SET_LEADING_DOT],
|
||||
[rm -rf .tst 2>/dev/null
|
||||
mkdir .tst 2>/dev/null
|
||||
if test -d .tst; then
|
||||
am__leading_dot=.
|
||||
else
|
||||
am__leading_dot=_
|
||||
fi
|
||||
rmdir .tst 2>/dev/null
|
||||
AC_SUBST([am__leading_dot])])
|
||||
|
||||
# Check to see how 'make' treats includes. -*- Autoconf -*-
|
||||
|
||||
# Copyright (C) 2001, 2002, 2003, 2005 Free Software Foundation, Inc.
|
||||
#
|
||||
# This file is free software; the Free Software Foundation
|
||||
# gives unlimited permission to copy and/or distribute it,
|
||||
# with or without modifications, as long as this notice is preserved.
|
||||
|
||||
# serial 3
|
||||
|
||||
# AM_MAKE_INCLUDE()
|
||||
# -----------------
|
||||
# Check to see how make treats includes.
|
||||
AC_DEFUN([AM_MAKE_INCLUDE],
|
||||
[am_make=${MAKE-make}
|
||||
cat > confinc << 'END'
|
||||
am__doit:
|
||||
@echo done
|
||||
.PHONY: am__doit
|
||||
END
|
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# If we don't find an include directive, just comment out the code.
|
||||
AC_MSG_CHECKING([for style of include used by $am_make])
|
||||
am__include="#"
|
||||
am__quote=
|
||||
_am_result=none
|
||||
# First try GNU make style include.
|
||||
echo "include confinc" > confmf
|
||||
# We grep out `Entering directory' and `Leaving directory'
|
||||
# messages which can occur if `w' ends up in MAKEFLAGS.
|
||||
# In particular we don't look at `^make:' because GNU make might
|
||||
# be invoked under some other name (usually "gmake"), in which
|
||||
# case it prints its new name instead of `make'.
|
||||
if test "`$am_make -s -f confmf 2> /dev/null | grep -v 'ing directory'`" = "done"; then
|
||||
am__include=include
|
||||
am__quote=
|
||||
_am_result=GNU
|
||||
fi
|
||||
# Now try BSD make style include.
|
||||
if test "$am__include" = "#"; then
|
||||
echo '.include "confinc"' > confmf
|
||||
if test "`$am_make -s -f confmf 2> /dev/null`" = "done"; then
|
||||
am__include=.include
|
||||
am__quote="\""
|
||||
_am_result=BSD
|
||||
fi
|
||||
fi
|
||||
AC_SUBST([am__include])
|
||||
AC_SUBST([am__quote])
|
||||
AC_MSG_RESULT([$_am_result])
|
||||
rm -f confinc confmf
|
||||
])
|
||||
|
||||
# Fake the existence of programs that GNU maintainers use. -*- Autoconf -*-
|
||||
|
||||
# Copyright (C) 1997, 1999, 2000, 2001, 2003, 2005
|
||||
# Free Software Foundation, Inc.
|
||||
#
|
||||
# This file is free software; the Free Software Foundation
|
||||
# gives unlimited permission to copy and/or distribute it,
|
||||
# with or without modifications, as long as this notice is preserved.
|
||||
|
||||
# serial 4
|
||||
|
||||
# AM_MISSING_PROG(NAME, PROGRAM)
|
||||
# ------------------------------
|
||||
AC_DEFUN([AM_MISSING_PROG],
|
||||
[AC_REQUIRE([AM_MISSING_HAS_RUN])
|
||||
$1=${$1-"${am_missing_run}$2"}
|
||||
AC_SUBST($1)])
|
||||
|
||||
|
||||
# AM_MISSING_HAS_RUN
|
||||
# ------------------
|
||||
# Define MISSING if not defined so far and test if it supports --run.
|
||||
# If it does, set am_missing_run to use it, otherwise, to nothing.
|
||||
AC_DEFUN([AM_MISSING_HAS_RUN],
|
||||
[AC_REQUIRE([AM_AUX_DIR_EXPAND])dnl
|
||||
test x"${MISSING+set}" = xset || MISSING="\${SHELL} $am_aux_dir/missing"
|
||||
# Use eval to expand $SHELL
|
||||
if eval "$MISSING --run true"; then
|
||||
am_missing_run="$MISSING --run "
|
||||
else
|
||||
am_missing_run=
|
||||
AC_MSG_WARN([`missing' script is too old or missing])
|
||||
fi
|
||||
])
|
||||
|
||||
# Copyright (C) 2003, 2004, 2005 Free Software Foundation, Inc.
|
||||
#
|
||||
# This file is free software; the Free Software Foundation
|
||||
# gives unlimited permission to copy and/or distribute it,
|
||||
# with or without modifications, as long as this notice is preserved.
|
||||
|
||||
# AM_PROG_MKDIR_P
|
||||
# ---------------
|
||||
# Check whether `mkdir -p' is supported, fallback to mkinstalldirs otherwise.
|
||||
#
|
||||
# Automake 1.8 used `mkdir -m 0755 -p --' to ensure that directories
|
||||
# created by `make install' are always world readable, even if the
|
||||
# installer happens to have an overly restrictive umask (e.g. 077).
|
||||
# This was a mistake. There are at least two reasons why we must not
|
||||
# use `-m 0755':
|
||||
# - it causes special bits like SGID to be ignored,
|
||||
# - it may be too restrictive (some setups expect 775 directories).
|
||||
#
|
||||
# Do not use -m 0755 and let people choose whatever they expect by
|
||||
# setting umask.
|
||||
#
|
||||
# We cannot accept any implementation of `mkdir' that recognizes `-p'.
|
||||
# Some implementations (such as Solaris 8's) are not thread-safe: if a
|
||||
# parallel make tries to run `mkdir -p a/b' and `mkdir -p a/c'
|
||||
# concurrently, both version can detect that a/ is missing, but only
|
||||
# one can create it and the other will error out. Consequently we
|
||||
# restrict ourselves to GNU make (using the --version option ensures
|
||||
# this.)
|
||||
AC_DEFUN([AM_PROG_MKDIR_P],
|
||||
[if mkdir -p --version . >/dev/null 2>&1 && test ! -d ./--version; then
|
||||
# We used to keeping the `.' as first argument, in order to
|
||||
# allow $(mkdir_p) to be used without argument. As in
|
||||
# $(mkdir_p) $(somedir)
|
||||
# where $(somedir) is conditionally defined. However this is wrong
|
||||
# for two reasons:
|
||||
# 1. if the package is installed by a user who cannot write `.'
|
||||
# make install will fail,
|
||||
# 2. the above comment should most certainly read
|
||||
# $(mkdir_p) $(DESTDIR)$(somedir)
|
||||
# so it does not work when $(somedir) is undefined and
|
||||
# $(DESTDIR) is not.
|
||||
# To support the latter case, we have to write
|
||||
# test -z "$(somedir)" || $(mkdir_p) $(DESTDIR)$(somedir),
|
||||
# so the `.' trick is pointless.
|
||||
mkdir_p='mkdir -p --'
|
||||
else
|
||||
# On NextStep and OpenStep, the `mkdir' command does not
|
||||
# recognize any option. It will interpret all options as
|
||||
# directories to create, and then abort because `.' already
|
||||
# exists.
|
||||
for d in ./-p ./--version;
|
||||
do
|
||||
test -d $d && rmdir $d
|
||||
done
|
||||
# $(mkinstalldirs) is defined by Automake if mkinstalldirs exists.
|
||||
if test -f "$ac_aux_dir/mkinstalldirs"; then
|
||||
mkdir_p='$(mkinstalldirs)'
|
||||
else
|
||||
mkdir_p='$(install_sh) -d'
|
||||
fi
|
||||
fi
|
||||
AC_SUBST([mkdir_p])])
|
||||
|
||||
# Helper functions for option handling. -*- Autoconf -*-
|
||||
|
||||
# Copyright (C) 2001, 2002, 2003, 2005 Free Software Foundation, Inc.
|
||||
#
|
||||
# This file is free software; the Free Software Foundation
|
||||
# gives unlimited permission to copy and/or distribute it,
|
||||
# with or without modifications, as long as this notice is preserved.
|
||||
|
||||
# serial 3
|
||||
|
||||
# _AM_MANGLE_OPTION(NAME)
|
||||
# -----------------------
|
||||
AC_DEFUN([_AM_MANGLE_OPTION],
|
||||
[[_AM_OPTION_]m4_bpatsubst($1, [[^a-zA-Z0-9_]], [_])])
|
||||
|
||||
# _AM_SET_OPTION(NAME)
|
||||
# ------------------------------
|
||||
# Set option NAME. Presently that only means defining a flag for this option.
|
||||
AC_DEFUN([_AM_SET_OPTION],
|
||||
[m4_define(_AM_MANGLE_OPTION([$1]), 1)])
|
||||
|
||||
# _AM_SET_OPTIONS(OPTIONS)
|
||||
# ----------------------------------
|
||||
# OPTIONS is a space-separated list of Automake options.
|
||||
AC_DEFUN([_AM_SET_OPTIONS],
|
||||
[AC_FOREACH([_AM_Option], [$1], [_AM_SET_OPTION(_AM_Option)])])
|
||||
|
||||
# _AM_IF_OPTION(OPTION, IF-SET, [IF-NOT-SET])
|
||||
# -------------------------------------------
|
||||
# Execute IF-SET if OPTION is set, IF-NOT-SET otherwise.
|
||||
AC_DEFUN([_AM_IF_OPTION],
|
||||
[m4_ifset(_AM_MANGLE_OPTION([$1]), [$2], [$3])])
|
||||
|
||||
# Check to make sure that the build environment is sane. -*- Autoconf -*-
|
||||
|
||||
# Copyright (C) 1996, 1997, 2000, 2001, 2003, 2005
|
||||
# Free Software Foundation, Inc.
|
||||
#
|
||||
# This file is free software; the Free Software Foundation
|
||||
# gives unlimited permission to copy and/or distribute it,
|
||||
# with or without modifications, as long as this notice is preserved.
|
||||
|
||||
# serial 4
|
||||
|
||||
# AM_SANITY_CHECK
|
||||
# ---------------
|
||||
AC_DEFUN([AM_SANITY_CHECK],
|
||||
[AC_MSG_CHECKING([whether build environment is sane])
|
||||
# Just in case
|
||||
sleep 1
|
||||
echo timestamp > conftest.file
|
||||
# Do `set' in a subshell so we don't clobber the current shell's
|
||||
# arguments. Must try -L first in case configure is actually a
|
||||
# symlink; some systems play weird games with the mod time of symlinks
|
||||
# (eg FreeBSD returns the mod time of the symlink's containing
|
||||
# directory).
|
||||
if (
|
||||
set X `ls -Lt $srcdir/configure conftest.file 2> /dev/null`
|
||||
if test "$[*]" = "X"; then
|
||||
# -L didn't work.
|
||||
set X `ls -t $srcdir/configure conftest.file`
|
||||
fi
|
||||
rm -f conftest.file
|
||||
if test "$[*]" != "X $srcdir/configure conftest.file" \
|
||||
&& test "$[*]" != "X conftest.file $srcdir/configure"; then
|
||||
|
||||
# If neither matched, then we have a broken ls. This can happen
|
||||
# if, for instance, CONFIG_SHELL is bash and it inherits a
|
||||
# broken ls alias from the environment. This has actually
|
||||
# happened. Such a system could not be considered "sane".
|
||||
AC_MSG_ERROR([ls -t appears to fail. Make sure there is not a broken
|
||||
alias in your environment])
|
||||
fi
|
||||
|
||||
test "$[2]" = conftest.file
|
||||
)
|
||||
then
|
||||
# Ok.
|
||||
:
|
||||
else
|
||||
AC_MSG_ERROR([newly created file is older than distributed files!
|
||||
Check your system clock])
|
||||
fi
|
||||
AC_MSG_RESULT(yes)])
|
||||
|
||||
# Copyright (C) 2001, 2003, 2005 Free Software Foundation, Inc.
|
||||
#
|
||||
# This file is free software; the Free Software Foundation
|
||||
# gives unlimited permission to copy and/or distribute it,
|
||||
# with or without modifications, as long as this notice is preserved.
|
||||
|
||||
# AM_PROG_INSTALL_STRIP
|
||||
# ---------------------
|
||||
# One issue with vendor `install' (even GNU) is that you can't
|
||||
# specify the program used to strip binaries. This is especially
|
||||
# annoying in cross-compiling environments, where the build's strip
|
||||
# is unlikely to handle the host's binaries.
|
||||
# Fortunately install-sh will honor a STRIPPROG variable, so we
|
||||
# always use install-sh in `make install-strip', and initialize
|
||||
# STRIPPROG with the value of the STRIP variable (set by the user).
|
||||
AC_DEFUN([AM_PROG_INSTALL_STRIP],
|
||||
[AC_REQUIRE([AM_PROG_INSTALL_SH])dnl
|
||||
# Installed binaries are usually stripped using `strip' when the user
|
||||
# run `make install-strip'. However `strip' might not be the right
|
||||
# tool to use in cross-compilation environments, therefore Automake
|
||||
# will honor the `STRIP' environment variable to overrule this program.
|
||||
dnl Don't test for $cross_compiling = yes, because it might be `maybe'.
|
||||
if test "$cross_compiling" != no; then
|
||||
AC_CHECK_TOOL([STRIP], [strip], :)
|
||||
fi
|
||||
INSTALL_STRIP_PROGRAM="\${SHELL} \$(install_sh) -c -s"
|
||||
AC_SUBST([INSTALL_STRIP_PROGRAM])])
|
||||
|
||||
# Check how to create a tarball. -*- Autoconf -*-
|
||||
|
||||
# Copyright (C) 2004, 2005 Free Software Foundation, Inc.
|
||||
#
|
||||
# This file is free software; the Free Software Foundation
|
||||
# gives unlimited permission to copy and/or distribute it,
|
||||
# with or without modifications, as long as this notice is preserved.
|
||||
|
||||
# serial 2
|
||||
|
||||
# _AM_PROG_TAR(FORMAT)
|
||||
# --------------------
|
||||
# Check how to create a tarball in format FORMAT.
|
||||
# FORMAT should be one of `v7', `ustar', or `pax'.
|
||||
#
|
||||
# Substitute a variable $(am__tar) that is a command
|
||||
# writing to stdout a FORMAT-tarball containing the directory
|
||||
# $tardir.
|
||||
# tardir=directory && $(am__tar) > result.tar
|
||||
#
|
||||
# Substitute a variable $(am__untar) that extract such
|
||||
# a tarball read from stdin.
|
||||
# $(am__untar) < result.tar
|
||||
AC_DEFUN([_AM_PROG_TAR],
|
||||
[# Always define AMTAR for backward compatibility.
|
||||
AM_MISSING_PROG([AMTAR], [tar])
|
||||
m4_if([$1], [v7],
|
||||
[am__tar='${AMTAR} chof - "$$tardir"'; am__untar='${AMTAR} xf -'],
|
||||
[m4_case([$1], [ustar],, [pax],,
|
||||
[m4_fatal([Unknown tar format])])
|
||||
AC_MSG_CHECKING([how to create a $1 tar archive])
|
||||
# Loop over all known methods to create a tar archive until one works.
|
||||
_am_tools='gnutar m4_if([$1], [ustar], [plaintar]) pax cpio none'
|
||||
_am_tools=${am_cv_prog_tar_$1-$_am_tools}
|
||||
# Do not fold the above two line into one, because Tru64 sh and
|
||||
# Solaris sh will not grok spaces in the rhs of `-'.
|
||||
for _am_tool in $_am_tools
|
||||
do
|
||||
case $_am_tool in
|
||||
gnutar)
|
||||
for _am_tar in tar gnutar gtar;
|
||||
do
|
||||
AM_RUN_LOG([$_am_tar --version]) && break
|
||||
done
|
||||
am__tar="$_am_tar --format=m4_if([$1], [pax], [posix], [$1]) -chf - "'"$$tardir"'
|
||||
am__tar_="$_am_tar --format=m4_if([$1], [pax], [posix], [$1]) -chf - "'"$tardir"'
|
||||
am__untar="$_am_tar -xf -"
|
||||
;;
|
||||
plaintar)
|
||||
# Must skip GNU tar: if it does not support --format= it doesn't create
|
||||
# ustar tarball either.
|
||||
(tar --version) >/dev/null 2>&1 && continue
|
||||
am__tar='tar chf - "$$tardir"'
|
||||
am__tar_='tar chf - "$tardir"'
|
||||
am__untar='tar xf -'
|
||||
;;
|
||||
pax)
|
||||
am__tar='pax -L -x $1 -w "$$tardir"'
|
||||
am__tar_='pax -L -x $1 -w "$tardir"'
|
||||
am__untar='pax -r'
|
||||
;;
|
||||
cpio)
|
||||
am__tar='find "$$tardir" -print | cpio -o -H $1 -L'
|
||||
am__tar_='find "$tardir" -print | cpio -o -H $1 -L'
|
||||
am__untar='cpio -i -H $1 -d'
|
||||
;;
|
||||
none)
|
||||
am__tar=false
|
||||
am__tar_=false
|
||||
am__untar=false
|
||||
;;
|
||||
esac
|
||||
|
||||
# If the value was cached, stop now. We just wanted to have am__tar
|
||||
# and am__untar set.
|
||||
test -n "${am_cv_prog_tar_$1}" && break
|
||||
|
||||
# tar/untar a dummy directory, and stop if the command works
|
||||
rm -rf conftest.dir
|
||||
mkdir conftest.dir
|
||||
echo GrepMe > conftest.dir/file
|
||||
AM_RUN_LOG([tardir=conftest.dir && eval $am__tar_ >conftest.tar])
|
||||
rm -rf conftest.dir
|
||||
if test -s conftest.tar; then
|
||||
AM_RUN_LOG([$am__untar <conftest.tar])
|
||||
grep GrepMe conftest.dir/file >/dev/null 2>&1 && break
|
||||
fi
|
||||
done
|
||||
rm -rf conftest.dir
|
||||
|
||||
AC_CACHE_VAL([am_cv_prog_tar_$1], [am_cv_prog_tar_$1=$_am_tool])
|
||||
AC_MSG_RESULT([$am_cv_prog_tar_$1])])
|
||||
AC_SUBST([am__tar])
|
||||
AC_SUBST([am__untar])
|
||||
]) # _AM_PROG_TAR
|
||||
|
||||
+24
-26
@@ -1,48 +1,46 @@
|
||||
#!/bin/sh
|
||||
# Run this to generate all the initial makefiles, etc.
|
||||
|
||||
ACLOCAL_FLAGS="-I m4 -I . $ACLOCAL_FLAGS"
|
||||
LIBTOOLIZE_FLAGS="--force $LIBTOOLIZE_FLAGS"
|
||||
AUTOMAKE_FLAGS="--add-missing --copy --foreign $AUTOMAKE_FLAGS"
|
||||
|
||||
LIBTOOLIZE=`which libtoolize`
|
||||
if [ "$LIBTOOLIZE" = "" ]; then
|
||||
LIBTOOLIZE=`which glibtoolize`
|
||||
fi
|
||||
if [ "$LIBTOOLIZE" = "" ]; then
|
||||
echo "libtoolize not found" 1>&2
|
||||
exit 1
|
||||
fi
|
||||
|
||||
echo "+ making misc files ..."
|
||||
touch NEWS README AUTHORS ChangeLog
|
||||
echo
|
||||
$LIBTOOLIZE $LIBTOOLIZE_FLAGS || {
|
||||
echo "libtoolize failed"
|
||||
exit 1
|
||||
}
|
||||
echo
|
||||
echo
|
||||
echo "+ running aclocal ..."
|
||||
aclocal $ACLOCAL_FLAGS || {
|
||||
echo "aclocal failed - check that all needed development files are present on system"
|
||||
exit 1
|
||||
echo
|
||||
echo "aclocal failed - check that all needed development files are present on system"
|
||||
exit 1
|
||||
}
|
||||
echo
|
||||
echo
|
||||
echo
|
||||
echo
|
||||
echo "+ running autoheader ... "
|
||||
autoheader || {
|
||||
echo "autoheader failed"
|
||||
exit 1
|
||||
echo
|
||||
echo "autoheader failed"
|
||||
exit 1
|
||||
}
|
||||
echo
|
||||
echo
|
||||
echo
|
||||
echo "+ running autoconf ... "
|
||||
autoconf || {
|
||||
echo "autoconf failed"
|
||||
exit 1
|
||||
echo
|
||||
echo "autoconf failed"
|
||||
exit 1
|
||||
}
|
||||
echo
|
||||
echo
|
||||
echo
|
||||
echo "+ running automake ... "
|
||||
automake $AUTOMAKE_FLAGS || {
|
||||
echo "automake failed"
|
||||
exit 1
|
||||
automake -a -c --foreign || {
|
||||
echo
|
||||
echo "automake failed"
|
||||
exit 1
|
||||
}
|
||||
echo
|
||||
echo
|
||||
echo
|
||||
|
||||
|
||||
@@ -1,982 +0,0 @@
|
||||
# ===========================================================================
|
||||
# https://www.gnu.org/software/autoconf-archive/ax_cxx_compile_stdcxx.html
|
||||
# ===========================================================================
|
||||
#
|
||||
# SYNOPSIS
|
||||
#
|
||||
# AX_CXX_COMPILE_STDCXX(VERSION, [ext|noext], [mandatory|optional])
|
||||
#
|
||||
# DESCRIPTION
|
||||
#
|
||||
# Check for baseline language coverage in the compiler for the specified
|
||||
# version of the C++ standard. If necessary, add switches to CXX and
|
||||
# CXXCPP to enable support. VERSION may be '11' (for the C++11 standard)
|
||||
# or '14' (for the C++14 standard).
|
||||
#
|
||||
# The second argument, if specified, indicates whether you insist on an
|
||||
# extended mode (e.g. -std=gnu++11) or a strict conformance mode (e.g.
|
||||
# -std=c++11). If neither is specified, you get whatever works, with
|
||||
# preference for an extended mode.
|
||||
#
|
||||
# The third argument, if specified 'mandatory' or if left unspecified,
|
||||
# indicates that baseline support for the specified C++ standard is
|
||||
# required and that the macro should error out if no mode with that
|
||||
# support is found. If specified 'optional', then configuration proceeds
|
||||
# regardless, after defining HAVE_CXX${VERSION} if and only if a
|
||||
# supporting mode is found.
|
||||
#
|
||||
# LICENSE
|
||||
#
|
||||
# Copyright (c) 2008 Benjamin Kosnik <bkoz@redhat.com>
|
||||
# Copyright (c) 2012 Zack Weinberg <zackw@panix.com>
|
||||
# Copyright (c) 2013 Roy Stogner <roystgnr@ices.utexas.edu>
|
||||
# Copyright (c) 2014, 2015 Google Inc.; contributed by Alexey Sokolov <sokolov@google.com>
|
||||
# Copyright (c) 2015 Paul Norman <penorman@mac.com>
|
||||
# Copyright (c) 2015 Moritz Klammler <moritz@klammler.eu>
|
||||
# Copyright (c) 2016 Krzesimir Nowak <qdlacz@gmail.com>
|
||||
#
|
||||
# Copying and distribution of this file, with or without modification, are
|
||||
# permitted in any medium without royalty provided the copyright notice
|
||||
# and this notice are preserved. This file is offered as-is, without any
|
||||
# warranty.
|
||||
|
||||
#serial 7
|
||||
|
||||
dnl This macro is based on the code from the AX_CXX_COMPILE_STDCXX_11 macro
|
||||
dnl (serial version number 13).
|
||||
|
||||
AX_REQUIRE_DEFINED([AC_MSG_WARN])
|
||||
AC_DEFUN([AX_CXX_COMPILE_STDCXX], [dnl
|
||||
m4_if([$1], [11], [ax_cxx_compile_alternatives="11 0x"],
|
||||
[$1], [14], [ax_cxx_compile_alternatives="14 1y"],
|
||||
[$1], [17], [ax_cxx_compile_alternatives="17 1z"],
|
||||
[m4_fatal([invalid first argument `$1' to AX_CXX_COMPILE_STDCXX])])dnl
|
||||
m4_if([$2], [], [],
|
||||
[$2], [ext], [],
|
||||
[$2], [noext], [],
|
||||
[m4_fatal([invalid second argument `$2' to AX_CXX_COMPILE_STDCXX])])dnl
|
||||
m4_if([$3], [], [ax_cxx_compile_cxx$1_required=true],
|
||||
[$3], [mandatory], [ax_cxx_compile_cxx$1_required=true],
|
||||
[$3], [optional], [ax_cxx_compile_cxx$1_required=false],
|
||||
[m4_fatal([invalid third argument `$3' to AX_CXX_COMPILE_STDCXX])])
|
||||
AC_LANG_PUSH([C++])dnl
|
||||
ac_success=no
|
||||
AC_CACHE_CHECK(whether $CXX supports C++$1 features by default,
|
||||
ax_cv_cxx_compile_cxx$1,
|
||||
[AC_COMPILE_IFELSE([AC_LANG_SOURCE([_AX_CXX_COMPILE_STDCXX_testbody_$1])],
|
||||
[ax_cv_cxx_compile_cxx$1=yes],
|
||||
[ax_cv_cxx_compile_cxx$1=no])])
|
||||
if test x$ax_cv_cxx_compile_cxx$1 = xyes; then
|
||||
ac_success=yes
|
||||
fi
|
||||
|
||||
m4_if([$2], [noext], [], [dnl
|
||||
if test x$ac_success = xno; then
|
||||
for alternative in ${ax_cxx_compile_alternatives}; do
|
||||
switch="-std=gnu++${alternative}"
|
||||
cachevar=AS_TR_SH([ax_cv_cxx_compile_cxx$1_$switch])
|
||||
AC_CACHE_CHECK(whether $CXX supports C++$1 features with $switch,
|
||||
$cachevar,
|
||||
[ac_save_CXX="$CXX"
|
||||
CXX="$CXX $switch"
|
||||
AC_COMPILE_IFELSE([AC_LANG_SOURCE([_AX_CXX_COMPILE_STDCXX_testbody_$1])],
|
||||
[eval $cachevar=yes],
|
||||
[eval $cachevar=no])
|
||||
CXX="$ac_save_CXX"])
|
||||
if eval test x\$$cachevar = xyes; then
|
||||
CXX="$CXX $switch"
|
||||
if test -n "$CXXCPP" ; then
|
||||
CXXCPP="$CXXCPP $switch"
|
||||
fi
|
||||
ac_success=yes
|
||||
break
|
||||
fi
|
||||
done
|
||||
fi])
|
||||
|
||||
m4_if([$2], [ext], [], [dnl
|
||||
if test x$ac_success = xno; then
|
||||
dnl HP's aCC needs +std=c++11 according to:
|
||||
dnl http://h21007.www2.hp.com/portal/download/files/unprot/aCxx/PDF_Release_Notes/769149-001.pdf
|
||||
dnl Cray's crayCC needs "-h std=c++11"
|
||||
for alternative in ${ax_cxx_compile_alternatives}; do
|
||||
for switch in -std=c++${alternative} +std=c++${alternative} "-h std=c++${alternative}"; do
|
||||
cachevar=AS_TR_SH([ax_cv_cxx_compile_cxx$1_$switch])
|
||||
AC_CACHE_CHECK(whether $CXX supports C++$1 features with $switch,
|
||||
$cachevar,
|
||||
[ac_save_CXX="$CXX"
|
||||
CXX="$CXX $switch"
|
||||
AC_COMPILE_IFELSE([AC_LANG_SOURCE([_AX_CXX_COMPILE_STDCXX_testbody_$1])],
|
||||
[eval $cachevar=yes],
|
||||
[eval $cachevar=no])
|
||||
CXX="$ac_save_CXX"])
|
||||
if eval test x\$$cachevar = xyes; then
|
||||
CXX="$CXX $switch"
|
||||
if test -n "$CXXCPP" ; then
|
||||
CXXCPP="$CXXCPP $switch"
|
||||
fi
|
||||
ac_success=yes
|
||||
break
|
||||
fi
|
||||
done
|
||||
if test x$ac_success = xyes; then
|
||||
break
|
||||
fi
|
||||
done
|
||||
fi])
|
||||
AC_LANG_POP([C++])
|
||||
if test x$ax_cxx_compile_cxx$1_required = xtrue; then
|
||||
if test x$ac_success = xno; then
|
||||
AC_MSG_ERROR([*** A compiler with support for C++$1 language features is required.])
|
||||
fi
|
||||
fi
|
||||
if test x$ac_success = xno; then
|
||||
HAVE_CXX$1=0
|
||||
AC_MSG_NOTICE([No compiler with C++$1 support was found])
|
||||
else
|
||||
HAVE_CXX$1=1
|
||||
AC_DEFINE(HAVE_CXX$1,1,
|
||||
[define if the compiler supports basic C++$1 syntax])
|
||||
fi
|
||||
AC_SUBST(HAVE_CXX$1)
|
||||
m4_if([$1], [17], [AC_MSG_WARN([C++17 is not yet standardized, so the checks may change in incompatible ways anytime])])
|
||||
])
|
||||
|
||||
|
||||
dnl Test body for checking C++11 support
|
||||
|
||||
m4_define([_AX_CXX_COMPILE_STDCXX_testbody_11],
|
||||
_AX_CXX_COMPILE_STDCXX_testbody_new_in_11
|
||||
)
|
||||
|
||||
|
||||
dnl Test body for checking C++14 support
|
||||
|
||||
m4_define([_AX_CXX_COMPILE_STDCXX_testbody_14],
|
||||
_AX_CXX_COMPILE_STDCXX_testbody_new_in_11
|
||||
_AX_CXX_COMPILE_STDCXX_testbody_new_in_14
|
||||
)
|
||||
|
||||
m4_define([_AX_CXX_COMPILE_STDCXX_testbody_17],
|
||||
_AX_CXX_COMPILE_STDCXX_testbody_new_in_11
|
||||
_AX_CXX_COMPILE_STDCXX_testbody_new_in_14
|
||||
_AX_CXX_COMPILE_STDCXX_testbody_new_in_17
|
||||
)
|
||||
|
||||
dnl Tests for new features in C++11
|
||||
|
||||
m4_define([_AX_CXX_COMPILE_STDCXX_testbody_new_in_11], [[
|
||||
|
||||
// If the compiler admits that it is not ready for C++11, why torture it?
|
||||
// Hopefully, this will speed up the test.
|
||||
|
||||
#ifndef __cplusplus
|
||||
|
||||
#error "This is not a C++ compiler"
|
||||
|
||||
#elif __cplusplus < 201103L
|
||||
|
||||
#error "This is not a C++11 compiler"
|
||||
|
||||
#else
|
||||
|
||||
namespace cxx11
|
||||
{
|
||||
|
||||
namespace test_static_assert
|
||||
{
|
||||
|
||||
template <typename T>
|
||||
struct check
|
||||
{
|
||||
static_assert(sizeof(int) <= sizeof(T), "not big enough");
|
||||
};
|
||||
|
||||
}
|
||||
|
||||
namespace test_final_override
|
||||
{
|
||||
|
||||
struct Base
|
||||
{
|
||||
virtual void f() {}
|
||||
};
|
||||
|
||||
struct Derived : public Base
|
||||
{
|
||||
virtual void f() override {}
|
||||
};
|
||||
|
||||
}
|
||||
|
||||
namespace test_double_right_angle_brackets
|
||||
{
|
||||
|
||||
template < typename T >
|
||||
struct check {};
|
||||
|
||||
typedef check<void> single_type;
|
||||
typedef check<check<void>> double_type;
|
||||
typedef check<check<check<void>>> triple_type;
|
||||
typedef check<check<check<check<void>>>> quadruple_type;
|
||||
|
||||
}
|
||||
|
||||
namespace test_decltype
|
||||
{
|
||||
|
||||
int
|
||||
f()
|
||||
{
|
||||
int a = 1;
|
||||
decltype(a) b = 2;
|
||||
return a + b;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
namespace test_type_deduction
|
||||
{
|
||||
|
||||
template < typename T1, typename T2 >
|
||||
struct is_same
|
||||
{
|
||||
static const bool value = false;
|
||||
};
|
||||
|
||||
template < typename T >
|
||||
struct is_same<T, T>
|
||||
{
|
||||
static const bool value = true;
|
||||
};
|
||||
|
||||
template < typename T1, typename T2 >
|
||||
auto
|
||||
add(T1 a1, T2 a2) -> decltype(a1 + a2)
|
||||
{
|
||||
return a1 + a2;
|
||||
}
|
||||
|
||||
int
|
||||
test(const int c, volatile int v)
|
||||
{
|
||||
static_assert(is_same<int, decltype(0)>::value == true, "");
|
||||
static_assert(is_same<int, decltype(c)>::value == false, "");
|
||||
static_assert(is_same<int, decltype(v)>::value == false, "");
|
||||
auto ac = c;
|
||||
auto av = v;
|
||||
auto sumi = ac + av + 'x';
|
||||
auto sumf = ac + av + 1.0;
|
||||
static_assert(is_same<int, decltype(ac)>::value == true, "");
|
||||
static_assert(is_same<int, decltype(av)>::value == true, "");
|
||||
static_assert(is_same<int, decltype(sumi)>::value == true, "");
|
||||
static_assert(is_same<int, decltype(sumf)>::value == false, "");
|
||||
static_assert(is_same<int, decltype(add(c, v))>::value == true, "");
|
||||
return (sumf > 0.0) ? sumi : add(c, v);
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
namespace test_noexcept
|
||||
{
|
||||
|
||||
int f() { return 0; }
|
||||
int g() noexcept { return 0; }
|
||||
|
||||
static_assert(noexcept(f()) == false, "");
|
||||
static_assert(noexcept(g()) == true, "");
|
||||
|
||||
}
|
||||
|
||||
namespace test_constexpr
|
||||
{
|
||||
|
||||
template < typename CharT >
|
||||
unsigned long constexpr
|
||||
strlen_c_r(const CharT *const s, const unsigned long acc) noexcept
|
||||
{
|
||||
return *s ? strlen_c_r(s + 1, acc + 1) : acc;
|
||||
}
|
||||
|
||||
template < typename CharT >
|
||||
unsigned long constexpr
|
||||
strlen_c(const CharT *const s) noexcept
|
||||
{
|
||||
return strlen_c_r(s, 0UL);
|
||||
}
|
||||
|
||||
static_assert(strlen_c("") == 0UL, "");
|
||||
static_assert(strlen_c("1") == 1UL, "");
|
||||
static_assert(strlen_c("example") == 7UL, "");
|
||||
static_assert(strlen_c("another\0example") == 7UL, "");
|
||||
|
||||
}
|
||||
|
||||
namespace test_rvalue_references
|
||||
{
|
||||
|
||||
template < int N >
|
||||
struct answer
|
||||
{
|
||||
static constexpr int value = N;
|
||||
};
|
||||
|
||||
answer<1> f(int&) { return answer<1>(); }
|
||||
answer<2> f(const int&) { return answer<2>(); }
|
||||
answer<3> f(int&&) { return answer<3>(); }
|
||||
|
||||
void
|
||||
test()
|
||||
{
|
||||
int i = 0;
|
||||
const int c = 0;
|
||||
static_assert(decltype(f(i))::value == 1, "");
|
||||
static_assert(decltype(f(c))::value == 2, "");
|
||||
static_assert(decltype(f(0))::value == 3, "");
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
namespace test_uniform_initialization
|
||||
{
|
||||
|
||||
struct test
|
||||
{
|
||||
static const int zero {};
|
||||
static const int one {1};
|
||||
};
|
||||
|
||||
static_assert(test::zero == 0, "");
|
||||
static_assert(test::one == 1, "");
|
||||
|
||||
}
|
||||
|
||||
namespace test_lambdas
|
||||
{
|
||||
|
||||
void
|
||||
test1()
|
||||
{
|
||||
auto lambda1 = [](){};
|
||||
auto lambda2 = lambda1;
|
||||
lambda1();
|
||||
lambda2();
|
||||
}
|
||||
|
||||
int
|
||||
test2()
|
||||
{
|
||||
auto a = [](int i, int j){ return i + j; }(1, 2);
|
||||
auto b = []() -> int { return '0'; }();
|
||||
auto c = [=](){ return a + b; }();
|
||||
auto d = [&](){ return c; }();
|
||||
auto e = [a, &b](int x) mutable {
|
||||
const auto identity = [](int y){ return y; };
|
||||
for (auto i = 0; i < a; ++i)
|
||||
a += b--;
|
||||
return x + identity(a + b);
|
||||
}(0);
|
||||
return a + b + c + d + e;
|
||||
}
|
||||
|
||||
int
|
||||
test3()
|
||||
{
|
||||
const auto nullary = [](){ return 0; };
|
||||
const auto unary = [](int x){ return x; };
|
||||
using nullary_t = decltype(nullary);
|
||||
using unary_t = decltype(unary);
|
||||
const auto higher1st = [](nullary_t f){ return f(); };
|
||||
const auto higher2nd = [unary](nullary_t f1){
|
||||
return [unary, f1](unary_t f2){ return f2(unary(f1())); };
|
||||
};
|
||||
return higher1st(nullary) + higher2nd(nullary)(unary);
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
namespace test_variadic_templates
|
||||
{
|
||||
|
||||
template <int...>
|
||||
struct sum;
|
||||
|
||||
template <int N0, int... N1toN>
|
||||
struct sum<N0, N1toN...>
|
||||
{
|
||||
static constexpr auto value = N0 + sum<N1toN...>::value;
|
||||
};
|
||||
|
||||
template <>
|
||||
struct sum<>
|
||||
{
|
||||
static constexpr auto value = 0;
|
||||
};
|
||||
|
||||
static_assert(sum<>::value == 0, "");
|
||||
static_assert(sum<1>::value == 1, "");
|
||||
static_assert(sum<23>::value == 23, "");
|
||||
static_assert(sum<1, 2>::value == 3, "");
|
||||
static_assert(sum<5, 5, 11>::value == 21, "");
|
||||
static_assert(sum<2, 3, 5, 7, 11, 13>::value == 41, "");
|
||||
|
||||
}
|
||||
|
||||
// http://stackoverflow.com/questions/13728184/template-aliases-and-sfinae
|
||||
// Clang 3.1 fails with headers of libstd++ 4.8.3 when using std::function
|
||||
// because of this.
|
||||
namespace test_template_alias_sfinae
|
||||
{
|
||||
|
||||
struct foo {};
|
||||
|
||||
template<typename T>
|
||||
using member = typename T::member_type;
|
||||
|
||||
template<typename T>
|
||||
void func(...) {}
|
||||
|
||||
template<typename T>
|
||||
void func(member<T>*) {}
|
||||
|
||||
void test();
|
||||
|
||||
void test() { func<foo>(0); }
|
||||
|
||||
}
|
||||
|
||||
} // namespace cxx11
|
||||
|
||||
#endif // __cplusplus >= 201103L
|
||||
|
||||
]])
|
||||
|
||||
|
||||
dnl Tests for new features in C++14
|
||||
|
||||
m4_define([_AX_CXX_COMPILE_STDCXX_testbody_new_in_14], [[
|
||||
|
||||
// If the compiler admits that it is not ready for C++14, why torture it?
|
||||
// Hopefully, this will speed up the test.
|
||||
|
||||
#ifndef __cplusplus
|
||||
|
||||
#error "This is not a C++ compiler"
|
||||
|
||||
#elif __cplusplus < 201402L
|
||||
|
||||
#error "This is not a C++14 compiler"
|
||||
|
||||
#else
|
||||
|
||||
namespace cxx14
|
||||
{
|
||||
|
||||
namespace test_polymorphic_lambdas
|
||||
{
|
||||
|
||||
int
|
||||
test()
|
||||
{
|
||||
const auto lambda = [](auto&&... args){
|
||||
const auto istiny = [](auto x){
|
||||
return (sizeof(x) == 1UL) ? 1 : 0;
|
||||
};
|
||||
const int aretiny[] = { istiny(args)... };
|
||||
return aretiny[0];
|
||||
};
|
||||
return lambda(1, 1L, 1.0f, '1');
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
namespace test_binary_literals
|
||||
{
|
||||
|
||||
constexpr auto ivii = 0b0000000000101010;
|
||||
static_assert(ivii == 42, "wrong value");
|
||||
|
||||
}
|
||||
|
||||
namespace test_generalized_constexpr
|
||||
{
|
||||
|
||||
template < typename CharT >
|
||||
constexpr unsigned long
|
||||
strlen_c(const CharT *const s) noexcept
|
||||
{
|
||||
auto length = 0UL;
|
||||
for (auto p = s; *p; ++p)
|
||||
++length;
|
||||
return length;
|
||||
}
|
||||
|
||||
static_assert(strlen_c("") == 0UL, "");
|
||||
static_assert(strlen_c("x") == 1UL, "");
|
||||
static_assert(strlen_c("test") == 4UL, "");
|
||||
static_assert(strlen_c("another\0test") == 7UL, "");
|
||||
|
||||
}
|
||||
|
||||
namespace test_lambda_init_capture
|
||||
{
|
||||
|
||||
int
|
||||
test()
|
||||
{
|
||||
auto x = 0;
|
||||
const auto lambda1 = [a = x](int b){ return a + b; };
|
||||
const auto lambda2 = [a = lambda1(x)](){ return a; };
|
||||
return lambda2();
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
namespace test_digit_separators
|
||||
{
|
||||
|
||||
constexpr auto ten_million = 100'000'000;
|
||||
static_assert(ten_million == 100000000, "");
|
||||
|
||||
}
|
||||
|
||||
namespace test_return_type_deduction
|
||||
{
|
||||
|
||||
auto f(int& x) { return x; }
|
||||
decltype(auto) g(int& x) { return x; }
|
||||
|
||||
template < typename T1, typename T2 >
|
||||
struct is_same
|
||||
{
|
||||
static constexpr auto value = false;
|
||||
};
|
||||
|
||||
template < typename T >
|
||||
struct is_same<T, T>
|
||||
{
|
||||
static constexpr auto value = true;
|
||||
};
|
||||
|
||||
int
|
||||
test()
|
||||
{
|
||||
auto x = 0;
|
||||
static_assert(is_same<int, decltype(f(x))>::value, "");
|
||||
static_assert(is_same<int&, decltype(g(x))>::value, "");
|
||||
return x;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
} // namespace cxx14
|
||||
|
||||
#endif // __cplusplus >= 201402L
|
||||
|
||||
]])
|
||||
|
||||
|
||||
dnl Tests for new features in C++17
|
||||
|
||||
m4_define([_AX_CXX_COMPILE_STDCXX_testbody_new_in_17], [[
|
||||
|
||||
// If the compiler admits that it is not ready for C++17, why torture it?
|
||||
// Hopefully, this will speed up the test.
|
||||
|
||||
#ifndef __cplusplus
|
||||
|
||||
#error "This is not a C++ compiler"
|
||||
|
||||
#elif __cplusplus <= 201402L
|
||||
|
||||
#error "This is not a C++17 compiler"
|
||||
|
||||
#else
|
||||
|
||||
#if defined(__clang__)
|
||||
#define REALLY_CLANG
|
||||
#else
|
||||
#if defined(__GNUC__)
|
||||
#define REALLY_GCC
|
||||
#endif
|
||||
#endif
|
||||
|
||||
#include <initializer_list>
|
||||
#include <utility>
|
||||
#include <type_traits>
|
||||
|
||||
namespace cxx17
|
||||
{
|
||||
|
||||
#if !defined(REALLY_CLANG)
|
||||
namespace test_constexpr_lambdas
|
||||
{
|
||||
|
||||
// TODO: test it with clang++ from git
|
||||
|
||||
constexpr int foo = [](){return 42;}();
|
||||
|
||||
}
|
||||
#endif // !defined(REALLY_CLANG)
|
||||
|
||||
namespace test::nested_namespace::definitions
|
||||
{
|
||||
|
||||
}
|
||||
|
||||
namespace test_fold_expression
|
||||
{
|
||||
|
||||
template<typename... Args>
|
||||
int multiply(Args... args)
|
||||
{
|
||||
return (args * ... * 1);
|
||||
}
|
||||
|
||||
template<typename... Args>
|
||||
bool all(Args... args)
|
||||
{
|
||||
return (args && ...);
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
namespace test_extended_static_assert
|
||||
{
|
||||
|
||||
static_assert (true);
|
||||
|
||||
}
|
||||
|
||||
namespace test_auto_brace_init_list
|
||||
{
|
||||
|
||||
auto foo = {5};
|
||||
auto bar {5};
|
||||
|
||||
static_assert(std::is_same<std::initializer_list<int>, decltype(foo)>::value);
|
||||
static_assert(std::is_same<int, decltype(bar)>::value);
|
||||
}
|
||||
|
||||
namespace test_typename_in_template_template_parameter
|
||||
{
|
||||
|
||||
template<template<typename> typename X> struct D;
|
||||
|
||||
}
|
||||
|
||||
namespace test_fallthrough_nodiscard_maybe_unused_attributes
|
||||
{
|
||||
|
||||
int f1()
|
||||
{
|
||||
return 42;
|
||||
}
|
||||
|
||||
[[nodiscard]] int f2()
|
||||
{
|
||||
[[maybe_unused]] auto unused = f1();
|
||||
|
||||
switch (f1())
|
||||
{
|
||||
case 17:
|
||||
f1();
|
||||
[[fallthrough]];
|
||||
case 42:
|
||||
f1();
|
||||
}
|
||||
return f1();
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
namespace test_extended_aggregate_initialization
|
||||
{
|
||||
|
||||
struct base1
|
||||
{
|
||||
int b1, b2 = 42;
|
||||
};
|
||||
|
||||
struct base2
|
||||
{
|
||||
base2() {
|
||||
b3 = 42;
|
||||
}
|
||||
int b3;
|
||||
};
|
||||
|
||||
struct derived : base1, base2
|
||||
{
|
||||
int d;
|
||||
};
|
||||
|
||||
derived d1 {{1, 2}, {}, 4}; // full initialization
|
||||
derived d2 {{}, {}, 4}; // value-initialized bases
|
||||
|
||||
}
|
||||
|
||||
namespace test_general_range_based_for_loop
|
||||
{
|
||||
|
||||
struct iter
|
||||
{
|
||||
int i;
|
||||
|
||||
int& operator* ()
|
||||
{
|
||||
return i;
|
||||
}
|
||||
|
||||
const int& operator* () const
|
||||
{
|
||||
return i;
|
||||
}
|
||||
|
||||
iter& operator++()
|
||||
{
|
||||
++i;
|
||||
return *this;
|
||||
}
|
||||
};
|
||||
|
||||
struct sentinel
|
||||
{
|
||||
int i;
|
||||
};
|
||||
|
||||
bool operator== (const iter& i, const sentinel& s)
|
||||
{
|
||||
return i.i == s.i;
|
||||
}
|
||||
|
||||
bool operator!= (const iter& i, const sentinel& s)
|
||||
{
|
||||
return !(i == s);
|
||||
}
|
||||
|
||||
struct range
|
||||
{
|
||||
iter begin() const
|
||||
{
|
||||
return {0};
|
||||
}
|
||||
|
||||
sentinel end() const
|
||||
{
|
||||
return {5};
|
||||
}
|
||||
};
|
||||
|
||||
void f()
|
||||
{
|
||||
range r {};
|
||||
|
||||
for (auto i : r)
|
||||
{
|
||||
[[maybe_unused]] auto v = i;
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
namespace test_lambda_capture_asterisk_this_by_value
|
||||
{
|
||||
|
||||
struct t
|
||||
{
|
||||
int i;
|
||||
int foo()
|
||||
{
|
||||
return [*this]()
|
||||
{
|
||||
return i;
|
||||
}();
|
||||
}
|
||||
};
|
||||
|
||||
}
|
||||
|
||||
namespace test_enum_class_construction
|
||||
{
|
||||
|
||||
enum class byte : unsigned char
|
||||
{};
|
||||
|
||||
byte foo {42};
|
||||
|
||||
}
|
||||
|
||||
namespace test_constexpr_if
|
||||
{
|
||||
|
||||
template <bool cond>
|
||||
int f ()
|
||||
{
|
||||
if constexpr(cond)
|
||||
{
|
||||
return 13;
|
||||
}
|
||||
else
|
||||
{
|
||||
return 42;
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
namespace test_selection_statement_with_initializer
|
||||
{
|
||||
|
||||
int f()
|
||||
{
|
||||
return 13;
|
||||
}
|
||||
|
||||
int f2()
|
||||
{
|
||||
if (auto i = f(); i > 0)
|
||||
{
|
||||
return 3;
|
||||
}
|
||||
|
||||
switch (auto i = f(); i + 4)
|
||||
{
|
||||
case 17:
|
||||
return 2;
|
||||
|
||||
default:
|
||||
return 1;
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
#if !defined(REALLY_CLANG)
|
||||
namespace test_template_argument_deduction_for_class_templates
|
||||
{
|
||||
|
||||
// TODO: test it with clang++ from git
|
||||
|
||||
template <typename T1, typename T2>
|
||||
struct pair
|
||||
{
|
||||
pair (T1 p1, T2 p2)
|
||||
: m1 {p1},
|
||||
m2 {p2}
|
||||
{}
|
||||
|
||||
T1 m1;
|
||||
T2 m2;
|
||||
};
|
||||
|
||||
void f()
|
||||
{
|
||||
[[maybe_unused]] auto p = pair{13, 42u};
|
||||
}
|
||||
|
||||
}
|
||||
#endif // !defined(REALLY_CLANG)
|
||||
|
||||
namespace test_non_type_auto_template_parameters
|
||||
{
|
||||
|
||||
template <auto n>
|
||||
struct B
|
||||
{};
|
||||
|
||||
B<5> b1;
|
||||
B<'a'> b2;
|
||||
|
||||
}
|
||||
|
||||
#if !defined(REALLY_CLANG)
|
||||
namespace test_structured_bindings
|
||||
{
|
||||
|
||||
// TODO: test it with clang++ from git
|
||||
|
||||
int arr[2] = { 1, 2 };
|
||||
std::pair<int, int> pr = { 1, 2 };
|
||||
|
||||
auto f1() -> int(&)[2]
|
||||
{
|
||||
return arr;
|
||||
}
|
||||
|
||||
auto f2() -> std::pair<int, int>&
|
||||
{
|
||||
return pr;
|
||||
}
|
||||
|
||||
struct S
|
||||
{
|
||||
int x1 : 2;
|
||||
volatile double y1;
|
||||
};
|
||||
|
||||
S f3()
|
||||
{
|
||||
return {};
|
||||
}
|
||||
|
||||
auto [ x1, y1 ] = f1();
|
||||
auto& [ xr1, yr1 ] = f1();
|
||||
auto [ x2, y2 ] = f2();
|
||||
auto& [ xr2, yr2 ] = f2();
|
||||
const auto [ x3, y3 ] = f3();
|
||||
|
||||
}
|
||||
#endif // !defined(REALLY_CLANG)
|
||||
|
||||
#if !defined(REALLY_CLANG)
|
||||
namespace test_exception_spec_type_system
|
||||
{
|
||||
|
||||
// TODO: test it with clang++ from git
|
||||
|
||||
struct Good {};
|
||||
struct Bad {};
|
||||
|
||||
void g1() noexcept;
|
||||
void g2();
|
||||
|
||||
template<typename T>
|
||||
Bad
|
||||
f(T*, T*);
|
||||
|
||||
template<typename T1, typename T2>
|
||||
Good
|
||||
f(T1*, T2*);
|
||||
|
||||
static_assert (std::is_same_v<Good, decltype(f(g1, g2))>);
|
||||
|
||||
}
|
||||
#endif // !defined(REALLY_CLANG)
|
||||
|
||||
namespace test_inline_variables
|
||||
{
|
||||
|
||||
template<class T> void f(T)
|
||||
{}
|
||||
|
||||
template<class T> inline T g(T)
|
||||
{
|
||||
return T{};
|
||||
}
|
||||
|
||||
template<> inline void f<>(int)
|
||||
{}
|
||||
|
||||
template<> int g<>(int)
|
||||
{
|
||||
return 5;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
} // namespace cxx17
|
||||
|
||||
#endif // __cplusplus <= 201402L
|
||||
|
||||
]])
|
||||
@@ -1,39 +0,0 @@
|
||||
# =============================================================================
|
||||
# https://www.gnu.org/software/autoconf-archive/ax_cxx_compile_stdcxx_11.html
|
||||
# =============================================================================
|
||||
#
|
||||
# SYNOPSIS
|
||||
#
|
||||
# AX_CXX_COMPILE_STDCXX_11([ext|noext], [mandatory|optional])
|
||||
#
|
||||
# DESCRIPTION
|
||||
#
|
||||
# Check for baseline language coverage in the compiler for the C++11
|
||||
# standard; if necessary, add switches to CXX and CXXCPP to enable
|
||||
# support.
|
||||
#
|
||||
# This macro is a convenience alias for calling the AX_CXX_COMPILE_STDCXX
|
||||
# macro with the version set to C++11. The two optional arguments are
|
||||
# forwarded literally as the second and third argument respectively.
|
||||
# Please see the documentation for the AX_CXX_COMPILE_STDCXX macro for
|
||||
# more information. If you want to use this macro, you also need to
|
||||
# download the ax_cxx_compile_stdcxx.m4 file.
|
||||
#
|
||||
# LICENSE
|
||||
#
|
||||
# Copyright (c) 2008 Benjamin Kosnik <bkoz@redhat.com>
|
||||
# Copyright (c) 2012 Zack Weinberg <zackw@panix.com>
|
||||
# Copyright (c) 2013 Roy Stogner <roystgnr@ices.utexas.edu>
|
||||
# Copyright (c) 2014, 2015 Google Inc.; contributed by Alexey Sokolov <sokolov@google.com>
|
||||
# Copyright (c) 2015 Paul Norman <penorman@mac.com>
|
||||
# Copyright (c) 2015 Moritz Klammler <moritz@klammler.eu>
|
||||
#
|
||||
# Copying and distribution of this file, with or without modification, are
|
||||
# permitted in any medium without royalty provided the copyright notice
|
||||
# and this notice are preserved. This file is offered as-is, without any
|
||||
# warranty.
|
||||
|
||||
#serial 18
|
||||
|
||||
AX_REQUIRE_DEFINED([AX_CXX_COMPILE_STDCXX])
|
||||
AC_DEFUN([AX_CXX_COMPILE_STDCXX_11], [AX_CXX_COMPILE_STDCXX([11], [$1], [$2])])
|
||||
-135
@@ -1,135 +0,0 @@
|
||||
# ===========================================================================
|
||||
# http://www.gnu.org/software/autoconf-archive/ax_pkg_swig.html
|
||||
# ===========================================================================
|
||||
#
|
||||
# SYNOPSIS
|
||||
#
|
||||
# AX_PKG_SWIG([major.minor.micro], [action-if-found], [action-if-not-found])
|
||||
#
|
||||
# DESCRIPTION
|
||||
#
|
||||
# This macro searches for a SWIG installation on your system. If found,
|
||||
# then SWIG is AC_SUBST'd; if not found, then $SWIG is empty. If SWIG is
|
||||
# found, then SWIG_LIB is set to the SWIG library path, and AC_SUBST'd.
|
||||
#
|
||||
# You can use the optional first argument to check if the version of the
|
||||
# available SWIG is greater than or equal to the value of the argument. It
|
||||
# should have the format: N[.N[.N]] (N is a number between 0 and 999. Only
|
||||
# the first N is mandatory.) If the version argument is given (e.g.
|
||||
# 1.3.17), AX_PKG_SWIG checks that the swig package is this version number
|
||||
# or higher.
|
||||
#
|
||||
# As usual, action-if-found is executed if SWIG is found, otherwise
|
||||
# action-if-not-found is executed.
|
||||
#
|
||||
# In configure.in, use as:
|
||||
#
|
||||
# AX_PKG_SWIG(1.3.17, [], [ AC_MSG_ERROR([SWIG is required to build..]) ])
|
||||
# AX_SWIG_ENABLE_CXX
|
||||
# AX_SWIG_MULTI_MODULE_SUPPORT
|
||||
# AX_SWIG_PYTHON
|
||||
#
|
||||
# LICENSE
|
||||
#
|
||||
# Copyright (c) 2008 Sebastian Huber <sebastian-huber@web.de>
|
||||
# Copyright (c) 2008 Alan W. Irwin
|
||||
# Copyright (c) 2008 Rafael Laboissiere <rafael@laboissiere.net>
|
||||
# Copyright (c) 2008 Andrew Collier
|
||||
# Copyright (c) 2011 Murray Cumming <murrayc@openismus.com>
|
||||
#
|
||||
# This program is free software; you can redistribute it and/or modify it
|
||||
# under the terms of the GNU General Public License as published by the
|
||||
# Free Software Foundation; either version 2 of the License, or (at your
|
||||
# option) any later version.
|
||||
#
|
||||
# This program is distributed in the hope that it will be useful, but
|
||||
# WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
|
||||
# Public License for more details.
|
||||
#
|
||||
# You should have received a copy of the GNU General Public License along
|
||||
# with this program. If not, see <http://www.gnu.org/licenses/>.
|
||||
#
|
||||
# As a special exception, the respective Autoconf Macro's copyright owner
|
||||
# gives unlimited permission to copy, distribute and modify the configure
|
||||
# scripts that are the output of Autoconf when processing the Macro. You
|
||||
# need not follow the terms of the GNU General Public License when using
|
||||
# or distributing such scripts, even though portions of the text of the
|
||||
# Macro appear in them. The GNU General Public License (GPL) does govern
|
||||
# all other use of the material that constitutes the Autoconf Macro.
|
||||
#
|
||||
# This special exception to the GPL applies to versions of the Autoconf
|
||||
# Macro released by the Autoconf Archive. When you make and distribute a
|
||||
# modified version of the Autoconf Macro, you may extend this special
|
||||
# exception to the GPL to apply to your modified version as well.
|
||||
|
||||
#serial 11
|
||||
|
||||
AC_DEFUN([AX_PKG_SWIG],[
|
||||
# Ubuntu has swig 2.0 as /usr/bin/swig2.0
|
||||
AC_PATH_PROGS([SWIG],[swig swig2.0])
|
||||
if test -z "$SWIG" ; then
|
||||
m4_ifval([$3],[$3],[:])
|
||||
elif test -n "$1" ; then
|
||||
AC_MSG_CHECKING([SWIG version])
|
||||
[swig_version=`$SWIG -version 2>&1 | grep 'SWIG Version' | sed 's/.*\([0-9][0-9]*\.[0-9][0-9]*\.[0-9][0-9]*\).*/\1/g'`]
|
||||
AC_MSG_RESULT([$swig_version])
|
||||
if test -n "$swig_version" ; then
|
||||
# Calculate the required version number components
|
||||
[required=$1]
|
||||
[required_major=`echo $required | sed 's/[^0-9].*//'`]
|
||||
if test -z "$required_major" ; then
|
||||
[required_major=0]
|
||||
fi
|
||||
[required=`echo $required | sed 's/[0-9]*[^0-9]//'`]
|
||||
[required_minor=`echo $required | sed 's/[^0-9].*//'`]
|
||||
if test -z "$required_minor" ; then
|
||||
[required_minor=0]
|
||||
fi
|
||||
[required=`echo $required | sed 's/[0-9]*[^0-9]//'`]
|
||||
[required_patch=`echo $required | sed 's/[^0-9].*//'`]
|
||||
if test -z "$required_patch" ; then
|
||||
[required_patch=0]
|
||||
fi
|
||||
# Calculate the available version number components
|
||||
[available=$swig_version]
|
||||
[available_major=`echo $available | sed 's/[^0-9].*//'`]
|
||||
if test -z "$available_major" ; then
|
||||
[available_major=0]
|
||||
fi
|
||||
[available=`echo $available | sed 's/[0-9]*[^0-9]//'`]
|
||||
[available_minor=`echo $available | sed 's/[^0-9].*//'`]
|
||||
if test -z "$available_minor" ; then
|
||||
[available_minor=0]
|
||||
fi
|
||||
[available=`echo $available | sed 's/[0-9]*[^0-9]//'`]
|
||||
[available_patch=`echo $available | sed 's/[^0-9].*//'`]
|
||||
if test -z "$available_patch" ; then
|
||||
[available_patch=0]
|
||||
fi
|
||||
# Convert the version tuple into a single number for easier comparison.
|
||||
# Using base 100 should be safe since SWIG internally uses BCD values
|
||||
# to encode its version number.
|
||||
required_swig_vernum=`expr $required_major \* 10000 \
|
||||
\+ $required_minor \* 100 \+ $required_patch`
|
||||
available_swig_vernum=`expr $available_major \* 10000 \
|
||||
\+ $available_minor \* 100 \+ $available_patch`
|
||||
|
||||
if test $available_swig_vernum -lt $required_swig_vernum; then
|
||||
AC_MSG_WARN([SWIG version >= $1 is required. You have $swig_version.])
|
||||
SWIG=''
|
||||
m4_ifval([$3],[$3],[])
|
||||
else
|
||||
AC_MSG_CHECKING([for SWIG library])
|
||||
SWIG_LIB=`$SWIG -swiglib`
|
||||
AC_MSG_RESULT([$SWIG_LIB])
|
||||
m4_ifval([$2],[$2],[])
|
||||
fi
|
||||
else
|
||||
AC_MSG_WARN([cannot determine SWIG version])
|
||||
SWIG=''
|
||||
m4_ifval([$3],[$3],[])
|
||||
fi
|
||||
fi
|
||||
AC_SUBST([SWIG_LIB])
|
||||
])
|
||||
+1469
File diff suppressed because it is too large
Load Diff
Executable
+44
@@ -0,0 +1,44 @@
|
||||
/* config.h.in. Generated from configure.ac by autoheader. */
|
||||
|
||||
/* "" */
|
||||
#undef MY_BUILD_CPU
|
||||
|
||||
/* "" */
|
||||
#undef MY_BUILD_OS
|
||||
|
||||
/* "" */
|
||||
#undef MY_BUILD_VENDOR
|
||||
|
||||
/* "" */
|
||||
#undef MY_GNUNAME
|
||||
|
||||
/* "" */
|
||||
#undef MY_UNAME
|
||||
|
||||
/* Name of package */
|
||||
#undef PACKAGE
|
||||
|
||||
/* Define to the address where bug reports for this package should be sent. */
|
||||
#undef PACKAGE_BUGREPORT
|
||||
|
||||
/* Define to the full name of this package. */
|
||||
#undef PACKAGE_NAME
|
||||
|
||||
/* Define to the full name and version of this package. */
|
||||
#undef PACKAGE_STRING
|
||||
|
||||
/* Define to the one symbol short name of this package. */
|
||||
#undef PACKAGE_TARNAME
|
||||
|
||||
/* Define to the version of this package. */
|
||||
#undef PACKAGE_VERSION
|
||||
|
||||
/* Version number of package */
|
||||
#undef VERSION
|
||||
|
||||
/* Define to 1 if on AIX 3.
|
||||
System headers sometimes define this.
|
||||
We just want to avoid a redefinition error message. */
|
||||
#ifndef _ALL_SOURCE
|
||||
# undef _ALL_SOURCE
|
||||
#endif
|
||||
+1563
File diff suppressed because it is too large
Load Diff
File diff suppressed because it is too large
Load Diff
+504
-494
File diff suppressed because it is too large
Load Diff
@@ -0,0 +1,529 @@
|
||||
#! /bin/sh
|
||||
# depcomp - compile a program generating dependencies as side-effects
|
||||
|
||||
scriptversion=2005-02-09.22
|
||||
|
||||
# Copyright (C) 1999, 2000, 2003, 2004, 2005 Free Software Foundation, Inc.
|
||||
|
||||
# This program is free software; you can redistribute it and/or modify
|
||||
# it under the terms of the GNU General Public License as published by
|
||||
# the Free Software Foundation; either version 2, or (at your option)
|
||||
# any later version.
|
||||
|
||||
# This program is distributed in the hope that it will be useful,
|
||||
# but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
# GNU General Public License for more details.
|
||||
|
||||
# You should have received a copy of the GNU General Public License
|
||||
# along with this program; if not, write to the Free Software
|
||||
# Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA
|
||||
# 02111-1307, USA.
|
||||
|
||||
# As a special exception to the GNU General Public License, if you
|
||||
# distribute this file as part of a program that contains a
|
||||
# configuration script generated by Autoconf, you may include it under
|
||||
# the same distribution terms that you use for the rest of that program.
|
||||
|
||||
# Originally written by Alexandre Oliva <oliva@dcc.unicamp.br>.
|
||||
|
||||
case $1 in
|
||||
'')
|
||||
echo "$0: No command. Try \`$0 --help' for more information." 1>&2
|
||||
exit 1;
|
||||
;;
|
||||
-h | --h*)
|
||||
cat <<\EOF
|
||||
Usage: depcomp [--help] [--version] PROGRAM [ARGS]
|
||||
|
||||
Run PROGRAMS ARGS to compile a file, generating dependencies
|
||||
as side-effects.
|
||||
|
||||
Environment variables:
|
||||
depmode Dependency tracking mode.
|
||||
source Source file read by `PROGRAMS ARGS'.
|
||||
object Object file output by `PROGRAMS ARGS'.
|
||||
DEPDIR directory where to store dependencies.
|
||||
depfile Dependency file to output.
|
||||
tmpdepfile Temporary file to use when outputing dependencies.
|
||||
libtool Whether libtool is used (yes/no).
|
||||
|
||||
Report bugs to <bug-automake@gnu.org>.
|
||||
EOF
|
||||
exit $?
|
||||
;;
|
||||
-v | --v*)
|
||||
echo "depcomp $scriptversion"
|
||||
exit $?
|
||||
;;
|
||||
esac
|
||||
|
||||
if test -z "$depmode" || test -z "$source" || test -z "$object"; then
|
||||
echo "depcomp: Variables source, object and depmode must be set" 1>&2
|
||||
exit 1
|
||||
fi
|
||||
|
||||
# Dependencies for sub/bar.o or sub/bar.obj go into sub/.deps/bar.Po.
|
||||
depfile=${depfile-`echo "$object" |
|
||||
sed 's|[^\\/]*$|'${DEPDIR-.deps}'/&|;s|\.\([^.]*\)$|.P\1|;s|Pobj$|Po|'`}
|
||||
tmpdepfile=${tmpdepfile-`echo "$depfile" | sed 's/\.\([^.]*\)$/.T\1/'`}
|
||||
|
||||
rm -f "$tmpdepfile"
|
||||
|
||||
# Some modes work just like other modes, but use different flags. We
|
||||
# parameterize here, but still list the modes in the big case below,
|
||||
# to make depend.m4 easier to write. Note that we *cannot* use a case
|
||||
# here, because this file can only contain one case statement.
|
||||
if test "$depmode" = hp; then
|
||||
# HP compiler uses -M and no extra arg.
|
||||
gccflag=-M
|
||||
depmode=gcc
|
||||
fi
|
||||
|
||||
if test "$depmode" = dashXmstdout; then
|
||||
# This is just like dashmstdout with a different argument.
|
||||
dashmflag=-xM
|
||||
depmode=dashmstdout
|
||||
fi
|
||||
|
||||
case "$depmode" in
|
||||
gcc3)
|
||||
## gcc 3 implements dependency tracking that does exactly what
|
||||
## we want. Yay! Note: for some reason libtool 1.4 doesn't like
|
||||
## it if -MD -MP comes after the -MF stuff. Hmm.
|
||||
"$@" -MT "$object" -MD -MP -MF "$tmpdepfile"
|
||||
stat=$?
|
||||
if test $stat -eq 0; then :
|
||||
else
|
||||
rm -f "$tmpdepfile"
|
||||
exit $stat
|
||||
fi
|
||||
mv "$tmpdepfile" "$depfile"
|
||||
;;
|
||||
|
||||
gcc)
|
||||
## There are various ways to get dependency output from gcc. Here's
|
||||
## why we pick this rather obscure method:
|
||||
## - Don't want to use -MD because we'd like the dependencies to end
|
||||
## up in a subdir. Having to rename by hand is ugly.
|
||||
## (We might end up doing this anyway to support other compilers.)
|
||||
## - The DEPENDENCIES_OUTPUT environment variable makes gcc act like
|
||||
## -MM, not -M (despite what the docs say).
|
||||
## - Using -M directly means running the compiler twice (even worse
|
||||
## than renaming).
|
||||
if test -z "$gccflag"; then
|
||||
gccflag=-MD,
|
||||
fi
|
||||
"$@" -Wp,"$gccflag$tmpdepfile"
|
||||
stat=$?
|
||||
if test $stat -eq 0; then :
|
||||
else
|
||||
rm -f "$tmpdepfile"
|
||||
exit $stat
|
||||
fi
|
||||
rm -f "$depfile"
|
||||
echo "$object : \\" > "$depfile"
|
||||
alpha=ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz
|
||||
## The second -e expression handles DOS-style file names with drive letters.
|
||||
sed -e 's/^[^:]*: / /' \
|
||||
-e 's/^['$alpha']:\/[^:]*: / /' < "$tmpdepfile" >> "$depfile"
|
||||
## This next piece of magic avoids the `deleted header file' problem.
|
||||
## The problem is that when a header file which appears in a .P file
|
||||
## is deleted, the dependency causes make to die (because there is
|
||||
## typically no way to rebuild the header). We avoid this by adding
|
||||
## dummy dependencies for each header file. Too bad gcc doesn't do
|
||||
## this for us directly.
|
||||
tr ' ' '
|
||||
' < "$tmpdepfile" |
|
||||
## Some versions of gcc put a space before the `:'. On the theory
|
||||
## that the space means something, we add a space to the output as
|
||||
## well.
|
||||
## Some versions of the HPUX 10.20 sed can't process this invocation
|
||||
## correctly. Breaking it into two sed invocations is a workaround.
|
||||
sed -e 's/^\\$//' -e '/^$/d' -e '/:$/d' | sed -e 's/$/ :/' >> "$depfile"
|
||||
rm -f "$tmpdepfile"
|
||||
;;
|
||||
|
||||
hp)
|
||||
# This case exists only to let depend.m4 do its work. It works by
|
||||
# looking at the text of this script. This case will never be run,
|
||||
# since it is checked for above.
|
||||
exit 1
|
||||
;;
|
||||
|
||||
sgi)
|
||||
if test "$libtool" = yes; then
|
||||
"$@" "-Wp,-MDupdate,$tmpdepfile"
|
||||
else
|
||||
"$@" -MDupdate "$tmpdepfile"
|
||||
fi
|
||||
stat=$?
|
||||
if test $stat -eq 0; then :
|
||||
else
|
||||
rm -f "$tmpdepfile"
|
||||
exit $stat
|
||||
fi
|
||||
rm -f "$depfile"
|
||||
|
||||
if test -f "$tmpdepfile"; then # yes, the sourcefile depend on other files
|
||||
echo "$object : \\" > "$depfile"
|
||||
|
||||
# Clip off the initial element (the dependent). Don't try to be
|
||||
# clever and replace this with sed code, as IRIX sed won't handle
|
||||
# lines with more than a fixed number of characters (4096 in
|
||||
# IRIX 6.2 sed, 8192 in IRIX 6.5). We also remove comment lines;
|
||||
# the IRIX cc adds comments like `#:fec' to the end of the
|
||||
# dependency line.
|
||||
tr ' ' '
|
||||
' < "$tmpdepfile" \
|
||||
| sed -e 's/^.*\.o://' -e 's/#.*$//' -e '/^$/ d' | \
|
||||
tr '
|
||||
' ' ' >> $depfile
|
||||
echo >> $depfile
|
||||
|
||||
# The second pass generates a dummy entry for each header file.
|
||||
tr ' ' '
|
||||
' < "$tmpdepfile" \
|
||||
| sed -e 's/^.*\.o://' -e 's/#.*$//' -e '/^$/ d' -e 's/$/:/' \
|
||||
>> $depfile
|
||||
else
|
||||
# The sourcefile does not contain any dependencies, so just
|
||||
# store a dummy comment line, to avoid errors with the Makefile
|
||||
# "include basename.Plo" scheme.
|
||||
echo "#dummy" > "$depfile"
|
||||
fi
|
||||
rm -f "$tmpdepfile"
|
||||
;;
|
||||
|
||||
aix)
|
||||
# The C for AIX Compiler uses -M and outputs the dependencies
|
||||
# in a .u file. In older versions, this file always lives in the
|
||||
# current directory. Also, the AIX compiler puts `$object:' at the
|
||||
# start of each line; $object doesn't have directory information.
|
||||
# Version 6 uses the directory in both cases.
|
||||
stripped=`echo "$object" | sed 's/\(.*\)\..*$/\1/'`
|
||||
tmpdepfile="$stripped.u"
|
||||
if test "$libtool" = yes; then
|
||||
"$@" -Wc,-M
|
||||
else
|
||||
"$@" -M
|
||||
fi
|
||||
stat=$?
|
||||
|
||||
if test -f "$tmpdepfile"; then :
|
||||
else
|
||||
stripped=`echo "$stripped" | sed 's,^.*/,,'`
|
||||
tmpdepfile="$stripped.u"
|
||||
fi
|
||||
|
||||
if test $stat -eq 0; then :
|
||||
else
|
||||
rm -f "$tmpdepfile"
|
||||
exit $stat
|
||||
fi
|
||||
|
||||
if test -f "$tmpdepfile"; then
|
||||
outname="$stripped.o"
|
||||
# Each line is of the form `foo.o: dependent.h'.
|
||||
# Do two passes, one to just change these to
|
||||
# `$object: dependent.h' and one to simply `dependent.h:'.
|
||||
sed -e "s,^$outname:,$object :," < "$tmpdepfile" > "$depfile"
|
||||
sed -e "s,^$outname: \(.*\)$,\1:," < "$tmpdepfile" >> "$depfile"
|
||||
else
|
||||
# The sourcefile does not contain any dependencies, so just
|
||||
# store a dummy comment line, to avoid errors with the Makefile
|
||||
# "include basename.Plo" scheme.
|
||||
echo "#dummy" > "$depfile"
|
||||
fi
|
||||
rm -f "$tmpdepfile"
|
||||
;;
|
||||
|
||||
icc)
|
||||
# Intel's C compiler understands `-MD -MF file'. However on
|
||||
# icc -MD -MF foo.d -c -o sub/foo.o sub/foo.c
|
||||
# ICC 7.0 will fill foo.d with something like
|
||||
# foo.o: sub/foo.c
|
||||
# foo.o: sub/foo.h
|
||||
# which is wrong. We want:
|
||||
# sub/foo.o: sub/foo.c
|
||||
# sub/foo.o: sub/foo.h
|
||||
# sub/foo.c:
|
||||
# sub/foo.h:
|
||||
# ICC 7.1 will output
|
||||
# foo.o: sub/foo.c sub/foo.h
|
||||
# and will wrap long lines using \ :
|
||||
# foo.o: sub/foo.c ... \
|
||||
# sub/foo.h ... \
|
||||
# ...
|
||||
|
||||
"$@" -MD -MF "$tmpdepfile"
|
||||
stat=$?
|
||||
if test $stat -eq 0; then :
|
||||
else
|
||||
rm -f "$tmpdepfile"
|
||||
exit $stat
|
||||
fi
|
||||
rm -f "$depfile"
|
||||
# Each line is of the form `foo.o: dependent.h',
|
||||
# or `foo.o: dep1.h dep2.h \', or ` dep3.h dep4.h \'.
|
||||
# Do two passes, one to just change these to
|
||||
# `$object: dependent.h' and one to simply `dependent.h:'.
|
||||
sed "s,^[^:]*:,$object :," < "$tmpdepfile" > "$depfile"
|
||||
# Some versions of the HPUX 10.20 sed can't process this invocation
|
||||
# correctly. Breaking it into two sed invocations is a workaround.
|
||||
sed 's,^[^:]*: \(.*\)$,\1,;s/^\\$//;/^$/d;/:$/d' < "$tmpdepfile" |
|
||||
sed -e 's/$/ :/' >> "$depfile"
|
||||
rm -f "$tmpdepfile"
|
||||
;;
|
||||
|
||||
tru64)
|
||||
# The Tru64 compiler uses -MD to generate dependencies as a side
|
||||
# effect. `cc -MD -o foo.o ...' puts the dependencies into `foo.o.d'.
|
||||
# At least on Alpha/Redhat 6.1, Compaq CCC V6.2-504 seems to put
|
||||
# dependencies in `foo.d' instead, so we check for that too.
|
||||
# Subdirectories are respected.
|
||||
dir=`echo "$object" | sed -e 's|/[^/]*$|/|'`
|
||||
test "x$dir" = "x$object" && dir=
|
||||
base=`echo "$object" | sed -e 's|^.*/||' -e 's/\.o$//' -e 's/\.lo$//'`
|
||||
|
||||
if test "$libtool" = yes; then
|
||||
# With Tru64 cc, shared objects can also be used to make a
|
||||
# static library. This mecanism is used in libtool 1.4 series to
|
||||
# handle both shared and static libraries in a single compilation.
|
||||
# With libtool 1.4, dependencies were output in $dir.libs/$base.lo.d.
|
||||
#
|
||||
# With libtool 1.5 this exception was removed, and libtool now
|
||||
# generates 2 separate objects for the 2 libraries. These two
|
||||
# compilations output dependencies in in $dir.libs/$base.o.d and
|
||||
# in $dir$base.o.d. We have to check for both files, because
|
||||
# one of the two compilations can be disabled. We should prefer
|
||||
# $dir$base.o.d over $dir.libs/$base.o.d because the latter is
|
||||
# automatically cleaned when .libs/ is deleted, while ignoring
|
||||
# the former would cause a distcleancheck panic.
|
||||
tmpdepfile1=$dir.libs/$base.lo.d # libtool 1.4
|
||||
tmpdepfile2=$dir$base.o.d # libtool 1.5
|
||||
tmpdepfile3=$dir.libs/$base.o.d # libtool 1.5
|
||||
tmpdepfile4=$dir.libs/$base.d # Compaq CCC V6.2-504
|
||||
"$@" -Wc,-MD
|
||||
else
|
||||
tmpdepfile1=$dir$base.o.d
|
||||
tmpdepfile2=$dir$base.d
|
||||
tmpdepfile3=$dir$base.d
|
||||
tmpdepfile4=$dir$base.d
|
||||
"$@" -MD
|
||||
fi
|
||||
|
||||
stat=$?
|
||||
if test $stat -eq 0; then :
|
||||
else
|
||||
rm -f "$tmpdepfile1" "$tmpdepfile2" "$tmpdepfile3" "$tmpdepfile4"
|
||||
exit $stat
|
||||
fi
|
||||
|
||||
for tmpdepfile in "$tmpdepfile1" "$tmpdepfile2" "$tmpdepfile3" "$tmpdepfile4"
|
||||
do
|
||||
test -f "$tmpdepfile" && break
|
||||
done
|
||||
if test -f "$tmpdepfile"; then
|
||||
sed -e "s,^.*\.[a-z]*:,$object:," < "$tmpdepfile" > "$depfile"
|
||||
# That's a tab and a space in the [].
|
||||
sed -e 's,^.*\.[a-z]*:[ ]*,,' -e 's,$,:,' < "$tmpdepfile" >> "$depfile"
|
||||
else
|
||||
echo "#dummy" > "$depfile"
|
||||
fi
|
||||
rm -f "$tmpdepfile"
|
||||
;;
|
||||
|
||||
#nosideeffect)
|
||||
# This comment above is used by automake to tell side-effect
|
||||
# dependency tracking mechanisms from slower ones.
|
||||
|
||||
dashmstdout)
|
||||
# Important note: in order to support this mode, a compiler *must*
|
||||
# always write the preprocessed file to stdout, regardless of -o.
|
||||
"$@" || exit $?
|
||||
|
||||
# Remove the call to Libtool.
|
||||
if test "$libtool" = yes; then
|
||||
while test $1 != '--mode=compile'; do
|
||||
shift
|
||||
done
|
||||
shift
|
||||
fi
|
||||
|
||||
# Remove `-o $object'.
|
||||
IFS=" "
|
||||
for arg
|
||||
do
|
||||
case $arg in
|
||||
-o)
|
||||
shift
|
||||
;;
|
||||
$object)
|
||||
shift
|
||||
;;
|
||||
*)
|
||||
set fnord "$@" "$arg"
|
||||
shift # fnord
|
||||
shift # $arg
|
||||
;;
|
||||
esac
|
||||
done
|
||||
|
||||
test -z "$dashmflag" && dashmflag=-M
|
||||
# Require at least two characters before searching for `:'
|
||||
# in the target name. This is to cope with DOS-style filenames:
|
||||
# a dependency such as `c:/foo/bar' could be seen as target `c' otherwise.
|
||||
"$@" $dashmflag |
|
||||
sed 's:^[ ]*[^: ][^:][^:]*\:[ ]*:'"$object"'\: :' > "$tmpdepfile"
|
||||
rm -f "$depfile"
|
||||
cat < "$tmpdepfile" > "$depfile"
|
||||
tr ' ' '
|
||||
' < "$tmpdepfile" | \
|
||||
## Some versions of the HPUX 10.20 sed can't process this invocation
|
||||
## correctly. Breaking it into two sed invocations is a workaround.
|
||||
sed -e 's/^\\$//' -e '/^$/d' -e '/:$/d' | sed -e 's/$/ :/' >> "$depfile"
|
||||
rm -f "$tmpdepfile"
|
||||
;;
|
||||
|
||||
dashXmstdout)
|
||||
# This case only exists to satisfy depend.m4. It is never actually
|
||||
# run, as this mode is specially recognized in the preamble.
|
||||
exit 1
|
||||
;;
|
||||
|
||||
makedepend)
|
||||
"$@" || exit $?
|
||||
# Remove any Libtool call
|
||||
if test "$libtool" = yes; then
|
||||
while test $1 != '--mode=compile'; do
|
||||
shift
|
||||
done
|
||||
shift
|
||||
fi
|
||||
# X makedepend
|
||||
shift
|
||||
cleared=no
|
||||
for arg in "$@"; do
|
||||
case $cleared in
|
||||
no)
|
||||
set ""; shift
|
||||
cleared=yes ;;
|
||||
esac
|
||||
case "$arg" in
|
||||
-D*|-I*)
|
||||
set fnord "$@" "$arg"; shift ;;
|
||||
# Strip any option that makedepend may not understand. Remove
|
||||
# the object too, otherwise makedepend will parse it as a source file.
|
||||
-*|$object)
|
||||
;;
|
||||
*)
|
||||
set fnord "$@" "$arg"; shift ;;
|
||||
esac
|
||||
done
|
||||
obj_suffix="`echo $object | sed 's/^.*\././'`"
|
||||
touch "$tmpdepfile"
|
||||
${MAKEDEPEND-makedepend} -o"$obj_suffix" -f"$tmpdepfile" "$@"
|
||||
rm -f "$depfile"
|
||||
cat < "$tmpdepfile" > "$depfile"
|
||||
sed '1,2d' "$tmpdepfile" | tr ' ' '
|
||||
' | \
|
||||
## Some versions of the HPUX 10.20 sed can't process this invocation
|
||||
## correctly. Breaking it into two sed invocations is a workaround.
|
||||
sed -e 's/^\\$//' -e '/^$/d' -e '/:$/d' | sed -e 's/$/ :/' >> "$depfile"
|
||||
rm -f "$tmpdepfile" "$tmpdepfile".bak
|
||||
;;
|
||||
|
||||
cpp)
|
||||
# Important note: in order to support this mode, a compiler *must*
|
||||
# always write the preprocessed file to stdout.
|
||||
"$@" || exit $?
|
||||
|
||||
# Remove the call to Libtool.
|
||||
if test "$libtool" = yes; then
|
||||
while test $1 != '--mode=compile'; do
|
||||
shift
|
||||
done
|
||||
shift
|
||||
fi
|
||||
|
||||
# Remove `-o $object'.
|
||||
IFS=" "
|
||||
for arg
|
||||
do
|
||||
case $arg in
|
||||
-o)
|
||||
shift
|
||||
;;
|
||||
$object)
|
||||
shift
|
||||
;;
|
||||
*)
|
||||
set fnord "$@" "$arg"
|
||||
shift # fnord
|
||||
shift # $arg
|
||||
;;
|
||||
esac
|
||||
done
|
||||
|
||||
"$@" -E |
|
||||
sed -n '/^# [0-9][0-9]* "\([^"]*\)".*/ s:: \1 \\:p' |
|
||||
sed '$ s: \\$::' > "$tmpdepfile"
|
||||
rm -f "$depfile"
|
||||
echo "$object : \\" > "$depfile"
|
||||
cat < "$tmpdepfile" >> "$depfile"
|
||||
sed < "$tmpdepfile" '/^$/d;s/^ //;s/ \\$//;s/$/ :/' >> "$depfile"
|
||||
rm -f "$tmpdepfile"
|
||||
;;
|
||||
|
||||
msvisualcpp)
|
||||
# Important note: in order to support this mode, a compiler *must*
|
||||
# always write the preprocessed file to stdout, regardless of -o,
|
||||
# because we must use -o when running libtool.
|
||||
"$@" || exit $?
|
||||
IFS=" "
|
||||
for arg
|
||||
do
|
||||
case "$arg" in
|
||||
"-Gm"|"/Gm"|"-Gi"|"/Gi"|"-ZI"|"/ZI")
|
||||
set fnord "$@"
|
||||
shift
|
||||
shift
|
||||
;;
|
||||
*)
|
||||
set fnord "$@" "$arg"
|
||||
shift
|
||||
shift
|
||||
;;
|
||||
esac
|
||||
done
|
||||
"$@" -E |
|
||||
sed -n '/^#line [0-9][0-9]* "\([^"]*\)"/ s::echo "`cygpath -u \\"\1\\"`":p' | sort | uniq > "$tmpdepfile"
|
||||
rm -f "$depfile"
|
||||
echo "$object : \\" > "$depfile"
|
||||
. "$tmpdepfile" | sed 's% %\\ %g' | sed -n '/^\(.*\)$/ s:: \1 \\:p' >> "$depfile"
|
||||
echo " " >> "$depfile"
|
||||
. "$tmpdepfile" | sed 's% %\\ %g' | sed -n '/^\(.*\)$/ s::\1\::p' >> "$depfile"
|
||||
rm -f "$tmpdepfile"
|
||||
;;
|
||||
|
||||
none)
|
||||
exec "$@"
|
||||
;;
|
||||
|
||||
*)
|
||||
echo "Unknown depmode $depmode" 1>&2
|
||||
exit 1
|
||||
;;
|
||||
esac
|
||||
|
||||
exit 0
|
||||
|
||||
# Local Variables:
|
||||
# mode: shell-script
|
||||
# sh-indentation: 2
|
||||
# eval: (add-hook 'write-file-hooks 'time-stamp)
|
||||
# time-stamp-start: "scriptversion="
|
||||
# time-stamp-format: "%:y-%02m-%02d.%02H"
|
||||
# time-stamp-end: "$"
|
||||
# End:
|
||||
Binary file not shown.
Binary file not shown.
Binary file not shown.
@@ -0,0 +1,294 @@
|
||||
#FIG 3.2
|
||||
Landscape
|
||||
Center
|
||||
Inches
|
||||
Letter
|
||||
100.00
|
||||
Single
|
||||
-2
|
||||
1200 2
|
||||
0 32 #c6b797
|
||||
0 33 #eff8ff
|
||||
0 34 #dccba6
|
||||
0 35 #404040
|
||||
0 36 #808080
|
||||
0 37 #c0c0c0
|
||||
0 38 #e0e0e0
|
||||
0 39 #8e8f8e
|
||||
0 40 #aaaaaa
|
||||
0 41 #555555
|
||||
0 42 #bebebe
|
||||
0 43 #515151
|
||||
0 44 #e7e3e7
|
||||
0 45 #000049
|
||||
0 46 #797979
|
||||
0 47 #303430
|
||||
0 48 #414141
|
||||
0 49 #c7b696
|
||||
0 50 #8e8e8e
|
||||
0 51 #414541
|
||||
0 52 #8e8e8e
|
||||
0 53 #000079
|
||||
0 54 #ff8200
|
||||
0 55 #007d00
|
||||
0 56 #0000be
|
||||
# Desktop computer
|
||||
6 375 2400 2025 4050
|
||||
6 1575 3825 2025 4050
|
||||
2 3 0 1 -1 7 2 0 20 0.000 0 0 -1 0 0 8
|
||||
1615 3916 1719 3874 1908 3874 1950 3853 1972 3853 1846 3937
|
||||
1615 3937 1615 3916
|
||||
2 3 0 1 -1 7 2 0 20 0.000 0 0 -1 0 0 6
|
||||
1888 3853 1846 3874 1908 3874 1950 3853 1908 3853 1888 3853
|
||||
2 3 0 1 -1 7 2 0 20 0.000 0 0 -1 0 0 5
|
||||
1846 3874 1888 3853 1846 3853 1803 3874 1846 3874
|
||||
2 3 0 1 -1 7 2 0 20 0.000 0 0 -1 0 0 5
|
||||
1803 3874 1740 3874 1803 3853 1824 3853 1803 3874
|
||||
2 3 0 1 -1 7 2 0 20 0.000 0 0 -1 0 0 6
|
||||
1846 3958 1866 3916 1972 3853 1992 3895 1846 3979 1846 3958
|
||||
2 3 0 1 -1 7 2 0 20 0.000 0 0 -1 0 0 5
|
||||
1615 3937 1866 3937 1846 3958 1615 3958 1615 3937
|
||||
2 3 0 1 -1 7 2 0 20 0.000 0 0 -1 0 0 9
|
||||
1615 3958 1594 4000 1719 4000 1846 4000 1866 4000 1992 3916
|
||||
1992 3895 1846 3958 1615 3958
|
||||
-6
|
||||
6 600 2400 1950 3675
|
||||
2 3 0 1 -1 7 2 0 15 0.000 0 0 -1 0 0 6
|
||||
669 2530 648 3307 1594 3307 1615 2468 1594 2468 669 2530
|
||||
2 3 0 1 -1 7 0 0 10 0.000 0 0 -1 0 0 5
|
||||
1615 2468 1594 3307 1719 3307 1719 2509 1615 2468
|
||||
2 3 0 1 -1 7 0 0 15 0.000 0 0 -1 0 0 5
|
||||
1762 2677 1908 2719 1908 3139 1762 3203 1762 2677
|
||||
2 3 0 1 -1 7 2 0 15 0.000 0 0 -1 0 0 6
|
||||
732 3349 732 3412 1594 3454 1594 3371 753 3349 732 3349
|
||||
2 3 0 1 -1 7 1 0 15 0.000 0 0 -1 0 0 5
|
||||
1594 3371 1846 3280 1846 3348 1594 3454 1594 3371
|
||||
2 3 0 1 -1 7 2 0 15 0.000 0 0 -1 0 0 5
|
||||
732 3433 732 3559 1594 3601 1594 3454 732 3433
|
||||
2 3 0 1 -1 0 2 0 20 0.000 0 0 -1 0 0 5
|
||||
1594 3454 732 3412 753 3433 1572 3454 1594 3454
|
||||
2 3 0 1 -1 7 2 0 8 0.000 0 0 -1 0 0 5
|
||||
1594 3454 1594 3601 1635 3580 1635 3433 1594 3454
|
||||
2 3 0 1 -1 7 2 0 8 0.000 0 0 -1 0 0 5
|
||||
1719 3538 1846 3475 1846 3349 1719 3391 1719 3538
|
||||
2 3 0 1 -1 7 2 0 10 0.000 0 0 -1 0 0 5
|
||||
1635 3496 1719 3454 1719 3391 1635 3433 1635 3496
|
||||
2 3 0 1 -1 7 2 0 10 0.000 0 0 -1 0 0 5
|
||||
1635 3580 1719 3538 1719 3475 1635 3517 1635 3580
|
||||
2 1 0 2 -1 7 2 0 8 0.000 0 0 -1 0 0 2
|
||||
1635 3496 1719 3454
|
||||
2 1 0 2 -1 7 2 0 8 0.000 0 0 -1 0 0 2
|
||||
1635 3517 1719 3475
|
||||
2 3 0 1 -1 7 3 0 10 0.000 0 0 -1 0 0 7
|
||||
732 3559 732 3601 816 3601 963 3559 963 3538 816 3559
|
||||
732 3559
|
||||
2 3 0 1 -1 7 3 0 10 0.000 1 0 -1 0 0 5
|
||||
1490 3596 1490 3641 1594 3643 1594 3601 1490 3596
|
||||
2 3 0 1 -1 7 3 0 10 0.000 1 0 -1 0 0 5
|
||||
1594 3643 1635 3601 1635 3580 1594 3601 1594 3643
|
||||
2 3 0 1 -1 7 3 0 10 0.000 0 0 -1 0 0 5
|
||||
1846 3475 1846 3496 1803 3517 1803 3496 1846 3475
|
||||
2 3 0 1 -1 7 3 0 10 0.000 0 0 -1 0 0 4
|
||||
1803 3517 1740 3517 1803 3496 1803 3517
|
||||
2 3 0 1 -1 7 4 0 15 0.000 1 0 -1 0 0 6
|
||||
879 3307 732 3349 1594 3371 1846 3279 1762 3265 879 3307
|
||||
2 3 0 1 -1 7 0 0 10 0.000 1 0 -1 0 0 5
|
||||
1719 2509 1719 3307 1762 3265 1762 2552 1719 2509
|
||||
3 1 0 1 -1 7 1 0 20 0.000 0 0 0 11
|
||||
774 2656 816 2614 1488 2572 1510 2593 1530 2636 1530 3139
|
||||
1510 3181 1467 3203 837 3203 795 3181 774 3160
|
||||
1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000
|
||||
1.000 1.000 1.000
|
||||
-6
|
||||
6 375 3675 1650 4050
|
||||
2 3 0 1 -1 7 0 0 20 0.000 0 0 -1 0 0 8
|
||||
1207 3935 1205 3897 1229 3888 1265 3890 1264 3922 1244 3937
|
||||
1212 3937 1207 3935
|
||||
2 3 0 1 -1 7 0 0 20 0.000 0 0 -1 0 0 8
|
||||
1264 3939 1261 3900 1285 3892 1320 3893 1319 3925 1300 3940
|
||||
1268 3940 1264 3939
|
||||
2 3 0 1 -1 7 0 0 20 0.000 0 0 -1 0 0 8
|
||||
1318 3950 1315 3912 1339 3904 1374 3905 1374 3937 1355 3953
|
||||
1322 3953 1318 3950
|
||||
2 3 0 1 -1 7 0 0 20 0.000 0 0 -1 0 0 8
|
||||
1151 3935 1150 3897 1173 3888 1209 3890 1207 3922 1188 3937
|
||||
1157 3937 1151 3935
|
||||
2 3 0 1 -1 7 1 0 20 0.000 0 0 -1 0 0 8
|
||||
1169 3900 1166 3861 1190 3853 1226 3854 1224 3886 1205 3901
|
||||
1173 3901 1169 3900
|
||||
2 3 0 1 -1 7 1 0 20 0.000 0 0 -1 0 0 8
|
||||
1225 3904 1223 3865 1247 3857 1282 3858 1281 3891 1262 3906
|
||||
1230 3906 1225 3904
|
||||
2 3 0 1 -1 7 1 0 20 0.000 0 0 -1 0 0 8
|
||||
1281 3908 1279 3869 1303 3860 1338 3862 1337 3893 1318 3909
|
||||
1286 3909 1281 3908
|
||||
2 3 0 1 -1 7 1 0 20 0.000 0 0 -1 0 0 8
|
||||
1344 3909 1342 3870 1366 3862 1401 3863 1399 3895 1381 3911
|
||||
1349 3911 1344 3909
|
||||
2 3 0 1 -1 7 0 0 20 0.000 0 0 -1 0 0 9
|
||||
1214 3854 1214 3835 1233 3822 1272 3825 1272 3831 1260 3839
|
||||
1258 3856 1211 3854 1214 3854
|
||||
2 3 0 1 -1 7 0 0 20 0.000 0 0 -1 0 0 9
|
||||
1258 3855 1258 3836 1277 3823 1315 3826 1315 3831 1304 3839
|
||||
1302 3857 1255 3855 1258 3855
|
||||
2 3 0 1 -1 7 0 0 20 0.000 0 0 -1 0 0 9
|
||||
1300 3862 1300 3843 1319 3830 1359 3833 1359 3838 1346 3846
|
||||
1344 3863 1297 3862 1300 3862
|
||||
2 3 0 1 -1 7 0 0 20 0.000 0 0 -1 0 0 9
|
||||
1344 3863 1344 3845 1363 3831 1402 3835 1402 3839 1390 3848
|
||||
1389 3865 1341 3863 1344 3863
|
||||
2 3 0 1 -1 7 0 0 20 0.000 0 0 -1 0 0 9
|
||||
1387 3869 1387 3850 1406 3836 1444 3839 1444 3845 1436 3871
|
||||
1417 3882 1383 3869 1387 3869
|
||||
2 3 0 1 -1 7 0 0 20 0.000 0 0 -1 0 0 9
|
||||
708 3798 708 3779 727 3766 766 3769 766 3774 755 3783
|
||||
752 3800 705 3798 708 3798
|
||||
2 3 0 1 -1 7 0 0 20 0.000 0 0 -1 0 0 9
|
||||
747 3803 747 3784 766 3771 805 3775 805 3780 793 3788
|
||||
791 3805 744 3803 747 3803
|
||||
2 3 0 1 -1 7 0 0 20 0.000 0 0 -1 0 0 9
|
||||
794 3805 794 3787 813 3773 852 3777 852 3781 840 3790
|
||||
839 3807 791 3805 794 3805
|
||||
2 3 0 1 -1 7 0 0 20 0.000 0 0 -1 0 0 9
|
||||
832 3810 832 3792 850 3778 889 3781 889 3787 878 3795
|
||||
876 3812 828 3810 832 3810
|
||||
2 3 0 1 -1 7 0 0 20 0.000 0 0 -1 0 0 9
|
||||
876 3812 876 3793 894 3780 934 3784 934 3788 921 3797
|
||||
919 3814 872 3812 876 3812
|
||||
2 3 0 1 -1 7 0 0 20 0.000 0 0 -1 0 0 9
|
||||
919 3816 919 3797 938 3784 977 3787 977 3792 965 3800
|
||||
964 3817 916 3816 919 3816
|
||||
2 3 0 1 -1 7 0 0 20 0.000 0 0 -1 0 0 9
|
||||
962 3816 962 3797 981 3784 1019 3787 1019 3792 1008 3800
|
||||
1006 3817 959 3816 962 3816
|
||||
2 3 0 1 -1 7 0 0 20 0.000 0 0 -1 0 0 9
|
||||
1001 3819 1001 3800 1019 3787 1058 3790 1058 3795 1047 3803
|
||||
1045 3820 997 3819 1001 3819
|
||||
2 3 0 1 -1 7 0 0 20 0.000 0 0 -1 0 0 9
|
||||
1049 3819 1049 3800 1067 3787 1106 3790 1106 3795 1094 3803
|
||||
1092 3820 1045 3819 1049 3819
|
||||
2 3 0 1 -1 7 0 0 20 0.000 0 0 -1 0 0 9
|
||||
661 3822 661 3803 679 3790 718 3793 718 3799 706 3807
|
||||
704 3824 658 3822 661 3822
|
||||
2 3 0 1 -1 7 0 0 20 0.000 0 0 -1 0 0 9
|
||||
704 3831 704 3812 724 3799 762 3802 762 3807 750 3816
|
||||
748 3832 702 3831 704 3831
|
||||
2 3 0 1 -1 7 0 0 20 0.000 0 0 -1 0 0 9
|
||||
748 3834 748 3816 768 3802 806 3805 806 3810 794 3819
|
||||
793 3835 746 3834 748 3834
|
||||
2 3 0 1 -1 7 0 0 20 0.000 0 0 -1 0 0 9
|
||||
789 3838 789 3819 808 3805 847 3808 847 3814 835 3822
|
||||
833 3839 786 3838 789 3838
|
||||
2 3 0 1 -1 7 0 0 20 0.000 0 0 -1 0 0 9
|
||||
832 3840 832 3822 850 3808 889 3812 889 3817 878 3825
|
||||
876 3842 828 3840 832 3840
|
||||
2 3 0 1 -1 7 0 0 20 0.000 0 0 -1 0 0 9
|
||||
874 3842 874 3824 893 3810 932 3814 932 3819 919 3827
|
||||
918 3844 871 3842 874 3842
|
||||
2 3 0 1 -1 7 0 0 20 0.000 0 0 -1 0 0 9
|
||||
916 3846 916 3827 934 3814 974 3817 974 3822 962 3831
|
||||
960 3847 913 3846 916 3846
|
||||
2 3 0 1 -1 7 0 0 20 0.000 0 0 -1 0 0 9
|
||||
961 3846 961 3828 980 3814 1018 3817 1018 3823 1007 3831
|
||||
1005 3847 957 3846 961 3846
|
||||
2 3 0 1 -1 7 0 0 20 0.000 0 0 -1 0 0 9
|
||||
1005 3849 1005 3831 1023 3817 1062 3821 1062 3826 1050 3834
|
||||
1049 3851 1002 3849 1005 3849
|
||||
2 3 0 1 -1 7 0 0 20 0.000 0 0 -1 0 0 9
|
||||
1049 3851 1049 3832 1067 3819 1107 3823 1107 3828 1095 3836
|
||||
1093 3853 1045 3851 1049 3851
|
||||
2 3 0 1 -1 7 1 0 20 0.000 0 0 -1 0 0 8
|
||||
656 3866 655 3827 678 3819 714 3820 713 3853 693 3868
|
||||
662 3868 656 3866
|
||||
2 3 0 1 -1 7 1 0 20 0.000 0 0 -1 0 0 8
|
||||
700 3869 698 3831 722 3822 757 3824 755 3856 737 3871
|
||||
704 3871 700 3869
|
||||
2 3 0 1 -1 7 1 0 20 0.000 0 0 -1 0 0 8
|
||||
744 3876 741 3838 766 3829 801 3831 799 3862 781 3878
|
||||
748 3878 744 3876
|
||||
2 3 0 1 -1 7 1 0 20 0.000 0 0 -1 0 0 8
|
||||
792 3882 790 3842 814 3834 849 3835 848 3868 829 3883
|
||||
797 3883 792 3882
|
||||
2 3 0 1 -1 7 1 0 20 0.000 0 0 -1 0 0 8
|
||||
832 3884 830 3846 854 3837 889 3839 887 3870 869 3886
|
||||
836 3886 832 3884
|
||||
2 3 0 1 -1 7 1 0 20 0.000 0 0 -1 0 0 8
|
||||
880 3890 879 3851 902 3842 938 3844 936 3876 918 3892
|
||||
886 3892 880 3890
|
||||
2 3 0 1 -1 7 1 0 20 0.000 0 0 -1 0 0 8
|
||||
932 3893 930 3854 954 3846 989 3847 988 3879 969 3895
|
||||
936 3895 932 3893
|
||||
2 3 0 1 -1 7 1 0 20 0.000 0 0 -1 0 0 8
|
||||
982 3895 981 3856 1004 3847 1040 3849 1038 3882 1019 3897
|
||||
988 3897 982 3895
|
||||
2 3 0 1 -1 7 1 0 20 0.000 0 0 -1 0 0 8
|
||||
1025 3898 1023 3860 1047 3851 1082 3853 1080 3885 1062 3900
|
||||
1029 3900 1025 3898
|
||||
2 3 0 1 -1 7 1 0 20 0.000 0 0 -1 0 0 8
|
||||
618 3861 616 3822 640 3814 675 3816 674 3847 655 3862
|
||||
623 3862 618 3861
|
||||
2 3 0 1 -1 7 1 0 20 0.000 0 0 -1 0 0 8
|
||||
572 3888 571 3849 594 3840 630 3842 629 3875 609 3890
|
||||
578 3890 572 3888
|
||||
2 3 0 1 -1 7 0 0 20 0.000 0 0 -1 0 0 9
|
||||
609 3888 609 3869 629 3856 667 3860 667 3864 655 3873
|
||||
654 3890 607 3888 609 3888
|
||||
2 3 0 1 -1 7 0 0 20 0.000 0 0 -1 0 0 7
|
||||
654 3893 984 3934 988 3898 664 3866 652 3882 652 3888
|
||||
654 3893
|
||||
2 3 0 1 -1 7 0 0 20 0.000 0 0 -1 0 0 9
|
||||
986 3931 986 3913 1004 3900 1043 3902 1043 3908 1032 3916
|
||||
1029 3933 982 3931 986 3931
|
||||
2 3 0 1 -1 7 5 0 15 0.000 0 0 -1 0 0 9
|
||||
429 3871 683 3743 1551 3816 1576 3831 1573 3840 1426 3990
|
||||
427 3883 427 3869 429 3871
|
||||
2 1 0 1 -1 7 0 0 -1 0.000 0 0 -1 0 0 3
|
||||
423 3910 1434 4014 1575 3875
|
||||
2 3 0 0 -1 7 5 0 10 0.000 0 0 -1 0 0 8
|
||||
429 3885 429 3928 1430 4050 1580 3895 1576 3831 1423 3990
|
||||
425 3882 429 3885
|
||||
-6
|
||||
-6
|
||||
6 4050 3000 7500 3750
|
||||
2 1 0 1 0 0 0 0 -1 0.000 0 0 -1 0 0 4
|
||||
7500 3000 5430 3000 6120 3690 4050 3690
|
||||
-6
|
||||
# TB Data
|
||||
6 8025 6000 9000 7425
|
||||
5 1 0 1 -1 -1 0 0 -1 0.000 0 1 0 0 8490.000 5700.000 8040 6300 8490 6450 8940 6300
|
||||
5 1 0 1 -1 -1 0 0 -1 0.000 0 1 0 0 8490.000 6600.000 8040 7200 8490 7350 8940 7200
|
||||
1 2 0 1 -1 -1 0 0 -1 0.000 1 0.0000 8490 6150 450 150 8040 6000 8940 6300
|
||||
2 1 0 1 -1 -1 0 0 -1 0.000 0 0 0 0 0 2
|
||||
8940 6225 8940 7200
|
||||
2 1 0 1 -1 -1 0 0 -1 0.000 0 0 0 0 0 2
|
||||
8040 6225 8040 7200
|
||||
4 1 -1 0 0 2 12 0.0000 6 135 270 8490 6675 TB\001
|
||||
4 1 -1 0 0 2 12 0.0000 6 135 405 8490 7275 Data\001
|
||||
-6
|
||||
2 1 0 1 0 7 50 0 -1 0.000 0 0 -1 1 1 2
|
||||
0 0 1.00 60.00 120.00
|
||||
0 0 1.00 60.00 120.00
|
||||
2025 3075 2475 3075
|
||||
2 4 0 1 0 7 50 0 -1 0.000 0 0 7 0 0 5
|
||||
3750 4650 3750 2100 2550 2100 2550 4650 3750 4650
|
||||
2 4 0 1 0 7 50 0 -1 0.000 0 0 7 0 0 5
|
||||
9075 4650 9075 2100 7875 2100 7875 4650 9075 4650
|
||||
2 1 0 1 0 7 50 0 -1 0.000 0 0 -1 0 1 2
|
||||
0 0 3.00 60.00 120.00
|
||||
8400 4800 8400 6000
|
||||
2 1 0 1 0 7 50 0 -1 0.000 0 0 -1 0 1 2
|
||||
0 0 3.00 60.00 120.00
|
||||
8250 4800 8250 6000
|
||||
2 1 0 1 0 7 50 0 -1 0.000 0 0 -1 0 1 2
|
||||
0 0 3.00 60.00 120.00
|
||||
8100 4800 8100 6000
|
||||
2 1 0 1 0 7 50 0 -1 0.000 0 0 -1 0 1 2
|
||||
0 0 3.00 60.00 120.00
|
||||
8850 4800 8850 6000
|
||||
2 4 0 1 0 7 50 -1 -1 0.000 0 0 7 0 0 5
|
||||
12000 4500 12000 3975 8175 3975 8175 4500 12000 4500
|
||||
4 0 0 50 0 2 15 0.0000 4 30 360 8475 5550 ......\001
|
||||
4 0 0 50 0 0 20 0.0000 4 195 570 2625 3375 VisIt\001
|
||||
4 0 0 50 0 0 20 0.0000 4 195 570 7950 3375 VisIt\001
|
||||
4 0 0 50 -1 2 16 0.0000 4 225 1410 9375 4275 H5xxx plugin\001
|
||||
4 0 0 50 0 0 20 0.0000 4 255 1650 6450 5550 n-way parallel\001
|
||||
Binary file not shown.
Binary file not shown.
File diff suppressed because one or more lines are too long
@@ -0,0 +1,262 @@
|
||||
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
|
||||
<html>
|
||||
<head>
|
||||
<title>Put your title here!!</title>
|
||||
<meta http-equiv="Content-Type" content="text/html; charset=us-ascii">
|
||||
<meta name="keywords" content="scientific visualization">
|
||||
<meta name="sitemap" content="put a brief descriptive phrase here that will show up in the site map:foo">
|
||||
|
||||
|
||||
<div id="maincenter">
|
||||
|
||||
|
||||
<head>
|
||||
<title>Building H5Part</title>
|
||||
</head>
|
||||
|
||||
<body bgcolor="#F0F0F0">
|
||||
<font face="arial,helvetica" size="+2" color="#555588"><h2>Building H5Part</h2></font>
|
||||
<UL>
|
||||
<LI><a href="#Quickstart">Quickstart guide for the impatient.</a>
|
||||
<LI><a href="#Details">Details of the Configuration Script</a>
|
||||
<!-- <LI><a href="UsingC++.html">Using the C++ interface</a> -->
|
||||
<LI><a href="#ConfigOptions">Important Configure Options</a>
|
||||
<LI><a href="#EnvVariables">Important Environment Variables</a>
|
||||
</UL>
|
||||
|
||||
<hr>
|
||||
<a name="Quickstart">
|
||||
<h2>Quickstart <i>for the impatient</i></h2>
|
||||
</a>
|
||||
|
||||
<OL>
|
||||
|
||||
<LI><b>Configure</b>:<br>
|
||||
For the serial implementation
|
||||
<pre>
|
||||
./configure
|
||||
</pre>
|
||||
For the parallel implementation configure with
|
||||
<pre>
|
||||
./configure --enable-parallel
|
||||
</pre>
|
||||
If you also want to build fortran bindings, add the
|
||||
<code>--enable-fortran</code> flag to the configure line.
|
||||
</LI><p>
|
||||
|
||||
<LI><b>Make the Library</b>:<br>
|
||||
Type <code>make</code> to build the library. The libraries are
|
||||
named accordingly.
|
||||
<UL>
|
||||
<LI>libH5Part.a: Serial C/C++ Library.</LI>
|
||||
<LI>libpH5Part.a: Parallel C/C++ library.</LI>
|
||||
<LI>libH5PartF.a: Serial F77/F90 library.</LI>
|
||||
<LI>libpH5PartF.a: Parallel F77/F90 library.</LI>
|
||||
</UL>
|
||||
</LI><p>
|
||||
|
||||
<LI><b>Make Regression Tests and Examples</b>:<br>
|
||||
Just type <code>make tests</code> to build regression tests
|
||||
and/or example programs for H5Part. These tests are
|
||||
<UL>
|
||||
<LI>H5PartF: Fortran example (only build if --enable-fortran
|
||||
is specified).</LI>
|
||||
<LI>H5PartFpar: Parallel Fortran example (only built if both
|
||||
--enable-fortran and --enable-parallel are specified).</LI>
|
||||
<LI>H5PartTest: Serial C example. This test writes a sample
|
||||
datafile and then reopens it for reading. It demonstrates
|
||||
the most basic reading/writing capabilities.</LI>
|
||||
<LI>H5PartTestP: Parallel C example (only built if
|
||||
--enable-parallel is specified). This program only works
|
||||
as an MPI/parallel program.</LI>
|
||||
<LI>Bench: This program will only be built if
|
||||
--enable-parallel is specified. It compares the
|
||||
performance of raw binary
|
||||
I/O (one file per processor), raw binary MPI-IO based
|
||||
parallel I/O to a single file, and the parallel H5Part/HDF5 to
|
||||
a single file. Generally, H5Part should be very close to the
|
||||
MPI-IO implementation in terms of performance, but slower
|
||||
than one-file-per-processor. If HDF5 is slower the
|
||||
MPI-IO, it would indicate that some performance tuning
|
||||
will be required for your platform (contact us, and we will
|
||||
see what we can do!).</LI>
|
||||
</UL>
|
||||
</LI><p>
|
||||
<LI><b>Building Your Own Programs</b>:<br>
|
||||
There are many different subtleties to linking on various
|
||||
computer platforms, but typically one does the following.
|
||||
<UL>
|
||||
<LI>C/C++ Serial:
|
||||
<br><code>#include
|
||||
< H5Part.h > </code> into your
|
||||
source file.
|
||||
<br><code>$CC -I<i>path_to_H5Part.h</i>
|
||||
-I<i>path_to_hdf5.h</i> -o outfile
|
||||
MyFile.cc -L<i>path_to_libH5Part.a</i> -lH5Part
|
||||
-L<i>path_to_libhdf5</i> -lhdf5 -lz <i>-lsz</i></code>
|
||||
</LI>
|
||||
<LI>C/C++ Parallel:
|
||||
<br><code>#include
|
||||
< H5Part.h > </code> into your
|
||||
source file.
|
||||
<br><code>$MPICC -I<i>path_to_H5Part.h</i>
|
||||
-I<i>path_to_hdf5.h</i> -DPARALLEL_IO
|
||||
-DH5_HAVE_PARALLEL -o outfile
|
||||
MyFile.cc -L<i>path_to_libH5Part.a</i> -lH5Part
|
||||
-L<i>path_to_libhdf5</i> -lhdf5 -lz <i>-lsz</i></code>
|
||||
</LI>
|
||||
|
||||
<LI>Fortran Serial:
|
||||
<br><code>include
|
||||
'H5Part.inc'</code> into your
|
||||
source file.
|
||||
<br><code>$FC -I<i>path_to_H5Part.h</i>
|
||||
-I<i>path_to_hdf5.h</i> -o outfile
|
||||
MyFile.cc -L<i>path_to_libH5PartF.a</i> -lH5PartF
|
||||
-L<i>path_to_libhdf5</i> -lhdf5 -lz <i>-lsz</i> -lc</code>
|
||||
</LI>
|
||||
<LI>Fortran Parallel:
|
||||
<br><code>include
|
||||
'H5Part.inc'</code> into your
|
||||
source file.
|
||||
<br><code>$MPIF90 -I<i>path_to_H5Part.h</i>
|
||||
-o outfile
|
||||
MyFile.cc -L<i>path_to_libpH5PartF.a</i> -lpH5PartF
|
||||
-L<i>path_to_libhdf5</i> -lhdf5 -lz <i>-lsz</i> -lc</code>
|
||||
</LI><p>
|
||||
</UL>
|
||||
|
||||
</OL>
|
||||
|
||||
<hr>
|
||||
|
||||
<a name="Details">
|
||||
<h1>Details for H5Part Configure and Build</h1>
|
||||
</a>
|
||||
|
||||
|
||||
<a name="ConfigOptions">
|
||||
<h2>Configure Options</h2>
|
||||
</a>
|
||||
H5Part uses GNU Autoconf to generate a Makefile from the makefile
|
||||
template called <code>Makefile.in</code>.
|
||||
The configure script pays attention to the following
|
||||
configure options;<p>
|
||||
|
||||
<UL>
|
||||
<LI><b>--prefix=PREFIX</b> Install files in PREFIX</LI>
|
||||
<LI><b>--enable-fortran</b> By default H5part will make no attempt to
|
||||
build Fortran bindings. If you add the
|
||||
<code>--enable-fortran</code> flag to the ./configure line, it
|
||||
will create a small test program to determine how to generate
|
||||
the fortran bindings and then create a library that includes
|
||||
those bindings. You may need to set the fortran compiler by
|
||||
setting the <code>FC</code> environment variable in your shell.</LI>
|
||||
<LI><b>--enable-parallel</b> The version of HDF5 that you build for
|
||||
Parallel I/O differs from the library you would build for
|
||||
serial I/O. Consequently, the H5Part libraries must be built
|
||||
specifically for the kind of I/O you have in mind (parallel or
|
||||
serial). The configure script will attempt to find an
|
||||
<code>mpicc</code> if it is available. If no
|
||||
<code>mpicc</code> is available it will use the regular
|
||||
C-compiler and will try to locate the location of the MPI
|
||||
include files and libraries. You can assist the configure
|
||||
program in its search by setting the <code>MPIROOT</code>
|
||||
environment variable.</LI>
|
||||
<LI><b>--enable-tools</b> Builds the currently available tools
|
||||
<br>
|
||||
<b>h5pAttrib</b>, an inspection tool that prints the number of timesteps in a file
|
||||
the file attributes, the step attributes, the dataset names and their values.
|
||||
<br>
|
||||
<b>h5pToGNUplot</b>, a converter to two column ASCII format to load in GNUplot.
|
||||
</LI>
|
||||
<LI><b>--enable-python</b><font color=red> Under construction</font> Option to build python bindings. It has not been tested.
|
||||
</LI>
|
||||
<LI><b>--help</b> Prints configure options.
|
||||
</LI>
|
||||
</UL>
|
||||
<p>
|
||||
|
||||
<a name="MakeOptions">
|
||||
<h2>Make Options</h2>
|
||||
</a>
|
||||
|
||||
<UL>
|
||||
<LI>make</LI>builds the libraries and test programs
|
||||
<LI>make install</LI>builds and installs
|
||||
<LI>make clean</LI>removes extraneous object files
|
||||
<LI>make distclean</LI>returns configuration to unconfigured state
|
||||
</UL>
|
||||
|
||||
<a name="EnvVariables">
|
||||
<h2>Environment Variables for Configure</h2>
|
||||
</a>
|
||||
The
|
||||
configuration script is of limited intelligence. Sometimes, you
|
||||
have to define the following environment variables in order to
|
||||
help it on its way. You will often only need to tell it where to
|
||||
find the HDF5 libraries (<code>H5ROOT</code> for serial or
|
||||
<code>PHDF5ROOT</code> for parallel builds). All of these
|
||||
environment variables can also be overidden in the Makefile that
|
||||
is generated by the autoconfigure script.
|
||||
The configure script pays attention to the following
|
||||
environment variables;
|
||||
<p>
|
||||
|
||||
<UL>
|
||||
<LI><b>CC</b>: Use the <code>CC</code> environment variable to tell the
|
||||
configure script where to find the C compiler. You can
|
||||
also directly modify this variable in the
|
||||
<code>Makefile</code> that is generated by the autoconfigure</LI>
|
||||
<LI><b>CXX</b>: Use the <code>CXX</code> environment variable to tell the
|
||||
configure script where to find the C++ compiler. You can
|
||||
also directly modify this variable in the
|
||||
<code>Makefile</code> that is generated by the autoconfigure</LI>
|
||||
<LI><b>FC</b>: Use the <code>FC</code> environment variable to tell the
|
||||
configure script where to find the fortran compiler. You can
|
||||
also directly modify this variable in the
|
||||
<code>Makefile</code> that is generated by the autoconfigure</LI>
|
||||
<LI><b>MPICC</b>: If you are building for parallel C I/O, then it is
|
||||
useful to tell the configure script where to find the
|
||||
<code>mpicc</code> script. Normally, <code>mpicc</code> is
|
||||
merely a wrapper script for a build using a regular C-compiler.
|
||||
If no <code>mpicc</code> is available, then the
|
||||
<code>configure</code> script will attempt to locate the mpi
|
||||
header files and libraries. In that case, it may be useful to
|
||||
define the <code>MPI_HOME</code> environment variable.</LI>
|
||||
<LI><b>MPICXX</b>If you are building for parallel C++</LI>
|
||||
<LI><b>MPIFC</b>: If you are building for parallel Fortran I/O, then it is
|
||||
useful to tell the configure script where to find the parallel fortran compiler.
|
||||
<LI><b>MPIROOT</b>: Set this environment variable to help the
|
||||
configure script to locate the MPI libraries that should be
|
||||
used to build the parallel version of the libraries. This
|
||||
variable will be ignored if configured only to build the
|
||||
serial implementation of the library.</LI>
|
||||
<LI><b>HDF5ROOT</b>: Find the path to your serial HDF5 installation. If you
|
||||
are building the serial version of H5part, then you should set
|
||||
the <code>PHDF5ROOT</code> environment variable.</LI>
|
||||
</UL><p>
|
||||
|
||||
<h3>Common compiler environemt variables for NERSC platforms</h3>
|
||||
<UL>
|
||||
<LI><b>DaVinci</b>: Linux ia64 </LI>
|
||||
CC=icc CXX=icc F90=ifort MPICC=icc MPIFC=ifort MPILIB=-L/usr/lib/ -lmpi MPIINC=-I/usr/include
|
||||
<LI><b>Bassi</b>: AIX</LI>
|
||||
CC=cc_r CXX=cc_r FC=xlf_r MPICC=mpcc_r MPICXX=mpcc_r MPIFC=mpxlf_r
|
||||
<LI><b>Jacquard</b>: Linux x86_64</LI>
|
||||
CC=pathcc CXX=pathCC FC=pathf90 MPICC=mpicc MPICXX=mpicxx MPIFC=mpif90
|
||||
<LI><b>Starsky.lbl.gov:</b> (Darwin) PowerPC</LI>
|
||||
CC=gcc CXX=g++ FC=g95
|
||||
</UL>
|
||||
<br>
|
||||
NOTE: You might need to set the MPI library path (MPILIB) and MPI includes (MPIIINC) if they are in non standard places. For example: <br>
|
||||
MPILIB=-L/usr/lpp/ppe.poe/lib -lmpi_r MPIINC=-I/usr/lpp/ppe.poe/include/thread
|
||||
<h3>How to set the variables for configure:</h3>
|
||||
It is very simple just call env with the variables together with configure. Notice the quotes in MPILIB.
|
||||
<pre>
|
||||
% env CC=icc CXX=icc F90=ifort MPICC=icc MPILIB=-L/usr/lib/ -lmpi MPIINC=-I/usr/include ./configure (configure options follow here)
|
||||
</pre>
|
||||
In the worst case, you can edit the <code>src/Makefile.am</code> and <code>test/Makefile.am</code> as
|
||||
needed to perform the proper build.
|
||||
</div>
|
||||
|
||||
Executable
+68
@@ -0,0 +1,68 @@
|
||||
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
|
||||
<html>
|
||||
<head>
|
||||
<title>Put your title here!!</title>
|
||||
<meta http-equiv="Content-Type" content="text/html; charset=us-ascii">
|
||||
<meta name="keywords" content="scientific visualization">
|
||||
<meta name="sitemap" content="put a brief descriptive phrase here that will show up in the site map:foo">
|
||||
|
||||
<!--#include virtual="/include/topIncludes.html"-->
|
||||
|
||||
<div id="maincenter">
|
||||
|
||||
|
||||
<head>
|
||||
<title>Building HDF5</title>
|
||||
</head>
|
||||
|
||||
<body bgcolor="#F0F0F0">
|
||||
<font face="arial,helvetica" size="+2" color="#555588"><h2>Building H5Part</h2></font>
|
||||
<UL>
|
||||
<LI><a href="#ConfigOptions">Configure Options</a>
|
||||
<LI><a href="#EnvVariables">Important Environment Variables</a>
|
||||
</UL>
|
||||
|
||||
<hr>
|
||||
<a name="ConfigOptions">
|
||||
<h2>Configure options</h2></a>
|
||||
</a>
|
||||
To set the installation path configure with
|
||||
<pre>
|
||||
./configure --prefix=your hdf5 installation full path, e.g.--prefix=/usr/local/hdf5
|
||||
</pre>
|
||||
For the serial implementation configure with
|
||||
<pre>
|
||||
./configure
|
||||
</pre>
|
||||
For the parallel implementation configure with
|
||||
<pre>
|
||||
./configure --enable-parallel
|
||||
</pre>
|
||||
To enable shared objects configure with
|
||||
<pre>
|
||||
./configure --enable-shared
|
||||
</pre>
|
||||
<a name="EnvVariables">
|
||||
<h2>Environment Variables</h2></a>
|
||||
</a>
|
||||
To add HDF5 to your PATH and LD_LIBRARY_PATH edit your
|
||||
.tcshr, or .cshrc depending on the shell you are using and add
|
||||
<pre>
|
||||
setenv HDF5 "your hdf5 installation full path"
|
||||
setenv PATH ${PATH}:${HDF5}/bin
|
||||
setenv LD_LIBRARY_PATH ${LD_LIBRARY_PATH}:${HDF5}/lib
|
||||
</pre>
|
||||
if you are using bash, add to your .bashrc
|
||||
<pre>
|
||||
export HDF5="your hdf5 installation full path"
|
||||
export PATH=$PATH:${HDF5}/bin
|
||||
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:${HDF5}/lib
|
||||
</pre>
|
||||
|
||||
Open a new terminal or do a
|
||||
source .tcshr (.cshrc, .bashrc) in the one that you are using.
|
||||
|
||||
You can <a href="http://vis.lbl.gov/Research/AcceleratorSAPP/Downloading.html">continue <a/>downloading and installing H5Part.
|
||||
</div>
|
||||
|
||||
<!--#include virtual="/include/dateFooter.html"-->
|
||||
@@ -0,0 +1,48 @@
|
||||
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
|
||||
<html>
|
||||
<head>
|
||||
<title>Put your title here!!</title>
|
||||
<meta http-equiv="Content-Type" content="text/html; charset=us-ascii">
|
||||
<meta name="keywords" content="scientific visualization">
|
||||
<meta name="sitemap" content="put a brief descriptive phrase here that will show up in the site map:foo">
|
||||
|
||||
<!--#include virtual="/include/topIncludes.html"-->
|
||||
|
||||
<div id="maincenter">
|
||||
<head>
|
||||
<title>Downloading H5Part</title>
|
||||
</head>
|
||||
|
||||
<body bgcolor="#F0F0F0">
|
||||
<font face="arial,helvetica" size="+2" color="#555588"><h2>Downloading H5Part</h2></font>
|
||||
<UL>
|
||||
<LI><a href="#svnano">Subversion access.</a>
|
||||
</UL>
|
||||
<hr>
|
||||
<a name="svnano">
|
||||
<h2>Subversion access</h2>
|
||||
</a>
|
||||
|
||||
<LI><b>Anonymous via. Savannah</b>:<br>
|
||||
Use svn from <a href="http://subversion.tigris.org"> tigris </a>
|
||||
<pre>
|
||||
svn checkout svn+ssh://svn@savannah.psi.ch/afs/psi.ch/project/amas/svn/root/amas/H5Part/ .
|
||||
</pre>
|
||||
Password is svn.
|
||||
<LI><b>Using AFS</b>:<br>
|
||||
You need AFS (openAFS) and must have an AFS-Account at PSI which in consequence gives you
|
||||
the needed access right.
|
||||
</LI><p>
|
||||
<pre>
|
||||
svn checkout file:///afs/psi.ch/project/amas/svn/root/amas/H5Part/ .
|
||||
</pre>
|
||||
In case of trouble please contact the person mentioned at the bottom of this page.
|
||||
<hr>
|
||||
<address><a href="mailto:andreas.adelmann@psi.ch">Andreas Adelmann</a></address>
|
||||
<!-- Created: March 7 12:52:52 PST 2005 -->
|
||||
<!-- hhmts start -->
|
||||
Last modified: Mon Jan 9 22:18:55 CET 2006
|
||||
<!-- hhmts end -->
|
||||
</div>
|
||||
|
||||
<!--#include virtual="/include/dateFooter.html"-->
|
||||
+103
-2255
File diff suppressed because it is too large
Load Diff
File diff suppressed because it is too large
Load Diff
@@ -1,77 +0,0 @@
|
||||
NumLevels: 2
|
||||
|
||||
NumVerticesOnLevel: 11 20 29
|
||||
|
||||
Vertices:
|
||||
1 0.0 0.0
|
||||
2 60.0 -70.0
|
||||
3 90.0 -10.0
|
||||
4 140.0 -70.0
|
||||
5 180.0 -10.0
|
||||
6 240.0 -60.0
|
||||
7 220.0 60.0
|
||||
8 140.0 90.0
|
||||
9 200.0 120.0
|
||||
10 130.0 150.0
|
||||
11 50.0 80.0
|
||||
12 115.0 40.0
|
||||
13 95.0 85.0
|
||||
14 70.0 35.0
|
||||
15 160.0 -40.0
|
||||
16 135.0 -10.0
|
||||
17 115.0 -40.0
|
||||
18 200.0 25.0
|
||||
19 180.0 75.0
|
||||
20 160.0 40.0
|
||||
|
||||
21 125.0 15.0
|
||||
22 112.5 -10.0
|
||||
23 102.5 15.0
|
||||
24 147.5 15.0
|
||||
25 137.5 40.0
|
||||
26 150.0 65.0
|
||||
27 127.5 65.0
|
||||
28 117.5 87.5
|
||||
29 105.0 62.5
|
||||
|
||||
NumElemsOnLevel: 12 24 36
|
||||
NumElems: 12 28 44
|
||||
|
||||
Elements:
|
||||
ID PID CID VertexIDs Adj Translation Tbl (dim num lvls - 1)
|
||||
1 -1 -1 1 2 3 2 11 -1 1
|
||||
2 -1 -1 2 3 4 3 -1 1 2
|
||||
3 -1 12 3 4 5 4 12 2 -1
|
||||
4 -1 -1 4 5 6 5 -1 3 3
|
||||
5 -1 -1 5 7 6 -1 4 6 4
|
||||
6 -1 17 8 5 7 5 7 12 -1
|
||||
7 -1 -1 8 9 7 -1 6 8 5
|
||||
8 -1 -1 10 8 9 7 -1 9 6
|
||||
9 -1 -1 11 10 8 8 10 -1 7
|
||||
10 -1 25 11 3 8 12 9 11 -1
|
||||
11 -1 -1 1 11 3 10 1 -1 8
|
||||
12 -1 21 3 8 5 6 3 10 -1
|
||||
13 3 -1 3 14 13 16 21 2 9
|
||||
14 3 -1 14 4 12 4 16 2 10
|
||||
15 3 -1 13 12 5 4 23 16 11
|
||||
16 3 -1 14 13 12 15 14 13 12
|
||||
17 6 -1 8 17 16 20 5 22 13
|
||||
18 6 -1 17 5 15 5 20 23 14
|
||||
19 6 -1 16 15 7 5 7 20 15
|
||||
20 6 -1 17 16 15 19 18 17 16
|
||||
21 12 -1 3 18 13 24 13 26 17
|
||||
22 12 -1 18 8 17 17 24 27 18
|
||||
23 12 -1 13 17 5 18 15 24 19
|
||||
24 12 -1 18 13 17 23 22 21 20
|
||||
25 10 -1 11 20 19 28 9 11 21
|
||||
26 10 -1 20 3 18 21 28 11 22
|
||||
27 10 -1 19 18 8 22 9 28 23
|
||||
28 10 -1 20 3 18 27 26 25 24
|
||||
|
||||
3,0 3,1 4,2 2,3 16,4
|
||||
|
||||
1 2 -1 3 4
|
||||
|
||||
1 2 3
|
||||
1 3 6
|
||||
2 11 1 13 14
|
||||
@@ -1,107 +0,0 @@
|
||||
# vtk DataFile Version 2.0
|
||||
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
|
||||
ASCII
|
||||
DATASET UNSTRUCTURED_GRID
|
||||
|
||||
POINTS 17 DOUBLE
|
||||
-1 0 0
|
||||
1 0 0
|
||||
0 1 0
|
||||
0 0 1
|
||||
0 -1 0
|
||||
-0.5 0 0.5
|
||||
-0.5 0.5 0
|
||||
0 0 0
|
||||
0 0.5 0.5
|
||||
0.5 0 0.5
|
||||
0.5 0.5 0
|
||||
-0.75 0 0.25
|
||||
-0.75 0.25 0
|
||||
-0.5 0 0
|
||||
-0.5 0.25 0.25
|
||||
-0.25 0 0.25
|
||||
-0.25 0.25 0
|
||||
|
||||
CELLS 18 90
|
||||
4 0 3 2 1
|
||||
4 0 4 3 1
|
||||
4 0 5 6 7
|
||||
4 5 3 8 9
|
||||
4 6 8 2 10
|
||||
4 7 9 10 1
|
||||
4 5 6 7 9
|
||||
4 5 6 8 9
|
||||
4 6 7 9 10
|
||||
4 6 8 9 10
|
||||
4 0 11 12 13
|
||||
4 11 5 14 15
|
||||
4 12 14 6 16
|
||||
4 13 15 16 7
|
||||
4 11 12 13 15
|
||||
4 11 12 14 15
|
||||
4 12 13 15 16
|
||||
4 12 14 15 16
|
||||
|
||||
CELL_TYPES 18
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
|
||||
POINT_DATA 17
|
||||
SCALARS vertex_id int 1
|
||||
LOOKUP_TABLE default
|
||||
0
|
||||
1
|
||||
2
|
||||
3
|
||||
4
|
||||
5
|
||||
6
|
||||
7
|
||||
8
|
||||
9
|
||||
10
|
||||
11
|
||||
12
|
||||
13
|
||||
14
|
||||
15
|
||||
16
|
||||
|
||||
CELL_DATA 18
|
||||
SCALARS cell_attribute_data int 1
|
||||
LOOKUP_TABLE default
|
||||
0
|
||||
1
|
||||
2
|
||||
3
|
||||
4
|
||||
5
|
||||
6
|
||||
7
|
||||
8
|
||||
9
|
||||
10
|
||||
11
|
||||
12
|
||||
13
|
||||
14
|
||||
15
|
||||
16
|
||||
17
|
||||
|
||||
@@ -1,59 +0,0 @@
|
||||
# vtk DataFile Version 2.0
|
||||
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
|
||||
ASCII
|
||||
DATASET UNSTRUCTURED_GRID
|
||||
|
||||
POINTS 17 DOUBLE
|
||||
-1 0 0
|
||||
1 0 0
|
||||
0 1 0
|
||||
0 0 1
|
||||
0 -1 0
|
||||
-0.5 0 0.5
|
||||
-0.5 0.5 0
|
||||
0 0 0
|
||||
0 0.5 0.5
|
||||
0.5 0 0.5
|
||||
0.5 0.5 0
|
||||
-0.75 0 0.25
|
||||
-0.75 0.25 0
|
||||
-0.5 0 0
|
||||
-0.5 0.25 0.25
|
||||
-0.25 0 0.25
|
||||
-0.25 0.25 0
|
||||
|
||||
CELLS 2 10
|
||||
4 0 3 2 1
|
||||
4 0 4 3 1
|
||||
|
||||
CELL_TYPES 2
|
||||
10
|
||||
10
|
||||
|
||||
POINT_DATA 17
|
||||
SCALARS vertex_id int 1
|
||||
LOOKUP_TABLE default
|
||||
0
|
||||
1
|
||||
2
|
||||
3
|
||||
4
|
||||
5
|
||||
6
|
||||
7
|
||||
8
|
||||
9
|
||||
10
|
||||
11
|
||||
12
|
||||
13
|
||||
14
|
||||
15
|
||||
16
|
||||
|
||||
CELL_DATA 2
|
||||
SCALARS cell_attribute_data int 1
|
||||
LOOKUP_TABLE default
|
||||
0
|
||||
1
|
||||
|
||||
@@ -1,80 +0,0 @@
|
||||
# vtk DataFile Version 2.0
|
||||
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
|
||||
ASCII
|
||||
DATASET UNSTRUCTURED_GRID
|
||||
|
||||
POINTS 17 DOUBLE
|
||||
-1 0 0
|
||||
1 0 0
|
||||
0 1 0
|
||||
0 0 1
|
||||
0 -1 0
|
||||
-0.5 0 0.5
|
||||
-0.5 0.5 0
|
||||
0 0 0
|
||||
0 0.5 0.5
|
||||
0.5 0 0.5
|
||||
0.5 0.5 0
|
||||
-0.75 0 0.25
|
||||
-0.75 0.25 0
|
||||
-0.5 0 0
|
||||
-0.5 0.25 0.25
|
||||
-0.25 0 0.25
|
||||
-0.25 0.25 0
|
||||
|
||||
CELLS 9 45
|
||||
4 0 4 3 1
|
||||
4 0 5 6 7
|
||||
4 5 3 8 9
|
||||
4 6 8 2 10
|
||||
4 7 9 10 1
|
||||
4 5 6 7 9
|
||||
4 5 6 8 9
|
||||
4 6 7 9 10
|
||||
4 6 8 9 10
|
||||
|
||||
CELL_TYPES 9
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
|
||||
POINT_DATA 17
|
||||
SCALARS vertex_id int 1
|
||||
LOOKUP_TABLE default
|
||||
0
|
||||
1
|
||||
2
|
||||
3
|
||||
4
|
||||
5
|
||||
6
|
||||
7
|
||||
8
|
||||
9
|
||||
10
|
||||
11
|
||||
12
|
||||
13
|
||||
14
|
||||
15
|
||||
16
|
||||
|
||||
CELL_DATA 9
|
||||
SCALARS cell_attribute_data int 1
|
||||
LOOKUP_TABLE default
|
||||
0
|
||||
1
|
||||
2
|
||||
3
|
||||
4
|
||||
5
|
||||
6
|
||||
7
|
||||
8
|
||||
|
||||
@@ -1,101 +0,0 @@
|
||||
# vtk DataFile Version 2.0
|
||||
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
|
||||
ASCII
|
||||
DATASET UNSTRUCTURED_GRID
|
||||
|
||||
POINTS 17 DOUBLE
|
||||
-1 0 0
|
||||
1 0 0
|
||||
0 1 0
|
||||
0 0 1
|
||||
0 -1 0
|
||||
-0.5 0 0.5
|
||||
-0.5 0.5 0
|
||||
0 0 0
|
||||
0 0.5 0.5
|
||||
0.5 0 0.5
|
||||
0.5 0.5 0
|
||||
-0.75 0 0.25
|
||||
-0.75 0.25 0
|
||||
-0.5 0 0
|
||||
-0.5 0.25 0.25
|
||||
-0.25 0 0.25
|
||||
-0.25 0.25 0
|
||||
|
||||
CELLS 16 80
|
||||
4 0 4 3 1
|
||||
4 5 3 8 9
|
||||
4 6 8 2 10
|
||||
4 7 9 10 1
|
||||
4 5 6 7 9
|
||||
4 5 6 8 9
|
||||
4 6 7 9 10
|
||||
4 6 8 9 10
|
||||
4 0 11 12 13
|
||||
4 11 5 14 15
|
||||
4 12 14 6 16
|
||||
4 13 15 16 7
|
||||
4 11 12 13 15
|
||||
4 11 12 14 15
|
||||
4 12 13 15 16
|
||||
4 12 14 15 16
|
||||
|
||||
CELL_TYPES 16
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
|
||||
POINT_DATA 17
|
||||
SCALARS vertex_id int 1
|
||||
LOOKUP_TABLE default
|
||||
0
|
||||
1
|
||||
2
|
||||
3
|
||||
4
|
||||
5
|
||||
6
|
||||
7
|
||||
8
|
||||
9
|
||||
10
|
||||
11
|
||||
12
|
||||
13
|
||||
14
|
||||
15
|
||||
16
|
||||
|
||||
CELL_DATA 16
|
||||
SCALARS cell_attribute_data int 1
|
||||
LOOKUP_TABLE default
|
||||
1
|
||||
3
|
||||
4
|
||||
5
|
||||
6
|
||||
7
|
||||
8
|
||||
9
|
||||
10
|
||||
11
|
||||
12
|
||||
13
|
||||
14
|
||||
15
|
||||
16
|
||||
17
|
||||
|
||||
@@ -1,13 +0,0 @@
|
||||
12 14
|
||||
2 11
|
||||
1 3
|
||||
2 4 12
|
||||
3 5
|
||||
4 6
|
||||
5 7 12
|
||||
6 8
|
||||
7 9
|
||||
8 10
|
||||
9 11 12
|
||||
1 10
|
||||
3 6 10
|
||||
@@ -1,12 +0,0 @@
|
||||
0
|
||||
1
|
||||
1
|
||||
1
|
||||
1
|
||||
1
|
||||
0
|
||||
0
|
||||
0
|
||||
0
|
||||
0
|
||||
1
|
||||
@@ -1,12 +0,0 @@
|
||||
1
|
||||
1
|
||||
2
|
||||
2
|
||||
2
|
||||
0
|
||||
0
|
||||
0
|
||||
0
|
||||
1
|
||||
1
|
||||
2
|
||||
@@ -1,49 +0,0 @@
|
||||
24 35
|
||||
%1
|
||||
2 8
|
||||
%2
|
||||
1 9 10
|
||||
%3
|
||||
4 10 11
|
||||
%4
|
||||
3 14 15
|
||||
%5
|
||||
6 13 15
|
||||
%6
|
||||
5 7
|
||||
%7
|
||||
6 21 23
|
||||
%8
|
||||
1 21 22
|
||||
%9
|
||||
2 12 17
|
||||
%10
|
||||
2 3 12
|
||||
%11
|
||||
3 12 19
|
||||
%12
|
||||
9 10 11
|
||||
%13
|
||||
5 16 18
|
||||
%14
|
||||
4 16 19
|
||||
%15
|
||||
4 5 16
|
||||
%16
|
||||
13 14 15
|
||||
%17
|
||||
9 20 22
|
||||
%18
|
||||
13 20 23
|
||||
%19
|
||||
11 14 20
|
||||
%20
|
||||
17 18 19
|
||||
%21
|
||||
7 8 24
|
||||
%22
|
||||
8 17 24
|
||||
%23
|
||||
7 18 24
|
||||
%24
|
||||
21 22 23
|
||||
@@ -1,24 +0,0 @@
|
||||
1
|
||||
1
|
||||
0
|
||||
0
|
||||
0
|
||||
0
|
||||
1
|
||||
1
|
||||
1
|
||||
1
|
||||
0
|
||||
1
|
||||
0
|
||||
0
|
||||
0
|
||||
0
|
||||
1
|
||||
0
|
||||
0
|
||||
0
|
||||
1
|
||||
1
|
||||
1
|
||||
1
|
||||
@@ -1,13 +0,0 @@
|
||||
12 1
|
||||
1 2 3
|
||||
2 3 4
|
||||
3 4 6
|
||||
4 5 6
|
||||
5 6 7
|
||||
6 7 8
|
||||
7 8 11
|
||||
8 10 11
|
||||
8 9 10
|
||||
3 8 9
|
||||
1 3 9
|
||||
3 6 8
|
||||
@@ -1,12 +0,0 @@
|
||||
1
|
||||
1
|
||||
1
|
||||
1
|
||||
0
|
||||
0
|
||||
0
|
||||
0
|
||||
0
|
||||
0
|
||||
1
|
||||
1
|
||||
@@ -1,12 +0,0 @@
|
||||
11 22
|
||||
2 3 9
|
||||
1 3 4
|
||||
1 2 4 6 8 9
|
||||
2 3 6 5
|
||||
4 6 7
|
||||
3 4 5 7 8
|
||||
5 6 8 11
|
||||
6 7 11 10 9 3
|
||||
8 10 3 1
|
||||
8 11 9
|
||||
7 8 10
|
||||
@@ -1,11 +0,0 @@
|
||||
1
|
||||
1
|
||||
1
|
||||
1
|
||||
1
|
||||
0
|
||||
0
|
||||
0
|
||||
0
|
||||
0
|
||||
0
|
||||
@@ -1,41 +0,0 @@
|
||||
20 43
|
||||
%1
|
||||
2 3 11
|
||||
%2
|
||||
1 3 4
|
||||
%3
|
||||
1 2 14 13 18 20
|
||||
%4
|
||||
2 14 12 6
|
||||
%5
|
||||
12 6 15 17 13
|
||||
%6
|
||||
4 5 7
|
||||
%7
|
||||
6 15 16 9
|
||||
%8
|
||||
9 10 19 18 17 16
|
||||
%9
|
||||
7 8 10
|
||||
%10
|
||||
8 9 11
|
||||
%11
|
||||
1 20 19 10
|
||||
%12
|
||||
4 14 13 5
|
||||
%13
|
||||
3 14 12 5 17 18
|
||||
%14
|
||||
3 13 12 4
|
||||
%15
|
||||
5 17 17 7
|
||||
%16
|
||||
7 8 17 15
|
||||
%17
|
||||
5 15 16 8 18 13
|
||||
%18
|
||||
3 13 17 8 19 20
|
||||
%19
|
||||
8 11 20 18
|
||||
%20
|
||||
3 18 19 11
|
||||
@@ -1,20 +0,0 @@
|
||||
1
|
||||
1
|
||||
1
|
||||
0
|
||||
0
|
||||
0
|
||||
0
|
||||
1
|
||||
1
|
||||
1
|
||||
1
|
||||
0
|
||||
0
|
||||
0
|
||||
0
|
||||
0
|
||||
0
|
||||
1
|
||||
1
|
||||
1
|
||||
-171
@@ -1,171 +0,0 @@
|
||||
/*!
|
||||
\mainpage H5hut: A High-Performance I/O Library for Particle-based Simulations
|
||||
|
||||
Particle-based simulations running on large high-performance computing systems
|
||||
over many time steps can generate an enormous amount of particle- and
|
||||
field-based data for post-processing and analysis. Achieving high-performance
|
||||
I/O for this data, effectively managing it on disk, and interfacing it with
|
||||
analysis and visualization tools can be challenging, especially for domain
|
||||
scientists who do not have I/O and data management expertise. We present the
|
||||
H5hut library, an implementation of several data models for particle-based
|
||||
simulations that encapsulates the complexity of HDF5 and is simple to use, yet
|
||||
does not compromise performance.
|
||||
|
||||
Developers:
|
||||
|
||||
<UL>
|
||||
<LI> Andreas Adelmann (PSI) </LI>
|
||||
<LI> Achim Gsell (PSI) </LI>
|
||||
<LI> Mark Howison (NERSC/LBNL) </LI>
|
||||
<LI> Prabhat (NERSC/LBNL) </LI>
|
||||
<LI> Wes Bethel (NERSC/LBNL) </LI>
|
||||
</UL>
|
||||
|
||||
Previous developers:
|
||||
|
||||
<UL>
|
||||
<LI> Benedikt Oswald (PSI) </LI>
|
||||
<LI> Cristina Siegerist (NERSC/LBNL)</LI>
|
||||
<LI> John Shalf (NERSC/LBNL)</LI>
|
||||
</UL>
|
||||
|
||||
For more information, please contact the
|
||||
<a href="mailto:h5part@lists.psi.ch">h5part</a> mailing list.
|
||||
|
||||
\defgroup c_api C API
|
||||
@{
|
||||
\note The C API is implemented with '\c static \c inline' functions to minimize overhead.
|
||||
\defgroup h5_c_api H5
|
||||
@{
|
||||
\defgroup h5_file File interface
|
||||
|
||||
In this section we document the interface for accessing H5hut files.
|
||||
|
||||
\defgroup h5_model Setting up the data model
|
||||
|
||||
The fundamental data model of H5hut is pretty simple. There
|
||||
are (time-)steps to group data, that's it. In this section we
|
||||
document the interface to these (time-)steps.
|
||||
|
||||
\defgroup h5_file_attribs File attributes interface
|
||||
|
||||
File attributes are small datasets that can be used to
|
||||
describe specific properties of a file. The H5hut API provides
|
||||
functions to attach (write), read and inquire file attributes.
|
||||
|
||||
\defgroup h5_step_attribs Step attributes interface
|
||||
|
||||
Step attributes are similar to file attributes but are
|
||||
attached to (time-)steps. They can be used to describe
|
||||
specific properties of a specific step. The H5hut API provides
|
||||
functions to attach (write), read and inquire step attributes.
|
||||
|
||||
\defgroup h5_attach Attaching files
|
||||
|
||||
Sometimes it is required (or at least useful) to attach
|
||||
additional information to H5hut files. H5hut provides
|
||||
functions to attach other files to H5hut files. The attached
|
||||
files can be of any type.
|
||||
|
||||
\defgroup h5_log Controlling verbosity level
|
||||
|
||||
Controlling the verbosity level of H5hut. By default only
|
||||
error messages are printed. For debugging it might be helpful
|
||||
to increase the verbosity level.
|
||||
|
||||
\defgroup h5_debug Controlling debug output
|
||||
|
||||
Debug output mainly intended for developers.
|
||||
|
||||
\defgroup h5_error Error handling interface
|
||||
|
||||
H5hut comes with two error handler. The default error handler
|
||||
prints an error message (which can be suppressed by setting
|
||||
the verbosity level to \c 0), sets an internal error number
|
||||
and returns to the calling program with the value \c
|
||||
H5_FAILURE. It is up to the programmer to handle the error
|
||||
properly. In certain use-cases it make sense just to abort the
|
||||
program, so no additional error handling is needed. H5hut
|
||||
provides an abort error-handler for this use-cases-
|
||||
|
||||
@}
|
||||
\defgroup h5part_c_api H5Part
|
||||
@{
|
||||
\defgroup h5part_model Setting up the data model
|
||||
|
||||
The H5Part data model interface provides functions to set and
|
||||
inquire (per core) views on datasets.
|
||||
|
||||
\defgroup h5part_io Dataset interface
|
||||
|
||||
The dataset interface provides functions to read and write
|
||||
datasets. The following data types are supported:
|
||||
|
||||
- 64-bit floating point numbers (\c h5_float64_t)
|
||||
- 32-bit floating point numbers (\c h5_float32_t)
|
||||
- 64-bit integers (\c h5_int64_t)
|
||||
- 32-bit integers (\c h5_int32_t)
|
||||
|
||||
\note Before you can write or read a dataset, you have to
|
||||
define a "view" on the dataset for each core.
|
||||
|
||||
@}
|
||||
\defgroup h5block_c_api H5Block
|
||||
@{
|
||||
\defgroup h5block_model Setting up the data model
|
||||
|
||||
The H5Block data model interface provides functions to set and
|
||||
inquire (per core) views on fields.
|
||||
|
||||
\defgroup h5block_io Interface to block structured data
|
||||
|
||||
H5Block provides functions to store and retrieve
|
||||
|
||||
- 3-dimensional fields with scalar values
|
||||
- 3-dimensional fields with 3-dimensional vectors as values
|
||||
|
||||
The following datatypes are supported:
|
||||
|
||||
- 64-bit floating point numbers (\c h5_float64_t)
|
||||
- 32-bit floating point numbers (\c h5_float32_t)
|
||||
- 64-bit integers (\c h5_int64_t)
|
||||
- 32-bit integers (\c h5_int32_t)
|
||||
|
||||
\defgroup h5block_attrib Attaching attributes to field data
|
||||
|
||||
Field attributes are small datasets that can be used to
|
||||
describe specific properties of a field like origin, spacing
|
||||
or coordinates. The H5hut API provides functions to attach
|
||||
(write), read and inquire file attributes.
|
||||
|
||||
@}
|
||||
@}
|
||||
*/
|
||||
|
||||
/*!
|
||||
\defgroup f90_api Fortran90 API
|
||||
@{
|
||||
\defgroup h5_f90_api H5
|
||||
@{
|
||||
\defgroup h5_file_f file interface
|
||||
\defgroup h5_model_f setting up the data model
|
||||
\defgroup h5_file_attribs_f reading and writing file attributes
|
||||
\defgroup h5_step_attribs_f reading and writing step attributes
|
||||
\defgroup h5_log_f control verbosity level
|
||||
\defgroup h5_debug_f control debug output
|
||||
\defgroup h5_error_f error handling interface
|
||||
@}
|
||||
\defgroup h5part_f90_api H5Part
|
||||
@{
|
||||
\defgroup h5part_model_f setting up the data model
|
||||
\defgroup h5part_io_f reading and writing datasets
|
||||
@}
|
||||
\defgroup h5block_f90_api H5Block
|
||||
@{
|
||||
\defgroup h5block_model_f setting up the data model
|
||||
\defgroup h5block_io_f reading and writing datasets
|
||||
\defgroup h5block_attrib_f reading and writing attributes
|
||||
@}
|
||||
@}
|
||||
*/
|
||||
|
||||
Executable
+14
@@ -0,0 +1,14 @@
|
||||
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
|
||||
<html>
|
||||
<head>
|
||||
<title>Put your title here!!</title>
|
||||
<meta http-equiv="Content-Type" content="text/html; charset=us-ascii">
|
||||
<meta name="keywords" content="scientific visualization">
|
||||
<meta name="sitemap" content="put a brief descriptive phrase here that will show up in the site map:foo">
|
||||
|
||||
|
||||
<div id="maincenter">
|
||||
|
||||
Under construction, will be here soon.
|
||||
</div>
|
||||
|
||||
Executable
+15
@@ -0,0 +1,15 @@
|
||||
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
|
||||
<html>
|
||||
<head>
|
||||
<title>Put your title here!!</title>
|
||||
<meta http-equiv="Content-Type" content="text/html; charset=us-ascii">
|
||||
<meta name="keywords" content="scientific visualization">
|
||||
<meta name="sitemap" content="put a brief descriptive phrase here that will show up in the site map:foo">
|
||||
|
||||
|
||||
<div id="maincenter">
|
||||
|
||||
Under construction, will be here soon.
|
||||
|
||||
</div>
|
||||
|
||||
Executable
+15
@@ -0,0 +1,15 @@
|
||||
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
|
||||
<html>
|
||||
<head>
|
||||
<title>Put your title here!!</title>
|
||||
<meta http-equiv="Content-Type" content="text/html; charset=us-ascii">
|
||||
<meta name="keywords" content="scientific visualization">
|
||||
<meta name="sitemap" content="put a brief descriptive phrase here that will show up in the site map:foo">
|
||||
|
||||
|
||||
<div id="maincenter">
|
||||
|
||||
Under construction, will be here soon.
|
||||
|
||||
</div>
|
||||
|
||||
@@ -0,0 +1,99 @@
|
||||
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
|
||||
<html>
|
||||
<head>
|
||||
<title>Put your title here!!</title>
|
||||
<meta http-equiv="Content-Type" content="text/html; charset=us-ascii">
|
||||
<meta name="keywords" content="scientific visualization">
|
||||
<meta name="sitemap" content="put a brief descriptive phrase here that will show up in the site map:foo">
|
||||
|
||||
<!--#include virtual="/include/topIncludes.html"-->
|
||||
|
||||
<div id="maincenter">
|
||||
|
||||
|
||||
<head>
|
||||
<title>H5Part Utility Tools</title>
|
||||
</head>
|
||||
|
||||
<body bgcolor="#F0F0F0">
|
||||
<font face="arial,helvetica" size="+2" color="#555588"><h2>H5Part Utility Tools</h2></font>
|
||||
<UL>
|
||||
<LI><a href="h5pAttrib">h5pAttrib</a>
|
||||
<LI><a href="h5pToGNUplot">h5pToGNUplot</a>
|
||||
</UL>
|
||||
|
||||
<hr>
|
||||
|
||||
<a name="h5pAttrib">
|
||||
<h2>h5pAttrib</h2>
|
||||
</a>
|
||||
|
||||
<b>h5pAttrib</b> is an inspection tool that prints to stdout the number of timesteps in a file
|
||||
the file attributes, the step attributes, the dataset names and their values. It's simpler to use than h5dump.
|
||||
Usage options are given by typing:
|
||||
<br><br>
|
||||
<PRE>
|
||||
% ./h5pAttrib -h
|
||||
usage: h5pAttrib [OPTIONS] file
|
||||
|
||||
OPTIONS
|
||||
-h, --help Print help page
|
||||
-n, --nstep Print number of steps
|
||||
-A, --fileA Print file attributes
|
||||
-a, --stepA Print step attributes & values for time step n
|
||||
-d, --dataset Print data sets names & values for time step n
|
||||
-H, --header Print shorter version without the values
|
||||
</PRE>
|
||||
|
||||
<h3>Examples</h3>
|
||||
<OL>
|
||||
<LI>
|
||||
Show file attribute names & values of sample.h5part
|
||||
</LI>
|
||||
h5pAttrib -A sample.h5part
|
||||
<LI>
|
||||
Show step attribute names for time step 5 of sample.h5part
|
||||
</LI>
|
||||
h5pAttrib -a 5 -H sample.h5part
|
||||
</OL>
|
||||
|
||||
<a name="h5pToGNUplot">
|
||||
<h2>h5pToGNUplot</h2>
|
||||
</a>
|
||||
|
||||
<b>h5pToGNUplot</b> is a converter from H5Part to two column ASCII text format for loading into GNUplot. Usage options are given by typing:
|
||||
<br><br>
|
||||
<PRE>
|
||||
% ./h5pToGNUplot -h
|
||||
|
||||
usage: h5pToGNUplot -t TIMESTEP -1 VARIABLE#1 -2 VARIABLE#2 -i INPUTFILE [OPTIONAL_FLAGS]
|
||||
|
||||
FLAGS
|
||||
-h, --help Print help page
|
||||
-1, --1var (REQUIRED) Takes first variable parameter
|
||||
-2, --2var (REQUIRED) Takes second variable parameter
|
||||
-i, --input (REQUIRED) Takes input file name
|
||||
-t, --timestep (REQUIRED) Sets the timestep (Value -1 will result in dumping values of all timesteps.)
|
||||
-o, --output (OPTIONAL) Takes output file name (without this flag, the program will print to stdout)
|
||||
-n, --number (OPTIONAL) Sets number of output points
|
||||
-s, --start (OPTIONAL) Sets the starting particle index
|
||||
</PRE>
|
||||
|
||||
<h3>Examples</h3>
|
||||
<OL>
|
||||
<LI>
|
||||
Create a GNU plot file output.txt from sample.h5part by ploting x vs px for timestep 54
|
||||
</LI>
|
||||
h5pToGNUplot -t 54 -1 x -2 px -i sample.h5part -o output.txt
|
||||
<LI>
|
||||
Create a GNU plot file output.txt from sample.h5part by ploting x vs px for timestep 54
|
||||
using 1200 points from particle index 76
|
||||
</LI>
|
||||
h5pToGNUplot -t 54 -1 x -2 px -i sample.h5part -o output.txt -s 76 -n 1200
|
||||
</OL>
|
||||
|
||||
</div>
|
||||
|
||||
<!--#include virtual="/include/dateFooter.html"-->
|
||||
|
||||
|
||||
Executable
+75
@@ -0,0 +1,75 @@
|
||||
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
|
||||
<html>
|
||||
<head>
|
||||
<title>H5Part: VisIt Plugins</title>
|
||||
<meta http-equiv="Content-Type" content="text/html; charset=us-ascii">
|
||||
<meta name="keywords" content="scientific visualization">
|
||||
<meta name="sitemap" content="put a brief descriptive phrase here that will show up in the site map:foo">
|
||||
|
||||
|
||||
<div id="maincenter">
|
||||
<font face="arial,helvetica"><h1>H5Part: VisIt Plugins</h1></font>
|
||||
<font face="arial,helvetica" color="#555588"><h2>Introduction</h2></font>
|
||||
<P>
|
||||
<a href="http://www.llnl.gov/visit">VisIt</a> is an open source point-and-click 3D scientific visualization application that supports most of the common visualization techniques on structured and unstructured grids. One of its advantages is that it employs a distributed and parallel architecture in order to handle extremely large data sets interactively. VisIt's rendering and data processing capabilities are split into viewer and engine components that may be distributed across multiple machines. See this link for <a href="http://vis.lbl.gov/NERSC/Software/visit/">details</a> on how to run VisIt in NERSC.
|
||||
</P>
|
||||
<P>
|
||||
VisIt achieves extensibility through the use of dynamically loaded plugins. All of VisIt's plots, operators, and database readers are implemented as plugins and are loaded at run-time from the plugin directory. New plugins can be added simply by installing them in this directory. VisIt comes with a graphical plugin creation tool, which greatly simplifies the process of creating new plugins. The user describes the properties of the plugin and then the tool generates most of the code necessary to implement the plugin. For example, in the case of an operator, the plugin creation tool creates the code necessary for the graphical user interface attribute window; the C++, Python, and Java interfaces; and the code necessary to interface to VisIt. The only code you need to write is the C++ code that actually performs the operation.
|
||||
</P>
|
||||
<font face="arial,helvetica" color="#555588"><h2>H5Part in VisIt</h2></font>
|
||||
<font face="arial,helvetica" color="#555588"><h3>Database Reader Plugin</h3></font>
|
||||
<P>
|
||||
We wrote a Multiple Time Step Multiple Domain database reader to read H5Part data into VisIt. H5Part datasets should be named with the extension <font color=red>".h5part"</font> to be recognized by the reader since VisIt does not have a format selection mechanism at the time of reading. Figure 1 shows a Pseudocolor plot of a data set and Figure 2 shows a Scatter plot x-y (any combination of x, px, y, py, z, pz, id are possible).
|
||||
</P>
|
||||
<P>
|
||||
<TABLE>
|
||||
<TR>
|
||||
<TD>
|
||||
<a href="H5PartVisIt/cloud_visit.png"><img src="H5PartVisIt/cloud_visit.s.png" width=400 height=300></a>
|
||||
</TD
|
||||
></TR>
|
||||
<TR>
|
||||
<TD width=300>
|
||||
Figure 1. VisIt User interface showing an H5Part particle file rendered as spheres using the Pseudocolor plot.
|
||||
</TD>
|
||||
</TR>
|
||||
<TR>
|
||||
<TD>
|
||||
<a href="H5PartVisIt/cloud_visit_2D.png"><img src="H5PartVisIt/cloud_visit_2D.s.png" width=300 height=300></a>
|
||||
</TD>
|
||||
</TR>
|
||||
<TR>
|
||||
<TD>
|
||||
Figure 2. A Scatter plot of the x-y projection of the particles.
|
||||
</TD>
|
||||
</TR>
|
||||
</TABLE>
|
||||
</P>
|
||||
|
||||
<P>
|
||||
VisIt provides a Query interface, for single time steps and for time series. Figure 3 shows the query interace over time for the sum of the x position and the z position of the particoes.
|
||||
</P>
|
||||
<P>
|
||||
<TABLE>
|
||||
<TR>
|
||||
<TD>
|
||||
<a href="H5PartVisIt/visit_query1.png"><img src="H5PartVisIt/visit_query1.s.png" width=400 height=300></a>
|
||||
</TD
|
||||
></TR>
|
||||
<TR>
|
||||
<TD width=300>
|
||||
Figure 3. VisIt's Time Query Output.
|
||||
</TD>
|
||||
</TR>
|
||||
</TABLE>
|
||||
</p>
|
||||
<font face="arial,helvetica" color="#555588"><h2>Operator Plugins</h2></font>
|
||||
<P>
|
||||
<font face="arial,helvetica" color="#555588"><h3>Particle Random Sampler</h3></font>
|
||||
|
||||
|
||||
</P>
|
||||
<P>
|
||||
<font face="arial,helvetica" color="#555588"><h3>Particle Binner</h3></font>
|
||||
</P>
|
||||
</div>
|
||||
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|
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|
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|
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|
After Width: | Height: | Size: 79 KiB |
@@ -1,170 +0,0 @@
|
||||
Proposal for a more general file format used by H5Part/H5Block
|
||||
|
||||
Authors: Achim Gsell
|
||||
Status: Draft
|
||||
|
||||
1. Introduction
|
||||
|
||||
H5X is the file format used by H5Part and H5Block. H5X is designed on
|
||||
top of HDF5: A H5X file is a very special HDF5 file.
|
||||
|
||||
+--------------------+
|
||||
| Application |
|
||||
+--------------------+
|
||||
| H5Part/H5Block API |
|
||||
+--------------------+
|
||||
| H5X API |
|
||||
+--------------------+
|
||||
| HDF5 API |
|
||||
+--------------------+
|
||||
| Filesystem of OS |
|
||||
+--------------------+
|
||||
|
||||
|
||||
2. H5X file format specification
|
||||
|
||||
2.1 The root group
|
||||
|
||||
2.1.1 File attributes
|
||||
|
||||
Attributes of the HDF5 root group are called "file attributes". There
|
||||
are no restrictions on file attribute names. Names with "__" as prefix and
|
||||
postfix are intended for internal use. Supported values for file attributes
|
||||
are scalars and arrays of 64bit integer and 64bit floating point number as
|
||||
well as string values. Arrays of strings are not supported.
|
||||
|
||||
2.1.1.1 Predefined file attributes
|
||||
|
||||
__stepname__ (optional)
|
||||
See below.
|
||||
|
||||
__stepnumwidth__ (optional)
|
||||
See below.
|
||||
|
||||
2.1.2 Members of the root group
|
||||
|
||||
Members of the root group are special formated HDF5 groups called
|
||||
"step groups". The name of a step group is "<name>#<number>".
|
||||
Whereby <name> is either defined by the optional file attribute
|
||||
__stepname__ or set to "Step" by default. <number> is an
|
||||
unsigned integer less than 2^63.
|
||||
|
||||
/
|
||||
+- Step#0
|
||||
+- Step#1
|
||||
...
|
||||
+- Step#n
|
||||
+- StepProperties [NEW]
|
||||
+- Mesh [NEW]
|
||||
|
||||
The optional file attribute __stepnumwidth__ defines the minimum width
|
||||
of <number> in the name of the step group. The number is padded with
|
||||
'0'. The minimum width defaults to zero, so that no paddings occurs.
|
||||
Example: With __stepnumwidth__ := 5 the name of the step group with
|
||||
number 42 is "Step#00042", with __stepnumwidth__ := 0 the name is
|
||||
"Step#42".
|
||||
|
||||
Step groups may be unsorted in the HDF5 file und needn't be number
|
||||
consecutively.
|
||||
|
||||
2.1.3 Other members of the root group
|
||||
|
||||
Other sub-groups of the root group are allowed, but the group names are restricted
|
||||
to names not matching "Step#.*".
|
||||
|
||||
2.2 Format of a step group
|
||||
|
||||
2.2.1 Step attributes
|
||||
|
||||
Step attributes are HDF5 attributes asigned to a step group. There
|
||||
are no restrictions on step attribute names. As with file attributes names
|
||||
enclosed in "__" are intended for internal use. Supported values are the same
|
||||
as for file attributes:
|
||||
* 64bit integer value
|
||||
* arrays of 64bit integer values
|
||||
* 64bit floating point number
|
||||
* array of 64bit floating point number
|
||||
* strings
|
||||
Note that array of strings are not supported!
|
||||
|
||||
2.2.2 Predefined step attributes
|
||||
|
||||
No predefined step attributes exists.
|
||||
|
||||
|
||||
2.2.3 Members of a step group
|
||||
|
||||
Members of a step group are HDF5 datasets and optional one HDF5 group
|
||||
with the name "Block". HDF5 datasets in a step group are called "step
|
||||
datasets". The optional block group is called "block data".
|
||||
|
||||
Mesh?!
|
||||
|
||||
2.2.4 Step datasets
|
||||
|
||||
Step datasets are arrays of rank 1. The dataset size must be the same
|
||||
for all datasets inside a step. The size of the dataset may vary
|
||||
from step to step. Array values are 64bit integer or 64bit floating
|
||||
point numbers. No limitations (other than given by HDF5) are given on
|
||||
step dataset names.
|
||||
|
||||
|
||||
2.2.5 Block Data
|
||||
|
||||
The block data group is a container for an arbitrary number of field
|
||||
data. A field is a data structure to store arrays of rank m with
|
||||
n-dimensional vector values. Fields are represented within HDF5
|
||||
groups. The HDF5 group name is the unique identifier for a field in
|
||||
the current step.
|
||||
|
||||
2.2.5.1 m-rank fields with n-dimensional-vector values
|
||||
|
||||
Values are stored per dimension in separate datasets. Thus we have n
|
||||
datasets for a field with n-dimensional vector values. Each dataset
|
||||
corresponse to one dimension. The datasets are numbered from '0' to
|
||||
'n-1'. Arrays are stored in column major order (Fortran indexing
|
||||
scheme).
|
||||
|
||||
/ # HDF5 root group
|
||||
...
|
||||
+- Step#<i> # HDF5 group
|
||||
|
|
||||
+- Block # HDF5 group
|
||||
|
|
||||
+- <field name> # HDF5 group
|
||||
|
|
||||
+- 0 # HDF5 dataset, first dim of vector
|
||||
+- 1 # HDF5 dataset, second dim of vector
|
||||
...
|
||||
+- n-1 # HDF5 dataset, last dim of vector
|
||||
...
|
||||
|
||||
2.2.5.2 m-rank fields with scalar values
|
||||
|
||||
Fields with scalar values are stored as special case of fields with
|
||||
n-dimensional vector values with n := 1.
|
||||
|
||||
/ # HDF5 root group
|
||||
...
|
||||
+- Step#<i> # HDF5 group
|
||||
|
|
||||
+- Block # HDF5 group
|
||||
|
|
||||
+- <field name> # HDF5 group
|
||||
|
|
||||
+- 0 # HDF5 dataset, scalar value
|
||||
...
|
||||
|
||||
|
||||
2.3 Step properties [NEW]
|
||||
|
||||
Why? Much faster than step attributes if you need to access consecutive values
|
||||
|
||||
Group of root group with name "StepProperties"
|
||||
|
||||
Members are datasets
|
||||
|
||||
Supported values are the same as for step attributes
|
||||
|
||||
Mapping of value to step via object index of step group
|
||||
|
||||
@@ -0,0 +1,417 @@
|
||||
<html><head><title>H5Part Tools How-to</title>
|
||||
|
||||
<meta http-equiv="Content-Type" content="text/html; charset=euc-kr"></head>
|
||||
<body bgcolor="#ffffff" text="#000000">
|
||||
|
||||
<table border="0" cellpadding="0" cellspacing="0" width="987">
|
||||
<tbody><tr>
|
||||
<td height="6050" width="27"></td>
|
||||
<td colspan="3" valign="top">
|
||||
<div id="body">
|
||||
<div id="mainleft"><font face="Arial, Helvetica, sans-serif"><a name="TOP"></a>
|
||||
</font></div>
|
||||
<div id="maincenter"> <font face="arial,helvetica">
|
||||
<h1 align="center"><font face="Arial, Helvetica, sans-serif"><b><font color="#666699">H5Part
|
||||
Tools How-to</font></b></font></h1>
|
||||
</font><font color="#555588" face="arial,helvetica">
|
||||
<h2><font color="#666699" face="Arial, Helvetica, sans-serif">Table
|
||||
of Contents</font></h2>
|
||||
</font>
|
||||
<p><font face="Arial, Helvetica, sans-serif"><b><a href="#Quick%20Guide">
|
||||
[1] Quick Guide</a></b> </font></p>
|
||||
<p><font face="Arial, Helvetica, sans-serif" size="+1"><b><font color="#999999">---
|
||||
For h5pAttrib</font></b></font><font face="Arial, Helvetica, sans-serif"><br>
|
||||
<b><br>
|
||||
<a href="#timesteps">[2] To see number of timesteps in a h5part file</a><br>
|
||||
<br>
|
||||
<a href="#file%20attributes">[3] To see file attributes in a h5part
|
||||
file</a><br>
|
||||
<br>
|
||||
<a href="#step%20attributes"> [4] To see step attributes in a h5part
|
||||
file</a><br>
|
||||
<br>
|
||||
<a href="#dataset">[5] To see dataset in a h5part file</a><br>
|
||||
<br>
|
||||
<a href="#flags">[6] Providing more than one flag at once for h5pAttrib</a></b></font></p>
|
||||
<p><font face="Arial, Helvetica, sans-serif" size="+1"><b><font color="#999999">---
|
||||
For h5pToGNUplot</font></b></font><font face="Arial, Helvetica, sans-serif"><br>
|
||||
<br>
|
||||
<b><a href="#parameters">[7] What parameters to provide</a><br>
|
||||
<br>
|
||||
<a href="#input%20file">[8] How to create an input file to GNUplot</a></b></font></p>
|
||||
<p> </p>
|
||||
<p align="center"><font face="Arial, Helvetica, sans-serif"><a href="#TOP"><back
|
||||
to top></a></font></p>
|
||||
<p> </p>
|
||||
<h2><font color="#555588" face="Arial, Helvetica, sans-serif"><a name="Quick Guide">[1]
|
||||
Quick Guide</a></font></h2>
|
||||
<p><font face="Arial, Helvetica, sans-serif">Executing the program with
|
||||
-h option will display a concise help page.</font></p>
|
||||
<p><font face="Arial, Helvetica, sans-serif"><b><font face="Courier New, Courier, mono" size="+1">$></font></b><font face="Courier New, Courier, mono">./h5pAttrib
|
||||
-h</font></font></p>
|
||||
<p><font face="Courier New, Courier, mono">usage: h5pAttrib [OPTIONS]
|
||||
file</font></p>
|
||||
<p><font face="Courier New, Courier, mono"> OPTIONS<br>
|
||||
-h, --help Print help page<br>
|
||||
-n, --nstep Print number of steps<br>
|
||||
-A, --fileA Print file attributes<br>
|
||||
-a n, --stepA n Print step attributes & values for time step n<br>
|
||||
-d n, --dataset n Print data sets names & values for time step
|
||||
n<br>
|
||||
-H, --header Print shorter version without the values</font></p>
|
||||
<p><font face="Courier New, Courier, mono"> Examples:</font></p>
|
||||
<p><font face="Courier New, Courier, mono"> 1) Show file attribute names
|
||||
& values of sample.h5part</font></p>
|
||||
<p><font face="Courier New, Courier, mono"> h5pAttrib -A sample.h5part<br>
|
||||
OR<br>
|
||||
h5pAttrib --fileA sample.h5part</font></p>
|
||||
<p><font face="Courier New, Courier, mono"> 2) Show step attribute names
|
||||
for time step 5 of sample.h5part</font></p>
|
||||
<p><font face="Courier New, Courier, mono"> h5pAttrib -a 5 -H sample.h5part<br>
|
||||
OR<br>
|
||||
h5pAttrib --stepA 5 -H sample.h5part</font></p>
|
||||
<p><font face="Courier New, Courier, mono"><br>
|
||||
<b><font size="+1">$></font></b> ./h5pToGNUplot -h</font></p>
|
||||
<p><font face="Courier New, Courier, mono">usage: h5pToGNUplot -t TIMESTEP
|
||||
-1 VARIABLE#1 -2 VARIABLE#2 -i INPUTFILE [OPTIONAL_FLAGS]</font></p>
|
||||
<p><font face="Courier New, Courier, mono"> FLAGS<br>
|
||||
-h, --help Print help page</font><br>
|
||||
<font face="Courier New, Courier, mono">-1 par, --1var par (REQUIRED)
|
||||
Takes first variable parameter to "par"<br>
|
||||
-2 par, --2var par (REQUIRED) Takes second variable parameter to "par"<br>
|
||||
-i file, --input file (REQUIRED) Takes input file name to "file"<br>
|
||||
</font><font face="Courier New, Courier, mono">-t step, --timestep
|
||||
step (REQUIRED) Sets the timestep to "step" (Value -1 will
|
||||
result in dumping values of all timesteps.)<br>
|
||||
-o file, --output file (OPTIONAL) Takes output file name to "file"
|
||||
(without this flag, the program will print to stdout)<br>
|
||||
-n num, --number num (OPTIONAL) Sets number of output points to "num"<br>
|
||||
-s idx, --start idx (OPTIONAL) Sets the starting particle index to
|
||||
"idx"</font></p>
|
||||
<p><font face="Courier New, Courier, mono"><br>
|
||||
Examples:</font></p>
|
||||
<p><font face="Courier New, Courier, mono"> 1) Create GNU plot file
|
||||
output.txt from sample.h5part by ploting x vs px for timestep 54</font></p>
|
||||
<p><font face="Courier New, Courier, mono"> h5pToGNUplot -t 54 -1 x
|
||||
-2 px -i sample.h5part -o output.txt</font></p>
|
||||
<p><font face="Courier New, Courier, mono"> 2) Create GNU plot file
|
||||
output.txt from sample.h5part by ploting x vs px for timestep 54<br>
|
||||
using 1200 points from particle index 76</font></p>
|
||||
<p><font face="Courier New, Courier, mono"> h5pToGNUplot -t 54 -1 x
|
||||
-2 px -i sample.h5part -o output.txt -s 76 -n 1200</font></p>
|
||||
<p> </p>
|
||||
<p align="center"><font face="Arial, Helvetica, sans-serif"><a href="#TOP"><back
|
||||
to top></a></font></p>
|
||||
<p> </p>
|
||||
<p><font face="Arial, Helvetica, sans-serif" size="+1"><b><font color="#999999">---
|
||||
For h5pAttrib</font></b></font></p>
|
||||
<p> </p>
|
||||
<h2><font color="#555588" face="Arial, Helvetica, sans-serif"><a name="timesteps">[2]
|
||||
To see number of timesteps in a h5part file</a></font></h2>
|
||||
<p>Executing the program h5pAttrib with -n flag will display the number
|
||||
of timesteps in the file.</p>
|
||||
<p><font face="Arial, Helvetica, sans-serif"><b>EXAMPLE>></b></font></p>
|
||||
<p><font face="Arial, Helvetica, sans-serif" size="+1"><b><font face="Courier New, Courier, mono">$></font></b></font><font face="Courier New, Courier, mono">
|
||||
./h5pAttrib -n sample.h5part</font></p>
|
||||
<p><font face="Courier New, Courier, mono">++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++</font></p>
|
||||
<p><font face="Courier New, Courier, mono">Printing number of timesteps
|
||||
for: sample.h5part ...</font></p>
|
||||
<p><font face="Courier New, Courier, mono">There are total 252 number
|
||||
of timesteps.<br>
|
||||
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++</font></p>
|
||||
<p><font face="Courier New, Courier, mono">done</font><font face="Arial, Helvetica, sans-serif"><br>
|
||||
</font></p>
|
||||
<p> </p>
|
||||
<p align="center"><font face="Arial, Helvetica, sans-serif"><a href="#TOP"><back
|
||||
to top></a></font></p>
|
||||
<h2><font color="#666699" face="Arial, Helvetica, sans-serif"><br>
|
||||
<font color="#555588"><a name="file attributes">[3] To see file attributes
|
||||
in a h5part file</a></font></font></h2>
|
||||
<p>File attribute contains information about the file. (file description
|
||||
etc...) Executing the program h5pAttrib with -A flag will display
|
||||
the file attributes in the file.</p>
|
||||
<p><font face="Arial, Helvetica, sans-serif"><b>EXAMPLE>></b></font></p>
|
||||
<p><font face="Arial, Helvetica, sans-serif" size="+1"><b><font face="Courier New, Courier, mono">$></font></b></font><font face="Courier New, Courier, mono">
|
||||
./h5pAttrib -A sample.h5part</font></p>
|
||||
<p><font face="Courier New, Courier, mono">++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++</font></p>
|
||||
<p><font face="Courier New, Courier, mono">Printing file attributes
|
||||
for: sample.h5part ...</font></p>
|
||||
<p><font face="Courier New, Courier, mono">The number of file attributes
|
||||
for file sample.h5part is 0 ...<br>
|
||||
There are no file attributes.<br>
|
||||
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++</font></p>
|
||||
<p><font face="Courier New, Courier, mono">done</font></p>
|
||||
<p><font face="Arial, Helvetica, sans-serif"><br>
|
||||
<i>NOTE: -H option will omit the list of values of file attributes.</i></font></p>
|
||||
<p> </p>
|
||||
<p align="center"><font face="Arial, Helvetica, sans-serif"><a href="#TOP"><back
|
||||
to top></a></font></p>
|
||||
<p align="center"> </p>
|
||||
<h2><font color="#555588" face="Arial, Helvetica, sans-serif"><a name="step attributes">[4]
|
||||
To see step attributes in a h5part file</a></font></h2>
|
||||
<p>Step attribute contains information that belongs to a specific step.
|
||||
(step name, timestep number, etc...) Executing the program h5pAttrib
|
||||
with -a flag will display the step attributes in the file.<br>
|
||||
Note that the timestep index should follow -a flag.</p>
|
||||
<p><font face="Arial, Helvetica, sans-serif"><b>EXAMPLE>></b></font></p>
|
||||
<p><font face="Arial, Helvetica, sans-serif"><b><font face="Courier New, Courier, mono" size="+1">$></font></b><font face="Courier New, Courier, mono">
|
||||
./h5pAttrib -a 2 sample.h5part</font></font></p>
|
||||
<p><font face="Courier New, Courier, mono">++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++</font></p>
|
||||
<p><font face="Courier New, Courier, mono">Printing step attributes
|
||||
for: sample.h5part ...</font></p>
|
||||
<p><font face="Courier New, Courier, mono">The number of step attributes
|
||||
for timestep #2 is 10 ...</font></p>
|
||||
<p><font face="Courier New, Courier, mono">Attribute #0 = Step<br>
|
||||
There are 1 elements in the attribute<br>
|
||||
Attribute Type is H5T_NATIVE_INT64<br>
|
||||
Printing 1 element value(s):<br>
|
||||
COUNT[0]: 2</font></p>
|
||||
<p><font face="Courier New, Courier, mono">Attribute #1 = Spos<br>
|
||||
There are 1 elements in the attribute<br>
|
||||
Attribute Type is H5T_NATIVE_DOUBLE<br>
|
||||
Printing 1 element value(s):<br>
|
||||
COUNT[0]: 0.143580</font></p>
|
||||
<p><font face="Courier New, Courier, mono">Attribute #2 = structLen<br>
|
||||
There are 1 elements in the attribute<br>
|
||||
Attribute Type is H5T_NATIVE_DOUBLE<br>
|
||||
Printing 1 element value(s):<br>
|
||||
COUNT[0]: 2.393000</font></p>
|
||||
<p><font face="Courier New, Courier, mono">.<br>
|
||||
.<br>
|
||||
.</font></p>
|
||||
<p><font face="Courier New, Courier, mono"><br>
|
||||
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++</font></p>
|
||||
<p><font face="Courier New, Courier, mono">done</font></p>
|
||||
<p><font face="Arial, Helvetica, sans-serif"><br>
|
||||
<i>NOTE: -H option will omit the list of values of step attributes.</i></font></p>
|
||||
<p> </p>
|
||||
<p align="center"><font face="Arial, Helvetica, sans-serif"><a href="#TOP"><back
|
||||
to top></a></font></p>
|
||||
<h2><font color="#555588" face="Arial, Helvetica, sans-serif"><br>
|
||||
<a name="dataset">[5] To see dataset in a h5part file</a></font></h2>
|
||||
<p>Executing the program h5pAttrib with -d flag will display the datasets
|
||||
information in the file. (dataset name, type, number of elements,
|
||||
etc...) Executing the program h5pAttrib with -d flag will display
|
||||
the datasets information in the file.<br>
|
||||
Note that the timestep index should follow -d flag.</p>
|
||||
<p><font face="Arial, Helvetica, sans-serif"><b>EXAMPLE>></b></font></p>
|
||||
<p><font face="Arial, Helvetica, sans-serif" size="+1"><b><font face="Courier New, Courier, mono">$></font></b></font><font face="Courier New, Courier, mono">
|
||||
./h5pAttrib -d 2 -H sample.h5part</font></p>
|
||||
<p><font face="Courier New, Courier, mono">++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++</font></p>
|
||||
<p><font face="Courier New, Courier, mono">Printing names of datasets
|
||||
for: sample.h5part ...</font></p>
|
||||
<p><font face="Courier New, Courier, mono">The number of datasets for
|
||||
timestep #2 is 7 ...</font></p>
|
||||
<p><font face="Courier New, Courier, mono">Dataset Name #0 = id<br>
|
||||
Dataset Type is H5T_NATIVE_INT64<br>
|
||||
Number of elements: 67587</font></p>
|
||||
<p><font face="Courier New, Courier, mono">Dataset Name #1 = px<br>
|
||||
Dataset Type is H5T_NATIVE_DOUBLE<br>
|
||||
Number of elements: 67587</font></p>
|
||||
<p><font face="Courier New, Courier, mono">Dataset Name #2 = py<br>
|
||||
Dataset Type is H5T_NATIVE_DOUBLE<br>
|
||||
Number of elements: 67587</font></p>
|
||||
<p><font face="Courier New, Courier, mono">Dataset Name #3 = pz<br>
|
||||
Dataset Type is H5T_NATIVE_DOUBLE<br>
|
||||
Number of elements: 67587</font></p>
|
||||
<p><font face="Courier New, Courier, mono">Dataset Name #4 = x<br>
|
||||
Dataset Type is H5T_NATIVE_DOUBLE<br>
|
||||
Number of elements: 67587</font></p>
|
||||
<p><font face="Courier New, Courier, mono">Dataset Name #5 = y<br>
|
||||
Dataset Type is H5T_NATIVE_DOUBLE<br>
|
||||
Number of elements: 67587</font></p>
|
||||
<p><font face="Courier New, Courier, mono">Dataset Name #6 = z<br>
|
||||
Dataset Type is H5T_NATIVE_DOUBLE<br>
|
||||
Number of elements: 67587</font></p>
|
||||
<p><font face="Courier New, Courier, mono">++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++</font></p>
|
||||
<p><font face="Courier New, Courier, mono">done</font></p>
|
||||
<p><font face="Arial, Helvetica, sans-serif"><br>
|
||||
<i>NOTE: -H option will omit the list of values of datasets.</i></font></p>
|
||||
<p> </p>
|
||||
<p align="center"><font face="Arial, Helvetica, sans-serif"><a href="#TOP"><back
|
||||
to top></a></font></p>
|
||||
<p> </p>
|
||||
<h2><font color="#555588" face="Arial, Helvetica, sans-serif"><a name="flags">[6]
|
||||
Providing more than one flag at once</a></font></h2>
|
||||
<p><font face="Arial, Helvetica, sans-serif">When more than one flags
|
||||
are provided, one result after another will be displayed.</font></p>
|
||||
<p><font face="Arial, Helvetica, sans-serif"><b>EXAMPLE>></b></font></p>
|
||||
<p><font face="Arial, Helvetica, sans-serif" size="+1"><b><font face="Courier New, Courier, mono">$></font></b></font><font face="Courier New, Courier, mono">
|
||||
./h5pAttrib -H -a 1 -d 1 sample.h5part</font></p>
|
||||
<p><font face="Courier New, Courier, mono">++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++</font></p>
|
||||
<p><font face="Courier New, Courier, mono">Printing step attributes
|
||||
for: sample.h5part ...</font></p>
|
||||
<p><font face="Courier New, Courier, mono">The number of step attributes
|
||||
for timestep #1 is 10 ...</font></p>
|
||||
<p><font face="Courier New, Courier, mono">Attribute #0 = Step<br>
|
||||
Attribute #1 = Spos<br>
|
||||
Attribute #2 = structLen<br>
|
||||
Attribute #3 = org<br>
|
||||
Attribute #4 = maxX<br>
|
||||
Attribute #5 = minX<br>
|
||||
Attribute #6 = maxP<br>
|
||||
Attribute #7 = minP<br>
|
||||
Attribute #8 = centroid<br>
|
||||
Attribute #9 = nloc<br>
|
||||
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++</font></p>
|
||||
<p><font face="Courier New, Courier, mono"><br>
|
||||
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++</font></p>
|
||||
<p><font face="Courier New, Courier, mono">Printing names of datasets
|
||||
for: sample.h5part ...</font></p>
|
||||
<p><font face="Courier New, Courier, mono">The number of datasets for
|
||||
timestep #1 is 7 ...</font></p>
|
||||
<p><font face="Courier New, Courier, mono">Dataset Name #0 = id<br>
|
||||
Dataset Type is H5T_NATIVE_INT64<br>
|
||||
Number of elements: 60214</font></p>
|
||||
<p><font face="Courier New, Courier, mono">Dataset Name #1 = px<br>
|
||||
Dataset Type is H5T_NATIVE_DOUBLE<br>
|
||||
Number of elements: 60214</font></p>
|
||||
<p><font face="Courier New, Courier, mono">Dataset Name #2 = py<br>
|
||||
Dataset Type is H5T_NATIVE_DOUBLE<br>
|
||||
Number of elements: 60214</font></p>
|
||||
<p><font face="Courier New, Courier, mono">Dataset Name #3 = pz<br>
|
||||
Dataset Type is H5T_NATIVE_DOUBLE<br>
|
||||
Number of elements: 60214</font></p>
|
||||
<p><font face="Courier New, Courier, mono">Dataset Name #4 = x<br>
|
||||
Dataset Type is H5T_NATIVE_DOUBLE<br>
|
||||
Number of elements: 60214</font></p>
|
||||
<p><font face="Courier New, Courier, mono">Dataset Name #5 = y<br>
|
||||
Dataset Type is H5T_NATIVE_DOUBLE<br>
|
||||
Number of elements: 60214</font></p>
|
||||
<p><font face="Courier New, Courier, mono">Dataset Name #6 = z<br>
|
||||
Dataset Type is H5T_NATIVE_DOUBLE<br>
|
||||
Number of elements: 60214</font></p>
|
||||
<p><font face="Courier New, Courier, mono">++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++</font></p>
|
||||
<p><font face="Courier New, Courier, mono">done</font></p>
|
||||
<p> </p>
|
||||
<div align="center"><font face="Arial, Helvetica, sans-serif"><a href="#TOP"><back
|
||||
to top></a></font></div>
|
||||
</div>
|
||||
</div>
|
||||
</td>
|
||||
</tr>
|
||||
<tr>
|
||||
<td height="80"></td>
|
||||
<td colspan="3" valign="top">
|
||||
<h2><font face="Arial, Helvetica, sans-serif" size="+1"><b><font color="#999999">---
|
||||
For h5pToGNUplot</font></b></font></h2>
|
||||
<h2><font color="#555588" face="Arial, Helvetica, sans-serif"><a name="parameters">[7]
|
||||
What parameters to provide</a></font></h2>
|
||||
<p><font face="Arial, Helvetica, sans-serif">When you execute the program
|
||||
with -h option, it displays what flags are necessary and what flags are
|
||||
optional.</font></p>
|
||||
</td>
|
||||
</tr>
|
||||
<tr>
|
||||
<td height="200"></td>
|
||||
<td valign="top" width="137">
|
||||
<p align="left"><b><font face="Arial, Helvetica, sans-serif">Short Version</font></b></p>
|
||||
<p><font face="Arial, Helvetica, sans-serif">-h<br>
|
||||
-1<br>
|
||||
-2<br>
|
||||
-i<br>
|
||||
-t<br>
|
||||
-o<br>
|
||||
-n<br>
|
||||
-s </font></p>
|
||||
</td>
|
||||
<td valign="top" width="144">
|
||||
<p align="left"><b><font face="Arial, Helvetica, sans-serif">Long Version</font></b></p>
|
||||
<p><font face="Arial, Helvetica, sans-serif">--help<br>
|
||||
--1var<br>
|
||||
--2var<br>
|
||||
--input<br>
|
||||
--timestep<br>
|
||||
--output<br>
|
||||
--number<br>
|
||||
--start </font></p>
|
||||
</td>
|
||||
<td valign="top" width="679">
|
||||
<p align="left"><b><font face="Arial, Helvetica, sans-serif">Meanings</font></b></p>
|
||||
<p><font face="Arial, Helvetica, sans-serif">Print help page<br>
|
||||
(REQUIRED) Takes first variable parameter<br>
|
||||
(REQUIRED) Takes second variable parameter<br>
|
||||
(REQUIRED) Takes input file name<br>
|
||||
(REQUIRED) Sets the timestep (Value -1 will result in dumping values of
|
||||
all timesteps.)<br>
|
||||
(OPTIONAL) Takes output file name (without this flag, the program will
|
||||
print to stdout)<br>
|
||||
(OPTIONAL) Sets number of output points<br>
|
||||
(OPTIONAL) Sets the starting particle index</font> </p>
|
||||
</td>
|
||||
</tr>
|
||||
<tr>
|
||||
<td height="1786"></td>
|
||||
<td colspan="3" valign="top">
|
||||
<p> </p>
|
||||
<p align="center"><font face="Arial, Helvetica, sans-serif"><a href="#TOP"><back
|
||||
to top></a></font></p>
|
||||
<h2><font color="#555588" face="Arial, Helvetica, sans-serif"><br>
|
||||
<a name="input file">[8] How to create an input file to GNUplot</a></font></h2>
|
||||
<p><font face="Arial, Helvetica, sans-serif"><b>EXAMPLE>></b><br>
|
||||
<i>Create input file to GNUplot that plots x vs. y.</i></font></p>
|
||||
<p><font face="Arial, Helvetica, sans-serif"><b><font face="Courier New, Courier, mono" size="+1">$></font></b><font face="Courier New, Courier, mono">
|
||||
./h5pToGNUplot -1 x -2 y -t 1 -i sample.h5part -o output.txt<br>
|
||||
<b><font size="+1">$></font></b> cat output.txt<br>
|
||||
-0.390779 -0.254793<br>
|
||||
-0.396527 -0.252781<br>
|
||||
-0.375362 -0.285137<br>
|
||||
-0.396527 -0.252781<br>
|
||||
-0.379917 -0.283147<br>
|
||||
-0.390779 -0.254793<br>
|
||||
-0.387536 -0.287346<br>
|
||||
-0.371787 -0.319797<br>
|
||||
-0.379917 -0.283147<br>
|
||||
-0.378967 -0.326058<br>
|
||||
-0.378976 -0.326078<br>
|
||||
-0.387536 -0.287346<br>
|
||||
-0.378957 -0.326069<br>
|
||||
-0.379917 -0.283147<br>
|
||||
-0.388762 -0.265390<br>
|
||||
-0.371787 -0.319797<br>
|
||||
-0.390779 -0.254793<br>
|
||||
-0.376825 -0.266804<br>
|
||||
-0.379917 -0.283147<br>
|
||||
-0.375362 -0.285137<br>
|
||||
...</font></font></p>
|
||||
<p><font face="Courier New, Courier, mono"><i>Then run GNUplot...</i></font></p>
|
||||
<p><font face="Courier New, Courier, mono"><b><font size="+1">$></font></b>
|
||||
gnuplot</font></p>
|
||||
<p><font face="Courier New, Courier, mono"> G N U P L O T<br>
|
||||
Version 4.0 patchlevel 0<br>
|
||||
last modified Thu Apr 15 14:44:22 CEST 2004<br>
|
||||
System: Linux 2.6.11.4-21.11-smp</font></p>
|
||||
<p><font face="Courier New, Courier, mono"> Copyright (C) 1986 - 1993, 1998,
|
||||
2004<br>
|
||||
Thomas Williams, Colin Kelley and many others</font></p>
|
||||
<p><font face="Courier New, Courier, mono"> This is gnuplot version 4.0.
|
||||
Please refer to the documentation<br>
|
||||
for command syntax changes. The old syntax will be accepted<br>
|
||||
throughout the 4.0 series, but all save files use the new syntax.</font></p>
|
||||
<p><font face="Courier New, Courier, mono"> Type `help` to access the on-line
|
||||
reference manual.<br>
|
||||
The gnuplot FAQ is available from<br>
|
||||
http://www.gnuplot.info/faq/</font></p>
|
||||
<p><font face="Courier New, Courier, mono"> Send comments and requests for
|
||||
help to<br>
|
||||
<gnuplot-info@lists.sourceforge.net><br>
|
||||
Send bugs, suggestions and mods to<br>
|
||||
<gnuplot-bugs@lists.sourceforge.net></font></p>
|
||||
<p><font face="Courier New, Courier, mono"><br>
|
||||
Terminal type set to 'x11'<br>
|
||||
<font size="+1"><b>gnuplot></b></font> plot "output.txt"</font></p>
|
||||
<p><font face="Arial, Helvetica, sans-serif"><i>This will open a GNUplot
|
||||
window that plots output.txt.</i></font></p>
|
||||
<p align="center"><img src="H5tools_files/snapshot1.jpg" height="541" width="672"><br>
|
||||
<font face="Arial, Helvetica, sans-serif"><Sample screen shot of GNUplot
|
||||
with input datafile generated by h5pToGNUplot></font></p>
|
||||
</td>
|
||||
</tr>
|
||||
<tr>
|
||||
<td height="44"></td>
|
||||
<td></td>
|
||||
<td></td>
|
||||
<td></td>
|
||||
</tr>
|
||||
</tbody></table>
|
||||
</body></html>
|
||||
Binary file not shown.
|
After Width: | Height: | Size: 239 KiB |
Executable
+345
@@ -0,0 +1,345 @@
|
||||
\documentclass[acus]{JAC2003}
|
||||
|
||||
%%
|
||||
%% Use \documentclass[boxit]{JAC2003}
|
||||
%% to draw a frame with the correct margins on the output.
|
||||
%%
|
||||
%% Use \documentclass[acus]{JAC2003}
|
||||
%% for US letter paper layout
|
||||
%%
|
||||
|
||||
\usepackage{graphicx}
|
||||
|
||||
%%
|
||||
%% VARIABLE HEIGHT FOR THE TITLE BOX (default 35mm)
|
||||
%%
|
||||
|
||||
\setlength{\titleblockheight}{40mm}
|
||||
|
||||
\begin{document}
|
||||
\title{H5Pie: A Portable High Performance Parallel Data Interface for Electromagnetics Simulations Including Particles\thanks{
|
||||
This work (LBNL-57607) was supported by the Director, Office of Science, Office of Advanced Scientific Computing Research, of the U.S. Department of Energy under Contract No. DE-AC03-76SF00098 and the DOE SciDAC project on ``Advanced Computing for 21st Century Accelerator Science and Technology.''.
|
||||
}}
|
||||
|
||||
\author{A. Adelmann, A. Gsell, B. Oswald, PSI, Villigen, Switzerland \\
|
||||
R.D. Ryne, LBNL/AFR, Berkeley, California, USA\\
|
||||
W. Bethel, J.M. Shalf, C. Siegerist, LBNL/NERSC, Berkeley, California, USA}
|
||||
|
||||
\maketitle
|
||||
\begin{abstract}
|
||||
The very largest parallel particle simulations, for problems
|
||||
involving six dimensional phase space,
|
||||
generate vast quantities of data. It is desirable to
|
||||
store such enormous datasets efficiently and also to share data
|
||||
effortlessly between data analysis tools
|
||||
such as VisIt or ParaView
|
||||
among other groups who are working on particle-based accelerator
|
||||
simulations. We define a very simple file schema built on top of HDF5~\cite{hdf5hp}
|
||||
(Hierarchical Data Format version 5) as well as an API that simplifies
|
||||
the reading/writing of the data to the HDF5 file format. HDF5 offers a
|
||||
self-describing machine-independent binary file format that supports
|
||||
scalable parallel I/O performance for MPI codes on computer systems
|
||||
ranging from laptops to supercomputers.
|
||||
|
||||
H5Pie is actually a composition of three parts. On a very abstract view we have,
|
||||
H5Part which handles the macro particles of a simulation. H5Mesh defines the (spatial) geometry of the
|
||||
computational domain and H5Fields represents scalar and vector filds. (H5Pie = H5{\bf P} art + H5F{\bf i}eld+ H5M{\bf e}sh)
|
||||
|
||||
|
||||
The sample H5Pie
|
||||
API will be available for C, C++, and Fortran codes.
|
||||
The common file format will enable groups that
|
||||
use completely different simulation implementations to transparently share
|
||||
datasets.
|
||||
\end{abstract}
|
||||
|
||||
\section{Motivation}
|
||||
The motivation for this undertaking is to create a file format that is
|
||||
suitable for large-scale parallel simulation codes.
|
||||
A suitable data format must have the following properties:
|
||||
it must be a machine-independent binary representation that is
|
||||
self-describing, easily extensible, language independent, efficient
|
||||
(both for serial and parallel), and produces files that are seamlessly sharable
|
||||
between different programs. In the following sections we describe
|
||||
the motivation for these features and how they can be accomplished
|
||||
using the proposed implementation.
|
||||
|
||||
\subsection{Machine Independence}
|
||||
Processor architectures use different binary representations
|
||||
for data. While the IEEE 754 standard has decreased the number of
|
||||
differing floating point number represenations, byte-order still remains
|
||||
a source of incompatibility. While it is trivial to byte-swap a file from
|
||||
a programming standpoint, it creates a number of long-term file management
|
||||
difficulties for groups that are sharing or maintaining a repository of simulation
|
||||
data. Given files that store data structures with differently sized elements,
|
||||
one must know the storage format precisely in order to apply byte-swapping
|
||||
properly.
|
||||
HDF5 does not suffer from these problems because the file format is completely
|
||||
self-describing and the internal binary structures are all machine independent.
|
||||
The HDF5 library is able to convert data that is stored in any native machine
|
||||
represenation in the data file into a native binary representation in memory
|
||||
as part of the reading process with little performance penalty.
|
||||
|
||||
\subsection{Language Independence}
|
||||
The three most common languages used for implementing applications
|
||||
in the arena of computational sciences are
|
||||
Fortran, C and C++. The file format and associated API must hide
|
||||
differences in the binary file-storage conventions of these languages
|
||||
as well as offering native API bindings for each of these
|
||||
programming languages.
|
||||
|
||||
For instance, Fortran unformatted binary files contain integer fields
|
||||
at the beginning and the end of each record that describe the length
|
||||
of the record. The size of these integer tags is usually 32-bits, but some
|
||||
fortran compiler implementations will use larger tags in order to represent
|
||||
larger record sizes. C and C++ binary files have no such convention for
|
||||
record-oriented storage. The language-dependent differences in
|
||||
binary storage layout conventions
|
||||
can cause difficulties for scientists who wish to share data files between
|
||||
Fortran and C/C++ implementations of a code, or with visualization tools
|
||||
that are primarily written in C/C++. The API bindings and underlying file format
|
||||
provided by the H5Part API and the underlying HDF5 file format are able to
|
||||
hide these differences in order to provide symmetric access via all languages.
|
||||
|
||||
\subsection{Self-Describing}
|
||||
The data is accessed by names, for example, one might ask for `the
|
||||
column of data called $p_x$' -- affording a layer of file-layout independence.
|
||||
In other words, self-describing data is
|
||||
not accessed by a position in a file but by name of the datasets. Various attributes
|
||||
of the data that may be necessary to using it are available. For
|
||||
example, one can ask ``what are the units of column $p_x$?'.
|
||||
|
||||
There are a number of examples of self-describing file formats. Examples include HDF earlier HDF implementations leading up to HDF version 5 and the Unidata NetCDF format. Another
|
||||
very popular approach is the Self Describing Data Sets (SDDS) \cite{SDDS} although it
|
||||
is only serial in nature. HDF5 is a complete rewrite of the HDF file format that supports
|
||||
parallel I/O and offers a much leaner, more flexible interface.
|
||||
Because it is self-describing, the entire contents of an HDF5 file can be
|
||||
browsed and even converted to ASCII text, including XML syntax text files,
|
||||
using the built-in 'h5ls' and 'h5dump'
|
||||
tools without specific knowledge of the internal file format.
|
||||
|
||||
\begin{figure}[htb]
|
||||
\begin{minipage}[b]{0.5\textwidth}
|
||||
%\includegraphics[scale=0.095]{./partview1.eps}
|
||||
%\includegraphics[scale=0.097]{./density70.eps}
|
||||
\end{minipage}
|
||||
\caption{color: A common self-describing file format allows different codes to share a common set of visualization and data analysis tools. PartView and AVS/Express, pictured above, are able to read and display contents of an H5Part/HDF5 file written on any machine in any language, regardless of how many processors are used.}
|
||||
\label{fig:vis}
|
||||
\end{figure}
|
||||
|
||||
The primary advantage of accessing data and its attributes is that one
|
||||
can then construct more flexible data manipulation tools that are capable
|
||||
of surviving the natural evolution of file formats. Data formats can be extended
|
||||
to include additional information without breaking older file readers.
|
||||
Self-describing data contains all the information
|
||||
that analysis tools need to manipulate various types of data
|
||||
correctly. Two examples of such tools using the proposed file format
|
||||
are shown in Figure ~\ref{fig:vis} As a result, data exchange between different simulations tools is
|
||||
much simpler, robust and better defined by using self-describing data sets.
|
||||
|
||||
\subsection{High Performance}
|
||||
The HDF5 file format allows data elements to be written to disk in the
|
||||
native binary representation. The file format stores a description of
|
||||
the native data representation of the machine that wrote the data so
|
||||
that it can be automatically translated to the native binary
|
||||
representation of the machine that reading the data (eg. if the byte
|
||||
order differs). In contrast to XDR, where the data always gets
|
||||
translated to/from an intermediate machine-neutral format, the HDF5
|
||||
data conversion only occurs if the stored data represenation is
|
||||
different from the native binary representation of the machine that is
|
||||
reading the file, so there is no performance penalty if the machines
|
||||
have the compatible binary data formats. [ada: need work] In general, HDF5 offers
|
||||
performance that is very close to what can be achieved by writing an
|
||||
ad-hoc machine-dependent binary for F77 unformatted data file.
|
||||
|
||||
\subsection{Parallel I/O}
|
||||
HDF5 also supports parallel I/O capabilities for MPI programs.
|
||||
The naive approach to writing data from a parallel program is to
|
||||
write one file per processor. While this is simple to implement and
|
||||
very efficient on most cluster filesystems, it leads to file management
|
||||
headaches when it comes the time to analyze the data. One must either
|
||||
recombine these separate files into a single file or create ponderous
|
||||
user-interfaces that allow a data analysis application to read from a
|
||||
directory full of files instead of just one file.
|
||||
|
||||
Parallel I/O methods, allow you to write data into a single file from all
|
||||
of the tasks of a parallel program. The performance is typically lower
|
||||
than that of writing one-file-per-processor, but it makes data management
|
||||
much simpler after the program has finished. No additional recombining
|
||||
steps are required to make the file accessible by vis-tools or for
|
||||
restarting a simulation using a different number of processors.
|
||||
|
||||
Parallel HDF5 uses MPI-I/O for its low-level implementation. The
|
||||
mechanics of using MPI-I/O are all hidden from the user by our
|
||||
H5Part file API (the code looks nearly identical to reading/writing the data
|
||||
from a serial program). While the performance is not as good as
|
||||
writing one-file-per-processor, we demonstrate that writing files
|
||||
with Parallel HDF5 is consistently faster than writing the data
|
||||
in raw/native binary using the MPI-I/O library. This efficiency is
|
||||
made possible through sophisticated HDF5 tuning directives that
|
||||
control data alignment and caching within the HDF5 layer.
|
||||
Therefore, we argue that it would be difficult to match
|
||||
HDF5 performance even using a home-grown binary file format.
|
||||
|
||||
\section{H5Mesh File Organization and API}
|
||||
|
||||
\section{H5Field File Organization and API}
|
||||
|
||||
\section{H5Part File Organization and API}
|
||||
The proposed file storage format uses HDF5 for the low-level file
|
||||
storage and a simple API to provide a high-level interface to that
|
||||
file format. A programmer can either use the H5Part API to access
|
||||
the data files or write directly to the file format using some simple
|
||||
conventions for organizing and naming the objects stored in the
|
||||
file.
|
||||
|
||||
The HDF5 format, its benefits, and its file organization is decribed
|
||||
at \cite{hdf5hp}. The file format was also adopted by the DOE
|
||||
ASCI-VIEWS effort, so the library has been tuned and adapted to read
|
||||
and write data efficiently on large-scale parallel computing
|
||||
systems. We adopted HDF5 for our file storage needs because it offers
|
||||
all that is needed as stipulated in the motivation section.
|
||||
|
||||
We describe now the H5Part conventions for storing
|
||||
objects in the HDF5 file as well as some examples of the API.
|
||||
\subsection{H5Part File Organization}
|
||||
In order to store Particle Data in the HDF5 file format, we have
|
||||
formalized the hierarchical arrangement of the datasets and naming
|
||||
conventions for the groups and associated datasets. The sample H5Part API formally
|
||||
encodes these conventions in order to provide a simple and uniform
|
||||
way to access these files from C, C++, and Fortran codes. The API makes
|
||||
it easier to write very portable data adaptors for visualization tools in order to
|
||||
expand the number of tools available to access the data. Even so,
|
||||
anyone can use the HDF5 $h5ls$ utility to examine the organization
|
||||
of the H5Part files and even write their own HDF5-based interface for reading and writing the
|
||||
file format. The standards offered by the sample API are completely independent of the
|
||||
standard for organizing data within the file.
|
||||
|
||||
The file format supports the storage of multiple timesteps of
|
||||
datasets that contain multiple fields. The fields correspond to different properties of
|
||||
the particles at that particular time step -- for instance,
|
||||
the 3-dimensional cartesian position of the particles
|
||||
$(X,Y,Z)$ as well as the 3-dimensional phase of each
|
||||
particle $(PX,PY,PZ)$. These two degrees of freedom
|
||||
are organized such that the timesteps are groups (time groups) that are added sequentially
|
||||
to the root group (``/''). The fields are datasets that are nested within the
|
||||
time groups. The convention for naming the time group is $Particles<integer>$ where $<integer>$ is a monotonically increasing counter for the number of timesteps stored in the file.
|
||||
|
||||
The fields contained within a given time group are simply named for the property of the particle they represent. For instance, the phase of the particle stored in a simulation variable called 'px' is simply named $``px''$. The field names are user-defined and
|
||||
can be understood automatically by the visualization
|
||||
tools that read the file. The only other convention is that each time group must contain the same set of fields -- the contents of the fields will change, but the set of names for these fields must remain the same for all timesteps.
|
||||
|
||||
The fields can be either integer or real data types. Initially, the file format supports double precision float and 64-bit integers in order to simplify the requirements for file readers, but HDF5 is capable of automatically down-converting to 32-bit data types upon request. The API will be extended accordingly to support these conversions.
|
||||
|
||||
Finally, the file, the individual timesteps, and the individual data arrays can contain {\em attributes} that provide additional information about the data. For instance, the datasets can be annotated with attributes containing {\em units} for a given data field, simulation parameters, or code revision information. The {\em attributes} are key-value pairs where the $key$ is a string that is associated with the file, group, or dataset, and the $value$ is either a string, a real value, or an integer associated with that key.
|
||||
|
||||
%Visualization and data analysis tools can take advantage of this additional information if they are programmed to recognize it, but less-sophisticated tools can safely ignore it without compromising their ability to read the file format.
|
||||
|
||||
% ada: to philosophic for a 3 page paper, although it is very important and of course right!
|
||||
%The ability to ignore such information is arguably one of the most powerful capabilities of the HDF5 file format. Whereas changes to headers or data layout in conventional, non-self-describing file formats can render an older reader interface useless, one can continuously add new descriptive information to the HDF5 file without having any detrimental effect on readers that were designed to work with older versions of the file format. This provides enormous benefits for the long term maintenance and evolution of the file format.
|
||||
|
||||
\section{GENERAL FORM IN PSEUDOCODE}
|
||||
In Figure \ref{fig:usage} we show the very simple API for writing
|
||||
data. The API for reading is almost symmetric. It is also worth to
|
||||
note that there are minimal differences whether one read/write serial
|
||||
or in parallel. The API consists of a small number of C, C++ and
|
||||
Fortran functions and will be described elsewhere.
|
||||
In the parallel case the original domain decomposition can be used or
|
||||
the data can be decomposed according to the new number of processor
|
||||
nodes available.
|
||||
The resulting HDF5 file will contains a simple directory structure that can be navigated using the generic 'h5ls' utility;
|
||||
\begin{figure}[h!] \label{fig:sbendVect}
|
||||
\newsavebox{\gogo}
|
||||
\setbox\gogo=\hbox{%
|
||||
\begin{minipage}{0.4\textwidth}
|
||||
\small
|
||||
\begin{tabbing}
|
||||
111111\=aaaa\=aaaa\=aaaa\=\kill
|
||||
\texttt{if(not parallel);}\\
|
||||
\quad\texttt{filehandle=OpenFile(filename,mode)} \\
|
||||
\texttt{else}\\
|
||||
\quad\texttt{filehandle=OpenFile(filename,mode,mpicomm)} \\
|
||||
\texttt{SetNumberOfParticles(filehandle);}\\
|
||||
\texttt{loop(step=1,NSteps);}\\
|
||||
\quad\texttt{SetStep(filehandle,step);}\\
|
||||
\quad\texttt{WriteData(filehandle,fieldname1,data1);}\\
|
||||
\centerline{\texttt{{\bf write more data}}}\\
|
||||
\quad\texttt{WriteData(filehandle,fieldname<n>,data<n>);}\\
|
||||
\texttt{CloseFile(filehandle);}
|
||||
\end{tabbing}
|
||||
\end{minipage}
|
||||
}
|
||||
\fbox{\usebox{\gogo}}
|
||||
\caption{Usage of H5Part in pseudo-code}
|
||||
\label{fig:usage}
|
||||
\end{figure}
|
||||
|
||||
% \begin{figure}[h!] \label{fig:sbendVect}
|
||||
% \newsavebox{\gugu}
|
||||
% \setbox\gugu=\hbox{%
|
||||
% \begin{minipage}{0.4\textwidth}
|
||||
% \small
|
||||
% \begin{tabbing}
|
||||
% 111111\=aaaa\=aaaa\=aaaa\=\kill
|
||||
%\texttt{/Particles1/fieldname1 } \\
|
||||
%\texttt{/Particles1/fieldname2} \\
|
||||
%\texttt{ . . . } \\
|
||||
%\texttt{/Particles1/fieldname<n> } \\
|
||||
%\texttt{/Particles2/fieldname1} \\
|
||||
%\texttt{ . . .}\\
|
||||
%\texttt{ /Particles<nsteps>/fieldname<n>}
|
||||
%\end{tabbing}
|
||||
%\end{minipage}
|
||||
%}
|
||||
%\fbox{\usebox{\gugu}}
|
||||
%\end{figure}
|
||||
\vspace{-5mm}
|
||||
\section{PERFORMANCE}
|
||||
% [ada] We also have data for 4 procs
|
||||
% [ada] name for one file per proc
|
||||
Preliminary performance estimations, looking at global (GD) and local data (LD)
|
||||
rates, suggests that our HDF5 writing has a very good performance even
|
||||
with respect to raw mpi, as shown in Table \ref{tab:perf}.
|
||||
\begin{table}[h!]
|
||||
\begin{flushleft} \footnotesize
|
||||
\begin{tabular}{|l|l|l|}
|
||||
\hline
|
||||
\bf Mode & \bf GD [MB/s] & \bf LD [MB/s]\\
|
||||
\hline
|
||||
mpi-io (one file) & 241 & 3.7 \\
|
||||
\hline
|
||||
one file per proc & 1288 & 20 \\
|
||||
\hline
|
||||
H5Part/pHDFf5 (one file) & 773 & 12 \\
|
||||
\hline
|
||||
\end{tabular}
|
||||
\end{flushleft}
|
||||
\caption{\label{tab:perf}{64 IBM SP-3 nodes writing $51e6$ particles (6D). }}
|
||||
%, each having 6 double-precision floating point fields for 64 timesteps over 3 trials.}}
|
||||
\end{table}
|
||||
\vspace{-4mm}
|
||||
\section{Conclusions and Future Work}
|
||||
The file format will be extended in the near future to integrate fast bitmap indexing
|
||||
technology~\cite{DEX} in order to provide accelerated queries of data
|
||||
stored in the file. With fastbit technolgy, a user can efficiently extract subsets of data
|
||||
using compound query expressions such
|
||||
as {\it $(velocity > 1e6)$ AND $(0.4 < phase < 1.0)$}.
|
||||
%Such a query-driven approach offers advantages over scalable technologies aimed at visualizing ever-larger datasets.
|
||||
|
||||
We are also constantly tuning the performance of the parallel data
|
||||
file format implementation. We will also be porting the H5Part reader
|
||||
to a wider variety of visualization tools.
|
||||
%in order to expand the arena
|
||||
%of tools available for analyzing the stored particle data.
|
||||
\begin{thebibliography}{9} % Use for 1-9 references
|
||||
\bibitem{FPAT082}
|
||||
A. Adelmann, R.D Ryne, C. Siegerist, J. Shalf, "From Visualization to Data Mining With Large Datasets," PAC, 2005.
|
||||
\bibitem{hdf5hp}
|
||||
HDF5 Home Page, http://hdf.ncsa.uiuc.edu/HDF5.
|
||||
\bibitem{SDDS}
|
||||
Definitions and libraries for SDDS implementation may be found at the link http://www.aps.anl.gov/asd/oag/oagPackages.shtml.
|
||||
\bibitem{DEX}
|
||||
K. Stockinger, J. Shalf, W. Bethel, K. Wu. "DEX: Increasing the Capability of Scientific Data Analysis Pipelines by Using Efficient Bitmap Indices to Accelerate Scientific Visualization." Scientific and Statistical Database Management Conference (SDDBM), 2005.
|
||||
\end{thebibliography}
|
||||
|
||||
\end{document}
|
||||
@@ -0,0 +1,217 @@
|
||||
%%
|
||||
%% This file has been developed as a common template for papers
|
||||
%% destined for electronic production using Adobe Acrobat
|
||||
%% software for Accelerator Conferences
|
||||
%%
|
||||
%% See the JACo Website for more information
|
||||
%%
|
||||
%% http://www.cern.ch/accelconf/
|
||||
%%
|
||||
|
||||
% Special thanks to John Jowett and Michel Goossens from CERN and
|
||||
% Martin Comyn at TRIUMF for their significant contributions to
|
||||
% this class file over the period 1996 to 2000.
|
||||
% John Poole
|
||||
% March 2000
|
||||
|
||||
|
||||
% JAC2001.cls is a modified version of JAC2000.cls to produce indented
|
||||
% first paragraphs after section, subsection and subsubsection headings.
|
||||
%
|
||||
% Martin Comyn April 2001
|
||||
|
||||
\def\fileversion{1.2}
|
||||
\def\filedate{2003/03/10}
|
||||
\def\docdate {2003/03/10}
|
||||
|
||||
\newlength{\dsep}
|
||||
\newlength{\dwid}
|
||||
\newlength{\dht}
|
||||
\NeedsTeXFormat{LaTeX2e}
|
||||
\ProvidesClass{JAC2003}[\filedate\space Version \fileversion]
|
||||
\DeclareOption{acus}
|
||||
{\setlength{\dwid}{6mm}%
|
||||
\setlength{\dht}{-18mm}
|
||||
\setlength{\paperheight}{11in}
|
||||
\setlength{\paperwidth}{8.5in}
|
||||
\typeout{Setup for US LETTER PAPER}}
|
||||
\DeclareOption{aca4}
|
||||
{\setlength{\dwid}{0mm}%
|
||||
\setlength{\dht}{0mm}}
|
||||
\DeclareOption{boxit}
|
||||
%%
|
||||
%% This option draws a box on the output text with the correct margins
|
||||
%%
|
||||
{\special{!userdict begin /bop-hook{
|
||||
gsave
|
||||
newpath
|
||||
58 55 moveto
|
||||
58 737 lineto
|
||||
539 737 lineto
|
||||
539 55 lineto
|
||||
closepath
|
||||
stroke
|
||||
grestore
|
||||
}def end}}
|
||||
\DeclareOption*{\PassOptionsToClass{\CurrentOption}{article}}
|
||||
|
||||
\ExecuteOptions{aca4}
|
||||
\ProcessOptions
|
||||
|
||||
\LoadClass[10pt]{article}
|
||||
%%
|
||||
%% Using Times fonts produces a Uniform, compact document
|
||||
%% suitable for the Acrobat Software and printable anywhere.
|
||||
%%
|
||||
%% In a 'modern' TeX installation
|
||||
%% e.g TeXLive Version 3 or later (more information on the JACo Website)
|
||||
%% one can use the following command
|
||||
%%
|
||||
|
||||
\renewcommand{\rmdefault}{ptm}
|
||||
|
||||
%%
|
||||
%% Older installations may require
|
||||
%% \RequirePackage{times}
|
||||
%%
|
||||
\typeout{------------------------------------------------------------------------}
|
||||
\typeout{LaTeX2e Class file for Accelerator Conference publication for LaTeX2e users}
|
||||
\typeout{ }
|
||||
\typeout{Use the boxit option to draw a box on page showing the correct margins}
|
||||
\typeout{ }
|
||||
\typeout{Itemize, Enumerate and Description environments are compact versions}
|
||||
\typeout{------------------------------------------------------------------------}
|
||||
\typeout{ }
|
||||
|
||||
%
|
||||
% DIMENSION OF TEXT:
|
||||
|
||||
\setlength{\textheight}{241mm}
|
||||
\setlength{\textwidth}{170mm}
|
||||
\setlength{\topmargin}{23mm}
|
||||
\addtolength{\topmargin}{\dht}
|
||||
\setlength{\oddsidemargin}{20mm}
|
||||
\setlength{\evensidemargin}{20mm}
|
||||
\setlength{\columnsep}{5mm}
|
||||
|
||||
|
||||
\hoffset -25.4mm
|
||||
\voffset -25.4mm
|
||||
|
||||
\columnseprule 0pt % Width of rule between columns.
|
||||
|
||||
% Use Michel Goossens' dense lists
|
||||
% Prevent infinite loops
|
||||
|
||||
\let\Otemize =\itemize
|
||||
\let\Onumerate =\enumerate
|
||||
\let\Oescription =\description
|
||||
% Zero the vertical spacing parameters
|
||||
\def\Nospacing{\itemsep=0pt\topsep=0pt\partopsep=0pt\parskip=0pt\parsep=0pt}
|
||||
% Redefine the environments in terms of the original values
|
||||
\newenvironment{Itemize}{\Otemize\Nospacing}{\endlist}
|
||||
\newenvironment{Enumerate}{\Onumerate\Nospacing}{\endlist}
|
||||
\newenvironment{Description}{\Oescription\Nospacing}{\endlist}
|
||||
|
||||
\renewcommand{\topfraction}{.95}
|
||||
\renewcommand{\bottomfraction}{.95}
|
||||
\renewcommand{\textfraction}{0.1}
|
||||
\renewcommand{\floatpagefraction}{0.8}
|
||||
|
||||
\def\@oddhead{}\def\@evenhead{}
|
||||
\def\@oddfoot{}
|
||||
\def\@evenfoot{\@oddfoot}
|
||||
|
||||
%-----------------------------------------------------------------------
|
||||
% We acknowledge the borrowing of the clever part of
|
||||
% Steven Gildea's definition of \section
|
||||
% from geophysi.sty.
|
||||
%
|
||||
% \section is tricky because we want to both support \section* and have
|
||||
% the section title uppercased.
|
||||
|
||||
\def\section{\secdef\@sectionb\@sections}
|
||||
\def\@sectionb[#1]#2{\@sections{#2}}
|
||||
\def\@sections#1{\@startsection {section}{1}{\z@}
|
||||
{2.8ex plus 0.8ex minus .1ex}{1.5ex plus .2ex}
|
||||
{\large\bf\boldmath\centering}{\uppercase{#1}}}
|
||||
% Should there be any problem with this, we can revert to the following
|
||||
% but then the onus is on the user to type the argument of \section in
|
||||
% uppercase in the input file.
|
||||
%
|
||||
%\def\section{\@startsection {section}{1}{\z@}{2.8ex plus 0.8ex minus.1ex}
|
||||
% {1.5ex plus .2ex}{\large\bf\boldmath\centering}}
|
||||
|
||||
\def\subsection{\@startsection{subsection}{2}{\z@}{2.6ex plus .8ex minus
|
||||
.17ex}{1.2ex plus .17ex}{\large\it}}
|
||||
\def\subsubsection{\@startsection{subsubsection}{3}{\parindent}
|
||||
{2.5ex plus .7ex minus .17ex}{-1em}{\normalsize\bf}}
|
||||
\def\paragraph{\@startsection
|
||||
{paragraph}{4}{\z@}{2.5ex plus .7ex minus .17ex}{-1em}{\normalsize\it}}
|
||||
\def\subparagraph{\@startsection
|
||||
{subparagraph}{4}{\parindent}{2.25ex plus .7ex minus
|
||||
.17ex}{-1em}{\normalsize\bf}}
|
||||
|
||||
\setcounter{secnumdepth}{0}
|
||||
|
||||
% This definition of \maketitle taken from article.sty, and has been
|
||||
% somewhat modified.
|
||||
|
||||
\def\maketitle{\par
|
||||
\begingroup
|
||||
\def\thefootnote{\fnsymbol{footnote}}
|
||||
\def\@makefnmark{\hbox
|
||||
to 5pt{$^{\@thefnmark}$\hss}}
|
||||
\twocolumn[\@maketitle]
|
||||
\@thanks
|
||||
\endgroup
|
||||
\setcounter{footnote}{0}
|
||||
\let\maketitle\relax
|
||||
\let\@maketitle\relax
|
||||
\gdef\@thanks{}\gdef\@author{}\gdef\@title{}\let\thanks\relax}
|
||||
|
||||
\newlength{\titleblockheight} % so user can change it if need be
|
||||
\setlength{\titleblockheight}{3.5cm}
|
||||
|
||||
|
||||
\def\@maketitle{\vbox to \titleblockheight {\hsize\textwidth
|
||||
\linewidth\hsize \vskip 3pt \centering
|
||||
{\Large\bf \@title \par}
|
||||
\vskip 2em % Vertical space after title.
|
||||
{\large\begin{tabular}[t]{@{}c@{}}\@author \end{tabular}\par}
|
||||
\vfil}}
|
||||
|
||||
|
||||
% The \copyrightspace command is used to produce a blank space in the first
|
||||
% column where a copyright notice may go. It works by producing a
|
||||
% blank footnote of the appropriate size. Note that it should appear
|
||||
% after any \footnote commands that produce footnotes for the first
|
||||
% column. Adjusted to leave just 1cm.
|
||||
|
||||
\def\copyrightspace{\footnotetext[0]{\mbox{}\vrule height 1cm width 0pt}}
|
||||
|
||||
\def\abstract{\subsection*{Abstract}}
|
||||
\def\endabstract{\par}
|
||||
|
||||
% Redefine to use smaller fonts
|
||||
\def\thebibliography#1{\setlength{\itemsep}{0pt}\setlength{\parsep}{0pt}
|
||||
\section*{REFERENCES\@mkboth
|
||||
{REFERENCES}{REFERENCES}}\small\list
|
||||
{[\arabic{enumi}]}{\settowidth\labelwidth{[#1]}\leftmargin\labelwidth
|
||||
\advance\leftmargin\labelsep
|
||||
\usecounter{enumi}}
|
||||
\def\newblock{\hskip .11em plus .33em minus .07em}
|
||||
\sloppy\clubpenalty4000\widowpenalty4000
|
||||
\sfcode`\.=1000\relax}
|
||||
|
||||
\let\endthebibliography=\endlist
|
||||
|
||||
\twocolumn
|
||||
\sloppy
|
||||
\parindent 1em
|
||||
\leftmargini 2em
|
||||
\leftmargin\leftmargini
|
||||
\leftmarginv .5em
|
||||
\leftmarginvi .5em
|
||||
\flushbottom
|
||||
%-----------------------------------------------------------------------
|
||||
Executable
+14
@@ -0,0 +1,14 @@
|
||||
#################################################
|
||||
##BEGIN OF makefile "makefile" - using the gnu-compiler g++
|
||||
##This file is used by the Make command.
|
||||
###################################################
|
||||
|
||||
FILE=H5xxx
|
||||
|
||||
all: $(FILE).tex
|
||||
latex $(FILE).tex
|
||||
#bibtex $(FILE)
|
||||
dvips -j0 $(FILE).dvi -o $(FILE).ps
|
||||
# dvips $(FILE).dvi -o $(FILE).ps -x 1200 -O 10mm,15mm
|
||||
clean:
|
||||
rm *~ *.bbl *.aux *.blg *.log *.dvi *.ps
|
||||
Executable
+54
@@ -0,0 +1,54 @@
|
||||
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
|
||||
<html>
|
||||
<head>
|
||||
<title>H5Part, Logical Internal HDF5 File Layout</title>
|
||||
<meta http-equiv="Content-Type" content="text/html; charset=us-ascii">
|
||||
<meta name="keywords" content="scientific visualization">
|
||||
<meta name="sitemap" content="put a brief descriptive phrase here that will show up in the site map:foo">
|
||||
|
||||
|
||||
<div id="maincenter">
|
||||
<font face="arial,helvetica"><h1>H5Part: Logical Internal HDF5 File Layout</h1></font>
|
||||
<P>
|
||||
HDF5 is extremely flexible in the sense that it allows the user to define a higher level data model to describe domain-specific data relationships. This flexibility however makes it necessary to develop an agreement on the logical layout of the data. The H5Part data model consists of Particle groups corresponding to the simulation time steps, each with seven datasets corresponding to x, px, y, py, z, pz, id for each particle. Attributes can be added to the file and to the datasets.
|
||||
</P>
|
||||
<center><img src="layout.png"></center>
|
||||
<PRE>
|
||||
HDF5 "parttest.h5" {
|
||||
GROUP "/" {
|
||||
GROUP "Particles#0" {
|
||||
DATASET "id" {
|
||||
DATATYPE H5T_STD_I64LE
|
||||
DATASPACE SIMPLE { ( 10 ) / ( 10 ) }
|
||||
}
|
||||
DATASET "px" {
|
||||
DATATYPE H5T_IEEE_F64LE
|
||||
DATASPACE SIMPLE { ( 10 ) / ( 10 ) }
|
||||
}
|
||||
DATASET "py" {
|
||||
DATATYPE H5T_IEEE_F64LE
|
||||
DATASPACE SIMPLE { ( 10 ) / ( 10 ) }
|
||||
}
|
||||
DATASET "pz" {
|
||||
DATATYPE H5T_IEEE_F64LE
|
||||
DATASPACE SIMPLE { ( 10 ) / ( 10 ) }
|
||||
}
|
||||
DATASET "x" {
|
||||
DATATYPE H5T_IEEE_F64LE
|
||||
DATASPACE SIMPLE { ( 10 ) / ( 10 ) }
|
||||
}
|
||||
DATASET "y" {
|
||||
DATATYPE H5T_IEEE_F64LE
|
||||
DATASPACE SIMPLE { ( 10 ) / ( 10 ) }
|
||||
}
|
||||
DATASET "z" {
|
||||
DATATYPE H5T_IEEE_F64LE
|
||||
DATASPACE SIMPLE { ( 10 ) / ( 10 ) }
|
||||
}
|
||||
}
|
||||
</PRE>
|
||||
<P>
|
||||
See <a href="http://www-vis.lbl.gov/Publications/2002/hdf5.pdf">hdf5.pdf</a> for an introduction on the use of HDF5.
|
||||
</P>
|
||||
</div>
|
||||
|
||||
@@ -1,14 +0,0 @@
|
||||
EXTRA_DIST = \
|
||||
Doxyfile \
|
||||
H5.dox
|
||||
|
||||
all:
|
||||
|
||||
doc:
|
||||
|
||||
doxydoc:
|
||||
doxygen
|
||||
|
||||
clean-local:
|
||||
$(RM) -r ReferencePages TWiki
|
||||
$(RM) *~
|
||||
File diff suppressed because it is too large
Load Diff
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Load Diff
@@ -0,0 +1,146 @@
|
||||
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
|
||||
<html><head><meta http-equiv="Content-Type" content="text/html;charset=iso-8859-1">
|
||||
<title>H5Part: H5Part.h Source File</title>
|
||||
<link href="doxygen.css" rel="stylesheet" type="text/css">
|
||||
</head><body>
|
||||
<!-- Generated by Doxygen 1.4.4 -->
|
||||
<div class="qindex"><a class="qindex" href="index.html">Main Page</a> | <a class="qindex" href="annotated.html">Class List</a> | <a class="qindex" href="files.html">File List</a> | <a class="qindex" href="functions.html">Class Members</a> | <a class="qindex" href="globals.html">File Members</a></div>
|
||||
<h1>H5Part.h</h1><a href="H5Part_8h.html">Go to the documentation of this file.</a><div class="fragment"><pre class="fragment"><a name="l00001"></a>00001 <span class="preprocessor">#ifndef _H5Part_H_</span>
|
||||
<a name="l00002"></a>00002 <span class="preprocessor"></span><span class="preprocessor">#define _H5Part_H_</span>
|
||||
<a name="l00003"></a>00003 <span class="preprocessor"></span>
|
||||
<a name="l00004"></a>00004 <span class="preprocessor">#include <hdf5.h></span>
|
||||
<a name="l00005"></a>00005 <span class="preprocessor">#ifdef PARALLEL_IO</span>
|
||||
<a name="l00006"></a>00006 <span class="preprocessor"></span><span class="preprocessor">#include <mpi.h></span>
|
||||
<a name="l00007"></a>00007 <span class="preprocessor">#endif</span>
|
||||
<a name="l00008"></a>00008 <span class="preprocessor"></span>
|
||||
<a name="l00016"></a><a class="code" href="structH5PartFile.html">00016</a> <span class="keyword">typedef</span> <span class="keyword">struct </span><a class="code" href="structH5PartFile.html">H5PartFile</a> {
|
||||
<a name="l00017"></a><a class="code" href="structH5PartFile.html#o0">00017</a> hid_t <a class="code" href="structH5PartFile.html#o0">file</a>;
|
||||
<a name="l00018"></a><a class="code" href="structH5PartFile.html#o1">00018</a> <span class="keywordtype">int</span> <a class="code" href="structH5PartFile.html#o1">timestep</a>;
|
||||
<a name="l00019"></a>00019
|
||||
<a name="l00020"></a><a class="code" href="structH5PartFile.html#o2">00020</a> hid_t <a class="code" href="structH5PartFile.html#o2">timegroup</a>;
|
||||
<a name="l00021"></a><a class="code" href="structH5PartFile.html#o3">00021</a> hid_t <a class="code" href="structH5PartFile.html#o3">properties</a>;
|
||||
<a name="l00022"></a><a class="code" href="structH5PartFile.html#o4">00022</a> hsize_t <a class="code" href="structH5PartFile.html#o4">nparticles</a>;
|
||||
<a name="l00023"></a><a class="code" href="structH5PartFile.html#o5">00023</a> hid_t <a class="code" href="structH5PartFile.html#o5">shape</a>;
|
||||
<a name="l00024"></a><a class="code" href="structH5PartFile.html#o6">00024</a> <span class="keywordtype">unsigned</span> <a class="code" href="structH5PartFile.html#o6">mode</a>;
|
||||
<a name="l00025"></a><a class="code" href="structH5PartFile.html#o7">00025</a> <span class="keywordtype">int</span> <a class="code" href="structH5PartFile.html#o7">maxstep</a>;
|
||||
<a name="l00026"></a><a class="code" href="structH5PartFile.html#o8">00026</a> hid_t <a class="code" href="structH5PartFile.html#o8">xfer_prop</a>,<a class="code" href="structH5PartFile.html#o9">create_prop</a>,<a class="code" href="structH5PartFile.html#o10">access_prop</a>;
|
||||
<a name="l00027"></a><a class="code" href="structH5PartFile.html#o12">00027</a> hid_t <a class="code" href="structH5PartFile.html#o11">diskshape</a>,<a class="code" href="structH5PartFile.html#o12">memshape</a>; <span class="comment">/* for parallel I/O (this is on-disk) H5S_ALL </span>
|
||||
<a name="l00028"></a>00028 <span class="comment"> if serial I/O */</span>
|
||||
<a name="l00029"></a><a class="code" href="structH5PartFile.html#o13">00029</a> <span class="keywordtype">long</span> <span class="keywordtype">long</span> <a class="code" href="structH5PartFile.html#o13">viewstart</a>,<a class="code" href="structH5PartFile.html#o14">viewend</a>; <span class="comment">/* -1 if no view is available: A "view" looks at a subset of the data. */</span>
|
||||
<a name="l00030"></a>00030
|
||||
<a name="l00031"></a>00031 <span class="preprocessor">#ifdef PARALLEL_IO</span>
|
||||
<a name="l00032"></a>00032 <span class="preprocessor"></span> <span class="keywordtype">long</span> <span class="keywordtype">long</span> *pnparticles; <span class="comment">/* the number of particles in each processor.</span>
|
||||
<a name="l00033"></a>00033 <span class="comment"> With respect to the "VIEW", these numbers</span>
|
||||
<a name="l00034"></a>00034 <span class="comment"> can be regarded as non-overlapping subsections</span>
|
||||
<a name="l00035"></a>00035 <span class="comment"> of the particle array stored in the file.</span>
|
||||
<a name="l00036"></a>00036 <span class="comment"> So they can be used to compute the offset of</span>
|
||||
<a name="l00037"></a>00037 <span class="comment"> the view for each processor */</span>
|
||||
<a name="l00038"></a>00038 MPI_Comm comm;
|
||||
<a name="l00039"></a>00039 <span class="keywordtype">int</span> nprocs,myproc;
|
||||
<a name="l00040"></a>00040 <span class="preprocessor">#endif</span>
|
||||
<a name="l00041"></a>00041 <span class="preprocessor"></span>}<a class="code" href="structH5PartFile.html">H5PartFile</a>;
|
||||
<a name="l00042"></a>00042
|
||||
<a name="l00043"></a><a class="code" href="H5Part_8h.html#a0">00043</a> <span class="preprocessor">#define H5PART_READ 0x01</span>
|
||||
<a name="l00044"></a><a class="code" href="H5Part_8h.html#a1">00044</a> <span class="preprocessor"></span><span class="preprocessor">#define H5PART_WRITE 0x02</span>
|
||||
<a name="l00045"></a>00045 <span class="preprocessor"></span>
|
||||
<a name="l00046"></a>00046 <span class="comment">/*========== File Opening/Closing ===============*/</span>
|
||||
<a name="l00047"></a>00047 <span class="preprocessor">#ifdef PARALLEL_IO</span>
|
||||
<a name="l00048"></a>00048 <span class="preprocessor"></span><span class="preprocessor">#include <mpi.h></span>
|
||||
<a name="l00049"></a>00049 <a class="code" href="structH5PartFile.html">H5PartFile</a> *<a class="code" href="H5Part_8c.html#a3">H5PartOpenFileParallel</a>(<span class="keyword">const</span> <span class="keywordtype">char</span> *filename,
|
||||
<a name="l00050"></a>00050 <span class="keywordtype">unsigned</span> flags,
|
||||
<a name="l00051"></a>00051 MPI_Comm communicator);
|
||||
<a name="l00052"></a>00052 <span class="preprocessor">#endif</span>
|
||||
<a name="l00053"></a><a class="code" href="H5Part_8h.html#a2">00053</a> <span class="preprocessor"></span><span class="preprocessor">#define H5PartOpenFileSerial(x,y) H5PartOpenFile(x,y)</span>
|
||||
<a name="l00054"></a>00054 <span class="preprocessor"></span>
|
||||
<a name="l00055"></a>00055 <a class="code" href="structH5PartFile.html">H5PartFile</a> *<a class="code" href="H5Part_8c.html#a4">H5PartOpenFile</a>(<span class="keyword">const</span> <span class="keywordtype">char</span> *filename, <span class="comment">/* name of datafile */</span>
|
||||
<a name="l00056"></a>00056 <span class="keywordtype">unsigned</span> flags); <span class="comment">/* H5PART_READ | H5PART_WRITE */</span>
|
||||
<a name="l00057"></a>00057 <span class="keywordtype">int</span> <a class="code" href="H5Part_8c.html#a5">H5PartFileIsValid</a>(<a class="code" href="structH5PartFile.html">H5PartFile</a> *f);
|
||||
<a name="l00058"></a>00058 <span class="keywordtype">void</span> <a class="code" href="H5Part_8c.html#a6">H5PartCloseFile</a>(<a class="code" href="structH5PartFile.html">H5PartFile</a> *f);
|
||||
<a name="l00059"></a>00059
|
||||
<a name="l00060"></a>00060
|
||||
<a name="l00061"></a>00061 <span class="comment">/*============== File Writing Functions ==================== */</span>
|
||||
<a name="l00062"></a>00062 <span class="keywordtype">void</span> <a class="code" href="H5Part_8c.html#a7">H5PartSetNumParticles</a>(<a class="code" href="structH5PartFile.html">H5PartFile</a> *f,<span class="keywordtype">long</span> <span class="keywordtype">long</span> nparticles);
|
||||
<a name="l00063"></a>00063 <span class="keywordtype">int</span> <a class="code" href="H5Part_8c.html#a8">H5PartWriteDataFloat64</a>(<a class="code" href="structH5PartFile.html">H5PartFile</a> *f,<span class="keywordtype">char</span> *name,<span class="keywordtype">double</span> *array);
|
||||
<a name="l00064"></a>00064 <span class="keywordtype">int</span> <a class="code" href="H5Part_8c.html#a9">H5PartWriteDataInt64</a>(<a class="code" href="structH5PartFile.html">H5PartFile</a> *f,<span class="keywordtype">char</span> *name,<span class="keywordtype">long</span> <span class="keywordtype">long</span> *array);
|
||||
<a name="l00065"></a>00065
|
||||
<a name="l00066"></a>00066 <span class="comment">/*================== File Reading Routines =================*/</span>
|
||||
<a name="l00067"></a>00067 <span class="keywordtype">void</span> <a class="code" href="H5Part_8c.html#a24">H5PartSetStep</a>(<a class="code" href="structH5PartFile.html">H5PartFile</a> *f, <span class="comment">/* file handle */</span>
|
||||
<a name="l00068"></a>00068 <span class="keywordtype">int</span> step); <span class="comment">/* current timestep to select (0 to n-1) */</span>
|
||||
<a name="l00069"></a>00069 <span class="keywordtype">int</span> <a class="code" href="H5Part_8c.html#a27">H5PartGetNumSteps</a>(<a class="code" href="structH5PartFile.html">H5PartFile</a> *f);
|
||||
<a name="l00070"></a>00070 <span class="keywordtype">int</span> <a class="code" href="H5Part_8c.html#a28">H5PartGetNumDatasets</a>(<a class="code" href="structH5PartFile.html">H5PartFile</a> *f);
|
||||
<a name="l00071"></a>00071 <span class="keywordtype">int</span> <a class="code" href="H5Part_8c.html#a29">H5PartGetDatasetName</a>(<a class="code" href="structH5PartFile.html">H5PartFile</a> *f,<span class="keywordtype">int</span> index,<span class="keywordtype">char</span> *name,<span class="keywordtype">int</span> maxlen);
|
||||
<a name="l00072"></a>00072 <span class="keywordtype">long</span> <span class="keywordtype">long</span> <a class="code" href="H5Part_8c.html#a33">H5PartGetNumParticles</a>(<a class="code" href="structH5PartFile.html">H5PartFile</a> *f);
|
||||
<a name="l00073"></a>00073 <span class="keywordtype">void</span> <a class="code" href="H5Part_8c.html#a34">H5PartSetView</a>(<a class="code" href="structH5PartFile.html">H5PartFile</a> *f,<span class="keywordtype">long</span> <span class="keywordtype">long</span> start,<span class="keywordtype">long</span> <span class="keywordtype">long</span> end);
|
||||
<a name="l00074"></a><a class="code" href="H5Part_8h.html#a3">00074</a> <span class="preprocessor">#define H5PartResetView(f) H5PartSetView(f,-1,-1)</span>
|
||||
<a name="l00075"></a><a class="code" href="H5Part_8h.html#a4">00075</a> <span class="preprocessor"></span><span class="preprocessor">#define H5PartHasView(f) ((f->viewstart<0||f->viewend<0)?0:1)</span>
|
||||
<a name="l00076"></a>00076 <span class="preprocessor"></span><span class="keywordtype">int</span> <a class="code" href="H5Part_8c.html#a35">H5PartGetView</a>(<a class="code" href="structH5PartFile.html">H5PartFile</a> *f,<span class="keywordtype">long</span> <span class="keywordtype">long</span> *start,<span class="keywordtype">long</span> <span class="keywordtype">long</span> *end);
|
||||
<a name="l00077"></a>00077 <span class="keywordtype">void</span> <a class="code" href="H5Part_8c.html#a36">H5PartSetCanonicalView</a>(<a class="code" href="structH5PartFile.html">H5PartFile</a> *f);
|
||||
<a name="l00078"></a>00078
|
||||
<a name="l00079"></a>00079 <span class="keywordtype">int</span> <a class="code" href="H5Part_8c.html#a37">H5PartReadDataFloat64</a>(<a class="code" href="structH5PartFile.html">H5PartFile</a> *f,
|
||||
<a name="l00080"></a>00080 <span class="keywordtype">char</span> *name, <span class="comment">/* name of the array to read</span>
|
||||
<a name="l00081"></a>00081 <span class="comment"> "x"=position in x direction (y,z)</span>
|
||||
<a name="l00082"></a>00082 <span class="comment"> "vx"=velocity in x directio (y,z)</span>
|
||||
<a name="l00083"></a>00083 <span class="comment"> "px"=position in x dir (y,z) */</span>
|
||||
<a name="l00084"></a>00084 <span class="keywordtype">double</span> *array); <span class="comment">/* array to read data into */</span>
|
||||
<a name="l00085"></a>00085 <span class="keywordtype">int</span> <a class="code" href="H5Part_8c.html#a38">H5PartReadDataInt64</a>(<a class="code" href="structH5PartFile.html">H5PartFile</a> *f,
|
||||
<a name="l00086"></a>00086 <span class="keywordtype">char</span> *name, <span class="comment">/* name of the array to read</span>
|
||||
<a name="l00087"></a>00087 <span class="comment"> "x"=position in x direction (y,z)</span>
|
||||
<a name="l00088"></a>00088 <span class="comment"> "vx"=velocity in x directio (y,z)</span>
|
||||
<a name="l00089"></a>00089 <span class="comment"> "px"=position in x dir (y,z) */</span>
|
||||
<a name="l00090"></a>00090 <span class="keywordtype">long</span> <span class="keywordtype">long</span> *array); <span class="comment">/* array to read data into */</span>
|
||||
<a name="l00091"></a>00091
|
||||
<a name="l00092"></a>00092 <span class="comment">/* the following is a back-door for extensions to the data writing */</span>
|
||||
<a name="l00093"></a>00093 <span class="preprocessor">#if 0</span>
|
||||
<a name="l00094"></a>00094 <span class="preprocessor"></span><span class="keywordtype">int</span> H5PartReadData(<a class="code" href="structH5PartFile.html">H5PartFile</a> *f,<span class="keywordtype">char</span> *name,<span class="keywordtype">void</span> *array,hid_t type);
|
||||
<a name="l00095"></a>00095 <span class="keywordtype">int</span> H5PartWriteData(<a class="code" href="structH5PartFile.html">H5PartFile</a> *f,<span class="keywordtype">char</span> *name,<span class="keywordtype">void</span> *array,hid_t type);
|
||||
<a name="l00096"></a>00096 <span class="preprocessor">#endif</span>
|
||||
<a name="l00097"></a>00097 <span class="preprocessor"></span><span class="keywordtype">int</span> <a class="code" href="H5Part_8c.html#a39">H5PartReadParticleStep</a>(<a class="code" href="structH5PartFile.html">H5PartFile</a> *f, <span class="comment">/* filehandle */</span>
|
||||
<a name="l00098"></a>00098 <span class="keywordtype">int</span> step, <span class="comment">/* selects timestep to read from*/</span>
|
||||
<a name="l00099"></a>00099 <span class="keywordtype">double</span> *x,<span class="keywordtype">double</span> *y,<span class="keywordtype">double</span> *z, <span class="comment">/* particle positions */</span>
|
||||
<a name="l00100"></a>00100 <span class="keywordtype">double</span> *px,<span class="keywordtype">double</span> *py,<span class="keywordtype">double</span> *pz, <span class="comment">/* particle momenta */</span>
|
||||
<a name="l00101"></a>00101 <span class="keywordtype">long</span> <span class="keywordtype">long</span> *<span class="keywordtype">id</span>); <span class="comment">/* and phase */</span>
|
||||
<a name="l00102"></a>00102 <span class="comment">/**********==============Attributes Interface============***************/</span>
|
||||
<a name="l00103"></a>00103 <span class="comment">/* currently there is file attributes: Attributes bound to the file</span>
|
||||
<a name="l00104"></a>00104 <span class="comment"> and step attributes which are bound to the current timestep. You </span>
|
||||
<a name="l00105"></a>00105 <span class="comment"> must set the timestep explicitly before writing the attributes (just</span>
|
||||
<a name="l00106"></a>00106 <span class="comment"> as you must do when you write a new dataset. Currently there are no</span>
|
||||
<a name="l00107"></a>00107 <span class="comment"> attributes that are bound to a particular data array, but this could</span>
|
||||
<a name="l00108"></a>00108 <span class="comment"> easily be done if required.</span>
|
||||
<a name="l00109"></a>00109 <span class="comment">*/</span>
|
||||
<a name="l00110"></a>00110 <span class="keywordtype">int</span> <a class="code" href="H5Part_8c.html#a12">H5PartWriteStepAttrib</a>(<a class="code" href="structH5PartFile.html">H5PartFile</a> *f,<span class="keywordtype">char</span> *name,
|
||||
<a name="l00111"></a>00111 hid_t type,<span class="keywordtype">void</span> *attrib,<span class="keywordtype">int</span> nelem);
|
||||
<a name="l00112"></a>00112 <span class="keywordtype">int</span> <a class="code" href="H5Part_8c.html#a14">H5PartWriteFileAttrib</a>(<a class="code" href="structH5PartFile.html">H5PartFile</a> *f,<span class="keywordtype">char</span> *name,
|
||||
<a name="l00113"></a>00113 hid_t type,<span class="keywordtype">void</span> *attrib,<span class="keywordtype">int</span> nelem);
|
||||
<a name="l00114"></a>00114 <span class="keywordtype">int</span> <a class="code" href="H5Part_8c.html#a13">H5PartWriteAttrib</a>(<a class="code" href="structH5PartFile.html">H5PartFile</a> *f,<span class="keywordtype">char</span> *name,
|
||||
<a name="l00115"></a>00115 hid_t type,<span class="keywordtype">void</span> *attrib,<span class="keywordtype">int</span> nelem); <span class="comment">/* this should be deprecated */</span>
|
||||
<a name="l00116"></a>00116
|
||||
<a name="l00117"></a>00117 <span class="keywordtype">int</span> <a class="code" href="H5Part_8c.html#a10">H5PartWriteFileAttribString</a>(<a class="code" href="structH5PartFile.html">H5PartFile</a> *f,<span class="keywordtype">char</span> *name,
|
||||
<a name="l00118"></a>00118 <span class="keywordtype">char</span> *attrib);
|
||||
<a name="l00119"></a>00119 <span class="keywordtype">int</span> <a class="code" href="H5Part_8c.html#a11">H5PartWriteStepAttribString</a>(<a class="code" href="structH5PartFile.html">H5PartFile</a> *f,<span class="keywordtype">char</span> *name,
|
||||
<a name="l00120"></a>00120 <span class="keywordtype">char</span> *attrib);
|
||||
<a name="l00121"></a>00121 <span class="keywordtype">int</span> <a class="code" href="H5Part_8c.html#a16">H5PartGetNumStepAttribs</a>(<a class="code" href="structH5PartFile.html">H5PartFile</a> *f); <span class="comment">/* for current filestep */</span>
|
||||
<a name="l00122"></a>00122 <span class="keywordtype">int</span> <a class="code" href="H5Part_8c.html#a17">H5PartGetNumFileAttribs</a>(<a class="code" href="structH5PartFile.html">H5PartFile</a> *f);
|
||||
<a name="l00123"></a>00123 <span class="keywordtype">void</span> <a class="code" href="H5Part_8c.html#a19">H5PartGetStepAttribInfo</a>(<a class="code" href="structH5PartFile.html">H5PartFile</a> *f,<span class="keywordtype">int</span> idx,
|
||||
<a name="l00124"></a>00124 <span class="keywordtype">char</span> *name,size_t maxnamelen,
|
||||
<a name="l00125"></a>00125 hid_t *type,<span class="keywordtype">int</span> *nelem);
|
||||
<a name="l00126"></a>00126 <span class="keywordtype">void</span> <a class="code" href="H5Part_8c.html#a20">H5PartGetFileAttribInfo</a>(<a class="code" href="structH5PartFile.html">H5PartFile</a> *f,<span class="keywordtype">int</span> idx,
|
||||
<a name="l00127"></a>00127 <span class="keywordtype">char</span> *name,size_t maxnamelen,
|
||||
<a name="l00128"></a>00128 hid_t *type,<span class="keywordtype">int</span> *nelem);
|
||||
<a name="l00129"></a>00129 <span class="keywordtype">int</span> <a class="code" href="H5Part_8c.html#a21">H5PartReadStepAttrib</a>(<a class="code" href="structH5PartFile.html">H5PartFile</a> *f,<span class="keywordtype">char</span> *name,<span class="keywordtype">void</span> *data);
|
||||
<a name="l00130"></a>00130 <span class="keywordtype">void</span> <a class="code" href="H5Part_8c.html#a22">H5PartReadAttrib</a>(<a class="code" href="structH5PartFile.html">H5PartFile</a> *f,<span class="keywordtype">char</span> *name,<span class="keywordtype">void</span> *data);
|
||||
<a name="l00131"></a>00131 <span class="keywordtype">int</span> <a class="code" href="H5Part_8c.html#a23">H5PartReadFileAttrib</a>(<a class="code" href="structH5PartFile.html">H5PartFile</a> *f,<span class="keywordtype">char</span> *name,<span class="keywordtype">void</span> *data);
|
||||
<a name="l00132"></a>00132
|
||||
<a name="l00133"></a>00133
|
||||
<a name="l00134"></a>00134 <span class="comment">/**************** File Stashing Interfaces *************************/</span>
|
||||
<a name="l00135"></a>00135 <span class="keywordtype">int</span> <a class="code" href="H5Part_8c.html#a42">H5PartStashFile</a>(<a class="code" href="structH5PartFile.html">H5PartFile</a> *f,<span class="keywordtype">char</span> *filename);
|
||||
<a name="l00136"></a>00136 <span class="keywordtype">int</span> <a class="code" href="H5Part_8c.html#a43">H5PartUnstashFile</a>(<a class="code" href="structH5PartFile.html">H5PartFile</a> *f, <span class="keywordtype">char</span> *filename, <span class="keywordtype">char</span> *outputpath); <span class="comment">/* outputpath can be null for cwd */</span>
|
||||
<a name="l00137"></a>00137 <span class="keywordtype">int</span> <a class="code" href="H5Part_8c.html#a44">H5PartGetNumStashFiles</a>(<a class="code" href="structH5PartFile.html">H5PartFile</a> *f);
|
||||
<a name="l00138"></a>00138 <span class="keywordtype">int</span> <a class="code" href="H5Part_8c.html#a45">H5PartFileGetStashFileName</a>(<a class="code" href="structH5PartFile.html">H5PartFile</a> *f,<span class="keywordtype">int</span> nameindex,<span class="keywordtype">char</span> *filename,<span class="keywordtype">int</span> maxnamelen);
|
||||
<a name="l00139"></a>00139
|
||||
<a name="l00140"></a>00140
|
||||
<a name="l00141"></a>00141 <span class="preprocessor">#endif</span>
|
||||
</pre></div><hr size="1"><address style="align: right;"><small>Generated on Tue Jan 31 11:52:45 2006 for H5Part by
|
||||
<a href="http://www.doxygen.org/index.html">
|
||||
<img src="doxygen.png" alt="doxygen" align="middle" border="0"></a> 1.4.4 </small></address>
|
||||
</body>
|
||||
</html>
|
||||
File diff suppressed because it is too large
Load Diff
@@ -0,0 +1,16 @@
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<html><head><meta http-equiv="Content-Type" content="text/html;charset=iso-8859-1">
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<title>H5Part: Class List</title>
|
||||
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|
||||
</head><body>
|
||||
<!-- Generated by Doxygen 1.4.4 -->
|
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<div class="qindex"><a class="qindex" href="index.html">Main Page</a> | <a class="qindexHL" href="annotated.html">Class List</a> | <a class="qindex" href="files.html">File List</a> | <a class="qindex" href="functions.html">Class Members</a> | <a class="qindex" href="globals.html">File Members</a></div>
|
||||
<h1>H5Part Class List</h1>Here are the classes, structs, unions and interfaces with brief descriptions:<table>
|
||||
<tr><td class="indexkey"><a class="el" href="structH5IO__getname__t.html">H5IO_getname_t</a></td><td class="indexvalue"></td></tr>
|
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<tr><td class="indexkey"><a class="el" href="structH5PartFile.html">H5PartFile</a></td><td class="indexvalue"></td></tr>
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<hr size="1"><address style="align: right;"><small>Generated on Tue Jan 31 11:52:45 2006 for H5Part by
|
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<a href="http://www.doxygen.org/index.html">
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<img src="doxygen.png" alt="doxygen" align="middle" border="0"></a> 1.4.4 </small></address>
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border-bottom-color: #E0E0E0;
|
||||
border-left-color: #E0E0E0;
|
||||
border-top-style: solid;
|
||||
border-right-style: none;
|
||||
border-bottom-style: none;
|
||||
border-left-style: none;
|
||||
color: #606060;
|
||||
background-color: #FAFAFA;
|
||||
font-size: 80%;
|
||||
}
|
||||
.search { color: #003399;
|
||||
font-weight: bold;
|
||||
}
|
||||
FORM.search {
|
||||
margin-bottom: 0px;
|
||||
margin-top: 0px;
|
||||
}
|
||||
INPUT.search { font-size: 75%;
|
||||
color: #000080;
|
||||
font-weight: normal;
|
||||
background-color: #eeeeff;
|
||||
}
|
||||
TD.tiny { font-size: 75%;
|
||||
}
|
||||
a {
|
||||
color: #252E78;
|
||||
}
|
||||
a:visited {
|
||||
color: #3D2185;
|
||||
}
|
||||
.dirtab { padding: 4px;
|
||||
border-collapse: collapse;
|
||||
border: 1px solid #b0b0b0;
|
||||
}
|
||||
TH.dirtab { background: #eeeeff;
|
||||
font-weight: bold;
|
||||
}
|
||||
HR { height: 1px;
|
||||
border: none;
|
||||
border-top: 1px solid black;
|
||||
}
|
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Binary file not shown.
|
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@@ -0,0 +1,17 @@
|
||||
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
|
||||
<html><head><meta http-equiv="Content-Type" content="text/html;charset=iso-8859-1">
|
||||
<title>H5Part: File Index</title>
|
||||
<link href="doxygen.css" rel="stylesheet" type="text/css">
|
||||
</head><body>
|
||||
<!-- Generated by Doxygen 1.4.4 -->
|
||||
<div class="qindex"><a class="qindex" href="index.html">Main Page</a> | <a class="qindex" href="annotated.html">Class List</a> | <a class="qindexHL" href="files.html">File List</a> | <a class="qindex" href="functions.html">Class Members</a> | <a class="qindex" href="globals.html">File Members</a></div>
|
||||
<h1>H5Part File List</h1>Here is a list of all files with brief descriptions:<table>
|
||||
<tr><td class="indexkey"><a class="el" href="H5Part_8c.html">H5Part.c</a></td><td class="indexvalue"></td></tr>
|
||||
<tr><td class="indexkey"><a class="el" href="H5Part_8h.html">H5Part.h</a> <a href="H5Part_8h-source.html">[code]</a></td><td class="indexvalue"></td></tr>
|
||||
<tr><td class="indexkey"><a class="el" href="H5PartF_8c.html">H5PartF.c</a></td><td class="indexvalue"></td></tr>
|
||||
</table>
|
||||
<hr size="1"><address style="align: right;"><small>Generated on Tue Jan 31 11:52:45 2006 for H5Part by
|
||||
<a href="http://www.doxygen.org/index.html">
|
||||
<img src="doxygen.png" alt="doxygen" align="middle" border="0"></a> 1.4.4 </small></address>
|
||||
</body>
|
||||
</html>
|
||||
@@ -0,0 +1,35 @@
|
||||
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
|
||||
<html><head><meta http-equiv="Content-Type" content="text/html;charset=iso-8859-1">
|
||||
<title>H5Part: Class Members</title>
|
||||
<link href="doxygen.css" rel="stylesheet" type="text/css">
|
||||
</head><body>
|
||||
<!-- Generated by Doxygen 1.4.4 -->
|
||||
<div class="qindex"><a class="qindex" href="index.html">Main Page</a> | <a class="qindex" href="annotated.html">Class List</a> | <a class="qindex" href="files.html">File List</a> | <a class="qindexHL" href="functions.html">Class Members</a> | <a class="qindex" href="globals.html">File Members</a></div>
|
||||
<div class="qindex"><a class="qindexHL" href="functions.html">All</a> | <a class="qindex" href="functions_vars.html">Variables</a></div>
|
||||
Here is a list of all class members with links to the classes they belong to:
|
||||
<p>
|
||||
<ul>
|
||||
<li>access_prop
|
||||
: <a class="el" href="structH5PartFile.html#o10">H5PartFile</a><li>count
|
||||
: <a class="el" href="structH5IO__getname__t.html#o1">H5IO_getname_t</a><li>create_prop
|
||||
: <a class="el" href="structH5PartFile.html#o9">H5PartFile</a><li>diskshape
|
||||
: <a class="el" href="structH5PartFile.html#o11">H5PartFile</a><li>file
|
||||
: <a class="el" href="structH5PartFile.html#o0">H5PartFile</a><li>index
|
||||
: <a class="el" href="structH5IO__getname__t.html#o0">H5IO_getname_t</a><li>maxstep
|
||||
: <a class="el" href="structH5PartFile.html#o7">H5PartFile</a><li>memshape
|
||||
: <a class="el" href="structH5PartFile.html#o12">H5PartFile</a><li>mode
|
||||
: <a class="el" href="structH5PartFile.html#o6">H5PartFile</a><li>name
|
||||
: <a class="el" href="structH5IO__getname__t.html#o2">H5IO_getname_t</a><li>nparticles
|
||||
: <a class="el" href="structH5PartFile.html#o4">H5PartFile</a><li>properties
|
||||
: <a class="el" href="structH5PartFile.html#o3">H5PartFile</a><li>shape
|
||||
: <a class="el" href="structH5PartFile.html#o5">H5PartFile</a><li>timegroup
|
||||
: <a class="el" href="structH5PartFile.html#o2">H5PartFile</a><li>timestep
|
||||
: <a class="el" href="structH5PartFile.html#o1">H5PartFile</a><li>viewend
|
||||
: <a class="el" href="structH5PartFile.html#o14">H5PartFile</a><li>viewstart
|
||||
: <a class="el" href="structH5PartFile.html#o13">H5PartFile</a><li>xfer_prop
|
||||
: <a class="el" href="structH5PartFile.html#o8">H5PartFile</a></ul>
|
||||
<hr size="1"><address style="align: right;"><small>Generated on Tue Jan 31 11:52:45 2006 for H5Part by
|
||||
<a href="http://www.doxygen.org/index.html">
|
||||
<img src="doxygen.png" alt="doxygen" align="middle" border="0"></a> 1.4.4 </small></address>
|
||||
</body>
|
||||
</html>
|
||||
@@ -0,0 +1,35 @@
|
||||
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
|
||||
<html><head><meta http-equiv="Content-Type" content="text/html;charset=iso-8859-1">
|
||||
<title>H5Part: Class Members - Variables</title>
|
||||
<link href="doxygen.css" rel="stylesheet" type="text/css">
|
||||
</head><body>
|
||||
<!-- Generated by Doxygen 1.4.4 -->
|
||||
<div class="qindex"><a class="qindex" href="index.html">Main Page</a> | <a class="qindex" href="annotated.html">Class List</a> | <a class="qindex" href="files.html">File List</a> | <a class="qindexHL" href="functions.html">Class Members</a> | <a class="qindex" href="globals.html">File Members</a></div>
|
||||
<div class="qindex"><a class="qindex" href="functions.html">All</a> | <a class="qindexHL" href="functions_vars.html">Variables</a></div>
|
||||
|
||||
<p>
|
||||
<ul>
|
||||
<li>access_prop
|
||||
: <a class="el" href="structH5PartFile.html#o10">H5PartFile</a><li>count
|
||||
: <a class="el" href="structH5IO__getname__t.html#o1">H5IO_getname_t</a><li>create_prop
|
||||
: <a class="el" href="structH5PartFile.html#o9">H5PartFile</a><li>diskshape
|
||||
: <a class="el" href="structH5PartFile.html#o11">H5PartFile</a><li>file
|
||||
: <a class="el" href="structH5PartFile.html#o0">H5PartFile</a><li>index
|
||||
: <a class="el" href="structH5IO__getname__t.html#o0">H5IO_getname_t</a><li>maxstep
|
||||
: <a class="el" href="structH5PartFile.html#o7">H5PartFile</a><li>memshape
|
||||
: <a class="el" href="structH5PartFile.html#o12">H5PartFile</a><li>mode
|
||||
: <a class="el" href="structH5PartFile.html#o6">H5PartFile</a><li>name
|
||||
: <a class="el" href="structH5IO__getname__t.html#o2">H5IO_getname_t</a><li>nparticles
|
||||
: <a class="el" href="structH5PartFile.html#o4">H5PartFile</a><li>properties
|
||||
: <a class="el" href="structH5PartFile.html#o3">H5PartFile</a><li>shape
|
||||
: <a class="el" href="structH5PartFile.html#o5">H5PartFile</a><li>timegroup
|
||||
: <a class="el" href="structH5PartFile.html#o2">H5PartFile</a><li>timestep
|
||||
: <a class="el" href="structH5PartFile.html#o1">H5PartFile</a><li>viewend
|
||||
: <a class="el" href="structH5PartFile.html#o14">H5PartFile</a><li>viewstart
|
||||
: <a class="el" href="structH5PartFile.html#o13">H5PartFile</a><li>xfer_prop
|
||||
: <a class="el" href="structH5PartFile.html#o8">H5PartFile</a></ul>
|
||||
<hr size="1"><address style="align: right;"><small>Generated on Tue Jan 31 11:52:45 2006 for H5Part by
|
||||
<a href="http://www.doxygen.org/index.html">
|
||||
<img src="doxygen.png" alt="doxygen" align="middle" border="0"></a> 1.4.4 </small></address>
|
||||
</body>
|
||||
</html>
|
||||
@@ -0,0 +1,107 @@
|
||||
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
|
||||
<html><head><meta http-equiv="Content-Type" content="text/html;charset=iso-8859-1">
|
||||
<title>H5Part: Class Members</title>
|
||||
<link href="doxygen.css" rel="stylesheet" type="text/css">
|
||||
</head><body>
|
||||
<!-- Generated by Doxygen 1.4.4 -->
|
||||
<div class="qindex"><a class="qindex" href="index.html">Main Page</a> | <a class="qindex" href="annotated.html">Class List</a> | <a class="qindex" href="files.html">File List</a> | <a class="qindex" href="functions.html">Class Members</a> | <a class="qindexHL" href="globals.html">File Members</a></div>
|
||||
<div class="qindex"><a class="qindexHL" href="globals.html">All</a> | <a class="qindex" href="globals_func.html">Functions</a> | <a class="qindex" href="globals_type.html">Typedefs</a> | <a class="qindex" href="globals_defs.html">Defines</a></div>
|
||||
<div class="qindex"><a class="qindex" href="#index_f">f</a> | <a class="qindex" href="#index_h">h</a></div>
|
||||
|
||||
<p>
|
||||
Here is a list of all file members with links to the files they belong to:
|
||||
<p>
|
||||
<h3><a class="anchor" name="index_f">- f -</a></h3><ul>
|
||||
<li>f_h5pt_close
|
||||
: <a class="el" href="H5PartF_8c.html#a34">H5PartF.c</a><li>f_h5pt_getdatasetname
|
||||
: <a class="el" href="H5PartF_8c.html#a43">H5PartF.c</a><li>f_h5pt_getfileattribinfo
|
||||
: <a class="el" href="H5PartF_8c.html#a60">H5PartF.c</a><li>f_h5pt_getndatasets
|
||||
: <a class="el" href="H5PartF_8c.html#a41">H5PartF.c</a><li>f_h5pt_getnfileattribs
|
||||
: <a class="el" href="H5PartF_8c.html#a58">H5PartF.c</a><li>f_h5pt_getnpoints
|
||||
: <a class="el" href="H5PartF_8c.html#a42">H5PartF.c</a><li>f_h5pt_getnstepattribs
|
||||
: <a class="el" href="H5PartF_8c.html#a57">H5PartF.c</a><li>f_h5pt_getnsteps
|
||||
: <a class="el" href="H5PartF_8c.html#a40">H5PartF.c</a><li>f_h5pt_getnumpoints()
|
||||
: <a class="el" href="H5PartF_8c.html#a44">H5PartF.c</a><li>f_h5pt_getstepattribinfo
|
||||
: <a class="el" href="H5PartF_8c.html#a59">H5PartF.c</a><li>f_h5pt_getview()
|
||||
: <a class="el" href="H5PartF_8c.html#a48">H5PartF.c</a><li>f_h5pt_hasview
|
||||
: <a class="el" href="H5PartF_8c.html#a47">H5PartF.c</a><li>f_h5pt_isvalid
|
||||
: <a class="el" href="H5PartF_8c.html#a35">H5PartF.c</a><li>f_h5pt_openr
|
||||
: <a class="el" href="H5PartF_8c.html#a32">H5PartF.c</a><li>f_h5pt_openr_par
|
||||
: <a class="el" href="H5PartF_8c.html#a2">H5PartF.c</a><li>f_h5pt_openw
|
||||
: <a class="el" href="H5PartF_8c.html#a33">H5PartF.c</a><li>f_h5pt_openw_par
|
||||
: <a class="el" href="H5PartF_8c.html#a3">H5PartF.c</a><li>f_h5pt_readdata
|
||||
: <a class="el" href="H5PartF_8c.html#a19">H5PartF.c</a><li>f_h5pt_readdata_i8
|
||||
: <a class="el" href="H5PartF_8c.html#a50">H5PartF.c</a><li>f_h5pt_readdata_r8
|
||||
: <a class="el" href="H5PartF_8c.html#a49">H5PartF.c</a><li>f_h5pt_readfileattrib
|
||||
: <a class="el" href="H5PartF_8c.html#a62">H5PartF.c</a><li>f_h5pt_readstepattrib
|
||||
: <a class="el" href="H5PartF_8c.html#a61">H5PartF.c</a><li>f_h5pt_resetview
|
||||
: <a class="el" href="H5PartF_8c.html#a46">H5PartF.c</a><li>f_h5pt_setnpoints
|
||||
: <a class="el" href="H5PartF_8c.html#a36">H5PartF.c</a><li>f_h5pt_setstep
|
||||
: <a class="el" href="H5PartF_8c.html#a37">H5PartF.c</a><li>f_h5pt_setview
|
||||
: <a class="el" href="H5PartF_8c.html#a45">H5PartF.c</a><li>f_h5pt_writedata_i8
|
||||
: <a class="el" href="H5PartF_8c.html#a39">H5PartF.c</a><li>f_h5pt_writedata_r8
|
||||
: <a class="el" href="H5PartF_8c.html#a38">H5PartF.c</a><li>f_h5pt_writefileattrib_i8
|
||||
: <a class="el" href="H5PartF_8c.html#a52">H5PartF.c</a><li>f_h5pt_writefileattrib_r8
|
||||
: <a class="el" href="H5PartF_8c.html#a51">H5PartF.c</a><li>f_h5pt_writefileattrib_string
|
||||
: <a class="el" href="H5PartF_8c.html#a53">H5PartF.c</a><li>f_h5pt_writestepattrib_i8
|
||||
: <a class="el" href="H5PartF_8c.html#a55">H5PartF.c</a><li>f_h5pt_writestepattrib_r8
|
||||
: <a class="el" href="H5PartF_8c.html#a54">H5PartF.c</a><li>f_h5pt_writestepattrib_string
|
||||
: <a class="el" href="H5PartF_8c.html#a56">H5PartF.c</a></ul>
|
||||
<h3><a class="anchor" name="index_h">- h -</a></h3><ul>
|
||||
<li>H5IO_getname_t
|
||||
: <a class="el" href="H5Part_8c.html#a1">H5Part.c</a><li>H5IOgetname()
|
||||
: <a class="el" href="H5Part_8c.html#a26">H5Part.c</a><li>H5NameExists()
|
||||
: <a class="el" href="H5Part_8c.html#a40">H5Part.c</a><li>H5PART_READ
|
||||
: <a class="el" href="H5Part_8h.html#a0">H5Part.h</a><li>H5PART_WRITE
|
||||
: <a class="el" href="H5Part_8h.html#a1">H5Part.h</a><li>H5PartAttribcounter()
|
||||
: <a class="el" href="H5Part_8c.html#a15">H5Part.c</a><li>H5PartCloseFile()
|
||||
: <a class="el" href="H5Part_8h.html#a8">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a6">H5Part.c</a><li>H5PartDScounter()
|
||||
: <a class="el" href="H5Part_8c.html#a25">H5Part.c</a><li>H5PartFile
|
||||
: <a class="el" href="H5Part_8h.html#a5">H5Part.h</a><li>H5PartFileGetStashFileName()
|
||||
: <a class="el" href="H5Part_8h.html#a38">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a45">H5Part.c</a><li>H5PartFileHasName()
|
||||
: <a class="el" href="H5Part_8c.html#a41">H5Part.c</a><li>H5PartFileIsValid()
|
||||
: <a class="el" href="H5Part_8h.html#a7">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a5">H5Part.c</a><li>H5PartGetDatasetName()
|
||||
: <a class="el" href="H5Part_8h.html#a15">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a29">H5Part.c</a><li>H5PartGetDiskShape()
|
||||
: <a class="el" href="H5Part_8c.html#a30">H5Part.c</a><li>H5PartGetFileAttribInfo()
|
||||
: <a class="el" href="H5Part_8h.html#a31">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a20">H5Part.c</a><li>H5PartGetFirstDS()
|
||||
: <a class="el" href="H5Part_8c.html#a32">H5Part.c</a><li>H5PartGetMemShape()
|
||||
: <a class="el" href="H5Part_8c.html#a31">H5Part.c</a><li>H5PartGetNumDatasets()
|
||||
: <a class="el" href="H5Part_8h.html#a14">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a28">H5Part.c</a><li>H5PartGetNumFileAttribs()
|
||||
: <a class="el" href="H5Part_8h.html#a29">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a17">H5Part.c</a><li>H5PartGetNumParticles()
|
||||
: <a class="el" href="H5Part_8h.html#a16">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a33">H5Part.c</a><li>H5PartGetNumStashFiles()
|
||||
: <a class="el" href="H5Part_8h.html#a37">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a44">H5Part.c</a><li>H5PartGetNumStepAttribs()
|
||||
: <a class="el" href="H5Part_8h.html#a28">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a16">H5Part.c</a><li>H5PartGetNumSteps()
|
||||
: <a class="el" href="H5Part_8h.html#a13">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a27">H5Part.c</a><li>H5PartGetStepAttribInfo()
|
||||
: <a class="el" href="H5Part_8h.html#a30">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a19">H5Part.c</a><li>H5PartGetView()
|
||||
: <a class="el" href="H5Part_8h.html#a18">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a35">H5Part.c</a><li>H5PartHasView
|
||||
: <a class="el" href="H5Part_8h.html#a4">H5Part.h</a><li>H5PartIOcounter()
|
||||
: <a class="el" href="H5Part_8c.html#a2">H5Part.c</a><li>H5PartNormType()
|
||||
: <a class="el" href="H5Part_8c.html#a18">H5Part.c</a><li>H5PartOpenFile()
|
||||
: <a class="el" href="H5Part_8h.html#a6">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a4">H5Part.c</a><li>H5PartOpenFileParallel()
|
||||
: <a class="el" href="H5Part_8c.html#a3">H5Part.c</a><li>H5PartOpenFileSerial
|
||||
: <a class="el" href="H5Part_8h.html#a2">H5Part.h</a><li>H5PartReadAttrib()
|
||||
: <a class="el" href="H5Part_8h.html#a33">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a22">H5Part.c</a><li>H5PartReadDataFloat64()
|
||||
: <a class="el" href="H5Part_8h.html#a20">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a37">H5Part.c</a><li>H5PartReadDataInt64()
|
||||
: <a class="el" href="H5Part_8h.html#a21">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a38">H5Part.c</a><li>H5PartReadFileAttrib()
|
||||
: <a class="el" href="H5Part_8h.html#a34">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a23">H5Part.c</a><li>H5PartReadParticleStep()
|
||||
: <a class="el" href="H5Part_8h.html#a22">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a39">H5Part.c</a><li>H5PartReadStepAttrib()
|
||||
: <a class="el" href="H5Part_8h.html#a32">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a21">H5Part.c</a><li>H5PartResetView
|
||||
: <a class="el" href="H5Part_8h.html#a3">H5Part.h</a><li>H5PartSetCanonicalView()
|
||||
: <a class="el" href="H5Part_8h.html#a19">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a36">H5Part.c</a><li>H5PartSetNumParticles()
|
||||
: <a class="el" href="H5Part_8h.html#a9">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a7">H5Part.c</a><li>H5PartSetStep()
|
||||
: <a class="el" href="H5Part_8h.html#a12">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a24">H5Part.c</a><li>H5PartSetView()
|
||||
: <a class="el" href="H5Part_8h.html#a17">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a34">H5Part.c</a><li>H5PartStashFile()
|
||||
: <a class="el" href="H5Part_8h.html#a35">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a42">H5Part.c</a><li>H5PartUnstashFile()
|
||||
: <a class="el" href="H5Part_8h.html#a36">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a43">H5Part.c</a><li>H5PartWriteAttrib()
|
||||
: <a class="el" href="H5Part_8h.html#a25">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a13">H5Part.c</a><li>H5PartWriteDataFloat64()
|
||||
: <a class="el" href="H5Part_8h.html#a10">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a8">H5Part.c</a><li>H5PartWriteDataInt64()
|
||||
: <a class="el" href="H5Part_8h.html#a11">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a9">H5Part.c</a><li>H5PartWriteFileAttrib()
|
||||
: <a class="el" href="H5Part_8h.html#a24">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a14">H5Part.c</a><li>H5PartWriteFileAttribString()
|
||||
: <a class="el" href="H5Part_8h.html#a26">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a10">H5Part.c</a><li>H5PartWriteStepAttrib()
|
||||
: <a class="el" href="H5Part_8h.html#a23">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a12">H5Part.c</a><li>H5PartWriteStepAttribString()
|
||||
: <a class="el" href="H5Part_8h.html#a27">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a11">H5Part.c</a></ul>
|
||||
<hr size="1"><address style="align: right;"><small>Generated on Tue Jan 31 11:52:45 2006 for H5Part by
|
||||
<a href="http://www.doxygen.org/index.html">
|
||||
<img src="doxygen.png" alt="doxygen" align="middle" border="0"></a> 1.4.4 </small></address>
|
||||
</body>
|
||||
</html>
|
||||
@@ -0,0 +1,59 @@
|
||||
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
|
||||
<html><head><meta http-equiv="Content-Type" content="text/html;charset=iso-8859-1">
|
||||
<title>H5Part: Class Members</title>
|
||||
<link href="doxygen.css" rel="stylesheet" type="text/css">
|
||||
</head><body>
|
||||
<!-- Generated by Doxygen 1.4.4 -->
|
||||
<div class="qindex"><a class="qindex" href="index.html">Main Page</a> | <a class="qindex" href="annotated.html">Class List</a> | <a class="qindex" href="files.html">File List</a> | <a class="qindex" href="functions.html">Class Members</a> | <a class="qindexHL" href="globals.html">File Members</a></div>
|
||||
<div class="qindex"><a class="qindex" href="globals.html">All</a> | <a class="qindex" href="globals_func.html">Functions</a> | <a class="qindex" href="globals_type.html">Typedefs</a> | <a class="qindexHL" href="globals_defs.html">Defines</a></div>
|
||||
<div class="qindex"><a class="qindex" href="#index_f">f</a> | <a class="qindex" href="#index_h">h</a></div>
|
||||
|
||||
<p>
|
||||
|
||||
<p>
|
||||
<h3><a class="anchor" name="index_f">- f -</a></h3><ul>
|
||||
<li>f_h5pt_close
|
||||
: <a class="el" href="H5PartF_8c.html#a34">H5PartF.c</a><li>f_h5pt_getdatasetname
|
||||
: <a class="el" href="H5PartF_8c.html#a43">H5PartF.c</a><li>f_h5pt_getfileattribinfo
|
||||
: <a class="el" href="H5PartF_8c.html#a60">H5PartF.c</a><li>f_h5pt_getndatasets
|
||||
: <a class="el" href="H5PartF_8c.html#a41">H5PartF.c</a><li>f_h5pt_getnfileattribs
|
||||
: <a class="el" href="H5PartF_8c.html#a58">H5PartF.c</a><li>f_h5pt_getnpoints
|
||||
: <a class="el" href="H5PartF_8c.html#a42">H5PartF.c</a><li>f_h5pt_getnstepattribs
|
||||
: <a class="el" href="H5PartF_8c.html#a57">H5PartF.c</a><li>f_h5pt_getnsteps
|
||||
: <a class="el" href="H5PartF_8c.html#a40">H5PartF.c</a><li>f_h5pt_getstepattribinfo
|
||||
: <a class="el" href="H5PartF_8c.html#a59">H5PartF.c</a><li>f_h5pt_hasview
|
||||
: <a class="el" href="H5PartF_8c.html#a47">H5PartF.c</a><li>f_h5pt_isvalid
|
||||
: <a class="el" href="H5PartF_8c.html#a35">H5PartF.c</a><li>f_h5pt_openr
|
||||
: <a class="el" href="H5PartF_8c.html#a32">H5PartF.c</a><li>f_h5pt_openr_par
|
||||
: <a class="el" href="H5PartF_8c.html#a2">H5PartF.c</a><li>f_h5pt_openw
|
||||
: <a class="el" href="H5PartF_8c.html#a33">H5PartF.c</a><li>f_h5pt_openw_par
|
||||
: <a class="el" href="H5PartF_8c.html#a3">H5PartF.c</a><li>f_h5pt_readdata
|
||||
: <a class="el" href="H5PartF_8c.html#a19">H5PartF.c</a><li>f_h5pt_readdata_i8
|
||||
: <a class="el" href="H5PartF_8c.html#a50">H5PartF.c</a><li>f_h5pt_readdata_r8
|
||||
: <a class="el" href="H5PartF_8c.html#a49">H5PartF.c</a><li>f_h5pt_readfileattrib
|
||||
: <a class="el" href="H5PartF_8c.html#a62">H5PartF.c</a><li>f_h5pt_readstepattrib
|
||||
: <a class="el" href="H5PartF_8c.html#a61">H5PartF.c</a><li>f_h5pt_resetview
|
||||
: <a class="el" href="H5PartF_8c.html#a46">H5PartF.c</a><li>f_h5pt_setnpoints
|
||||
: <a class="el" href="H5PartF_8c.html#a36">H5PartF.c</a><li>f_h5pt_setstep
|
||||
: <a class="el" href="H5PartF_8c.html#a37">H5PartF.c</a><li>f_h5pt_setview
|
||||
: <a class="el" href="H5PartF_8c.html#a45">H5PartF.c</a><li>f_h5pt_writedata_i8
|
||||
: <a class="el" href="H5PartF_8c.html#a39">H5PartF.c</a><li>f_h5pt_writedata_r8
|
||||
: <a class="el" href="H5PartF_8c.html#a38">H5PartF.c</a><li>f_h5pt_writefileattrib_i8
|
||||
: <a class="el" href="H5PartF_8c.html#a52">H5PartF.c</a><li>f_h5pt_writefileattrib_r8
|
||||
: <a class="el" href="H5PartF_8c.html#a51">H5PartF.c</a><li>f_h5pt_writefileattrib_string
|
||||
: <a class="el" href="H5PartF_8c.html#a53">H5PartF.c</a><li>f_h5pt_writestepattrib_i8
|
||||
: <a class="el" href="H5PartF_8c.html#a55">H5PartF.c</a><li>f_h5pt_writestepattrib_r8
|
||||
: <a class="el" href="H5PartF_8c.html#a54">H5PartF.c</a><li>f_h5pt_writestepattrib_string
|
||||
: <a class="el" href="H5PartF_8c.html#a56">H5PartF.c</a></ul>
|
||||
<h3><a class="anchor" name="index_h">- h -</a></h3><ul>
|
||||
<li>H5PART_READ
|
||||
: <a class="el" href="H5Part_8h.html#a0">H5Part.h</a><li>H5PART_WRITE
|
||||
: <a class="el" href="H5Part_8h.html#a1">H5Part.h</a><li>H5PartHasView
|
||||
: <a class="el" href="H5Part_8h.html#a4">H5Part.h</a><li>H5PartOpenFileSerial
|
||||
: <a class="el" href="H5Part_8h.html#a2">H5Part.h</a><li>H5PartResetView
|
||||
: <a class="el" href="H5Part_8h.html#a3">H5Part.h</a></ul>
|
||||
<hr size="1"><address style="align: right;"><small>Generated on Tue Jan 31 11:52:45 2006 for H5Part by
|
||||
<a href="http://www.doxygen.org/index.html">
|
||||
<img src="doxygen.png" alt="doxygen" align="middle" border="0"></a> 1.4.4 </small></address>
|
||||
</body>
|
||||
</html>
|
||||
@@ -0,0 +1,97 @@
|
||||
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
|
||||
<html><head><meta http-equiv="Content-Type" content="text/html;charset=iso-8859-1">
|
||||
<title>H5Part: Class Members</title>
|
||||
<link href="doxygen.css" rel="stylesheet" type="text/css">
|
||||
</head><body>
|
||||
<!-- Generated by Doxygen 1.4.4 -->
|
||||
<div class="qindex"><a class="qindex" href="index.html">Main Page</a> | <a class="qindex" href="annotated.html">Class List</a> | <a class="qindex" href="files.html">File List</a> | <a class="qindex" href="functions.html">Class Members</a> | <a class="qindexHL" href="globals.html">File Members</a></div>
|
||||
<div class="qindex"><a class="qindex" href="globals.html">All</a> | <a class="qindexHL" href="globals_func.html">Functions</a> | <a class="qindex" href="globals_type.html">Typedefs</a> | <a class="qindex" href="globals_defs.html">Defines</a></div>
|
||||
<div class="qindex"><a class="qindex" href="#index_f">f</a> | <a class="qindex" href="#index_h">h</a></div>
|
||||
|
||||
<p>
|
||||
|
||||
<p>
|
||||
<h3><a class="anchor" name="index_f">- f -</a></h3><ul>
|
||||
<li>f_h5pt_close()
|
||||
: <a class="el" href="H5PartF_8c.html#a34">H5PartF.c</a><li>f_h5pt_getdatasetname()
|
||||
: <a class="el" href="H5PartF_8c.html#a43">H5PartF.c</a><li>f_h5pt_getfileattribinfo()
|
||||
: <a class="el" href="H5PartF_8c.html#a60">H5PartF.c</a><li>f_h5pt_getndatasets()
|
||||
: <a class="el" href="H5PartF_8c.html#a41">H5PartF.c</a><li>f_h5pt_getnfileattribs()
|
||||
: <a class="el" href="H5PartF_8c.html#a58">H5PartF.c</a><li>f_h5pt_getnpoints()
|
||||
: <a class="el" href="H5PartF_8c.html#a42">H5PartF.c</a><li>f_h5pt_getnstepattribs()
|
||||
: <a class="el" href="H5PartF_8c.html#a57">H5PartF.c</a><li>f_h5pt_getnsteps()
|
||||
: <a class="el" href="H5PartF_8c.html#a40">H5PartF.c</a><li>f_h5pt_getnumpoints()
|
||||
: <a class="el" href="H5PartF_8c.html#a44">H5PartF.c</a><li>f_h5pt_getstepattribinfo()
|
||||
: <a class="el" href="H5PartF_8c.html#a59">H5PartF.c</a><li>f_h5pt_getview()
|
||||
: <a class="el" href="H5PartF_8c.html#a48">H5PartF.c</a><li>f_h5pt_hasview()
|
||||
: <a class="el" href="H5PartF_8c.html#a47">H5PartF.c</a><li>f_h5pt_isvalid()
|
||||
: <a class="el" href="H5PartF_8c.html#a35">H5PartF.c</a><li>f_h5pt_openr()
|
||||
: <a class="el" href="H5PartF_8c.html#a32">H5PartF.c</a><li>f_h5pt_openw()
|
||||
: <a class="el" href="H5PartF_8c.html#a33">H5PartF.c</a><li>f_h5pt_readdata_i8()
|
||||
: <a class="el" href="H5PartF_8c.html#a50">H5PartF.c</a><li>f_h5pt_readdata_r8()
|
||||
: <a class="el" href="H5PartF_8c.html#a49">H5PartF.c</a><li>f_h5pt_readfileattrib()
|
||||
: <a class="el" href="H5PartF_8c.html#a62">H5PartF.c</a><li>f_h5pt_readstepattrib()
|
||||
: <a class="el" href="H5PartF_8c.html#a61">H5PartF.c</a><li>f_h5pt_resetview()
|
||||
: <a class="el" href="H5PartF_8c.html#a46">H5PartF.c</a><li>f_h5pt_setnpoints()
|
||||
: <a class="el" href="H5PartF_8c.html#a36">H5PartF.c</a><li>f_h5pt_setstep()
|
||||
: <a class="el" href="H5PartF_8c.html#a37">H5PartF.c</a><li>f_h5pt_setview()
|
||||
: <a class="el" href="H5PartF_8c.html#a45">H5PartF.c</a><li>f_h5pt_writedata_i8()
|
||||
: <a class="el" href="H5PartF_8c.html#a39">H5PartF.c</a><li>f_h5pt_writedata_r8()
|
||||
: <a class="el" href="H5PartF_8c.html#a38">H5PartF.c</a><li>f_h5pt_writefileattrib_i8()
|
||||
: <a class="el" href="H5PartF_8c.html#a52">H5PartF.c</a><li>f_h5pt_writefileattrib_r8()
|
||||
: <a class="el" href="H5PartF_8c.html#a51">H5PartF.c</a><li>f_h5pt_writefileattrib_string()
|
||||
: <a class="el" href="H5PartF_8c.html#a53">H5PartF.c</a><li>f_h5pt_writestepattrib_i8()
|
||||
: <a class="el" href="H5PartF_8c.html#a55">H5PartF.c</a><li>f_h5pt_writestepattrib_r8()
|
||||
: <a class="el" href="H5PartF_8c.html#a54">H5PartF.c</a><li>f_h5pt_writestepattrib_string()
|
||||
: <a class="el" href="H5PartF_8c.html#a56">H5PartF.c</a></ul>
|
||||
<h3><a class="anchor" name="index_h">- h -</a></h3><ul>
|
||||
<li>H5IOgetname()
|
||||
: <a class="el" href="H5Part_8c.html#a26">H5Part.c</a><li>H5NameExists()
|
||||
: <a class="el" href="H5Part_8c.html#a40">H5Part.c</a><li>H5PartAttribcounter()
|
||||
: <a class="el" href="H5Part_8c.html#a15">H5Part.c</a><li>H5PartCloseFile()
|
||||
: <a class="el" href="H5Part_8h.html#a8">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a6">H5Part.c</a><li>H5PartDScounter()
|
||||
: <a class="el" href="H5Part_8c.html#a25">H5Part.c</a><li>H5PartFileGetStashFileName()
|
||||
: <a class="el" href="H5Part_8h.html#a38">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a45">H5Part.c</a><li>H5PartFileHasName()
|
||||
: <a class="el" href="H5Part_8c.html#a41">H5Part.c</a><li>H5PartFileIsValid()
|
||||
: <a class="el" href="H5Part_8h.html#a7">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a5">H5Part.c</a><li>H5PartGetDatasetName()
|
||||
: <a class="el" href="H5Part_8h.html#a15">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a29">H5Part.c</a><li>H5PartGetDiskShape()
|
||||
: <a class="el" href="H5Part_8c.html#a30">H5Part.c</a><li>H5PartGetFileAttribInfo()
|
||||
: <a class="el" href="H5Part_8h.html#a31">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a20">H5Part.c</a><li>H5PartGetFirstDS()
|
||||
: <a class="el" href="H5Part_8c.html#a32">H5Part.c</a><li>H5PartGetMemShape()
|
||||
: <a class="el" href="H5Part_8c.html#a31">H5Part.c</a><li>H5PartGetNumDatasets()
|
||||
: <a class="el" href="H5Part_8h.html#a14">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a28">H5Part.c</a><li>H5PartGetNumFileAttribs()
|
||||
: <a class="el" href="H5Part_8h.html#a29">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a17">H5Part.c</a><li>H5PartGetNumParticles()
|
||||
: <a class="el" href="H5Part_8h.html#a16">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a33">H5Part.c</a><li>H5PartGetNumStashFiles()
|
||||
: <a class="el" href="H5Part_8h.html#a37">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a44">H5Part.c</a><li>H5PartGetNumStepAttribs()
|
||||
: <a class="el" href="H5Part_8h.html#a28">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a16">H5Part.c</a><li>H5PartGetNumSteps()
|
||||
: <a class="el" href="H5Part_8h.html#a13">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a27">H5Part.c</a><li>H5PartGetStepAttribInfo()
|
||||
: <a class="el" href="H5Part_8h.html#a30">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a19">H5Part.c</a><li>H5PartGetView()
|
||||
: <a class="el" href="H5Part_8h.html#a18">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a35">H5Part.c</a><li>H5PartIOcounter()
|
||||
: <a class="el" href="H5Part_8c.html#a2">H5Part.c</a><li>H5PartNormType()
|
||||
: <a class="el" href="H5Part_8c.html#a18">H5Part.c</a><li>H5PartOpenFile()
|
||||
: <a class="el" href="H5Part_8h.html#a6">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a4">H5Part.c</a><li>H5PartOpenFileParallel()
|
||||
: <a class="el" href="H5Part_8c.html#a3">H5Part.c</a><li>H5PartReadAttrib()
|
||||
: <a class="el" href="H5Part_8h.html#a33">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a22">H5Part.c</a><li>H5PartReadDataFloat64()
|
||||
: <a class="el" href="H5Part_8h.html#a20">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a37">H5Part.c</a><li>H5PartReadDataInt64()
|
||||
: <a class="el" href="H5Part_8h.html#a21">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a38">H5Part.c</a><li>H5PartReadFileAttrib()
|
||||
: <a class="el" href="H5Part_8h.html#a34">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a23">H5Part.c</a><li>H5PartReadParticleStep()
|
||||
: <a class="el" href="H5Part_8h.html#a22">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a39">H5Part.c</a><li>H5PartReadStepAttrib()
|
||||
: <a class="el" href="H5Part_8h.html#a32">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a21">H5Part.c</a><li>H5PartSetCanonicalView()
|
||||
: <a class="el" href="H5Part_8h.html#a19">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a36">H5Part.c</a><li>H5PartSetNumParticles()
|
||||
: <a class="el" href="H5Part_8h.html#a9">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a7">H5Part.c</a><li>H5PartSetStep()
|
||||
: <a class="el" href="H5Part_8h.html#a12">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a24">H5Part.c</a><li>H5PartSetView()
|
||||
: <a class="el" href="H5Part_8h.html#a17">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a34">H5Part.c</a><li>H5PartStashFile()
|
||||
: <a class="el" href="H5Part_8h.html#a35">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a42">H5Part.c</a><li>H5PartUnstashFile()
|
||||
: <a class="el" href="H5Part_8h.html#a36">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a43">H5Part.c</a><li>H5PartWriteAttrib()
|
||||
: <a class="el" href="H5Part_8h.html#a25">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a13">H5Part.c</a><li>H5PartWriteDataFloat64()
|
||||
: <a class="el" href="H5Part_8h.html#a10">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a8">H5Part.c</a><li>H5PartWriteDataInt64()
|
||||
: <a class="el" href="H5Part_8h.html#a11">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a9">H5Part.c</a><li>H5PartWriteFileAttrib()
|
||||
: <a class="el" href="H5Part_8h.html#a24">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a14">H5Part.c</a><li>H5PartWriteFileAttribString()
|
||||
: <a class="el" href="H5Part_8h.html#a26">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a10">H5Part.c</a><li>H5PartWriteStepAttrib()
|
||||
: <a class="el" href="H5Part_8h.html#a23">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a12">H5Part.c</a><li>H5PartWriteStepAttribString()
|
||||
: <a class="el" href="H5Part_8h.html#a27">H5Part.h</a>, <a class="el" href="H5Part_8c.html#a11">H5Part.c</a></ul>
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<hr size="1"><address style="align: right;"><small>Generated on Tue Jan 31 11:52:45 2006 for H5Part by
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||||
<a href="http://www.doxygen.org/index.html">
|
||||
<img src="doxygen.png" alt="doxygen" align="middle" border="0"></a> 1.4.4 </small></address>
|
||||
</body>
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||||
</html>
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||||
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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
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||||
<html><head><meta http-equiv="Content-Type" content="text/html;charset=iso-8859-1">
|
||||
<title>H5Part: Class Members</title>
|
||||
<link href="doxygen.css" rel="stylesheet" type="text/css">
|
||||
</head><body>
|
||||
<!-- Generated by Doxygen 1.4.4 -->
|
||||
<div class="qindex"><a class="qindex" href="index.html">Main Page</a> | <a class="qindex" href="annotated.html">Class List</a> | <a class="qindex" href="files.html">File List</a> | <a class="qindex" href="functions.html">Class Members</a> | <a class="qindexHL" href="globals.html">File Members</a></div>
|
||||
<div class="qindex"><a class="qindex" href="globals.html">All</a> | <a class="qindex" href="globals_func.html">Functions</a> | <a class="qindexHL" href="globals_type.html">Typedefs</a> | <a class="qindex" href="globals_defs.html">Defines</a></div>
|
||||
|
||||
<p>
|
||||
<ul>
|
||||
<li>H5IO_getname_t
|
||||
: <a class="el" href="H5Part_8c.html#a1">H5Part.c</a><li>H5PartFile
|
||||
: <a class="el" href="H5Part_8h.html#a5">H5Part.h</a></ul>
|
||||
<hr size="1"><address style="align: right;"><small>Generated on Tue Jan 31 11:52:45 2006 for H5Part by
|
||||
<a href="http://www.doxygen.org/index.html">
|
||||
<img src="doxygen.png" alt="doxygen" align="middle" border="0"></a> 1.4.4 </small></address>
|
||||
</body>
|
||||
</html>
|
||||
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||||
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
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||||
<html><head><meta http-equiv="Content-Type" content="text/html;charset=iso-8859-1">
|
||||
<title>H5Part: Main Page</title>
|
||||
<link href="doxygen.css" rel="stylesheet" type="text/css">
|
||||
</head><body>
|
||||
<!-- Generated by Doxygen 1.4.4 -->
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||||
<div class="qindex"><a class="qindexHL" href="index.html">Main Page</a> | <a class="qindex" href="annotated.html">Class List</a> | <a class="qindex" href="files.html">File List</a> | <a class="qindex" href="functions.html">Class Members</a> | <a class="qindex" href="globals.html">File Members</a></div>
|
||||
<h1>H5Part Documentation</h1>
|
||||
<p>
|
||||
<hr size="1"><address style="align: right;"><small>Generated on Tue Jan 31 11:52:45 2006 for H5Part by
|
||||
<a href="http://www.doxygen.org/index.html">
|
||||
<img src="doxygen.png" alt="doxygen" align="middle" border="0"></a> 1.4.4 </small></address>
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||||
</body>
|
||||
</html>
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||||
@@ -0,0 +1,16 @@
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||||
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
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||||
<html><head><meta http-equiv="Content-Type" content="text/html;charset=iso-8859-1">
|
||||
<title>H5Part: Member List</title>
|
||||
<link href="doxygen.css" rel="stylesheet" type="text/css">
|
||||
</head><body>
|
||||
<!-- Generated by Doxygen 1.4.4 -->
|
||||
<div class="qindex"><a class="qindex" href="index.html">Main Page</a> | <a class="qindex" href="annotated.html">Class List</a> | <a class="qindex" href="files.html">File List</a> | <a class="qindex" href="functions.html">Class Members</a> | <a class="qindex" href="globals.html">File Members</a></div>
|
||||
<h1>H5IO_getname_t Member List</h1>This is the complete list of members for <a class="el" href="structH5IO__getname__t.html">H5IO_getname_t</a>, including all inherited members.<p><table>
|
||||
<tr class="memlist"><td><a class="el" href="structH5IO__getname__t.html#o1">count</a></td><td><a class="el" href="structH5IO__getname__t.html">H5IO_getname_t</a></td><td></td></tr>
|
||||
<tr class="memlist"><td><a class="el" href="structH5IO__getname__t.html#o0">index</a></td><td><a class="el" href="structH5IO__getname__t.html">H5IO_getname_t</a></td><td></td></tr>
|
||||
<tr class="memlist"><td><a class="el" href="structH5IO__getname__t.html#o2">name</a></td><td><a class="el" href="structH5IO__getname__t.html">H5IO_getname_t</a></td><td></td></tr>
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||||
</table><hr size="1"><address style="align: right;"><small>Generated on Tue Jan 31 11:52:45 2006 for H5Part by
|
||||
<a href="http://www.doxygen.org/index.html">
|
||||
<img src="doxygen.png" alt="doxygen" align="middle" border="0"></a> 1.4.4 </small></address>
|
||||
</body>
|
||||
</html>
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||||
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||||
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
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||||
<html><head><meta http-equiv="Content-Type" content="text/html;charset=iso-8859-1">
|
||||
<title>H5Part: H5IO_getname_t Struct Reference</title>
|
||||
<link href="doxygen.css" rel="stylesheet" type="text/css">
|
||||
</head><body>
|
||||
<!-- Generated by Doxygen 1.4.4 -->
|
||||
<div class="qindex"><a class="qindex" href="index.html">Main Page</a> | <a class="qindex" href="annotated.html">Class List</a> | <a class="qindex" href="files.html">File List</a> | <a class="qindex" href="functions.html">Class Members</a> | <a class="qindex" href="globals.html">File Members</a></div>
|
||||
<h1>H5IO_getname_t Struct Reference</h1><!-- doxytag: class="H5IO_getname_t" --><a href="structH5IO__getname__t-members.html">List of all members.</a><table border="0" cellpadding="0" cellspacing="0">
|
||||
<tr><td></td></tr>
|
||||
<tr><td colspan="2"><br><h2>Public Attributes</h2></td></tr>
|
||||
<tr><td class="memItemLeft" nowrap align="right" valign="top">int </td><td class="memItemRight" valign="bottom"><a class="el" href="structH5IO__getname__t.html#o0">index</a></td></tr>
|
||||
|
||||
<tr><td class="memItemLeft" nowrap align="right" valign="top">int </td><td class="memItemRight" valign="bottom"><a class="el" href="structH5IO__getname__t.html#o1">count</a></td></tr>
|
||||
|
||||
<tr><td class="memItemLeft" nowrap align="right" valign="top">char * </td><td class="memItemRight" valign="bottom"><a class="el" href="structH5IO__getname__t.html#o2">name</a></td></tr>
|
||||
|
||||
</table>
|
||||
<hr><a name="_details"></a><h2>Detailed Description</h2>
|
||||
H5IO_getname_t: Private
|
||||
<p>
|
||||
<hr><h2>Member Data Documentation</h2>
|
||||
<a class="anchor" name="o1"></a><!-- doxytag: member="H5IO_getname_t::count" ref="o1" args="" --><p>
|
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<table class="mdTable" cellpadding="2" cellspacing="0">
|
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|
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|
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<table cellpadding="0" cellspacing="0" border="0">
|
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<tr>
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<td class="md" nowrap valign="top">int <a class="el" href="structH5IO__getname__t.html#o1">H5IO_getname_t::count</a> </td>
|
||||
</tr>
|
||||
</table>
|
||||
</td>
|
||||
</tr>
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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||||
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||||
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|
||||
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||||
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|
||||
</td>
|
||||
</tr>
|
||||
</table>
|
||||
<a class="anchor" name="o0"></a><!-- doxytag: member="H5IO_getname_t::index" ref="o0" args="" --><p>
|
||||
<table class="mdTable" cellpadding="2" cellspacing="0">
|
||||
<tr>
|
||||
<td class="mdRow">
|
||||
<table cellpadding="0" cellspacing="0" border="0">
|
||||
<tr>
|
||||
<td class="md" nowrap valign="top">int <a class="el" href="structH5IO__getname__t.html#o0">H5IO_getname_t::index</a> </td>
|
||||
</tr>
|
||||
</table>
|
||||
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|
||||
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|
||||
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||||
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||||
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||||
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||||
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||||
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||||
<td>
|
||||
|
||||
<p>
|
||||
</td>
|
||||
</tr>
|
||||
</table>
|
||||
<a class="anchor" name="o2"></a><!-- doxytag: member="H5IO_getname_t::name" ref="o2" args="" --><p>
|
||||
<table class="mdTable" cellpadding="2" cellspacing="0">
|
||||
<tr>
|
||||
<td class="mdRow">
|
||||
<table cellpadding="0" cellspacing="0" border="0">
|
||||
<tr>
|
||||
<td class="md" nowrap valign="top">char* <a class="el" href="structH5IO__getname__t.html#o2">H5IO_getname_t::name</a> </td>
|
||||
</tr>
|
||||
</table>
|
||||
</td>
|
||||
</tr>
|
||||
</table>
|
||||
<table cellspacing="5" cellpadding="0" border="0">
|
||||
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|
||||
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||||
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||||
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||||
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||||
<p>
|
||||
</td>
|
||||
</tr>
|
||||
</table>
|
||||
<hr>The documentation for this struct was generated from the following file:<ul>
|
||||
<li><a class="el" href="H5Part_8c.html">H5Part.c</a></ul>
|
||||
<hr size="1"><address style="align: right;"><small>Generated on Tue Jan 31 11:52:45 2006 for H5Part by
|
||||
<a href="http://www.doxygen.org/index.html">
|
||||
<img src="doxygen.png" alt="doxygen" align="middle" border="0"></a> 1.4.4 </small></address>
|
||||
</body>
|
||||
</html>
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||||
@@ -0,0 +1,28 @@
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||||
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
|
||||
<html><head><meta http-equiv="Content-Type" content="text/html;charset=iso-8859-1">
|
||||
<title>H5Part: Member List</title>
|
||||
<link href="doxygen.css" rel="stylesheet" type="text/css">
|
||||
</head><body>
|
||||
<!-- Generated by Doxygen 1.4.4 -->
|
||||
<div class="qindex"><a class="qindex" href="index.html">Main Page</a> | <a class="qindex" href="annotated.html">Class List</a> | <a class="qindex" href="files.html">File List</a> | <a class="qindex" href="functions.html">Class Members</a> | <a class="qindex" href="globals.html">File Members</a></div>
|
||||
<h1>H5PartFile Member List</h1>This is the complete list of members for <a class="el" href="structH5PartFile.html">H5PartFile</a>, including all inherited members.<p><table>
|
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<tr class="memlist"><td><a class="el" href="structH5PartFile.html#o10">access_prop</a></td><td><a class="el" href="structH5PartFile.html">H5PartFile</a></td><td></td></tr>
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<tr class="memlist"><td><a class="el" href="structH5PartFile.html#o9">create_prop</a></td><td><a class="el" href="structH5PartFile.html">H5PartFile</a></td><td></td></tr>
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<tr class="memlist"><td><a class="el" href="structH5PartFile.html#o11">diskshape</a></td><td><a class="el" href="structH5PartFile.html">H5PartFile</a></td><td></td></tr>
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<tr class="memlist"><td><a class="el" href="structH5PartFile.html#o0">file</a></td><td><a class="el" href="structH5PartFile.html">H5PartFile</a></td><td></td></tr>
|
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<tr class="memlist"><td><a class="el" href="structH5PartFile.html#o7">maxstep</a></td><td><a class="el" href="structH5PartFile.html">H5PartFile</a></td><td></td></tr>
|
||||
<tr class="memlist"><td><a class="el" href="structH5PartFile.html#o12">memshape</a></td><td><a class="el" href="structH5PartFile.html">H5PartFile</a></td><td></td></tr>
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<tr class="memlist"><td><a class="el" href="structH5PartFile.html#o6">mode</a></td><td><a class="el" href="structH5PartFile.html">H5PartFile</a></td><td></td></tr>
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<tr class="memlist"><td><a class="el" href="structH5PartFile.html#o4">nparticles</a></td><td><a class="el" href="structH5PartFile.html">H5PartFile</a></td><td></td></tr>
|
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<tr class="memlist"><td><a class="el" href="structH5PartFile.html#o3">properties</a></td><td><a class="el" href="structH5PartFile.html">H5PartFile</a></td><td></td></tr>
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<tr class="memlist"><td><a class="el" href="structH5PartFile.html#o5">shape</a></td><td><a class="el" href="structH5PartFile.html">H5PartFile</a></td><td></td></tr>
|
||||
<tr class="memlist"><td><a class="el" href="structH5PartFile.html#o2">timegroup</a></td><td><a class="el" href="structH5PartFile.html">H5PartFile</a></td><td></td></tr>
|
||||
<tr class="memlist"><td><a class="el" href="structH5PartFile.html#o1">timestep</a></td><td><a class="el" href="structH5PartFile.html">H5PartFile</a></td><td></td></tr>
|
||||
<tr class="memlist"><td><a class="el" href="structH5PartFile.html#o14">viewend</a></td><td><a class="el" href="structH5PartFile.html">H5PartFile</a></td><td></td></tr>
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||||
<tr class="memlist"><td><a class="el" href="structH5PartFile.html#o13">viewstart</a></td><td><a class="el" href="structH5PartFile.html">H5PartFile</a></td><td></td></tr>
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<tr class="memlist"><td><a class="el" href="structH5PartFile.html#o8">xfer_prop</a></td><td><a class="el" href="structH5PartFile.html">H5PartFile</a></td><td></td></tr>
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</table><hr size="1"><address style="align: right;"><small>Generated on Tue Jan 31 11:52:45 2006 for H5Part by
|
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<a href="http://www.doxygen.org/index.html">
|
||||
<img src="doxygen.png" alt="doxygen" align="middle" border="0"></a> 1.4.4 </small></address>
|
||||
</body>
|
||||
</html>
|
||||
@@ -0,0 +1,399 @@
|
||||
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
|
||||
<html><head><meta http-equiv="Content-Type" content="text/html;charset=iso-8859-1">
|
||||
<title>H5Part: H5PartFile Struct Reference</title>
|
||||
<link href="doxygen.css" rel="stylesheet" type="text/css">
|
||||
</head><body>
|
||||
<!-- Generated by Doxygen 1.4.4 -->
|
||||
<div class="qindex"><a class="qindex" href="index.html">Main Page</a> | <a class="qindex" href="annotated.html">Class List</a> | <a class="qindex" href="files.html">File List</a> | <a class="qindex" href="functions.html">Class Members</a> | <a class="qindex" href="globals.html">File Members</a></div>
|
||||
<h1>H5PartFile Struct Reference</h1><!-- doxytag: class="H5PartFile" --><code>#include <<a class="el" href="H5Part_8h-source.html">H5Part.h</a>></code>
|
||||
<p>
|
||||
<a href="structH5PartFile-members.html">List of all members.</a><table border="0" cellpadding="0" cellspacing="0">
|
||||
<tr><td></td></tr>
|
||||
<tr><td colspan="2"><br><h2>Public Attributes</h2></td></tr>
|
||||
<tr><td class="memItemLeft" nowrap align="right" valign="top">hid_t </td><td class="memItemRight" valign="bottom"><a class="el" href="structH5PartFile.html#o0">file</a></td></tr>
|
||||
|
||||
<tr><td class="memItemLeft" nowrap align="right" valign="top">int </td><td class="memItemRight" valign="bottom"><a class="el" href="structH5PartFile.html#o1">timestep</a></td></tr>
|
||||
|
||||
<tr><td class="memItemLeft" nowrap align="right" valign="top">hid_t </td><td class="memItemRight" valign="bottom"><a class="el" href="structH5PartFile.html#o2">timegroup</a></td></tr>
|
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|
||||
<tr><td class="memItemLeft" nowrap align="right" valign="top">hid_t </td><td class="memItemRight" valign="bottom"><a class="el" href="structH5PartFile.html#o3">properties</a></td></tr>
|
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|
||||
<tr><td class="memItemLeft" nowrap align="right" valign="top">hsize_t </td><td class="memItemRight" valign="bottom"><a class="el" href="structH5PartFile.html#o4">nparticles</a></td></tr>
|
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|
||||
<tr><td class="memItemLeft" nowrap align="right" valign="top">hid_t </td><td class="memItemRight" valign="bottom"><a class="el" href="structH5PartFile.html#o5">shape</a></td></tr>
|
||||
|
||||
<tr><td class="memItemLeft" nowrap align="right" valign="top">unsigned </td><td class="memItemRight" valign="bottom"><a class="el" href="structH5PartFile.html#o6">mode</a></td></tr>
|
||||
|
||||
<tr><td class="memItemLeft" nowrap align="right" valign="top">int </td><td class="memItemRight" valign="bottom"><a class="el" href="structH5PartFile.html#o7">maxstep</a></td></tr>
|
||||
|
||||
<tr><td class="memItemLeft" nowrap align="right" valign="top">hid_t </td><td class="memItemRight" valign="bottom"><a class="el" href="structH5PartFile.html#o8">xfer_prop</a></td></tr>
|
||||
|
||||
<tr><td class="memItemLeft" nowrap align="right" valign="top">hid_t </td><td class="memItemRight" valign="bottom"><a class="el" href="structH5PartFile.html#o9">create_prop</a></td></tr>
|
||||
|
||||
<tr><td class="memItemLeft" nowrap align="right" valign="top">hid_t </td><td class="memItemRight" valign="bottom"><a class="el" href="structH5PartFile.html#o10">access_prop</a></td></tr>
|
||||
|
||||
<tr><td class="memItemLeft" nowrap align="right" valign="top">hid_t </td><td class="memItemRight" valign="bottom"><a class="el" href="structH5PartFile.html#o11">diskshape</a></td></tr>
|
||||
|
||||
<tr><td class="memItemLeft" nowrap align="right" valign="top">hid_t </td><td class="memItemRight" valign="bottom"><a class="el" href="structH5PartFile.html#o12">memshape</a></td></tr>
|
||||
|
||||
<tr><td class="memItemLeft" nowrap align="right" valign="top">long long </td><td class="memItemRight" valign="bottom"><a class="el" href="structH5PartFile.html#o13">viewstart</a></td></tr>
|
||||
|
||||
<tr><td class="memItemLeft" nowrap align="right" valign="top">long long </td><td class="memItemRight" valign="bottom"><a class="el" href="structH5PartFile.html#o14">viewend</a></td></tr>
|
||||
|
||||
</table>
|
||||
<hr><a name="_details"></a><h2>Detailed Description</h2>
|
||||
/struct H5PartFile: This is an essentially opaque datastructure that acts as the filehandle for all practical purposes. It is created by <a class="el" href="H5Part_8c.html#a4">H5PartOpenFile<xx>()</a> and destroyed by <a class="el" href="H5Part_8c.html#a6">H5PartCloseFile()</a>.
|
||||
<p>
|
||||
<hr><h2>Member Data Documentation</h2>
|
||||
<a class="anchor" name="o10"></a><!-- doxytag: member="H5PartFile::access_prop" ref="o10" args="" --><p>
|
||||
<table class="mdTable" cellpadding="2" cellspacing="0">
|
||||
<tr>
|
||||
<td class="mdRow">
|
||||
<table cellpadding="0" cellspacing="0" border="0">
|
||||
<tr>
|
||||
<td class="md" nowrap valign="top">hid_t <a class="el" href="structH5PartFile.html#o10">H5PartFile::access_prop</a> </td>
|
||||
</tr>
|
||||
</table>
|
||||
</td>
|
||||
</tr>
|
||||
</table>
|
||||
<table cellspacing="5" cellpadding="0" border="0">
|
||||
<tr>
|
||||
<td>
|
||||
|
||||
</td>
|
||||
<td>
|
||||
|
||||
<p>
|
||||
</td>
|
||||
</tr>
|
||||
</table>
|
||||
<a class="anchor" name="o9"></a><!-- doxytag: member="H5PartFile::create_prop" ref="o9" args="" --><p>
|
||||
<table class="mdTable" cellpadding="2" cellspacing="0">
|
||||
<tr>
|
||||
<td class="mdRow">
|
||||
<table cellpadding="0" cellspacing="0" border="0">
|
||||
<tr>
|
||||
<td class="md" nowrap valign="top">hid_t <a class="el" href="structH5PartFile.html#o9">H5PartFile::create_prop</a> </td>
|
||||
</tr>
|
||||
</table>
|
||||
</td>
|
||||
</tr>
|
||||
</table>
|
||||
<table cellspacing="5" cellpadding="0" border="0">
|
||||
<tr>
|
||||
<td>
|
||||
|
||||
</td>
|
||||
<td>
|
||||
|
||||
<p>
|
||||
</td>
|
||||
</tr>
|
||||
</table>
|
||||
<a class="anchor" name="o11"></a><!-- doxytag: member="H5PartFile::diskshape" ref="o11" args="" --><p>
|
||||
<table class="mdTable" cellpadding="2" cellspacing="0">
|
||||
<tr>
|
||||
<td class="mdRow">
|
||||
<table cellpadding="0" cellspacing="0" border="0">
|
||||
<tr>
|
||||
<td class="md" nowrap valign="top">hid_t <a class="el" href="structH5PartFile.html#o11">H5PartFile::diskshape</a> </td>
|
||||
</tr>
|
||||
</table>
|
||||
</td>
|
||||
</tr>
|
||||
</table>
|
||||
<table cellspacing="5" cellpadding="0" border="0">
|
||||
<tr>
|
||||
<td>
|
||||
|
||||
</td>
|
||||
<td>
|
||||
|
||||
<p>
|
||||
</td>
|
||||
</tr>
|
||||
</table>
|
||||
<a class="anchor" name="o0"></a><!-- doxytag: member="H5PartFile::file" ref="o0" args="" --><p>
|
||||
<table class="mdTable" cellpadding="2" cellspacing="0">
|
||||
<tr>
|
||||
<td class="mdRow">
|
||||
<table cellpadding="0" cellspacing="0" border="0">
|
||||
<tr>
|
||||
<td class="md" nowrap valign="top">hid_t <a class="el" href="structH5PartFile.html#o0">H5PartFile::file</a> </td>
|
||||
</tr>
|
||||
</table>
|
||||
</td>
|
||||
</tr>
|
||||
</table>
|
||||
<table cellspacing="5" cellpadding="0" border="0">
|
||||
<tr>
|
||||
<td>
|
||||
|
||||
</td>
|
||||
<td>
|
||||
|
||||
<p>
|
||||
</td>
|
||||
</tr>
|
||||
</table>
|
||||
<a class="anchor" name="o7"></a><!-- doxytag: member="H5PartFile::maxstep" ref="o7" args="" --><p>
|
||||
<table class="mdTable" cellpadding="2" cellspacing="0">
|
||||
<tr>
|
||||
<td class="mdRow">
|
||||
<table cellpadding="0" cellspacing="0" border="0">
|
||||
<tr>
|
||||
<td class="md" nowrap valign="top">int <a class="el" href="structH5PartFile.html#o7">H5PartFile::maxstep</a> </td>
|
||||
</tr>
|
||||
</table>
|
||||
</td>
|
||||
</tr>
|
||||
</table>
|
||||
<table cellspacing="5" cellpadding="0" border="0">
|
||||
<tr>
|
||||
<td>
|
||||
|
||||
</td>
|
||||
<td>
|
||||
|
||||
<p>
|
||||
</td>
|
||||
</tr>
|
||||
</table>
|
||||
<a class="anchor" name="o12"></a><!-- doxytag: member="H5PartFile::memshape" ref="o12" args="" --><p>
|
||||
<table class="mdTable" cellpadding="2" cellspacing="0">
|
||||
<tr>
|
||||
<td class="mdRow">
|
||||
<table cellpadding="0" cellspacing="0" border="0">
|
||||
<tr>
|
||||
<td class="md" nowrap valign="top">hid_t <a class="el" href="structH5PartFile.html#o12">H5PartFile::memshape</a> </td>
|
||||
</tr>
|
||||
</table>
|
||||
</td>
|
||||
</tr>
|
||||
</table>
|
||||
<table cellspacing="5" cellpadding="0" border="0">
|
||||
<tr>
|
||||
<td>
|
||||
|
||||
</td>
|
||||
<td>
|
||||
|
||||
<p>
|
||||
</td>
|
||||
</tr>
|
||||
</table>
|
||||
<a class="anchor" name="o6"></a><!-- doxytag: member="H5PartFile::mode" ref="o6" args="" --><p>
|
||||
<table class="mdTable" cellpadding="2" cellspacing="0">
|
||||
<tr>
|
||||
<td class="mdRow">
|
||||
<table cellpadding="0" cellspacing="0" border="0">
|
||||
<tr>
|
||||
<td class="md" nowrap valign="top">unsigned <a class="el" href="structH5PartFile.html#o6">H5PartFile::mode</a> </td>
|
||||
</tr>
|
||||
</table>
|
||||
</td>
|
||||
</tr>
|
||||
</table>
|
||||
<table cellspacing="5" cellpadding="0" border="0">
|
||||
<tr>
|
||||
<td>
|
||||
|
||||
</td>
|
||||
<td>
|
||||
|
||||
<p>
|
||||
</td>
|
||||
</tr>
|
||||
</table>
|
||||
<a class="anchor" name="o4"></a><!-- doxytag: member="H5PartFile::nparticles" ref="o4" args="" --><p>
|
||||
<table class="mdTable" cellpadding="2" cellspacing="0">
|
||||
<tr>
|
||||
<td class="mdRow">
|
||||
<table cellpadding="0" cellspacing="0" border="0">
|
||||
<tr>
|
||||
<td class="md" nowrap valign="top">hsize_t <a class="el" href="structH5PartFile.html#o4">H5PartFile::nparticles</a> </td>
|
||||
</tr>
|
||||
</table>
|
||||
</td>
|
||||
</tr>
|
||||
</table>
|
||||
<table cellspacing="5" cellpadding="0" border="0">
|
||||
<tr>
|
||||
<td>
|
||||
|
||||
</td>
|
||||
<td>
|
||||
|
||||
<p>
|
||||
</td>
|
||||
</tr>
|
||||
</table>
|
||||
<a class="anchor" name="o3"></a><!-- doxytag: member="H5PartFile::properties" ref="o3" args="" --><p>
|
||||
<table class="mdTable" cellpadding="2" cellspacing="0">
|
||||
<tr>
|
||||
<td class="mdRow">
|
||||
<table cellpadding="0" cellspacing="0" border="0">
|
||||
<tr>
|
||||
<td class="md" nowrap valign="top">hid_t <a class="el" href="structH5PartFile.html#o3">H5PartFile::properties</a> </td>
|
||||
</tr>
|
||||
</table>
|
||||
</td>
|
||||
</tr>
|
||||
</table>
|
||||
<table cellspacing="5" cellpadding="0" border="0">
|
||||
<tr>
|
||||
<td>
|
||||
|
||||
</td>
|
||||
<td>
|
||||
|
||||
<p>
|
||||
</td>
|
||||
</tr>
|
||||
</table>
|
||||
<a class="anchor" name="o5"></a><!-- doxytag: member="H5PartFile::shape" ref="o5" args="" --><p>
|
||||
<table class="mdTable" cellpadding="2" cellspacing="0">
|
||||
<tr>
|
||||
<td class="mdRow">
|
||||
<table cellpadding="0" cellspacing="0" border="0">
|
||||
<tr>
|
||||
<td class="md" nowrap valign="top">hid_t <a class="el" href="structH5PartFile.html#o5">H5PartFile::shape</a> </td>
|
||||
</tr>
|
||||
</table>
|
||||
</td>
|
||||
</tr>
|
||||
</table>
|
||||
<table cellspacing="5" cellpadding="0" border="0">
|
||||
<tr>
|
||||
<td>
|
||||
|
||||
</td>
|
||||
<td>
|
||||
|
||||
<p>
|
||||
</td>
|
||||
</tr>
|
||||
</table>
|
||||
<a class="anchor" name="o2"></a><!-- doxytag: member="H5PartFile::timegroup" ref="o2" args="" --><p>
|
||||
<table class="mdTable" cellpadding="2" cellspacing="0">
|
||||
<tr>
|
||||
<td class="mdRow">
|
||||
<table cellpadding="0" cellspacing="0" border="0">
|
||||
<tr>
|
||||
<td class="md" nowrap valign="top">hid_t <a class="el" href="structH5PartFile.html#o2">H5PartFile::timegroup</a> </td>
|
||||
</tr>
|
||||
</table>
|
||||
</td>
|
||||
</tr>
|
||||
</table>
|
||||
<table cellspacing="5" cellpadding="0" border="0">
|
||||
<tr>
|
||||
<td>
|
||||
|
||||
</td>
|
||||
<td>
|
||||
|
||||
<p>
|
||||
</td>
|
||||
</tr>
|
||||
</table>
|
||||
<a class="anchor" name="o1"></a><!-- doxytag: member="H5PartFile::timestep" ref="o1" args="" --><p>
|
||||
<table class="mdTable" cellpadding="2" cellspacing="0">
|
||||
<tr>
|
||||
<td class="mdRow">
|
||||
<table cellpadding="0" cellspacing="0" border="0">
|
||||
<tr>
|
||||
<td class="md" nowrap valign="top">int <a class="el" href="structH5PartFile.html#o1">H5PartFile::timestep</a> </td>
|
||||
</tr>
|
||||
</table>
|
||||
</td>
|
||||
</tr>
|
||||
</table>
|
||||
<table cellspacing="5" cellpadding="0" border="0">
|
||||
<tr>
|
||||
<td>
|
||||
|
||||
</td>
|
||||
<td>
|
||||
|
||||
<p>
|
||||
</td>
|
||||
</tr>
|
||||
</table>
|
||||
<a class="anchor" name="o14"></a><!-- doxytag: member="H5PartFile::viewend" ref="o14" args="" --><p>
|
||||
<table class="mdTable" cellpadding="2" cellspacing="0">
|
||||
<tr>
|
||||
<td class="mdRow">
|
||||
<table cellpadding="0" cellspacing="0" border="0">
|
||||
<tr>
|
||||
<td class="md" nowrap valign="top">long long <a class="el" href="structH5PartFile.html#o14">H5PartFile::viewend</a> </td>
|
||||
</tr>
|
||||
</table>
|
||||
</td>
|
||||
</tr>
|
||||
</table>
|
||||
<table cellspacing="5" cellpadding="0" border="0">
|
||||
<tr>
|
||||
<td>
|
||||
|
||||
</td>
|
||||
<td>
|
||||
|
||||
<p>
|
||||
</td>
|
||||
</tr>
|
||||
</table>
|
||||
<a class="anchor" name="o13"></a><!-- doxytag: member="H5PartFile::viewstart" ref="o13" args="" --><p>
|
||||
<table class="mdTable" cellpadding="2" cellspacing="0">
|
||||
<tr>
|
||||
<td class="mdRow">
|
||||
<table cellpadding="0" cellspacing="0" border="0">
|
||||
<tr>
|
||||
<td class="md" nowrap valign="top">long long <a class="el" href="structH5PartFile.html#o13">H5PartFile::viewstart</a> </td>
|
||||
</tr>
|
||||
</table>
|
||||
</td>
|
||||
</tr>
|
||||
</table>
|
||||
<table cellspacing="5" cellpadding="0" border="0">
|
||||
<tr>
|
||||
<td>
|
||||
|
||||
</td>
|
||||
<td>
|
||||
|
||||
<p>
|
||||
</td>
|
||||
</tr>
|
||||
</table>
|
||||
<a class="anchor" name="o8"></a><!-- doxytag: member="H5PartFile::xfer_prop" ref="o8" args="" --><p>
|
||||
<table class="mdTable" cellpadding="2" cellspacing="0">
|
||||
<tr>
|
||||
<td class="mdRow">
|
||||
<table cellpadding="0" cellspacing="0" border="0">
|
||||
<tr>
|
||||
<td class="md" nowrap valign="top">hid_t <a class="el" href="structH5PartFile.html#o8">H5PartFile::xfer_prop</a> </td>
|
||||
</tr>
|
||||
</table>
|
||||
</td>
|
||||
</tr>
|
||||
</table>
|
||||
<table cellspacing="5" cellpadding="0" border="0">
|
||||
<tr>
|
||||
<td>
|
||||
|
||||
</td>
|
||||
<td>
|
||||
|
||||
<p>
|
||||
</td>
|
||||
</tr>
|
||||
</table>
|
||||
<hr>The documentation for this struct was generated from the following file:<ul>
|
||||
<li><a class="el" href="H5Part_8h-source.html">H5Part.h</a></ul>
|
||||
<hr size="1"><address style="align: right;"><small>Generated on Tue Jan 31 11:52:45 2006 for H5Part by
|
||||
<a href="http://www.doxygen.org/index.html">
|
||||
<img src="doxygen.png" alt="doxygen" align="middle" border="0"></a> 1.4.4 </small></address>
|
||||
</body>
|
||||
</html>
|
||||
@@ -1,2 +0,0 @@
|
||||
|
||||
|
||||
@@ -1,4 +0,0 @@
|
||||
<style type="text/css">
|
||||
h1 { text-align: center; }
|
||||
</style>
|
||||
|
||||
+606
@@ -0,0 +1,606 @@
|
||||
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
|
||||
<html>
|
||||
<head>
|
||||
<title>H5Part, the C/C++ API</title>
|
||||
<meta http-equiv="Content-Type" content="text/html; charset=us-ascii">
|
||||
<meta name="keywords" content="scientific visualization">
|
||||
<meta name="sitemap" content="put a brief descriptive phrase here that will show up in the site map:foo">
|
||||
|
||||
<!--#include virtual="/include/topIncludes.html"-->
|
||||
|
||||
<div id="maincenter">
|
||||
|
||||
<h1>The C/C++ Application Programming Interface (API)</h1>
|
||||
<UL>
|
||||
<LI><a href="#Opening">Opening, Closing, and Validating Datafiles</a>
|
||||
<LI><a href="#SetStep">Setting the Simulation Timestep</a>
|
||||
<LI><a href="#SetNumParticles">Setting the Number of Particles</a>
|
||||
<LI><a href="#Writing">Writing Datasets</a>
|
||||
<LI><a href="#ReadingNumTimeSteps">Reading the Number of Time Steps</a>
|
||||
<LI><a href="#ReadingNumParticles">Reading the Number of Particles</a>
|
||||
<LI><a href="#Reading">Reading Datasets</a>
|
||||
<LI><a href="#DatasetsInfo">Reading the Number and the Names of Datasets</a>
|
||||
<LI><a href="#AttributesInfo">Attributes Interface</a>
|
||||
<LI><a href="#WriteAttribs">Writing Additional Attributes</a>
|
||||
<LI><a href="#ReadAttribs">Reading Attributes</a>
|
||||
</UL>
|
||||
<br>
|
||||
<a href="ReferencePages/index.html">Reference Manual (Doxygen)</a>
|
||||
<br>
|
||||
<hr>
|
||||
<a name="Opening"><h2>Opening Datafiles</h2></a>
|
||||
<P>
|
||||
Just like the familiar <code>FILE*</code> type for C stdio operations, all
|
||||
H5Part file operations require a file handle. The type of this handle is
|
||||
<code>(H5PartFile*)</code>.
|
||||
<br>
|
||||
<code>H5PartOpenFile()</code> is
|
||||
used to open a serial file and
|
||||
<code>HDFPartOpenFileParallel()</code> is used to open a file for
|
||||
Parallel I/O (in an MPI program).
|
||||
After you open the file handle you can use the same set of
|
||||
subroutines for operations on the file regardless of whether the
|
||||
file is a parallel or serial I/O file.
|
||||
The libraries manage all of this internally.<p>
|
||||
</P>
|
||||
<b>C Prototypes</b><br>
|
||||
<P>
|
||||
<b>Serial File</b><br>
|
||||
<code>H5PartFile *H5PartOpenFile(const char *filename, unsigned
|
||||
accessmode);</code><br>
|
||||
<b>Parallel File</b><br>
|
||||
<code>H5PartFile *H5PartOpenFileParallel(char *filename,int
|
||||
accessmode,MPI_Comm communicator);</code><br>
|
||||
<DT><i>filename</i>: </DT><DD>The name of the IEEEIO data file to
|
||||
open. The typical extension for these files is <i>.h5</i></DD>
|
||||
<DT><i>accessmode</i>: </DT><DD>The accessmode for the file. This is
|
||||
one of 2 different access modes<br>
|
||||
<code>H5PART_READ</code> : Opens a file in read-only mode.</DT><br>
|
||||
<code>H5PART_WRITE</code> : Opens a file in write-only mode.
|
||||
If the
|
||||
file does not exist, it will be created. If it does
|
||||
exist, it will be
|
||||
truncated.
|
||||
<DT><i>communicator</i>: </DT>
|
||||
<DD>This argument is only available if the program has been
|
||||
compiled with the <code>PARALLEL_IO</code> C-preprocessor flag
|
||||
defined. It is used to pass in the communicator that will be
|
||||
used for all collective I/O operations that target the same
|
||||
file on disk.</DD>
|
||||
<DT><i>Returns</i>:</DT><DD>A new filehandle with an open file or NULL if error.</DD>
|
||||
</DL>
|
||||
</P>
|
||||
<br><b>Example Use</b><br>
|
||||
<pre>
|
||||
#include < H5Part.h >
|
||||
. . . code . . .
|
||||
/* Open an HDF5 file for writing */
|
||||
H5PartFile *writer = H5PartOpenFile("datafileout.h5",H5PART_WRITE);
|
||||
/* Open an HDF5 file for Parallel I/O */
|
||||
H5PartFile *writer = H5PartOpenFileParallel("datafileout.h5",H5PART_WRITE,MPI_COMM_WORLD);
|
||||
/* open HDF5 file for reading */
|
||||
H5PartFile *reader = H5PartOpenFile("datafilein.h5",H5PART_READ);
|
||||
/* open HDF5 file for parallel reads */
|
||||
H5PartFile *reader = H5PartOpenFileParallel("datafilein.h5",H5PART_READ,MPI_COMM_WORLD);
|
||||
. . . more code . . .
|
||||
</pre> <br>
|
||||
|
||||
|
||||
<hr>
|
||||
|
||||
|
||||
<h2>Closing Datafiles</h2>
|
||||
<P>
|
||||
To close the file, you simply use H5PartCloseFile() for both
|
||||
parallel and serial files. You must call H5PartCloseFile() on any
|
||||
file descriptor created by H5PartFileOpen() regardless of
|
||||
whether the file turns out to be valid or not.
|
||||
</P>
|
||||
<b>C Prototypes</b><br>
|
||||
<P>
|
||||
<code>void H5PartCloseFile(H5PartFile *fileID);</code>
|
||||
<DL>
|
||||
<DT><i>fileID</i>: </DT><DD>A FileHandle opened by
|
||||
H5PartOpenFile() or H5PartOpenFileParallel().</DD>
|
||||
<DT><i>Returns</i>:</DT><DD>void.</DD>
|
||||
</DL>
|
||||
</P>
|
||||
<br><b>Example Use</b><br>
|
||||
<pre>
|
||||
#include < H5Part.h >
|
||||
H5PartFile *file;
|
||||
... code ...
|
||||
file=H5PartOpenFileParallel("parttest.h5",H5PART_WRITE,comm);
|
||||
... more code ...
|
||||
H5PartCloseFile(file);
|
||||
</pre>
|
||||
<br>
|
||||
<hr>
|
||||
|
||||
|
||||
<h2>Validating Datafiles</h2>
|
||||
<P>
|
||||
You can test if the file was opened successfully using the
|
||||
H5PartFileIsValid() function. It returns 1 if valid, 0 if invalid.<p>
|
||||
</P>
|
||||
<b>C Prototype</b><br>
|
||||
<P>
|
||||
<code>int H5PartFileIsValid(H5PartFile *fileID);</code>
|
||||
<DL>
|
||||
<DT><i>fileID</i>: </DT><DD>A FileHandle opened by
|
||||
H5PartOpenFile() or H5PartOpenFileParallel().</DD>
|
||||
<DT><i>Returns</i>:</DT><DD>1 if valid, 0 if invalid.</DD>
|
||||
</DL>
|
||||
</P>
|
||||
<br><b>Example Use</b><br>
|
||||
<P>
|
||||
Here is an example of validating a newly opened file. Even if
|
||||
the file is invalid, you must use H5PartCloseFile() to reclaim
|
||||
the file handle.
|
||||
</P>
|
||||
<pre>
|
||||
#include < H5Part.h >
|
||||
. . . code . . .
|
||||
H5PartFile *fileID = H5PartOpenFile("datafileout.h5",H5PART_WRITE);
|
||||
if(!H5PartFileIsValid(fileID)){
|
||||
puts("The file you specified does not exist or is not in a
|
||||
readable format");
|
||||
H5PartClose(fileID); /* must reclaim fileID even if file is invalid */
|
||||
. . . do other cleanup . . .
|
||||
}
|
||||
. . . more code . . .
|
||||
</pre><br>
|
||||
|
||||
<hr>
|
||||
|
||||
<a name="SetStep">
|
||||
<h2>Setting the Timestep</h2>
|
||||
</a>
|
||||
<P>
|
||||
When writing data to a file the current time step must be set (even if there is only one). In a file with N time steps, the steps are numbered from 0 to N-1.
|
||||
</P>
|
||||
<b>C Prototype</b><br>
|
||||
<P>
|
||||
<code>void H5PartSetStep((H5PartFile *fileID,int step);</code>
|
||||
<DL>
|
||||
<DT><i>fileID</i>: </DT><DD>A FileHandle opened by
|
||||
H5PartOpenFile() or H5PartOpenFileParallel().</DD>
|
||||
<DT><i>step</i>: </DT><DD>An integer time step.
|
||||
</DD>
|
||||
<DT><i>Returns</i>: </DT><DD>void.</DD>
|
||||
</DL>
|
||||
<br><b>Example Use</b><br>
|
||||
</P>
|
||||
<pre>
|
||||
#include < H5Part.h >
|
||||
H5PartFile *fileID;
|
||||
int timeStep;
|
||||
....
|
||||
H5PartSetStep(fileID,timeStep);
|
||||
....
|
||||
</pre>
|
||||
|
||||
<hr>
|
||||
|
||||
|
||||
<a name="SetNumParticles">
|
||||
</a>
|
||||
<h2>Setting the Number of Particles</h2>
|
||||
<P>
|
||||
H5PartSetNumParticles: This function's sole purpose is to
|
||||
prevent needless creation of new HDF5 DataSpace handles if
|
||||
the number of particles is invariant throughout the sim.
|
||||
That's its only reason for existence. After you call this
|
||||
subroutine, all subsequent operations will assume this
|
||||
number of particles will be written.
|
||||
</P>
|
||||
<b>C Prototype</b><br>
|
||||
<P>
|
||||
<code>void H5PartSetNumParticles(H5PartFile *fileID,long long nparticles);</code>
|
||||
|
||||
<DL>
|
||||
<DT><i>fileID</i>: </DT><DD>A FileHandle opened by
|
||||
H5PartOpenFile() or H5PartOpenFileParallel().</DD>
|
||||
<DT><i>nparticles</i>: </DT><DD>A long long integer specifying the number of particles.
|
||||
</DD>
|
||||
<DT><i>Returns</i>: </DT><DD>void.</DD>
|
||||
</DL>
|
||||
</P>
|
||||
<br><b>Example Use</b><br>
|
||||
<pre>
|
||||
#include < H5Part.h >
|
||||
H5PartFile *fileID;
|
||||
long long nparticles;
|
||||
....
|
||||
H5PartSetStep(fileID,nparticles);
|
||||
....
|
||||
</pre>
|
||||
|
||||
<hr>
|
||||
|
||||
<a name="Writing">
|
||||
<h2>Writing Datasets</h2>
|
||||
</a>
|
||||
<P>
|
||||
After setting the number of particles with
|
||||
<a href="#SetNumParticles">H5PartSetNumParticles()</a>
|
||||
and the current timestep using
|
||||
<a href="#SetStep">H5PartSetStep()</a>, you can start
|
||||
writing datasets into the file. Each dataset has a name
|
||||
associated with it (chosen by the user) in order to facilitate
|
||||
later retrieval. The writing routines also implicitly store
|
||||
the datatype of the array so that the array can be
|
||||
reconstructed properly on other systems with incompatible type
|
||||
representations. The data is committed to disk before the
|
||||
routine returns. All data that is written after setting the
|
||||
timestep is associated with that timestep. While the number of
|
||||
particles can change for each timestep, you cannot change the
|
||||
number of particles in the middle of a given timestep.
|
||||
</P>
|
||||
<b>C Prototypes</b><br>
|
||||
<P>
|
||||
<code>int H5PartWriteDataFloat64(H5PartFile *fileID,char
|
||||
*name,double *array);</code></br>
|
||||
<code>int H5PartWriteDataInt64(H5PartFile *fileID,char
|
||||
*name,double *array);</code>
|
||||
<DL>
|
||||
<DT><i>fileID</i>: </DT><DD>A FileHandle opened by
|
||||
<a href="#Opening">H5PartOpenFile()</a> or
|
||||
<a href="#Opening">H5PartOpenFileParallel()</a>.</DD>
|
||||
<DT><i>name</i>: </DT><DD>A null-terminated string for the
|
||||
name of the array. When retrieving datasets from disk,
|
||||
you ask for them by name. There are no restrictions on
|
||||
naming of arrays, but it is useful to arrive at some common
|
||||
naming convention when sharing data with other groups.</DD>
|
||||
<DT><i>array</i>: </DT><DD>A buffer containing an array of
|
||||
particle data to commit to disk. The datatype for
|
||||
elements in the buffer is implicit in the name of the
|
||||
subroutine call.</DD>
|
||||
<DT><i>Returns</i>: </DT><DD>1 on success, 0 on failure.</DD>
|
||||
</DL>
|
||||
</P>
|
||||
<br><b>Example Use</b><br>
|
||||
<pre>
|
||||
#include < H5Part.h >
|
||||
H5PartFile *fileID;
|
||||
double *x,*y,*z;
|
||||
int timeStep;
|
||||
long long nparticles;
|
||||
|
||||
...
|
||||
|
||||
H5PartSetStep(fileID,timeStep); /* must set the current timestep in file */
|
||||
H5PartSetNumParticles(fileID,nparticles); /* then set number of particles to store */
|
||||
|
||||
/* now write different tuples of data into this timestep of the file */
|
||||
H5PartWriteDataFloat64(fileID,"x",x);
|
||||
H5PartWriteDataFloat64(fileID,"y",y);
|
||||
H5PartWriteDataFloat64(file,"z",z);
|
||||
..
|
||||
</pre>
|
||||
|
||||
<hr>
|
||||
<a name="ReadingNumTimeSteps">
|
||||
<h2>Reading the Number of Time Steps</h2>
|
||||
</a>
|
||||
<P>
|
||||
This reads the number of datasteps that are
|
||||
currently stored in the datafile.
|
||||
It works for both reading and writing of files, but is probably
|
||||
only typically used when you are reading.
|
||||
|
||||
</P>
|
||||
<b>C Prototype</b><br>
|
||||
<P>
|
||||
<code>int H5PartGetNumSteps (H5PartFile *fileID);</code><br>
|
||||
<DL>
|
||||
<DT><i>fileID</i>: </DT><DD>A FileHandle opened by <a href="#Opening">H5PartOpenFile()</a> or
|
||||
<a href="#Opening">H5PartOpenFileParallel()</a>.</DD>
|
||||
<DT><i>Returns</i>: </DT><DD>The number of timesteps currently stored in the file.
|
||||
</DL>
|
||||
</P>
|
||||
<hr>
|
||||
|
||||
<a name="ReadingNumParticles">
|
||||
<h2>Reading the Number of Particles</h2>
|
||||
</a>
|
||||
<P>
|
||||
This reads the number of particles that are
|
||||
currently stored in the current time step.
|
||||
It will arbitrarily select a timestep if you haven't
|
||||
already set the timestep with H5PartSetStep().
|
||||
|
||||
</P>
|
||||
<b>C Prototype</b><br>
|
||||
<P>
|
||||
<code>long long H5PartGetNumParticles (H5PartFile *fileID);</code><br>
|
||||
<DL>
|
||||
<DT><i>fileID</i>: </DT><DD>A FileHandle opened by <a href="#Opening">H5PartOpenFile()</a> or
|
||||
<a href="#Opening">H5PartOpenFileParallel()</a>.</DD>
|
||||
<DT><i>Returns</i>: </DT><DD>The number of particles in current timestep.
|
||||
</DL>
|
||||
</P>
|
||||
<br><b>Example Use</b><br>
|
||||
<pre>
|
||||
#include < H5Part.h >
|
||||
H5PartFile *fileID;
|
||||
int timeStep;
|
||||
long long nparticles;
|
||||
|
||||
H5PartSetStep(fileID,0);
|
||||
nparticles=H5PartGetNumParticles(fileID);
|
||||
...
|
||||
</pre>
|
||||
|
||||
<hr>
|
||||
|
||||
|
||||
|
||||
<a name="Reading">
|
||||
<h2>Reading Datasets</h2>
|
||||
</a>
|
||||
<P>
|
||||
After setting the time step and getting the number of particles to allocate the data arrays, you can start to read the data.
|
||||
</P>
|
||||
<b>C Prototypes</b><br>
|
||||
<P>
|
||||
<code>int H5PartReadDataFloat64(H5PartFile *fileID,char *name,double *array);</code><br>
|
||||
<code>int H5PartReadDataInt64(H5PartFile *fileID,char *name,long long *array);</code><br>
|
||||
|
||||
<DL>
|
||||
<DT><i>fileID</i>: </DT><DD>A FileHandle opened by
|
||||
<a href="#Opening">H5PartOpenFile()</a> or
|
||||
<a href="#Opening">H5PartOpenFileParallel()</a>.</DD>
|
||||
<DT><i>name</i>: </DT><DD>A null-terminated string for the
|
||||
name of the array. When retrieving datasets from disk,
|
||||
you ask for them by name. There are no restrictions on
|
||||
naming of arrays, but it is useful to arrive at some common
|
||||
naming convention when sharing data with other groups.</DD>
|
||||
<DT><i>array</i>: </DT><DD>A buffer to which the particle data will be read.i
|
||||
The datatype for
|
||||
elements in the buffer is implicit in the name of the
|
||||
subroutine call.</DD>
|
||||
<DT><i>Returns</i>: </DT><DD>1 on success, 0 on failure.</DD>
|
||||
</DL>
|
||||
</P>
|
||||
<br><b>Example Use</b><br>
|
||||
<pre>
|
||||
#include < H5Part.h >
|
||||
H5PartFile *fileID;
|
||||
double *x,*y,*z;
|
||||
int timeStep;
|
||||
long long nparticles;
|
||||
|
||||
H5PartSetStep(fileID,0);
|
||||
nparticles=H5PartGetNumParticles(fileID);
|
||||
...
|
||||
|
||||
H5PartReadDataFloat64(file,"x",x);
|
||||
H5PartReadDataFloat64(file,"y",y);
|
||||
H5PartReadDataFloat64(file,"z",z);
|
||||
...
|
||||
</pre>
|
||||
<hr>
|
||||
<a name="DatasetsInfo"><h2>Reading the Number and Names of Datasets</h2></a>
|
||||
<P>
|
||||
H5Part provides funtions to find out how many datasets are stored at a particular timestep
|
||||
and what their names are if you don't know what they are a-priori.
|
||||
</P>
|
||||
<b>C Prototypes</b><br>
|
||||
<P>
|
||||
<code>int H5PartGetNumDatasets(H5PartFile *fileID);</code><br>
|
||||
<DL>
|
||||
<DT><i>fileID</i>: </DT><DD>A FileHandle opened by
|
||||
<a href="#Opening">H5PartOpenFile()</a> or
|
||||
<a href="#Opening">H5PartOpenFileParallel()</a>.</DD>
|
||||
<DT><i>Returns</i>: </DT><DD>The number of datasets.</DD>
|
||||
</DL>
|
||||
</P>
|
||||
<P>
|
||||
<code>int H5PartGetDatasetName(H5PartFile *fileID,int index,char *name,int maxlen);</code><br>
|
||||
<DL>
|
||||
<DT><i>fileID</i>: </DT><DD>A FileHandle opened by
|
||||
<a href="#Opening">H5PartOpenFile()</a> or
|
||||
<a href="#Opening">H5PartOpenFileParallel()</a>.</DD>
|
||||
<DT><i>index</i>:</DT><DD> integer specifying the index of the dataset. If the number of datasets is
|
||||
nds, the range of index is 0 to nds-1.</DD>
|
||||
<DT><i>name</i>:</DT><DD> A null-terminated string for the name of the dataset.</DD>
|
||||
<DT><i>maxlen</i>:</DT><DD> An integer specifying the maximum length of the name array.</DD>
|
||||
<DT><i>Returns</i>: </DT><DD>1 on success, 0 on failure.</DD>
|
||||
</DL>
|
||||
</P>
|
||||
<br><b>Example Use</b><br>
|
||||
<pre>
|
||||
#include < H5Part.h >
|
||||
H5PartFile *fileID;
|
||||
char name[64];
|
||||
int index, nds;
|
||||
|
||||
...
|
||||
nds=H5PartGetNumDatasets(fileID);
|
||||
for(index=0;index< nds;index++){
|
||||
H5PartGetDatasetName(fileID,index,name,64);
|
||||
printf("\tDataset[%u] name=[%s]\n", index,name);
|
||||
}
|
||||
...
|
||||
</pre>
|
||||
|
||||
<hr>
|
||||
|
||||
<a name="AttributesInfo">
|
||||
<h2>Attributes Interface</h2></a>
|
||||
<P>
|
||||
In the current H5Part implemtation there are two types of attributes: file attributes which are bound to the file
|
||||
and step attributes which are bound to the current timestep. You
|
||||
must set the timestep explicitly before writing the attributes (just
|
||||
as you must do when you write a new dataset. Currently there are no
|
||||
attributes that are bound to a particular data array, but this could
|
||||
easily be done if required.
|
||||
</P>
|
||||
<P>H5PartGetNumStepAttribs and H5PartGetNumFileAttribs return the number of attributes bound to a step and to a file respectively. H5PartGetStepAttribInfo and H5PartGetFileAttribInfo return the name, type and number of elements of type "type" bound to a step and a file respectively.
|
||||
</P>
|
||||
<b>C Prototypes:</b><br>
|
||||
<code>int H5PartGetNumStepAttribs(H5PartFile *fileID);
|
||||
</code><br>
|
||||
<DL>
|
||||
<DT><i>fileID</i>: </DT><DD>A FileHandle opened by
|
||||
<a href="#Opening">H5PartOpenFile()</a> or
|
||||
<a href="#Opening">H5PartOpenFileParallel()</a>.</DD>
|
||||
<DT><i>Returns</i> </DT><DD> The number of step attributes for the current step.</DD>
|
||||
</DL>
|
||||
<code>int H5PartGetNumFileAttribs(H5PartFile *fileID);
|
||||
</code><br>
|
||||
<DL>
|
||||
<DT><i>fileID</i>: </DT><DD>A FileHandle opened by
|
||||
<a href="#Opening">H5PartOpenFile()</a> or
|
||||
<a href="#Opening">H5PartOpenFileParallel()</a>.</DD>
|
||||
<DT><i>Returns</i> </DT><DD> The number of file attributes.</DD>
|
||||
</DL>
|
||||
<code>void H5PartGetStepAttribInfo(H5PartFile *fileID,int idx, char *name,size_t maxnamelen,hid_t *type,int *nelem);
|
||||
</code><br>
|
||||
<DL>
|
||||
<DT><i>fileID</i>: </DT><DD>A FileHandle opened by
|
||||
<a href="#Opening">H5PartOpenFile()</a> or
|
||||
<a href="#Opening">H5PartOpenFileParallel()</a>.</DD>
|
||||
<DT><i>idx</i>: </DT><DD>Index of the attribute.</DD>
|
||||
<DT><i>name</i>: </DT><DD>A null-terminated string with the name of the attribute.</DD>
|
||||
<DT><i>maxnamelen</i></DT><DD>the length of the name of the attribute.</DD>
|
||||
<DT><i>type</i>: </DT><DD>One of the following: H5T_NATIVE_DOUBLE H5T_NATIVE_INT64 H5T_NATIVE_CHAR.</DD>
|
||||
<DT><i>nelem</i>: </DT><DD>Number of elements of type "type".</DD>
|
||||
<DT><i>Returns</i> </DT><DD> void.</DD>
|
||||
</DL>
|
||||
|
||||
<code>void H5PartGetFileAttribInfo(H5PartFile *fileID,int idx, char *name,size_t maxnamelen, hid_t *type,int *nelem);
|
||||
</code><br>
|
||||
|
||||
<DL>
|
||||
<DT><i>fileID</i>: </DT><DD>A FileHandle opened by
|
||||
<a href="#Opening">H5PartOpenFile()</a> or
|
||||
<a href="#Opening">H5PartOpenFileParallel()</a>.</DD>
|
||||
<DT><i>idx</i>: </DT><DD>Index of the attribute.</DD>
|
||||
<DT><i>name</i>: </DT><DD>A null-terminated string with the name of the attribute.</DD>
|
||||
<DT><i>maxnamelen</i></DT><DD>the length of the name of the attribute.</DD>
|
||||
<DT><i>type</i>: </DT><DD>One of the following: H5T_NATIVE_DOUBLE H5T_NATIVE_INT64 H5T_NATIVE_CHAR.</DD>
|
||||
<DT><i>nelem</i>: </DT><DD>Number of elements of type "type".</DD>
|
||||
<DT><i>Returns</i> </DT><DD> void.</DD>
|
||||
</DL>
|
||||
|
||||
|
||||
<a name="WriteAttribs">
|
||||
<h2>Writing Attributes</h2>
|
||||
</a>
|
||||
<P>
|
||||
An attribute can be bound to the file or after setting the time step to this time step.
|
||||
</P>
|
||||
|
||||
<b>C Prototypes: Generic Attributes</b><br>
|
||||
<P>
|
||||
<code>int H5PartWriteFileAttrib(H5PartFile *fileID,char *name, hid_t type,void *value,int nelem);</code><br>
|
||||
<code>int H5PartWriteStepAttrib(H5PartFile *fileID,char *name, hid_t type,void *value,int nelem);</code><br>
|
||||
<DL>
|
||||
<DT><i>fileID</i>: </DT><DD>A FileHandle opened by
|
||||
<a href="#Opening">H5PartOpenFile()</a> or
|
||||
<a href="#Opening">H5PartOpenFileParallel()</a>.</DD>
|
||||
<DT><i>name</i>: </DT><DD>A null-terminated string for the
|
||||
name of the array. When retrieving datasets from disk,
|
||||
you ask for them by name. There are no restrictions on
|
||||
naming of arrays, but it is useful to arrive at some common
|
||||
naming convention when sharing data with other groups.</DD>
|
||||
<DT><i>type</i>: One of H5T_NATIVE_DOUBLE, H5T_NATIVE_INT64, H5T_NATIVE_CHAR.</DD>
|
||||
<DT><i>value</i>: value of the attribute.</DD>
|
||||
<DT><i>nelem</i>: number of elements of type "type".</DD>
|
||||
<DT><i>Returns</i>: </DT><DD>1 on success, 0 on failure.</DD>
|
||||
</DL>
|
||||
</P>
|
||||
<br><b>Example Use</b><br>
|
||||
<pre>
|
||||
#include < H5Part.h >
|
||||
H5PartFile *fileID;
|
||||
double actPos;
|
||||
|
||||
...
|
||||
H5PartWriteStepAttrib(file_m,"Spos",H5T_NATIVE_DOUBLE,&actPos,1);
|
||||
...
|
||||
</pre>
|
||||
|
||||
|
||||
<b>C Prototypes: String Attributes</b><br>
|
||||
<P>
|
||||
<code>int H5PartWriteStepAttribString(H5PartFile *fileID,char *name, char *attrib);</code><br>
|
||||
<code>int H5PartWriteFileAttribString(H5PartFile *fileID,char *name, char *attrib);</code><br>
|
||||
<DL>
|
||||
<DT><i>fileID</i>: </DT><DD>A FileHandle opened by
|
||||
<a href="#Opening">H5PartOpenFile()</a> or
|
||||
<a href="#Opening">H5PartOpenFileParallel()</a>.</DD>
|
||||
<DT><i>name</i>: </DT><DD>A null-terminated string for the
|
||||
name of the array. When retrieving datasets from disk,
|
||||
you ask for them by name. There are no restrictions on
|
||||
naming of arrays, but it is useful to arrive at some common
|
||||
naming convention when sharing data with other groups.</DD>
|
||||
<DT><i>attrib</i>: the attribute character string.</DD>
|
||||
<DT><i>Returns</i>: </DT><DD>1 on success, 0 on failure.</DD>
|
||||
</DL>
|
||||
</P>
|
||||
<br><b>Example Use</b><br>
|
||||
<pre>
|
||||
#include < H5Part.h >
|
||||
H5PartFile *fileID;
|
||||
char *newattrib;
|
||||
char *newname;
|
||||
|
||||
...
|
||||
H5PartWriteFileAttribString(fileID, newname,newattrib);
|
||||
...
|
||||
</pre>
|
||||
<hr>
|
||||
|
||||
<a name="ReadAttribs">
|
||||
<h2>Reading Attributes</h2>
|
||||
</a>
|
||||
<P>
|
||||
<P>
|
||||
As with the writing of attributes, there are two basic reading interfaces one that reads file bound attributes and one that reads
|
||||
step bound attributes. If the step is not set the current one will be used.
|
||||
</P>
|
||||
</P>
|
||||
<b>C Prototypes</b><br>
|
||||
<P>
|
||||
<code>void H5PartReadStepAttrib(H5PartFile *fileID,char *name,void *value);</code><br>
|
||||
<code>void H5PartReadAttrib(H5PartFile *fileID,char *name,void *value);</code><br>
|
||||
<code>int H5PartReadFileAttrib(H5PartFile *fileID,char *name,void *value);</code><br>
|
||||
<DL>
|
||||
<DT><i>fileID</i>: </DT><DD>A FileHandle opened by
|
||||
<a href="#Opening">H5PartOpenFile()</a> or
|
||||
<a href="#Opening">H5PartOpenFileParallel()</a>.</DD>
|
||||
<DT><i>name</i>: </DT><DD>A null-terminated string for the
|
||||
name of the array. When retrieving datasets from disk,
|
||||
you ask for them by name. There are no restrictions on
|
||||
naming of arrays, but it is useful to arrive at some common
|
||||
naming convention when sharing data with other groups.</DD>
|
||||
<DT><i>value</i>: value of the attribute.</DD>
|
||||
<DT><i>Returns</i>: </DT><DD>1 on success, 0 on failure.</DD>
|
||||
</DL>
|
||||
</P>
|
||||
<br>
|
||||
NOTE: H5PartReadAttrib has been superseeded by H5PartSetStep.
|
||||
<br>
|
||||
<br><b>Example Use</b><br>
|
||||
<pre>
|
||||
#include < H5Part.h >
|
||||
H5PartFile *fileID;
|
||||
int step;
|
||||
char name[MAXNAME];
|
||||
|
||||
...
|
||||
|
||||
H5PartSetStep(fileID, step);
|
||||
if (H5PartReadStepAttrib(file, "filename", &name[0]) == 1){
|
||||
printf("Read step from file: %s\n", name);
|
||||
}
|
||||
|
||||
...
|
||||
</pre>
|
||||
|
||||
</div>
|
||||
|
||||
<!--#include virtual="/include/dateFooter.html"-->
|
||||
Executable
+504
@@ -0,0 +1,504 @@
|
||||
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
|
||||
<html>
|
||||
<head>
|
||||
<title>H5part, the Fortran API</title>
|
||||
<meta http-equiv="Content-Type" content="text/html; charset=us-ascii">
|
||||
<meta name="keywords" content="scientific visualization">
|
||||
<meta name="sitemap" content="put a brief descriptive phrase here that will show up in the site map:foo">
|
||||
|
||||
<!--#include virtual="/include/topIncludes.html"-->
|
||||
|
||||
<div id="maincenter">
|
||||
|
||||
|
||||
<h1>The FORTRAN Application Programming Interface (API)</h1>
|
||||
<P>
|
||||
These references contain the information on how to access the H5Part API using FORTRAN bindings. All pointers are cast to haddr_t (a unint64_t) within the C/C++ code. In fortran, these pointers (handles) are carried as INTEGER*8
|
||||
</P>
|
||||
<UL>
|
||||
<LI><a href="#Opening">Opening, Closing, and Validating Datafiles</a>
|
||||
<LI><a href="#SetStep">Setting the Simulation Timestep</a>
|
||||
<LI><a href="#SetNumParticles">Setting the Number of Particles</a>
|
||||
<LI><a href="#Writing">Writing Datasets</a>
|
||||
<LI><a href="#ReadingNumTimeSteps">Reading the Number of Time Steps</a>
|
||||
<LI><a href="#ReadingNumTimeSteps">Reading the Number of Particles</a>
|
||||
<LI><a href="#Reading">Reading Datasets</a>
|
||||
<LI><a href="#DatasetsInfo">Reading the Number and the Names of Datasets</a>
|
||||
<LI><a href="#AttributesInfo">Attributes Interface</a>
|
||||
<LI><a href="#WriteAttribs">Writing Additional Attributes</a>
|
||||
<LI><a href="#ReadAttribs">Reading Attributes</a>
|
||||
</UL>
|
||||
<hr>
|
||||
<a name="Opening"><h2>Opening Datafiles</h2></a>
|
||||
<P>
|
||||
Like the familiar OPEN in FORTRAN files can be opened to read and write. Different functions are used for the serial and parallel case.
|
||||
</P>
|
||||
<b>FORTRAN Prototypes</b><br>
|
||||
<P>
|
||||
<b>Serial File</b><br>
|
||||
<code>INTEGER*8 h5pt_openr</code><br>
|
||||
<code>FUNCTION h5pt_openw(file)<br>
|
||||
in CHARACTER file(*) : the filename to open for writing </code><br>
|
||||
returns INTEGER*8 : and open filehandle for serial reads</code><br>
|
||||
<br>
|
||||
<code>INTEGER*8 h5pt_openw</code><br>
|
||||
<code>FUNCTION h5pt_openw(file)<br>
|
||||
in CHARACTER file(*) : the filename to open for writing<br>
|
||||
returns INTEGER*8 : and open filehandle for serial writes</code><br>
|
||||
<br>
|
||||
<b>Parallel File</b><br>
|
||||
<code>INTEGER*8 h5pt_openr_par</code><br>
|
||||
<code>FUNCTION h5pt_openr_par(file,mpi_communicator)<br>
|
||||
in CHARACTER file(*) : the filename to open for writing<br>
|
||||
in INTEGER mpi_communicator : the MPI_Communicator used by the program<br>
|
||||
returns INTEGER*8 : and open filehandle for parallel reads</code><br>
|
||||
<br>
|
||||
<code>INTEGER*8 h5pt_openw_par</code><br>
|
||||
<code>FUNCTION h5pt_openw_par(file,mpi_communicator)<br>
|
||||
in CHARACTER file(*) : the filename to open for writing<br>
|
||||
in INTEGER mpi_communicator : the MPI_Communicator used by the program<br>
|
||||
returns INTEGER*8 : and open filehandle for parallel reads</code><br>
|
||||
</P>
|
||||
<P>
|
||||
<b>Example Use</b><br>
|
||||
<pre>
|
||||
include 'H5Part.inc'
|
||||
INTEGER*8 file
|
||||
...
|
||||
file = h5pt_openw("testfilef.h5")
|
||||
...
|
||||
</pre>
|
||||
</P>
|
||||
<hr>
|
||||
<h2>Closing Datafiles</h2>
|
||||
<P>
|
||||
To close the file, you simply use h5pt_close() for both parallel and serial files. You must call h5pt_close() on any file descriptor created by h5pt_open*() regardless of whether the file turns out to be valid or not.</P>
|
||||
<b>FORTRAN Prototype</b><br>
|
||||
<code>EXTERNAL h5pt_close</code><br>
|
||||
<code>SUBROUTINE h5pt_close(filehandle)<br>
|
||||
in INTEGER*8 filehandle : close this open filehandle</code><br>
|
||||
<b>Example Use</b><br>
|
||||
<pre>
|
||||
include 'H5Part.inc'
|
||||
INTEGER*8 file
|
||||
...
|
||||
call h5pt_close(file)
|
||||
...
|
||||
</pre>
|
||||
</P>
|
||||
<hr>
|
||||
<h2> Validating Datafiles</h2>
|
||||
<P>
|
||||
You can test if the file was opened successfully using the
|
||||
h5p_isvalid() function. It returns 1 if valid, 0 if invalid.
|
||||
</P>
|
||||
<b>FORTRAN Prototype</b><br>
|
||||
<code>INTEGER h5pt_isvalid</code><br>
|
||||
<code>FUNCTION h5pt_isvalid(filehandle)<br>
|
||||
in INTEGER*8 filehandle: an open filehandle <br>
|
||||
returns INTEGER : 1 if the file is valid, 0 if it is not</code><br>
|
||||
<b>Example Use</b><br>
|
||||
<pre>
|
||||
include 'H5Part.inc'
|
||||
INTEGER*8 file
|
||||
INTEGER status
|
||||
...
|
||||
status = h5pt_isvalid(file)
|
||||
...
|
||||
</pre>
|
||||
</P>
|
||||
<hr>
|
||||
<a name="SetStep">
|
||||
<h2>Setting the Timestep</h2>
|
||||
</a>
|
||||
<P>
|
||||
When writing data to a file the current time step must be set (even if there is only one). In a file with N time steps, the steps are numbered from 0 to N-1.
|
||||
</P>
|
||||
<b>FORTRAN Prototype</b><br>
|
||||
<code>EXTERNAL h5pt_setstep</code><br>
|
||||
<code>SUBROUTINE h5pt_setstep(filehandle,step)<br>
|
||||
in INTEGER*8 filehandle : an open filehandle<br>
|
||||
in INTEGER step : Set the current timestep in the file to this
|
||||
</code><br>
|
||||
<b>Example Use</b><br>
|
||||
<pre>
|
||||
include 'H5Part.inc'
|
||||
INTEGER*8 file
|
||||
INTEGER I
|
||||
INTEGER nstep
|
||||
...
|
||||
do I=1,nstep
|
||||
call h5pt_setstep(file,I)
|
||||
... more code ...
|
||||
enddo
|
||||
</pre>
|
||||
</P>
|
||||
<hr>
|
||||
|
||||
<a name="SetNumParticles">
|
||||
</a>
|
||||
<h2>Setting the Number of Particles</h2>
|
||||
<P>
|
||||
This function's sole purpose is to
|
||||
prevent needless creation of new HDF5 DataSpace handles if
|
||||
the number of particles is invariant throughout the sim.
|
||||
That's its only reason for existence. After you call this
|
||||
subroutine, all subsequent operations will assume this
|
||||
number of particles will be written.
|
||||
</P>
|
||||
<b>FORTRAN Prototype</b><br>
|
||||
<code>EXTERNAL h5pt_setnpoints</code><br>
|
||||
<code>SUBROUTINE h5pt_setnpoints(filehandle,npoints)<br>
|
||||
in INTEGER*8 filehandle : an open filehandle<br>
|
||||
in INTEGER*8 npoints : The number of particles on *this* processor</code><br>
|
||||
<b>Example Use</b><br>
|
||||
<pre>
|
||||
include 'H5Part.inc'
|
||||
INTEGER*8 file
|
||||
INTEGER*8 npoints
|
||||
|
||||
...
|
||||
call h5pt_setnpoints(file,npoints)
|
||||
...
|
||||
</pre>
|
||||
|
||||
<hr>
|
||||
<a name="Writing">
|
||||
<h2>Writing Datasets</h2>
|
||||
</a>
|
||||
<P>
|
||||
After setting the number of particles with
|
||||
<a href="#SetNumParticles">h5pt_setnpoints()</a>
|
||||
and the current timestep using
|
||||
<a href="#SetStep">h5pt_setstep()</a>, you can start
|
||||
writing datasets into the file. Each dataset has a name
|
||||
associated with it (chosen by the user) in order to facilitate
|
||||
later retrieval. The writing routines also implicitly store
|
||||
the datatype of the array so that the array can be
|
||||
reconstructed properly on other systems with incompatible type
|
||||
representations. The data is committed to disk before the
|
||||
routine returns. All data that is written after setting the
|
||||
timestep is associated with that timestep. While the number of
|
||||
particles can change for each timestep, you cannot change the
|
||||
number of particles in the middle of a given timestep.
|
||||
</P>
|
||||
<b>FORTRAN Prototypes</b><br>
|
||||
<P>
|
||||
The two data types supported for the moment are REAL*8 and INTEGER*8 (float64 and int64).
|
||||
</P>
|
||||
<code>EXTERNAL h5pt_writedata_r8</code><br>
|
||||
<code>SUBROUTINE h5pt_writedata_r8(filehandle,name,data)<br>
|
||||
in INTEGER*8 filehandle : an open filehandle<br>
|
||||
in CHARACTER name(*) : The name of the data we are writing eg. "X" or "Y" or "PX" etc...<br>
|
||||
in REAL*8 data(*) : The dataarray to write</code><br>
|
||||
<br>
|
||||
<code>EXTERNAL h5pt_writedata_i8</code><br>
|
||||
<code>SUBROUTINE h5pt_writedata_i8(filehandle,name,data)<br>
|
||||
in INTEGER*8 filehandle : an open filehandle<br>
|
||||
in CHARACTER name(*) : The name of the data we are writing eg. "X" or "Y" or "PX" etc...<br>
|
||||
in INTEGER*8 data(*) : The dataarray to write</code><br>
|
||||
<b>Example Use</b><br>
|
||||
<pre>
|
||||
include 'H5Part.inc'
|
||||
INTEGER*8 file
|
||||
INTEGER nstep
|
||||
INTEGER I
|
||||
REAL*8,ALLOCATABLE:: X(:)
|
||||
|
||||
...
|
||||
do I=1,nstep
|
||||
call h5pt_setstep(file,I)
|
||||
call h5pt_writedata_r8(file,"x",X)
|
||||
enddo
|
||||
...
|
||||
</pre>
|
||||
<hr>
|
||||
<a name="ReadingNumTimeSteps">
|
||||
<h2>Reading the Number of Time Steps</h2>
|
||||
</a>
|
||||
<P>
|
||||
This reads the number of datasteps that are
|
||||
currently stored in the datafile.
|
||||
It works for both reading and writing of files, but is probably
|
||||
only typically used when you are reading.
|
||||
|
||||
</P>
|
||||
<b>FORTRAN Prototypes</b><br>
|
||||
<code>INTEGER h5pt_getnsteps</code><br>
|
||||
<code>FUNCTION h5pt_getnsteps(filehandle)<br>
|
||||
in INTEGER*8 filehandle : an open filehandle<br>
|
||||
returns INTEGER : number of timesteps stored in the file</code><br>
|
||||
<b>Example Use</b><br>
|
||||
<pre>
|
||||
include 'H5Part.inc'
|
||||
INTEGER*8 file
|
||||
INTEGER nstep
|
||||
|
||||
file = h5pt_openr("testfilef.h5")
|
||||
nstep = h5pt_getnsteps(file)
|
||||
</pre>
|
||||
<hr>
|
||||
|
||||
<a name="ReadingNumParticles">
|
||||
<h2>Reading the Number of Particles</h2>
|
||||
</a>
|
||||
<P>
|
||||
This reads the number of particles that are currently stored in the current time step. It will arbitrarily select a timestep if you haven't already set the timestep with H5PartSetStep().
|
||||
|
||||
</P>
|
||||
<b>FORTRAN Prototypes</b><br>
|
||||
<code>INTEGER h5pt_getnpointss</code><br>
|
||||
<code>FUNCTION h5pt_getnpoints(filehandle)<br>
|
||||
in INTEGER*8 filehandle : an open filehandle<br>
|
||||
returns INTEGER : number of particles in the current time step</code><br>
|
||||
<b>Example Use</b><br>
|
||||
<pre>
|
||||
include 'H5Part.inc'
|
||||
INTEGER*8 file
|
||||
INTEGER*8 npoints
|
||||
INTEGET step;
|
||||
|
||||
file = h5pt_openr("testfilef.h5")
|
||||
call h5pt_setstep(file,0)
|
||||
npoints = h5pt_getnpoints(file)
|
||||
...
|
||||
</pre>
|
||||
<hr>
|
||||
|
||||
|
||||
|
||||
|
||||
<a name="Reading">
|
||||
<h2>Reading Datasets</h2>
|
||||
</a>
|
||||
<P>
|
||||
After setting the time step and getting the number of particles to allocate the data arrays, you can start to read the data.
|
||||
</P>
|
||||
<b>FORTRAN Prototypes</b><br>
|
||||
<code>INTEGER h5pt_readdata_r8</code><br>
|
||||
<code>FUNCTION h5pt_readdata_r8(filehandle,name,data)<br>
|
||||
in INTEGER*8 filehandle : an open filehandle<br>
|
||||
in CHARACTER name(*) : The name of the data we are writing, eg. "X" or "Y" or "PX" etc...<br>
|
||||
out REAL*8 data(*) : The data array to read. The number of points to read is either the number within
|
||||
the view setby h5pt_setview() or the default (the total number of particles in the file).<br>
|
||||
|
||||
|
||||
|
||||
<b>Example Use</b><br>
|
||||
<pre>
|
||||
include 'H5Part.inc'
|
||||
INTEGER*8 file
|
||||
INTEGER err
|
||||
INTEGER*8,ALLOCATABLE:: ID(:)
|
||||
|
||||
...
|
||||
call h5pt_setstep(file,step)
|
||||
err=h5pt_readdata_i8(file,"id",ID)
|
||||
...
|
||||
</pre>
|
||||
<hr>
|
||||
<a name="DatasetsInfo"><h2>Reading the Number and Names of Datasets</h2></a>
|
||||
<P>
|
||||
H5Part provides funtions to find out how many datasets are stored at a particular timestep
|
||||
and what their names are if you don't know what they are a-priori.
|
||||
</P>
|
||||
<b>FORTRAN Prototypes</b><br>
|
||||
<code>INTEGER h5pt_getndatasets</code><br>
|
||||
<code>FUNCTION h5pt_getndatasets(filehandle)<br>
|
||||
in INTEGER*8 filehandle : an open filehandle<br>
|
||||
returns INTEGER*8 : number of datasets stored per timestep</code><br>
|
||||
<b>Example Use</b><br>
|
||||
<pre>
|
||||
include 'H5Part.inc'
|
||||
INTEGER*8 file
|
||||
INTEGER ndata
|
||||
|
||||
...
|
||||
call h5pt_setstep(file,1)
|
||||
ndata = h5pt_getndatasets(file)
|
||||
...
|
||||
|
||||
</pre>
|
||||
<b>FORTRAN Prototypes</b><br>
|
||||
<code>INTEGER h5pt_getdatasetname</code><br>
|
||||
<code>FUNCTION h5pt_getdatasetname(filehandle,index,name)<br>
|
||||
in INTEGER*8 filehandle : an open filehandle<br>
|
||||
in INTEGER index : Index for a given dataset name<br>
|
||||
out CHARACTER name(*) returns the name of the dataset at that index<br>
|
||||
returns INTEGER, 1 on success 0 on failure.</code><br>
|
||||
<b>Example Use</b><br>
|
||||
<pre>
|
||||
include 'H5Part.inc'
|
||||
INTEGER*8 file
|
||||
INTEGER err
|
||||
CHARACTER,ALLOCATABLE:: name(:)
|
||||
|
||||
...
|
||||
err=h5pt_getdatasetname(file, 1, name)
|
||||
...
|
||||
</pre>
|
||||
<hr>
|
||||
|
||||
<a name="AttributesInfo">
|
||||
<h2>Attributes Interface</h2></a>
|
||||
<P>
|
||||
In the current H5Part implemtation there are two types of attributes: file attributes which are bound to the file
|
||||
and step attributes which are bound to the current timestep. You
|
||||
must set the timestep explicitly before writing the attributes (just
|
||||
as you must do when you write a new dataset. Currently there are no
|
||||
attributes that are bound to a particular data array, but this could
|
||||
easily be done if required.
|
||||
</P>
|
||||
<b>FORTRAN Prototypes</b><br>
|
||||
<code>INTEGER h5pt_getnstepattribs</code><br>
|
||||
<code>FUNCTION h5pt_getnstepattribs(filehandle)<br>
|
||||
in INTEGER*8 filehandle : an open filehandle<br>
|
||||
returns INTEGER : number of attributes bound to this particular step<br>
|
||||
</code>
|
||||
<br>
|
||||
<code>INTEGER h5pt_getnfileattribs</code><br>
|
||||
<code>FUNCTION h5pt_getnfileattribs(filehandle)<br>
|
||||
in INTEGER*8 filehandle : an open filehandle<br>
|
||||
returns INTEGER : number of attributes bound to the file<br>
|
||||
</code>
|
||||
<br>
|
||||
<code>INTEGER h5pt_getstepattribinfo</code><br>
|
||||
<code>FUNCTION h5pt_getstepattribinfo(filehandle,idx,attribname,nelem)<br>
|
||||
in INTEGER*8 filehandle : an open filehandle<br>
|
||||
in INTEGER idx : index of the attribute being queried<br>
|
||||
out CHARACTER name(*) : The name of the attribute<br>
|
||||
out INTEGER nelem : Number of elements in the attrib array<br>
|
||||
returns INTEGER, 1 on success 0 on failure.<br>
|
||||
</code>
|
||||
<br>
|
||||
<code>INTEGER h5pt_getfileattribinfo</code><br>
|
||||
<code>FUNCTION h5pt_getfileattribinfo(filehandle,idx,attribname,nelem)<br>
|
||||
in INTEGER*8 filehandle : an open filehandle<br>
|
||||
in INTEGER idx : index of the attribute being queried<br>
|
||||
out CHARACTER name(*) : The name of the attribute<br>
|
||||
out INTEGER nelem : Number of elements in the attrib array<br>
|
||||
returns INTEGER, 1 on success 0 on failure.
|
||||
</code>
|
||||
<br>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<hr>
|
||||
<a name="WriteAttribs">
|
||||
<h2>Writing Attributes</h2>
|
||||
</a>
|
||||
<P>
|
||||
An attribute can be bound to the file or after setting the time step to this time step.
|
||||
</P>
|
||||
<b>FORTRAN Prototypes</b><br>
|
||||
<code>INTEGER h5pt_writefileattrib_r8</code><br>
|
||||
<code>
|
||||
FUNCTION h5pt_writefileattrib_r8(filehandle,name,attrib,nelem)<br>
|
||||
in INTEGER*8 filehandle : an open filehandle<br>
|
||||
in CHARACTER name(*) : The name of the attribute<br>
|
||||
in REAL*8 attrib(*) : The array of data to write into the attribute<br>
|
||||
in INTEGER nelem : Number of elements in the attrib array<br>
|
||||
returns INTEGER, 1 on success 0 on failure<br>
|
||||
</code>
|
||||
<br>
|
||||
<code>INTEGER h5pt_writefileattrib_i8</code><br>
|
||||
<code>FUNCTION h5pt_writefileattrib_i8(filehandle,name,attrib,nelem)<br>
|
||||
in INTEGER*8 filehandle : The filehandle<br>
|
||||
in CHARACTER name(*) : The name of the attribute<br>
|
||||
in INTEGER*8 attrib(*) : The array of data to write into the attribute<br>
|
||||
in INTEGER nelem : Number of elements in the attrib array<br>
|
||||
returns INTEGER, 1 on success 0 on failure<br>
|
||||
</code>
|
||||
<br>
|
||||
<code>INTEGER h5pt_writefileattrib_string</code><br>
|
||||
<code>FUNCTION h5pt_writefileattrib_string(filehandle,name,string)<br>
|
||||
in INTEGER*8 filehandle : an open filehandle<br>
|
||||
in CHARACTER name(*) : The name of the attribute<br>
|
||||
in CHARACTER*8 attrib(*) : The array of data to write into the attribute<br>
|
||||
returns INTEGER, 1 on success 0 on failure<br>
|
||||
</code>
|
||||
<br>
|
||||
<code>INTEGER h5pt_writestepattrib_r8</code><br>
|
||||
<code>FUNCTION h5pt_writestepattrib_r8(filehandle,name,attrib,nelem)<br>
|
||||
in INTEGER*8 filehandle : an open filehandle<br>
|
||||
in CHARACTER name(*) : The name of the attribute<br>
|
||||
in REAL*8 attrib(*) : The array of data to write into the attribute<br>
|
||||
in INTEGER nelem : Number of elements in the attrib array
|
||||
returns INTEGER, 1 on success 0 on failure<br>
|
||||
</code>
|
||||
<br>
|
||||
<code>INTEGER h5pt_writestepattrib_i8</code><br>
|
||||
<code>FUNCTION h5pt_writestepattrib_i8(filehandle,name,attrib,nelem)<br>
|
||||
in INTEGER*8 filehandle : an open filehandle<br>
|
||||
in CHARACTER name(*) : The name of the attribute<br>
|
||||
in INTEGER*8 attrib(*) : The array of data to write into the attribute<br>
|
||||
in INTEGER nelem : Number of elements in the attrib array<br>
|
||||
returns INTEGER, 1 on success 0 on failure<br>
|
||||
</code>
|
||||
<br>
|
||||
<code>INTEGER h5pt_writestepattrib_string</code><br>
|
||||
<code>FUNCTION h5pt_writestepattrib_string(filehandle,name,string)<br>
|
||||
in INTEGER*8 filehandle : an open filehandle<br>
|
||||
in CHARACTER name(*) : The name of the attribute<br>
|
||||
in CHARACTER*8 attrib(*) : The array of data to write into the attribute<br>
|
||||
returns INTEGER, 1 on success 0 on failure<br>
|
||||
</code>
|
||||
|
||||
<b>Example Use</b><br>
|
||||
<pre>
|
||||
include 'H5Part.inc'
|
||||
INTEGER*8 file
|
||||
REAL*8 REALTIME
|
||||
INTEGER err
|
||||
|
||||
...
|
||||
err=h5pt_writefileattrib_string(file,"Annotation","Testing 1 2 3")
|
||||
err=h5pt_writestepattrib_r8(file,"RealTime",REALTIME,1)
|
||||
...
|
||||
|
||||
</pre>
|
||||
|
||||
<hr>
|
||||
<a name="ReadAttribs">
|
||||
<h2>Reading Attributes</h2>
|
||||
</a>
|
||||
<P>
|
||||
As with the writing of attributes, there are two basic reading interfaces one that reads file bound attributes and one that reads
|
||||
step bound attributes. If the step is not set the current one will be used.
|
||||
</P>
|
||||
<b>FORTRAN Prototypes</b><br>
|
||||
|
||||
<code>INTEGER h5pt_readstepattrib</code><br>
|
||||
<code>FUNCTION h5pt_readstepattrib(filehandle,name,data)<br>
|
||||
in INTEGER*8 filehandle : an open filehandle<br>
|
||||
in CHARACTER attributename(*) : name of the attribute to read<br>
|
||||
out <anytype> data(*) : the attribute data will be read into this array<br>
|
||||
returns INTEGER, 1 on success 0 on failure<br>
|
||||
</code>
|
||||
<br>
|
||||
<code>INTEGER h5pt_readfileattrib</code><br>
|
||||
<code>FUNCTION h5pt_readfileattrib(filehandle,name,data)<br>
|
||||
in INTEGER*8 filehandle an open filehandle<br>
|
||||
in CHARACTER attributename(*) : name of the attribute to read<br>
|
||||
out <anytype> data(*) : the attribute data will be read into this array<br>
|
||||
returns INTEGER, 1 on success 0 on failure<br>
|
||||
</code>
|
||||
|
||||
<b>Example Use</b><br>
|
||||
<pre>
|
||||
include 'H5Part.inc'
|
||||
INTEGER*8 file
|
||||
REAL*8 REALTIME
|
||||
|
||||
...
|
||||
call h5pt_setstep(file,0)
|
||||
err=h5pt_readstepattrib(file,"RealTime",data)
|
||||
...
|
||||
</pre>
|
||||
|
||||
|
||||
</div>
|
||||
|
||||
<!--#include virtual="/include/dateFooter.html"-->
|
||||
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|
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|
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@@ -1,2 +0,0 @@
|
||||
</BODY>
|
||||
</HTML>
|
||||
@@ -1,6 +0,0 @@
|
||||
<HTML>
|
||||
<HEAD>
|
||||
<TITLE>H5/H5Part/H5Block/H5Fed API</TITLE>
|
||||
<LINK HREF="doxygen.css" REL="stylesheet" TYPE="text/css">
|
||||
</HEAD>
|
||||
<BODY BGCOLOR="#FFFFFF">
|
||||
+121
@@ -0,0 +1,121 @@
|
||||
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
|
||||
<html>
|
||||
<head>
|
||||
<title>H5Part: a Portable High Performance Parallel Data Interface to HDF5</title>
|
||||
<meta http-equiv="Content-Type" content="text/html; charset=us-ascii">
|
||||
<meta name="keywords" content="scientific visualization">
|
||||
<meta name="sitemap" content="put a brief descriptive phrase here that will show up in the site map:foo">
|
||||
|
||||
|
||||
<div id="maincenter">
|
||||
<font face="arial,helvetica"><h1>H5Part: a Portable High Performance Parallel Data Interface to HDF5</h1></font>
|
||||
<h2><font color="red"> THESE PAGES ARE UNDER CONSTRUCTION, July 2006</h2></font>
|
||||
<font face="arial,helvetica" color="#555588"><h2>Motivation</h2></font>
|
||||
<P>
|
||||
<TABLE>
|
||||
<TR>
|
||||
<TD>
|
||||
<a href="collision_6.png"><img src="collision_6.s.png" width=300 height=300></a>
|
||||
</TD
|
||||
></TR>
|
||||
<TR>
|
||||
<TD>
|
||||
Beam-beam collision simulation.
|
||||
</TD>
|
||||
</TR>
|
||||
</TABLE>
|
||||
</P>
|
||||
<P>
|
||||
Particle based simulations of accelerator beam-lines, especially in
|
||||
six dimensional phase space, generate vast amounts of data. Even
|
||||
though a subset of statistical information regarding phase space
|
||||
or analysis needs to be preserved, reading and writing such
|
||||
enormous restart files on massively parallel supercomputing
|
||||
systems remains challenging.<p>
|
||||
</P>
|
||||
|
||||
<P>
|
||||
H5Part is a very simple data storage schema and provides an
|
||||
API that simplifies the reading/writing of the data to the HDF5
|
||||
file format. An important foundation for a stable visualization and data
|
||||
analysis environment is a stable and portable file storage format and
|
||||
its associated APIs. The presence of a "common file storage format,"
|
||||
including associated APIs, will help foster a fundamental level of
|
||||
interoperability across the project's software infrastructure. It will
|
||||
also help ensure that key data analysis capabilities are present
|
||||
during the earliest phases of the software development effort.
|
||||
</P>
|
||||
<P>
|
||||
H5Part is built on top of the <a href="http://hdf.ncsa.uiuc.edu/HDF5">HDF5 (Hierarchical Data Format).</a>
|
||||
HDF5 offers a self-describing machine-independent
|
||||
binary file format that supports scalable parallel I/O
|
||||
performance for MPI codes on a variety of supercomputing
|
||||
systems, and works equally well on laptop computers. The API is
|
||||
available for C, C++, and Fortran codes. The H5Part file format and APIs
|
||||
enable disparate research groups with different simulation
|
||||
implementations to transparently share datasets and data
|
||||
analysis tools. For instance, the common file format will enable
|
||||
groups that depend on completely different simulation
|
||||
implementations to share data analysis tools.
|
||||
</P>
|
||||
<font face="arial,helvetica" color="#555588"><h2>H5Part file organization and API</h2></font>
|
||||
<P>
|
||||
The proposed file storage format uses HDF5 for the lowlevel
|
||||
file storage and a simple API to provide a high-level
|
||||
interface to that file format. A programmer can either use
|
||||
the H5Part API to access the data files or write directly to
|
||||
the file format using some simple conventions for organizing
|
||||
and naming the objects stored in the file.
|
||||
</P>
|
||||
<P>
|
||||
In order to store Particle Data in the HDF5 file format,
|
||||
we have formalized the hierarchical arrangement of the
|
||||
datasets and naming conventions for the groups and associated
|
||||
datasets. The sample H5Part API formally encodes
|
||||
these conventions in order to provide a simple and uniform
|
||||
way to access these files from C, C++, and Fortran codes.
|
||||
The API makes it easier to write very portable data adaptors
|
||||
for visualization tools in order to expand the number of
|
||||
tools available to access the data. Even so, anyone can use
|
||||
the HDF5 h5ls utility to examine the organization of the
|
||||
H5Part files and even write their own HDF5-based interface
|
||||
for reading and writing the file format. The standards
|
||||
offered by the sample API are completely independent of
|
||||
the standard for organizing data within the file.The file
|
||||
format supports the storage of multiple timesteps
|
||||
of datasets that contain multiple fields.
|
||||
</P>
|
||||
<!--
|
||||
<font face="arial,helvetica" color="#555588"><h2>Requirements Specification</h2></font>
|
||||
<UL>
|
||||
<LI><a href="H5PartSpecs.html">H5Part API specifications
|
||||
</UL>
|
||||
</a>
|
||||
-->
|
||||
|
||||
<font face="arial,helvetica" color="#555588"><h2>Downloading and Installing H5Part</h2></font>
|
||||
<UL>
|
||||
<LI><a href="Downloading.html">Downloading HDF5 and H5Part
|
||||
<LI><a href="BuildingHDF5.html">Building the HDF5 Library</a>
|
||||
<LI><a href="Building.html">Building the H5Part Library</a>
|
||||
</UL>
|
||||
<font face="arial,helvetica" color="#555588"><h2>Bindings</h2></font>
|
||||
<UL>
|
||||
<LI><a href="UsingC.html">Using the C/C++ interface</a>
|
||||
<LI><a href="UsingF.html">Using the F77/F90 interface</a>
|
||||
<LI><a href="InternalLayout.html">Logical Internal HDF5 File</a>
|
||||
<LI><a href="H5PartTools.html">H5Part Utility Tools</a>
|
||||
<LI><a href="ReferencePages/index.html">Reference Manual</a>
|
||||
</UL>
|
||||
|
||||
<font face="arial,helvetica" color="#555588"><h2>H5Part Visualization Tools</h2></font>
|
||||
<UL>
|
||||
<LI><a href="H5PartExpress.html">H5Part Express Reader</a>
|
||||
<LI><a href="H5PartVisIt.html">H5Part VisIt Reader</a>
|
||||
<LI><a href="H5PartIDL.html">H5Part IDL Reader</a>
|
||||
<LI><a href="http://www.cscs.ch/a-display.php?id=170">H5Part sparticles Reader: developed at CSCS, Switzerland</a>
|
||||
|
||||
<LI><a href="H5PartPartView.html">PartView Visualization Application</a>
|
||||
</UL>
|
||||
</div>
|
||||
|
||||
Binary file not shown.
Some files were not shown because too many files have changed in this diff Show More
Reference in New Issue
Block a user