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|
||||
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|
||||
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|
||||
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|
||||
src/Fortran/H5Block_attribsF.f90 -text
|
||||
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|
||||
src/Fortran/H5Block_ioF.f90 -text
|
||||
src/Fortran/H5Block_readwrite.f90 -text
|
||||
src/Fortran/H5Block_readwrite_F.c -text
|
||||
src/Fortran/H5F.f90 -text
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
src/Fortran/H5Part_ioF.f90 -text
|
||||
src/Fortran/H5_F.c -text
|
||||
src/Fortran/H5_attribs.c -text
|
||||
src/Fortran/H5_attribs.f90 -text
|
||||
src/Fortran/H5_attribsF.f90 -text
|
||||
src/Fortran/H5_attribs_F.c -text
|
||||
src/Fortran/H5_constF.f90 -text
|
||||
src/Fortran/Makefile.am -text
|
||||
src/Fortran/TestUnderscore.f -text
|
||||
src/Fortran/TestUnderscoreC.c -text
|
||||
src/Fortran/generate-h5-attribs-f.py -text
|
||||
src/Fortran/h5_private.h -text
|
||||
/missing -text
|
||||
/rules.make -text
|
||||
src/H5Block.c -text
|
||||
src/H5Block.h -text
|
||||
src/H5BlockErrors.h -text
|
||||
src/H5BlockF.c -text
|
||||
src/H5BlockF90.inc -text
|
||||
src/H5BlockPrivate.h -text
|
||||
src/H5BlockTypes.h -text
|
||||
src/H5Part.c -text
|
||||
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|
||||
src/H5PartErrors.h -text
|
||||
src/H5PartF.c -text
|
||||
src/H5PartF90.inc -text
|
||||
src/H5PartPrivate.h -text
|
||||
src/H5PartTypes.h -text
|
||||
src/Makefile.am -text
|
||||
src/h5core/Makefile.am -text
|
||||
src/h5core/h5_attach.c -text
|
||||
src/h5core/h5_attribs.c -text
|
||||
src/h5core/h5_attribs_private.h -text
|
||||
src/h5core/h5_core_private.h -text
|
||||
src/h5core/h5_errorhandling.c -text
|
||||
src/h5core/h5_errorhandling_private.h -text
|
||||
src/h5core/h5_fcmp.c -text
|
||||
src/h5core/h5_fcmp_private.h -text
|
||||
src/h5core/h5_hdf5.c -text
|
||||
src/h5core/h5_hdf5_private.h -text
|
||||
src/h5core/h5_hsearch.c -text
|
||||
src/h5core/h5_hsearch_private.h -text
|
||||
src/h5core/h5_lustre.c -text
|
||||
src/h5core/h5_lustre_private.h -text
|
||||
src/h5core/h5_maps.c -text
|
||||
src/h5core/h5_maps_private.h -text
|
||||
src/h5core/h5_model.c -text
|
||||
src/h5core/h5_mpi.c -text
|
||||
src/h5core/h5_mpi_private.h -text
|
||||
src/h5core/h5_openclose.c -text
|
||||
src/h5core/h5_qsort.c -text
|
||||
src/h5core/h5_qsort_private.h -text
|
||||
src/h5core/h5_qsort_r.c -text
|
||||
src/h5core/h5_readwrite.c -text
|
||||
src/h5core/h5_readwrite_private.h -text
|
||||
src/h5core/h5_syscall.c -text
|
||||
src/h5core/h5_syscall_private.h -text
|
||||
src/h5core/h5_types_private.h -text
|
||||
src/h5core/h5_va_macros.h -text
|
||||
src/h5core/h5b_attribs.c -text
|
||||
src/h5core/h5b_errorhandling_private.h -text
|
||||
src/h5core/h5b_model.c -text
|
||||
src/h5core/h5b_model_private.h -text
|
||||
src/h5core/h5b_readwrite.c -text
|
||||
src/h5core/h5b_types_private.h -text
|
||||
src/h5core/h5t_access_private.h -text
|
||||
src/h5core/h5t_access_tetm.c -text
|
||||
src/h5core/h5t_access_trim.c -text
|
||||
src/h5core/h5t_adjacencies.c -text
|
||||
src/h5core/h5t_adjacencies_private.h -text
|
||||
src/h5core/h5t_adjacencies_tetm.c -text
|
||||
src/h5core/h5t_adjacencies_trim.c -text
|
||||
src/h5core/h5t_core_private.h -text
|
||||
src/h5core/h5t_errorhandling_private.h -text
|
||||
src/h5core/h5t_hsearch.c -text
|
||||
src/h5core/h5t_hsearch_private.h -text
|
||||
src/h5core/h5t_inquiry.c -text
|
||||
src/h5core/h5t_map.c -text
|
||||
src/h5core/h5t_map_private.h -text
|
||||
src/h5core/h5t_model.c -text
|
||||
src/h5core/h5t_model_private.h -text
|
||||
src/h5core/h5t_model_tetm.c -text
|
||||
src/h5core/h5t_model_trim.c -text
|
||||
src/h5core/h5t_readwrite.c -text
|
||||
src/h5core/h5t_readwrite_private.h -text
|
||||
src/h5core/h5t_readwrite_tetm.c -text
|
||||
src/h5core/h5t_readwrite_trim.c -text
|
||||
src/h5core/h5t_ref_elements.c -text
|
||||
src/h5core/h5t_ref_elements_private.h -text
|
||||
src/h5core/h5t_retrieve.c -text
|
||||
src/h5core/h5t_retrieve_private.h -text
|
||||
src/h5core/h5t_retrieve_tetm.c -text
|
||||
src/h5core/h5t_retrieve_trim.c -text
|
||||
src/h5core/h5t_store.c -text
|
||||
src/h5core/h5t_store_private.h -text
|
||||
src/h5core/h5t_store_tetm.c -text
|
||||
src/h5core/h5t_store_trim.c -text
|
||||
src/h5core/h5t_store_trim_private.h -text
|
||||
src/h5core/h5t_tags.c -text
|
||||
src/h5core/h5t_tags_private.h -text
|
||||
src/h5core/h5t_types_private.h -text
|
||||
src/h5core/h5u_errorhandling_private.h -text
|
||||
src/h5core/h5u_model.c -text
|
||||
src/h5core/h5u_readwrite.c -text
|
||||
src/h5core/h5u_types_private.h -text
|
||||
src/include/H5.h -text
|
||||
src/include/H5Block.h -text
|
||||
src/include/H5Block_readwrite.h -text
|
||||
src/include/H5Fed.h -text
|
||||
src/include/H5Fed_adjacency.h -text
|
||||
src/include/H5Fed_inquiry.h -text
|
||||
src/include/H5Fed_retrieve.h -text
|
||||
src/include/H5Fed_store.h -text
|
||||
src/include/H5Fed_tags.h -text
|
||||
src/include/H5Part.h -text
|
||||
src/include/H5_attachments.h -text
|
||||
src/include/H5_attribs.h -text
|
||||
src/include/H5hut.h -text
|
||||
src/include/Makefile.am -text
|
||||
src/include/grephdr -text
|
||||
src/include/h5core/Makefile.am -text
|
||||
src/include/h5core/h5_attach.h -text
|
||||
src/include/h5core/h5_attribs.h -text
|
||||
src/include/h5core/h5_core.h -text
|
||||
src/include/h5core/h5_errno.h -text
|
||||
src/include/h5core/h5_errorhandling.h -text
|
||||
src/include/h5core/h5_hdf5.h -text
|
||||
src/include/h5core/h5_maps.h -text
|
||||
src/include/h5core/h5_openclose.h -text
|
||||
src/include/h5core/h5_readwrite.h -text
|
||||
src/include/h5core/h5_syscall.h -text
|
||||
src/include/h5core/h5_types.h -text
|
||||
src/include/h5core/h5b_attribs.h -text
|
||||
src/include/h5core/h5b_model.h -text
|
||||
src/include/h5core/h5b_readwrite.h -text
|
||||
src/include/h5core/h5t_adjacencies.h -text
|
||||
src/include/h5core/h5t_core.h -text
|
||||
src/include/h5core/h5t_inquiry.h -text
|
||||
src/include/h5core/h5t_map.h -text
|
||||
src/include/h5core/h5t_model.h -text
|
||||
src/include/h5core/h5t_readwrite.h -text
|
||||
src/include/h5core/h5t_ref_elements.h -text
|
||||
src/include/h5core/h5t_retrieve.h -text
|
||||
src/include/h5core/h5t_storemesh.h -text
|
||||
src/include/h5core/h5t_tags.h -text
|
||||
src/include/h5core/h5u_model.h -text
|
||||
src/include/h5core/h5u_readwrite.h -text
|
||||
src/TestUnderscore.f -text
|
||||
src/TestUnderscoreC.c -text
|
||||
test/Bench.c -text
|
||||
test/BlockTestSpecs.txt -text
|
||||
test/H5BlockDissolveGhosts.c -text
|
||||
test/H5BlockParTestScalarField.c -text
|
||||
test/H5BlockParTestScalarField.pbs -text
|
||||
test/H5BlockParTestScalarFieldF.f90 -text
|
||||
test/H5BlockTestAttributes.c -text
|
||||
test/H5BlockTestAttributesF.f90 -text
|
||||
test/H5ParallelTest.cc -text
|
||||
test/H5PartAndreasTest.cc -text
|
||||
test/H5PartTest.cc -text
|
||||
test/H5PartTestParallel.cc -text
|
||||
test/H5test.cc -text
|
||||
test/H5testF.f -text
|
||||
test/H5testFpar.f90 -text
|
||||
test/Makefile.am -text
|
||||
test/h5_attach_test.c -text
|
||||
test/h5b_read.c -text
|
||||
test/h5b_test.c -text
|
||||
test/h5b_write.c -text
|
||||
test/h5u_read.c -text
|
||||
test/h5u_test.c -text
|
||||
test/h5u_write.c -text
|
||||
test/params.h -text
|
||||
test/testframe.c -text
|
||||
test/testframe.h -text
|
||||
tools/H5PartMerge/AUTHORS -text
|
||||
tools/H5PartMerge/COPYING -text
|
||||
tools/H5PartMerge/ChangeLog -text
|
||||
tools/H5PartMerge/INSTALL -text
|
||||
tools/H5PartMerge/NEWS -text
|
||||
tools/H5PartMerge/README -text
|
||||
tools/H5PartMerge/autogen.sh -text
|
||||
tools/H5PartMerge/configure.ac -text
|
||||
tools/H5PartMerge/makefile.am -text
|
||||
tools/H5PartMerge/src/H5merge.cpp -text
|
||||
tools/H5PartMerge/src/optparse.cpp -text
|
||||
tools/H5PartMerge/src/optparse.hh -text
|
||||
tools/Makefile.am -text
|
||||
tools/README -text
|
||||
tools/h5PartDcToVtk.cc -text
|
||||
tools/h5PartSurfaceToVtk.cc -text
|
||||
tools/h5hutcc.in -text
|
||||
tools/h5ToVtk.cc -text
|
||||
tools/h5pAttrib.cc -text
|
||||
tools/h5pToGNUplot.cc -text
|
||||
tools/homdynToH5p.cc -text
|
||||
tools/vtk2h5grid/Makefile.am -text
|
||||
tools/vtk2h5grid/vtk2h5grid.cc -text
|
||||
visit_plugins/databases/H5Part/.depend -text
|
||||
visit_plugins/databases/H5Part/Makefile -text
|
||||
visit_plugins/databases/H5Part/README.txt -text
|
||||
|
||||
-93
@@ -1,93 +0,0 @@
|
||||
/H5hut
|
||||
/INSTALL
|
||||
/Makefile
|
||||
/Makefile.in
|
||||
/aclocal.m4
|
||||
/autom4te.cache
|
||||
/build
|
||||
/config.guess
|
||||
/config.h
|
||||
/config.h.in
|
||||
/config.log
|
||||
/config.status
|
||||
/config.sub
|
||||
/configure
|
||||
/depcomp
|
||||
doc/Makefile
|
||||
doc/Makefile.in
|
||||
examples/H5Block/H5BlockParTestScalarField
|
||||
examples/H5Block/H5BlockTestAttributes
|
||||
examples/H5Block/Makefile
|
||||
examples/H5Block/Makefile.in
|
||||
examples/H5Fed/.deps
|
||||
examples/H5Fed/Makefile
|
||||
examples/H5Fed/Makefile.in
|
||||
examples/H5Fed/large_tet.h5
|
||||
examples/H5Fed/simple_tet.h5
|
||||
examples/H5Fed/simple_triangle.h5
|
||||
examples/H5Fed/small_tet.h5
|
||||
examples/H5Fed/tetmesh_adjacencies
|
||||
examples/H5Fed/tetmesh_read
|
||||
examples/H5Fed/tetmesh_read_tags
|
||||
examples/H5Fed/tetmesh_write
|
||||
examples/H5Fed/tetmesh_write2
|
||||
examples/H5Fed/tetmesh_write_tags
|
||||
examples/H5Fed/trimesh_adjacencies
|
||||
examples/H5Fed/trimesh_read
|
||||
examples/H5Fed/trimesh_write
|
||||
examples/H5Fed/trimesh_write_dunetest
|
||||
examples/H5Part/Bench
|
||||
examples/H5Part/H5PartAndreasTest
|
||||
examples/H5Part/H5PartTestP
|
||||
examples/H5Part/H5test
|
||||
examples/H5Part/Makefile
|
||||
examples/H5Part/Makefile.in
|
||||
/install-sh
|
||||
/libtool
|
||||
/ltmain.sh
|
||||
/m4
|
||||
/missing
|
||||
src/.deps
|
||||
src/C/.deps
|
||||
src/C/Makefile
|
||||
src/C/Makefile.in
|
||||
src/C/libH5hutC.a
|
||||
src/Fortran/.deps
|
||||
src/Fortran/Makefile
|
||||
src/Fortran/Makefile.in
|
||||
src/Fortran/TestUnderscore
|
||||
src/Fortran/Underscore.h
|
||||
src/Makefile
|
||||
src/Makefile.in
|
||||
src/h5core/.deps
|
||||
src/h5core/Makefile
|
||||
src/h5core/Makefile.in
|
||||
src/h5core/libH5hut.a
|
||||
src/include/H5hutF.h
|
||||
src/include/Makefile
|
||||
src/include/Makefile.in
|
||||
src/include/h5core/Makefile
|
||||
src/include/h5core/Makefile.in
|
||||
src/lib
|
||||
/stamp-h1
|
||||
/svn-prop.tmp
|
||||
/test-driver
|
||||
test/.deps
|
||||
test/Makefile
|
||||
test/Makefile.in
|
||||
test/h5_attach.h5
|
||||
test/h5_attach_test
|
||||
test/h5b_test
|
||||
test/h5u_test
|
||||
tools/.deps
|
||||
tools/Makefile
|
||||
tools/Makefile.in
|
||||
tools/h5PartDcToVtk
|
||||
tools/h5PartSurfaceToVtk
|
||||
tools/h5hutcc
|
||||
tools/vtk2h5grid/.deps
|
||||
tools/vtk2h5grid/Makefile
|
||||
tools/vtk2h5grid/Makefile.in
|
||||
tools/vtk2h5grid/cgun_full.h5
|
||||
tools/vtk2h5grid/cgun_full.vtk
|
||||
tools/vtk2h5grid/vtk2h5grid
|
||||
@@ -6,5 +6,6 @@ Benedikt Oswald (PSI)
|
||||
Wes Bethel (NERSC/LBNL)
|
||||
John Shalf (NERSC/LBNL)
|
||||
Cristina Siegerist (NERSC/LBNL)
|
||||
Mark Howison (NERSC/LBNL)
|
||||
|
||||
Please use h5part@lists.psi.ch for communicaion.
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
*** Copyright Notice ***
|
||||
|
||||
H5hut Copyright (c) 2006-2010, The Regents of the University of California,
|
||||
H5Part Copyright (c) 2006-2009, The Regents of the University of California,
|
||||
through Lawrence Berkeley National Laboratory (subject to receipt of any
|
||||
required approvals from the U.S. Dept. of Energy) and the Paul Scherrer
|
||||
Institut (Switzerland). All rights reserved.
|
||||
|
||||
@@ -0,0 +1,24 @@
|
||||
2008-12-19 Mark Howison <mhowison@lbl.gov>
|
||||
|
||||
* Added support for HDF 1.8.1.
|
||||
|
||||
* Added float32 and int64 versions of the H5Block scalar field
|
||||
read/write functions, using a new naming convention:
|
||||
|
||||
H5Block3dWriteScalarFieldFloat64() (was H5Block3dWriteScalarField())
|
||||
H5Block3dWriteScalarFieldFloat32() (new)
|
||||
H5Block3dWriteScalarFieldInt64() (new)
|
||||
|
||||
* Modified _write_data() in H5Block to write arbitrary data types.
|
||||
|
||||
* Fixed a bug in the configure script which was preventing
|
||||
compilation of the FORTRAN library on Cray XT4 architectures.
|
||||
|
||||
* Added the "--with-mpiposix" option to the configure script to enable
|
||||
the MPI-POSIX VFD in the HDF5 layer.
|
||||
|
||||
2008-11-20 Andreas Adelmann <andreas.adelmann@psi.ch>
|
||||
|
||||
* Fixed a bug in ./test/H5BlockTestAttributes.c
|
||||
|
||||
|
||||
|
||||
Executable
+133
@@ -0,0 +1,133 @@
|
||||
UNAME := $(shell uname | perl -pe 's/(sn\d\d\d\d|jsimpson)/UNICOS\/mk/')
|
||||
# for host specific options
|
||||
HOST := $(shell hostname)
|
||||
|
||||
# for processor-specific options
|
||||
ifeq ($(UNAME), Linux)
|
||||
PROC := $(shell uname -p)
|
||||
endif
|
||||
|
||||
CXX = c++
|
||||
CC = cc
|
||||
H5HOME = /usr/local/hdf5
|
||||
CFLAGS = -g -I$(H5HOME)/include
|
||||
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
|
||||
|
||||
# MacOS-X Serial
|
||||
ifeq ($(UNAME), Darwin)
|
||||
ifeq ($(PARALLEL), yes)
|
||||
CXX = g++
|
||||
CC = mpicc
|
||||
H5HOME = /usr/local
|
||||
CFLAGS = -O -g -I$(H5HOME)/include -DPARALLEL_IO
|
||||
LDFLAGS = -L$(H5HOME)/lib -lmpich -lpmpich -lhdf5 -lz -lm
|
||||
else
|
||||
CXX = c++
|
||||
CC = cc
|
||||
F90 = xlf
|
||||
H5HOME = /usr/local
|
||||
CFLAGS = -O -g -I$(H5HOME)/include
|
||||
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
|
||||
endif
|
||||
endif
|
||||
|
||||
# SGI MIPS/Irix
|
||||
ifeq ($(UNAME), IRIX64)
|
||||
CXX = CC
|
||||
CC = cc
|
||||
F90 = f90
|
||||
ifeq ($(PARALLEL), yes)
|
||||
H5HOME = $(HDF5_DIR)
|
||||
CFLAGS = -64 -O3 -I$(H5HOME)/include -DPARALLEL_IO
|
||||
LDFLAGS = -64 -O3 -L$(H5HOME)/lib -lhdf5 -lz -lmpi -lm
|
||||
else
|
||||
H5HOME = /usr/local
|
||||
CFLAGS = -O3 -I$(H5HOME)/include
|
||||
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
|
||||
endif
|
||||
endif
|
||||
|
||||
# AIX/SP-2 Parallel/serial : Seaborg
|
||||
ifeq ($(UNAME), AIX)
|
||||
ifeq ($(PARALLEL), yes) # parallel
|
||||
CXX = mpCC_r
|
||||
CC = mpxlc_r
|
||||
# H5HOME = /usr/common/usg/hdf5_64/1.4.5-post2/parallel
|
||||
H5HOME = /usr/common/usg/hdf5_64/1.6.1/parallel
|
||||
# /usr/common/usg/hdf5/1.4.4/parallel
|
||||
H4HOME = /usr/common/usg/hdf/default
|
||||
OPT = -qarch=auto -qtune=auto-qcache=auto -O3 -qhot
|
||||
CFLAGS = -q64 -I$(H5HOME)/include
|
||||
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -L$(H4HOME)/lib -lz -lsz -lm
|
||||
else # serial
|
||||
CXX = xlC
|
||||
CC = xlc
|
||||
H5HOME = /usr/common/usg/hdf5/1.4.4/serial
|
||||
H4HOME = /usr/common/usg/hdf/default
|
||||
OPT = -qarch=auto -qtune=auto-qcache=auto -O3 -qhot
|
||||
CFLAGS = -g -bmaxdata:800000000 -bmaxstack:256000000 -I$(H5HOME)/include
|
||||
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -L$(H4HOME)/lib -lz -lm
|
||||
endif
|
||||
endif
|
||||
|
||||
# Linux
|
||||
ifeq ($(UNAME), Linux)
|
||||
# if this machine is NERSC/Davinci Altix system
|
||||
ifeq ($(PROC), ia64)
|
||||
CC = icc
|
||||
CXX = icc
|
||||
|
||||
ifeq ($(PARALLEL), yes)
|
||||
# IA64 Linux Parallel
|
||||
ifeq ($(HOST), davinci)
|
||||
H5HOME = $(HDF5_PAR)
|
||||
MPILIB = -lmpi
|
||||
else
|
||||
H5HOME = /usr/local
|
||||
HDF5_PAR_LIB = -L$(H5HOME)/lib -lhdf5 -lz -lm
|
||||
HDF5_PAR_INCLUDE = -I$(H5HOME)/include
|
||||
MPIHOME = /usr/local
|
||||
MPILIB = -lmpich
|
||||
endif # HOST
|
||||
CFLAGS = -O3 -DPARALLEL_IO -DH5_HAVE_PARALLEL $(HDF5_PAR_INCLUDE)
|
||||
LDFLAGS = $(HDF5_PAR_LIB) $(MPILIB)
|
||||
else # IA64 Linux Serial
|
||||
CFLAGS = -O3 $(HDF5_INCLUDE)
|
||||
LDFLAGS = $(HDF5_LIB) -lm
|
||||
endif # PARALLEL
|
||||
|
||||
# else this is standard IA32 linux
|
||||
else
|
||||
ifeq ($(PARALLEL), yes)
|
||||
# Linux Parallel
|
||||
CC = gcc
|
||||
CXX = g++
|
||||
H5HOME = /usr/local
|
||||
MPIHOME = /usr/local
|
||||
CFLAGS = -O -g -DPARALLEL_IO -DH5_HAVE_PARALLEL -I$(H5HOME)/include
|
||||
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lmpich -lrt -lz -lm
|
||||
else # Linux Serial
|
||||
CXX = g++
|
||||
CC = gcc
|
||||
CFLAGS = -O -g -I$(H5HOME)/include
|
||||
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
|
||||
endif # !PARALLEL
|
||||
endif # PROC!ia64
|
||||
|
||||
endif # !Linux
|
||||
|
||||
ifeq ($(PARALLEL), yes) #parallel
|
||||
ifdef F90
|
||||
all: H5PartTest H5PartTest.o H5Part.o H5PartTestParallel H5PartAndreasTest H5PartF.o
|
||||
else
|
||||
all: H5PartTest H5PartTest.o H5Part.o H5PartTestParallel H5PartAndreasTest
|
||||
endif
|
||||
else
|
||||
ifdef F90
|
||||
all: H5PartTest H5PartTest.o H5Part.o H5PartF.o
|
||||
else
|
||||
all: H5PartTest H5PartTest.o H5Part.o
|
||||
endif
|
||||
endif
|
||||
|
||||
include rules.make
|
||||
@@ -0,0 +1,437 @@
|
||||
==============================================================================
|
||||
README file for H5Part configure
|
||||
==============================================================================
|
||||
|
||||
+ 0. HDF5 library
|
||||
-----------------
|
||||
|
||||
Make sure you have a working version of the HDF5 library installed. If you plan
|
||||
to use parallel I/O you need to use a parallel HDF5 version. Source files and
|
||||
installation instructions are available from the HDF5 website:
|
||||
|
||||
http://www.hdfgroup.org/HDF5/
|
||||
|
||||
|
||||
+ 1. Quick start (If you feel lucky...)
|
||||
----------------------------------------
|
||||
|
||||
For many platforms, where compilers are installed in the "default" location
|
||||
and all the environment variables are set correctly, it should be sufficient
|
||||
to type:
|
||||
|
||||
./configure [OPTIONS] && make [install]
|
||||
|
||||
to have the libraries and test program compiled.
|
||||
|
||||
|
||||
+ 2. Configure line options
|
||||
----------------------------
|
||||
|
||||
To view a full list of configure option, use:
|
||||
|
||||
./configure --help
|
||||
|
||||
(1) Enable options
|
||||
--enable-fortran
|
||||
--enable-parallel
|
||||
--enable-tools
|
||||
--enable-python
|
||||
--enable-64 (only for AIX and Irix)
|
||||
|
||||
(2) Setting compilers related variables manually
|
||||
To assign environment variables (e.g., CC, CFLAGS...), specify them as
|
||||
VAR=VALUE before running configure. For example, if you are using the bash
|
||||
shell, you might type:
|
||||
|
||||
export CC=gcc
|
||||
|
||||
to set the default C compiler. See below for descriptions of some useful
|
||||
variables.
|
||||
|
||||
Compiler environment variables:
|
||||
CC C compiler command
|
||||
CXX C++ compiler command
|
||||
FC Fortran compiler command
|
||||
MPICC MPI-enabled C compiler command
|
||||
MPICXX MPI-enabled C++ compiler command
|
||||
MPIFC MPI-enabled Fortran compiler command
|
||||
CFLAGS flags to append when invoking the C compiler
|
||||
|
||||
Library environment variables:
|
||||
LDFLAGS flags to append when invoking the linker
|
||||
|
||||
(3) Setting prefix for installation manually (by default, the package will
|
||||
install itself in the 'build' subdirectory of your source directory)
|
||||
--prefix=PREFIX install files in PREFIX
|
||||
|
||||
|
||||
+ 3. Platform specific settings for compiling libraries & test programs
|
||||
------------------------------------------------------------------------
|
||||
|
||||
Building
|
||||
make : builds the libraries and test programs
|
||||
make install: builds and installs
|
||||
make clean : removes extraneous object files
|
||||
make distclean : returns configuration to unconfigured state
|
||||
|
||||
As tested on hosts:
|
||||
|
||||
(0) Franklin <franklin.nersc.gov> (CNL - Cray XT4)
|
||||
--------------------------------------------------
|
||||
|
||||
module add hdf5_par
|
||||
module add zlib
|
||||
module add szip
|
||||
export CC=cc CXX=CC FC=ftn MPICC=cc MPICXX=CC MPIFC=ftn
|
||||
export LDFLAGS=$HDF5
|
||||
./configure --enable-fortran --enable-parallel --with-hdf5path=$HDF5_PAR_DIR --with-mpiposix
|
||||
make install
|
||||
|
||||
|
||||
(1) Davinci <davinci.nersc.gov> (Linux"SUSE"-ia64)
|
||||
---------------------------------------------------
|
||||
FIRST THING FIRST!! Type:
|
||||
|
||||
module load intel
|
||||
to have the proper compilers set up for use.
|
||||
|
||||
module load hdf5_par
|
||||
|
||||
[NOTE: module load hdf5 does not work at this moment.
|
||||
Possible installation error of HDF5 on Davinci.]
|
||||
|
||||
|
||||
Brief profile:
|
||||
CC = icc
|
||||
CXX = icc
|
||||
FC = ifort
|
||||
MPICC = icc
|
||||
MPICXX = icc
|
||||
MPIFC = ifort
|
||||
|
||||
If default doesn't work, try:
|
||||
|
||||
For C shell:
|
||||
env CC=icc CXX=icc FC=ifort MPICC=icc MPICXX=icc MPIFC=ifort ./configure && make install
|
||||
|
||||
For Korn or Bourne shell:
|
||||
CC=icc CXX=icc FC=ifort MPICC=icc MPICXX=icc MPIFC=ifort ./configure && make install
|
||||
|
||||
And, of course, you should add configure options, such as --enable-fortran --enable-parallel.
|
||||
|
||||
|
||||
On this host, executing:
|
||||
|
||||
For C shell:
|
||||
env CC=icc CXX=icc FC=ifort MPICC=icc MPICXX=icc MPIFC=ifort ./configure --enable-fortran --enable-parallel && make install
|
||||
|
||||
For Korn or Bourne shell:
|
||||
CC=icc CXX=icc FC=ifort MPICC=icc MPICXX=icc MPIFC=ifort ./configure --enable-fortran --enable-parallel && make install
|
||||
|
||||
has functioned correctly.
|
||||
|
||||
|
||||
To run test program, go to test directory:
|
||||
|
||||
(i) Serial test
|
||||
run:
|
||||
./H5testF
|
||||
./H5PartTest
|
||||
|
||||
(ii) Parallel test
|
||||
run:
|
||||
mpirun 2 H5testFpar
|
||||
mpirun 2 H5PartTestP
|
||||
|
||||
NOTE: Number 2 above is a arbitrary number that indicates the number of processes.
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
(2) Jacquard <jacquard.nersc.gov> (Linux"SUSE"-x86_64)
|
||||
-------------------------------------------------------
|
||||
Brief profile:
|
||||
CC = pathcc
|
||||
CXX = pathCC
|
||||
FC = pathf90
|
||||
MPICC = mpicc
|
||||
MPICXX = mpicxx
|
||||
MPIFC = mpif90
|
||||
|
||||
|
||||
|
||||
If default doesn't work, try:
|
||||
|
||||
For C shell:
|
||||
env CC=pathcc CXX=pathCC FC=pathf90 MPICC=mpicc MPICXX=mpicxx MPIFC=mpif90 ./configure && make install
|
||||
|
||||
For Korn or Bourne shell:
|
||||
CC=pathcc CXX=pathCC FC=pathf90 MPICC=mpicc MPICXX=mpicxx MPIFC=mpif90 ./configure && make install
|
||||
|
||||
And, of course, you should add configure options, such as --enable-fortran --enable-parallel.
|
||||
|
||||
|
||||
|
||||
On this host, executing:
|
||||
|
||||
For C shell:
|
||||
env CC=pathcc CXX=pathCC FC=pathf90 MPICC=mpicc MPICXX=mpicxx MPIFC=mpif90 ./configure --enable-fortran --enable-parallel && make install
|
||||
|
||||
For Korn or Bourne shell:
|
||||
CC=pathcc CXX=pathCC FC=pathf90 MPICC=mpicc MPICXX=mpicxx MPIFC=mpif90 ./configure --enable-fortran --enable-parallel && make install
|
||||
|
||||
has functioned correctly.
|
||||
|
||||
|
||||
|
||||
To run test program, go to test directory:
|
||||
|
||||
(i) Serial test
|
||||
run:
|
||||
./H5testF
|
||||
./H5PartTest
|
||||
|
||||
(ii) Parallel test
|
||||
In Jacquard, we need a script to run parallel programs, since Jacquard does not support interactive parallel processing. Instead, we need to submit the task to a queue. A sample script (run_H5testFpar.scr) may look like below:
|
||||
|
||||
+++++++++++++++++++++++++++++++++++++++
|
||||
#!/bin/csh
|
||||
#PBS -l nodes=1:ppn=2,walltime=00:05:00
|
||||
#PBS -N H5testFpar
|
||||
#PBS -o H5testFpar.out
|
||||
#PBS -e H5testFpar.err
|
||||
#PBS -q debug
|
||||
#PBS -A mpccc
|
||||
#PBS -V
|
||||
|
||||
setenv PBS_OWORKDIR /home/H5Part/test
|
||||
|
||||
cd $PBS_O_WORKDIR
|
||||
mpirun -np 2 ./H5testFpar
|
||||
+++++++++++++++++++++++++++++++++++++++
|
||||
|
||||
Then, we need to submit the task to a queue by running:
|
||||
|
||||
qsub run_H5testFpar.scr
|
||||
|
||||
After processed, the result will appear in H5testFpar.out, and error messages will appear in H5testFpar.err.
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
(3) Bassi <bassi.nersc.ogv> (AIX5.3.0.0-Power 3)
|
||||
-------------------------------------------------
|
||||
FIRST THING FIRST!! Type:
|
||||
|
||||
module load gcc
|
||||
|
||||
to have the proper compilers set up for use.
|
||||
|
||||
Brief profile:
|
||||
CC = cc_r
|
||||
CXX = cc_r
|
||||
FC = xlf_r
|
||||
MPICC = mpcc_r
|
||||
MPICXX = mpcc_r
|
||||
MPIFC = mpxlf_r
|
||||
|
||||
|
||||
|
||||
If default doesn't work, try:
|
||||
|
||||
For C shell:
|
||||
env CC=cc_r CXX=cc_r FC=xlf_r MPICC=mpcc_r MPICXX=mpcc_r MPIFC=mpxlf_r ./configure && make install
|
||||
|
||||
For Korn or Bourne shell:
|
||||
CC=cc_r CXX=cc_r FC=xlf_r MPICC=mpcc_r MPICXX=mpcc_r MPIFC=mpxlf_r ./configure && make install
|
||||
|
||||
And, of course, you should add configure options, such as --enable-fortran --enable-parallel.
|
||||
|
||||
|
||||
|
||||
On this host, executing:
|
||||
|
||||
For C shell:
|
||||
env CC=cc_r CXX=cc_r FC=xlf_r MPICC=mpcc_r MPICXX=mpcc_r MPIFC=mpxlf_r ./configure --enable-fortran --enable-parallel && make install
|
||||
|
||||
For Korn or Bourne shell:
|
||||
CC=cc_r CXX=cc_r FC=xlf_r MPICC=mpcc_r MPICXX=mpcc_r MPIFC=mpxlf_r ./configure --enable-fortran --enable-parallel && make install
|
||||
|
||||
has functioned correctly.
|
||||
|
||||
|
||||
|
||||
To run test program, go to test directory:
|
||||
|
||||
(i) Serial test
|
||||
run:
|
||||
./H5testF
|
||||
./H5PartTest
|
||||
|
||||
(ii) Parallel test
|
||||
run:
|
||||
unsetenv MP_SINGLE_THREAD
|
||||
poe ./H5PartTestP -procs 2 -nodes 1
|
||||
poe ./H5testFpar -procs 2 -nodes 1
|
||||
|
||||
For more details on how to run parallel programs on Bassi, go to:
|
||||
|
||||
http://www.nersc.gov/nusers/resources/bassi/running_jobs/
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
(4) Starsky <starsky.lbl.gov> (Darwin8.5.0-PowerPC)
|
||||
----------------------------------------------------
|
||||
FIRST THING FIRST!! Set environment variables: (in tcsh)
|
||||
|
||||
setenv LD_LIBRARY_PATH /usr/local/g95/lib/gcc-lib/powerpc-apple-darwin8.5.0/4.0.3/
|
||||
setenv PATH ${PATH}:/usr/local/g95/bin
|
||||
|
||||
NOTE: This environment variable setting is specifit to Starsky. It is to make configure find the fortran compiler.
|
||||
|
||||
Brief profile:
|
||||
CC = gcc
|
||||
CXX = g++
|
||||
FC = g95
|
||||
|
||||
|
||||
|
||||
If default doesn't work, try:
|
||||
|
||||
For C shell:
|
||||
env CC=gcc CXX=g++ FC=g95 ./configure && make install
|
||||
|
||||
For Korn or Bourne shell:
|
||||
CC=gcc CXX=g++ FC=g95 ./configure && make install
|
||||
|
||||
And, of course, you should add configure options, such as --enable-fortran --enable-parallel.
|
||||
|
||||
|
||||
|
||||
On this host, executing:
|
||||
|
||||
For C shell:
|
||||
env CC=gcc CXX=g++ FC=g95 ./configure --enable-fortran && make install
|
||||
|
||||
For Korn or Bourne shell:
|
||||
CC=gcc CXX=g++ FC=g95 ./configure --enable-fortran && make install
|
||||
|
||||
has functioned correctly.
|
||||
|
||||
|
||||
|
||||
To run test program, go to test directory:
|
||||
|
||||
(i) Serial test
|
||||
run:
|
||||
./H5testF
|
||||
./H5PartTest
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
(5) Linux AMD64 Visualization group workstations (Linux"SUSE"-x86_64)
|
||||
---------------------------------------------------------
|
||||
Brief profile:
|
||||
CC = gcc
|
||||
CXX = g++
|
||||
FC = g95
|
||||
|
||||
|
||||
|
||||
If default doesn't work, try:
|
||||
|
||||
For C shell:
|
||||
env CC=gcc CXX=g++ FC=g95 ./configure && make install
|
||||
|
||||
For Korn or Bourne shell:
|
||||
CC=gcc CXX=g++ FC=g95 ./configure && make install
|
||||
|
||||
And, of course, you should add configure options, such as --enable-fortran --enable-parallel.
|
||||
|
||||
|
||||
|
||||
On this host, executing:
|
||||
|
||||
For C shell:
|
||||
env CC=gcc CXX=g++ FC=g95 ./configure --enable-fortran && make install
|
||||
|
||||
For Korn or Bourne shell:
|
||||
CC=gcc CXX=g++ FC=g95 ./configure --enable-fortran && make install
|
||||
|
||||
has functioned correctly.
|
||||
|
||||
|
||||
|
||||
To run test program, go to test directory:
|
||||
|
||||
(i) Serial test
|
||||
run:
|
||||
./H5testF
|
||||
./H5PartTest
|
||||
|
||||
|
||||
(6) Cray XT3 @ CSCS gele
|
||||
|
||||
1) modules/3.1.6 9) PrgEnv-pgi/1.4.26 17) xt-lustre-ss/1.4.26
|
||||
2) MySQL/4.0.26 10) xt-pbs/5.3.4 18) Base-opts/1.4.26
|
||||
3) acml/3.0 11) xt-service/1.4.26 19) subversion/1.3.2
|
||||
4) pgi/6.1.4 12) xt-libc/1.4.26 20) zlib/1.2.3
|
||||
5) totalview/7.2.0 13) xt-os/1.4.26 21) szip/2.0
|
||||
6) xt-libsci/1.4.26 14) xt-catamount/1.4.26 22) hdf5/1.6.5
|
||||
7) xt-mpt/1.4.26 15) xt-boot/1.4.26
|
||||
8) xt-pe/1.4.26 16) xt-crms/1.4.26
|
||||
|
||||
|
||||
CFLAGS="-I$H5HOME/include -DF77_SINGLE_UNDERSCORE" LDFLAGS="-L$H5HOME/lib -L$ZHOME/lib" ./configure --enable-parallel --enable-fortran
|
||||
|
||||
|
||||
(7) merlin00 / merlin3
|
||||
|
||||
Currently Loaded Modulefiles:
|
||||
1) hdf5/hdf5-1.6.5 2) root/root-5.10.00 3) mpi/mpich2-1.0.3-pgi-6.1 4) pgi/pgi_64-6.1
|
||||
|
||||
FC=mpif90 ./configure --enable-parallel --enable-fortran
|
||||
|
||||
|
||||
|
||||
|
||||
==============================================================================
|
||||
|
||||
|
||||
+ 4. Trouble shooting (Things to check for...)
|
||||
--------------------------------------------
|
||||
(0) Have you set the LD_LIBRARY_PATH?
|
||||
---Some systems require the user to manually set the environment variable, LD_LIBRARY_PATH. To do so:
|
||||
|
||||
set the environment variable HDF5ROOT or PHDF5ROOT to point to your installation of HDF5 (serial and/or parallel respectively).
|
||||
|
||||
For Korn or Bourne shell:
|
||||
LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${HDF5ROOT}/lib;export LD_LIBRARY_PATH
|
||||
LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:{PHDF5ROOT}/lib;export LD_LIBRARY_PATH
|
||||
|
||||
For C shell:
|
||||
setenv LD_LIBRARY_PATH ${LD_LIBRARY_PATH}:${HDF5ROOT}/lib
|
||||
setenv LD_LIBRARY_PATH ${LD_LIBRARY_PATH}:${PHDF5ROOT}/lib
|
||||
|
||||
Note that the values of HDF5ROOT & PHDF5ROOT will be in the "summary" section when you run configure.
|
||||
|
||||
Not properly set LD_LIBRARY_PATH value may result in a runtime error:
|
||||
|
||||
./H5PartTest: error while loading shared libraries: libhdf5.so.0: cannot open shared object file: No such file or directory
|
||||
|
||||
(1) Are the compilers set correctly?
|
||||
---Check with: which COMPILER
|
||||
|
||||
(2) Have you installed HDF5?
|
||||
---You can get it at: http://vis.lbl.gov/Research/AcceleratorSAPP/index.html
|
||||
|
||||
(3) Have you loaded the proper modules?
|
||||
---It is necessary in Davinci & Bassi, and configure && make install may not work without it.
|
||||
|
||||
|
||||
+4
-4
@@ -1,11 +1,11 @@
|
||||
ACLOCAL_AMFLAGS = -I m4
|
||||
EXTRA_DIST = autogen.sh
|
||||
# Trial by Antino Kim
|
||||
# Top level Makefile.am
|
||||
|
||||
SUBDIRS = \
|
||||
doc \
|
||||
src \
|
||||
test \
|
||||
tools \
|
||||
doc
|
||||
tools
|
||||
|
||||
MAINTAINERCLEANFILES = \
|
||||
config.h \
|
||||
|
||||
Executable
+59
@@ -0,0 +1,59 @@
|
||||
|
||||
# This is a very rudimentary multiarchitecture makefile
|
||||
# You need to uncomment the default block of make variables you need
|
||||
# Some key things to watch for are the following defines
|
||||
# -DREGRESSIONTEST : enables a main(){} inside of
|
||||
# the H5Part.cc file that does simple regression testing.
|
||||
# -DPARALLEL_IO : If you want to use parallel HDF5, you have to
|
||||
# enable this. Otherwise, you get only the serial
|
||||
# implementation of the library.
|
||||
|
||||
# MacOS-X Serial
|
||||
#CXX = c++
|
||||
#CC = cc
|
||||
#F90 = xlf
|
||||
#H5HOME = /usr/local
|
||||
#CFLAGS = -O -g -I$(H5HOME)/include
|
||||
#LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
|
||||
|
||||
# AIX/SP-2 Parallel : Seaborg
|
||||
#CXX = mpCC_r
|
||||
#CC = mpcc_r
|
||||
#F90 = mpxlf
|
||||
#H5HOME = /usr/common/usg/hdf5/1.4.4/parallel
|
||||
#H4HOME = /usr/common/usg/hdf/default
|
||||
#OPT = -qarch=auto -qtune=auto-qcache=auto -O3 -qhot
|
||||
#CFLAGS = -g -bmaxdata:800000000 -bmaxstack:256000000 -I$(H5HOME)/include
|
||||
#LDFLAGS = -L$(H5HOME)/lib -lhdf5 -L$(H4HOME)/lib -lz -lm
|
||||
|
||||
# Linux Serial
|
||||
#CXX = g++
|
||||
#CC = gcc
|
||||
#F90 = g77 # or could be pgif90
|
||||
#CFLAGS = -O -g -I$(H5HOME)/include
|
||||
#LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
|
||||
|
||||
# Linux Jacquard
|
||||
CC = mpicc
|
||||
CXX = mpicxx
|
||||
F90 = mpif90
|
||||
H5HOME = /usr/common/usg/hdf5/1.6.3/parallel
|
||||
CFLAGS = -O2 -DPARALLEL_IO -DH5_HAVE_PARALLEL -I$(H5HOME)/include
|
||||
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
|
||||
|
||||
# Linux Parallel
|
||||
#CC = gcc
|
||||
#CXX = g++
|
||||
#F90 = g77
|
||||
#H5HOME = /usr/local
|
||||
# /usr/common/usg/hdf5/1.6.3/parallel
|
||||
#MPIHOME = /usr/local
|
||||
#CFLAGS = -O -g -DPARALLEL_IO -DH5_HAVE_PARALLEL -I$(H5HOME)/include
|
||||
#LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lmpich -lrt -lz -lm
|
||||
|
||||
all: H5PartTest H5PartTest.o H5Part.o
|
||||
parallel: H5PartTest H5PartTest.o H5Part.o H5PartTestParallel H5PartAndreasTest # parallel regression tests
|
||||
fortran: H5PartF.o # fortran bindings
|
||||
|
||||
include rules.make
|
||||
|
||||
@@ -1,262 +1,20 @@
|
||||
#### H5PART 1.99.10 ###########################################################
|
||||
VERSION 1.4.1
|
||||
*************
|
||||
|
||||
Bugfixes in the malloc wrappers
|
||||
* Added support for HDF 1.8.1.
|
||||
|
||||
Converter from vtk to H5hut added.
|
||||
* Added float32 and int64 versions of the H5Block scalar field
|
||||
read/write functions, using a new naming convention:
|
||||
|
||||
H5Block3dWriteScalarFieldFloat64() (was H5Block3dWriteScalarField())
|
||||
H5Block3dWriteScalarFieldFloat32() (new)
|
||||
H5Block3dWriteScalarFieldInt64() (new)
|
||||
|
||||
Bugfixes in the autotools files.
|
||||
The old functions still exist, but may be removed in the future.
|
||||
|
||||
#### H5PART 1.99.9 ############################################################
|
||||
|
||||
Bugfix in option parsing in tools/h5PartDcToVtk and tools/h5PartSurfaceToVtk
|
||||
|
||||
tools/h5PartDcToVtk and tools/h5PartSurfaceToVtk removed from list of tools
|
||||
to be compiled. These tools should be moved to another repository anyway.
|
||||
|
||||
#### H5PART 1.99.8 ############################################################
|
||||
|
||||
Bugfixes
|
||||
|
||||
#### H5PART 1.99.7 ############################################################
|
||||
|
||||
Linking problem on Linux fixed
|
||||
|
||||
#### H5PART 1.99.6 ############################################################
|
||||
|
||||
|
||||
#### H5PART 1.99.5 ############################################################
|
||||
#### H5PART 1.99.4 ############################################################
|
||||
#### H5PART 1.99.3 ############################################################
|
||||
#### H5PART 1.99.2 ############################################################
|
||||
#### H5PART 1.99.1 ############################################################
|
||||
#### H5PART 1.99 ############################################################
|
||||
|
||||
Renamed type:
|
||||
H5PartFile -> h5_file_t
|
||||
h5part_int64_t -> h5_int64_t
|
||||
|
||||
Renamed functions:
|
||||
|
||||
|
||||
#### H5PART 1.6.6 ############################################################
|
||||
|
||||
Fixed typo (Write instead of Read) in the h5bl_3d_read_scalar_field* Fortran
|
||||
interface.
|
||||
|
||||
Added missing type normalization for int32 type.
|
||||
|
||||
Rewrite of h5pAttrib tool.
|
||||
|
||||
#### H5PART 1.6.5 ############################################################
|
||||
|
||||
Fixed several build errors reported by Iuri Prilepov on Ubuntu 11.04.
|
||||
|
||||
#### H5PART 1.6.4 ############################################################
|
||||
|
||||
Fixed bug where H5PartSetViewIndices was not setting an empty view when the
|
||||
number of elements is 0.
|
||||
|
||||
Set a threshold on the HDF5 alignment parameter so that small metadata writes
|
||||
are not aligned, which causes large gaps in the file.
|
||||
|
||||
#### H5PART 1.6.3 ############################################################
|
||||
|
||||
New build system uses libtool and can build shared libraries.
|
||||
|
||||
Fixed a bug that incorrectly identifies the number of selected points in a view
|
||||
when using H5PartSetViewIndices.
|
||||
|
||||
Fixed bug in Fortran test reported by several people, as well as several
|
||||
incorrect views set in the C test that were causing segfaults.
|
||||
|
||||
Fixed name mismatches in the Fortran interface, and an off-by-one indexing
|
||||
problem.
|
||||
|
||||
#### H5PART 1.6.2 ############################################################
|
||||
|
||||
Removed H5PartSetViewEmpty
|
||||
--------------------------
|
||||
|
||||
An empty view can now be selected with:
|
||||
H5PartSetNumParticles(file, 0);
|
||||
|
||||
Bug Fixes to Attribute Calls in Fortran API
|
||||
-------------------------------------------
|
||||
|
||||
Fixed a problem where attribute values were reverting to zero.
|
||||
|
||||
#### H5PART 1.6.1 ############################################################
|
||||
|
||||
Chunking in the H5Part API
|
||||
--------------------------
|
||||
|
||||
There is now an H5Part equivalent H5PartSetChunkSize to the existing
|
||||
H5BlockDefine3DChunkDims call. Both of these calls enable the chunking
|
||||
mechanism in the underlying HDF5 layer. Chunking is used in combination
|
||||
with the aligned open calls to pad datasets to alignment multiples
|
||||
on disk.
|
||||
|
||||
All Steps Available on Write
|
||||
----------------------------
|
||||
|
||||
Previously, existing steps in a file were only accessible in read-only mode.
|
||||
Now, all steps are available in all modes, including write-truncate and
|
||||
write-append. Thus, it is now possible to overwrite existing data in write
|
||||
mode. To help alert the user to this possibility, a warning is issued every
|
||||
time an existing dataset is written to. Warnings can be printed by setting
|
||||
the verbosity to H5PART_VERB_WARN or higher.
|
||||
|
||||
New Throttling Routine
|
||||
----------------------
|
||||
|
||||
Previously, a throttle factor of N meant that for P processors, the total
|
||||
number of P writes were divided into N batches of P/N writes.
|
||||
|
||||
To better accommodate round-robin lustre striping, the new policy is to
|
||||
execute P/N batches of N writes. Thus, matching N to the number of stripes
|
||||
results in the desirable 1-1 matching of writers to stripes.
|
||||
|
||||
Other Fixes
|
||||
-----------
|
||||
|
||||
* The configure script should correctly detect PGI compilers now.
|
||||
* There was a small memory leak in the Fortran file open calls.
|
||||
* There was a compile error with HDF5 1.6.x due to a missing assignment.
|
||||
|
||||
#### H5PART 1.6 ##############################################################
|
||||
|
||||
Updated Documentation
|
||||
---------------------
|
||||
|
||||
The Fortran API has been added to the doxygen documentation. Most entries have
|
||||
a reference to their respective C API call.
|
||||
|
||||
Regression Test Suite
|
||||
---------------------
|
||||
|
||||
The test subdirectory has been reorganized to include a systematic series
|
||||
of regression tests of common use cases for the API. The goal is to have both
|
||||
complete coverage of the API (every call is exercised) and testing of some
|
||||
unlikely or unsuspected values and cases.
|
||||
|
||||
Currently, the C test covers the entire H5Part API and the Fortran test is
|
||||
still in development.
|
||||
|
||||
Benchmark Utilities
|
||||
-------------------
|
||||
|
||||
Two benchmarking utilities, H5PartBench and H5BlockBench, have been added to
|
||||
the tools collection. Both require the parallel library and have functionality
|
||||
and syntax similar to the IOR benchmark:
|
||||
|
||||
http://sourceforge.net/projects/ior-sio/
|
||||
|
||||
File Mode Flags
|
||||
---------------
|
||||
|
||||
Previously, the only flags used were H5PART_READ, H5PART_WRITE, and
|
||||
H5PART_APPEND, and these were mutually exclusive. Additional flags have been
|
||||
added to select the underlying virtual file driver (VFD) that HDF5 uses in
|
||||
parallel mode and to accommodate the lustre filesystem:
|
||||
|
||||
H5PART_VFD_MPIPOSIX (use the MPI-POSIX driver, which bypasses MPI-IO)
|
||||
H5PART_VFD_MPIIO_IND (use MPI-IO in independent mode)
|
||||
H5PART_FS_LUSTRE (activate H5P tunings for the lustre stripe size)
|
||||
|
||||
These flags can be specified using the typical bitwise OR method, e.g.
|
||||
|
||||
char flag = H5PART_WRITE | H5PART_VFD_MPIPOSIX | H5PART_FS_LUSTRE;
|
||||
|
||||
will select write mode with these two additional options.
|
||||
|
||||
The parallel library now defaults to using the MPI-IO collective mode driver
|
||||
(previously it used independent mode). The collective buffering algorithm in
|
||||
the Cray XT4/5 environment has been substantially improved in the last year,
|
||||
and defaulting to collective mode allows us to take advantage of these
|
||||
improvements automatically.
|
||||
|
||||
There are also new open calls H5PartOpenAlign and H5PartOpenParallelAlign that
|
||||
take an additional 'alignment' value. This value is passed to HDF5 and used to
|
||||
pad out objects so that they align to filesystem boundaries. For instance, it
|
||||
would make sense to use the stripe size as the alignment value when writing to
|
||||
a lustre filesystem.
|
||||
|
||||
Unified 'View' Model
|
||||
--------------------
|
||||
|
||||
Views are now supported in both read and write mode (previously only supported
|
||||
in read mode). It is possible to specify non-sensical views: you could for
|
||||
instance specify a read view that is larger than the dataset on disk. Or you
|
||||
could create a write view that is larger than the data in memory. In those
|
||||
cases, you will encounter an error when you try to perform a read or write
|
||||
operation on a dataset.
|
||||
|
||||
There are two new methods for selecting views. H5PartSetNumParticlesStrided
|
||||
selects a view with $n$ particles per processor, but such that the data in
|
||||
memory is expected to have a 'stride' factor. For instance, if you have
|
||||
particle data with fields $x$ and $y$ and a single array with entries
|
||||
$x1,y1,x2,y2...$, then the stride factor is 2. Striding works for both reads
|
||||
and writes and only affects the view of memory: individual fields are still
|
||||
stored as individual arrays on disk.
|
||||
|
||||
The second new method is H5PartSetViewIndices, which allows for point
|
||||
selections of datasets. You can pass a list of indices for the points you
|
||||
want to select. This is useful, for instance, when interfacing with FastBit
|
||||
to perform queries that select a small subset of non-contiguous particles.
|
||||
|
||||
Because views are now supported on write, it is possible to write a dataset
|
||||
using multiple 'passes' or to leave some values unwritten.
|
||||
|
||||
Also, all views are now *inclusive*, so that a view of (0,9) corresponds
|
||||
to the 10 items 0, 1, 2, ... 9.
|
||||
|
||||
Internal Handling of Dataspaces
|
||||
-------------------------------
|
||||
|
||||
H5PartSetNumParticles and H5PartSetNumParticlesStrided now share the same
|
||||
HDF5 dataspace state in the H5PartFile struct with the calls that modify
|
||||
the view (H5PartSetView etc.). Previously, the memory and disk dataspaces
|
||||
were regenerated from the view on every read access, which was unnecessary.
|
||||
|
||||
Autogeneration of API Calls
|
||||
---------------------------
|
||||
|
||||
Python scripts have been added to automatically generate read/write call
|
||||
variants for different data types.
|
||||
|
||||
Renamed Fortran Include
|
||||
-----------------------
|
||||
|
||||
The automake system no longer greps the *F90.inc files to generate an include
|
||||
called 'H5Part.inc'. Instead, the *F90.inc files have been renamed to *.f90,
|
||||
and awk is used to generate an 'H5PartF.h' file (the same naming convention
|
||||
as in MPI's 'mpif.h').
|
||||
|
||||
The change to *.f90 was necessary to facilitate integration of the Fortran
|
||||
API into doxygen. Note that the *.f90 files will not compile, nor can they
|
||||
be included directly. Simply use
|
||||
|
||||
include 'H5PartF.h'
|
||||
|
||||
in your Fortran code to include all the definitions for Fortran H5Part/H5Block
|
||||
calls.
|
||||
|
||||
64 Char Limit on Dataset Names
|
||||
------------------------------
|
||||
|
||||
Previously, a user could overrun internal buffers for dataset names. Now, a
|
||||
fixed limit of 64 chars is imposed. Dataset names that are longer than this are
|
||||
truncated and a warning is printed. We expect that most users are using
|
||||
short canonical names like x, px, id, etc.
|
||||
|
||||
Changes to Existing API
|
||||
-----------------------
|
||||
|
||||
The H5BlockGetFieldInfo and H5BlockGetFieldInfoByName calls now both include
|
||||
a parameter for the 'type' of the field.
|
||||
|
||||
|
||||
#### H5PART 1.4 ##############################################################
|
||||
VERSION 1.4.0
|
||||
*************
|
||||
|
||||
Error Handling
|
||||
--------------
|
||||
|
||||
@@ -0,0 +1,57 @@
|
||||
For more information on using the H5Part API, see the H5Part website:
|
||||
|
||||
http://www-vis.lbl.gov/Research/AcceleratorSAPP/
|
||||
|
||||
|
||||
Motivation
|
||||
----------
|
||||
|
||||
Particle based simulations of accelerator beam-lines, especially in six
|
||||
dimensional phase space, generate vast amounts of data. Even though a subset
|
||||
of statistical information regarding phase space or analysis needs to be
|
||||
preserved, reading and writing such enormous restart files on massively
|
||||
parallel supercomputing systems remains challenging.
|
||||
|
||||
H5Part is a very simple data storage schema and provides an API that
|
||||
simplifies the reading/writing of the data to the HDF5 file format. An
|
||||
important foundation for a stable visualization and data analysis environment
|
||||
is a stable and portable file storage format and its associated APIs. The
|
||||
presence of a "common file storage format," including associated APIs, will
|
||||
help foster a fundamental level of interoperability across the project's
|
||||
software infrastructure. It will also help ensure that key data analysis
|
||||
capabilities are present during the earliest phases of the software development
|
||||
effort.
|
||||
|
||||
H5Part is built on top of the HDF5 (Hierarchical Data Format) library. HDF5
|
||||
offers a self-describing machine-independent binary file format that supports
|
||||
scalable parallel I/O performance for MPI codes on a variety of supercomputing
|
||||
systems, and works equally well on laptop computers. The API is available for
|
||||
C, C++, and Fortran codes. The H5Part file format and APIs enable disparate
|
||||
research groups with different simulation implementations to transparently
|
||||
share datasets and data analysis tools. For instance, the common file format
|
||||
will enable groups that depend on completely different simulation
|
||||
implementations to share data analysis tools.
|
||||
|
||||
|
||||
File Organization and API
|
||||
-------------------------
|
||||
|
||||
The proposed file storage format uses HDF5 for the lowlevel file storage and a
|
||||
simple API to provide a high-level interface to that file format. A programmer
|
||||
can either use the H5Part API to access the data files or write directly to the
|
||||
file format using some simple conventions for organizing and naming the objects
|
||||
stored in the file.
|
||||
|
||||
In order to store Particle Data in the HDF5 file format, we have formalized the
|
||||
hierarchical arrangement of the datasets and naming conventions for the groups
|
||||
and associated datasets. The sample H5Part API formally encodes these
|
||||
conventions in order to provide a simple and uniform way to access these files
|
||||
from C, C++, and Fortran codes. The API makes it easier to write very portable
|
||||
data adaptors for visualization tools in order to expand the number of tools
|
||||
available to access the data. Even so, anyone can use the HDF5 h5ls utility to
|
||||
examine the organization of the H5Part files and even write their own
|
||||
HDF5-based interface for reading and writing the file format. The standards
|
||||
offered by the sample API are completely independent of the standard for
|
||||
organizing data within the file.The file format supports the storage of
|
||||
multiple timesteps of datasets that contain multiple fields.
|
||||
|
||||
|
||||
+24
-26
@@ -1,48 +1,46 @@
|
||||
#!/bin/sh
|
||||
# Run this to generate all the initial makefiles, etc.
|
||||
|
||||
ACLOCAL_FLAGS="-I m4 $ACLOCAL_FLAGS"
|
||||
LIBTOOLIZE_FLAGS="--force $LIBTOOLIZE_FLAGS"
|
||||
AUTOMAKE_FLAGS="--add-missing --copy --foreign $AUTOMAKE_FLAGS"
|
||||
|
||||
LIBTOOLIZE=`which libtoolize`
|
||||
if [ "$LIBTOOLIZE" = "" ]; then
|
||||
LIBTOOLIZE=`which glibtoolize`
|
||||
fi
|
||||
if [ "$LIBTOOLIZE" = "" ]; then
|
||||
echo "libtoolize not found" 1>&2
|
||||
exit 1
|
||||
fi
|
||||
|
||||
echo "+ making misc files ..."
|
||||
touch NEWS README AUTHORS ChangeLog
|
||||
echo
|
||||
$LIBTOOLIZE $LIBTOOLIZE_FLAGS || {
|
||||
echo "libtoolize failed"
|
||||
exit 1
|
||||
}
|
||||
echo
|
||||
echo
|
||||
echo "+ running aclocal ..."
|
||||
aclocal $ACLOCAL_FLAGS || {
|
||||
echo "aclocal failed - check that all needed development files are present on system"
|
||||
exit 1
|
||||
echo
|
||||
echo "aclocal failed - check that all needed development files are present on system"
|
||||
exit 1
|
||||
}
|
||||
echo
|
||||
echo
|
||||
echo
|
||||
echo
|
||||
echo "+ running autoheader ... "
|
||||
autoheader || {
|
||||
echo "autoheader failed"
|
||||
exit 1
|
||||
echo
|
||||
echo "autoheader failed"
|
||||
exit 1
|
||||
}
|
||||
echo
|
||||
echo
|
||||
echo
|
||||
echo "+ running autoconf ... "
|
||||
autoconf || {
|
||||
echo "autoconf failed"
|
||||
exit 1
|
||||
echo
|
||||
echo "autoconf failed"
|
||||
exit 1
|
||||
}
|
||||
echo
|
||||
echo
|
||||
echo
|
||||
echo "+ running automake ... "
|
||||
automake $AUTOMAKE_FLAGS || {
|
||||
echo "automake failed"
|
||||
exit 1
|
||||
automake -a -c --foreign || {
|
||||
echo
|
||||
echo "automake failed"
|
||||
exit 1
|
||||
}
|
||||
echo
|
||||
echo
|
||||
echo
|
||||
|
||||
|
||||
+1469
File diff suppressed because it is too large
Load Diff
+1563
File diff suppressed because it is too large
Load Diff
+450
-223
@@ -1,88 +1,85 @@
|
||||
AC_INIT([H5hut], [1.99.11], [h5part@lists.psi.ch], H5hut)
|
||||
AC_PREREQ(2.60)
|
||||
AC_CONFIG_HEADERS(config.h)
|
||||
AC_CONFIG_MACRO_DIR([m4])
|
||||
AM_INIT_AUTOMAKE
|
||||
# Every configure script must call AC_INIT before doing anything else.
|
||||
# AC_INIT (package, version, [bug-report], [tarname])
|
||||
AC_INIT([H5Part], [1.4.1], [h5part@lists.psi.ch], H5Part)
|
||||
|
||||
ENABLE_DEBUG='no'
|
||||
ENABLE_C='yes'
|
||||
ENABLE_FORTRAN='no'
|
||||
ENABLE_PARALLEL='no'
|
||||
|
||||
# Ensure that a recent enough version of Autoconf is being used.
|
||||
# If the version of Autoconf being used to create configure is earlier than version,
|
||||
# print an error message to the standard error output and do not create configure.
|
||||
#AC_PREREQ(2.59)
|
||||
|
||||
|
||||
# should be called right after AC_INIT.
|
||||
# configure scripts can create a C header file containing `#define' directives.
|
||||
# The AC_CONFIG_HEADERS macro selects this kind of output.
|
||||
AC_CONFIG_HEADER(config.h)
|
||||
|
||||
###############################################################################
|
||||
# --enable-xxx and --with-xxx Arguments
|
||||
AC_ARG_ENABLE(
|
||||
[debug],
|
||||
[AS_HELP_STRING([--enable-debug], [Compile with debug flags [default=no]])],
|
||||
[ENABLE_DEBUG=$enableval])
|
||||
AM_CONDITIONAL([ENABLE_DEBUG], [test "$ENABLE_DEBUG" = "yes"])
|
||||
################# --enable-xxx and --with-xxx Argument ########################
|
||||
###############################################################################
|
||||
|
||||
AC_ARG_ENABLE(
|
||||
[c],
|
||||
[AS_HELP_STRING([--enable-c],
|
||||
[Compile the C interface [default=yes]])],
|
||||
[ENABLE_C=$enableval])
|
||||
AM_CONDITIONAL([ENABLE_C], [test "$ENABLE_C" = "yes"])
|
||||
[64],
|
||||
[AC_HELP_STRING([--enable-64],
|
||||
[Compile using 64-bit flags [default=no]])],
|
||||
[USE_64=$enableval])
|
||||
|
||||
AC_ARG_ENABLE(
|
||||
[fortran],
|
||||
[AS_HELP_STRING([--enable-fortran],
|
||||
[AC_HELP_STRING([--enable-fortran],
|
||||
[Compile the Fortran interface [default=no]])],
|
||||
[ENABLE_FORTRAN=$enableval])
|
||||
AM_CONDITIONAL([ENABLE_FORTRAN], [test "$ENABLE_FORTRAN" = "yes"])
|
||||
[USE_FORTRAN=$enableval])
|
||||
|
||||
AC_ARG_ENABLE(
|
||||
[parallel],
|
||||
[AS_HELP_STRING([--enable-parallel],
|
||||
[AC_HELP_STRING([--enable-parallel],
|
||||
[Compile the MPI/IO interface [default=no]])],
|
||||
[ENABLE_PARALLEL=$enableval])
|
||||
AM_CONDITIONAL([ENABLE_PARALLEL], [test "$ENABLE_PARALLEL" = "yes"])
|
||||
[USE_PARALLEL=$enableval])
|
||||
|
||||
AC_ARG_ENABLE(
|
||||
[large-indices],
|
||||
[AC_HELP_STRING([--enable-large-indices],
|
||||
[Compile with 64bit local IDs and indices [default=no]])],
|
||||
[USE_LARGE_INDICES=$enableval])
|
||||
|
||||
AC_ARG_ENABLE(
|
||||
[experimental],
|
||||
[AS_HELP_STRING([--enable-experimental],
|
||||
[Compile experimental code [default=no]])],
|
||||
[ENABLE_EXPERIMENTAL=$enableval])
|
||||
AM_CONDITIONAL([ENABLE_EXPERIMENTAL], [test "$ENABLE_EXPERIMENTAL" = "yes"])
|
||||
|
||||
AC_ARG_ENABLE(
|
||||
[vtkconverter],
|
||||
[AS_HELP_STRING([--enable-vtkconverter],
|
||||
[Compile the vtk to H5hut converter for grids [default=no]])],
|
||||
[ENABLE_VTKCONVERTER=$enableval])
|
||||
AM_CONDITIONAL([ENABLE_VTKCONVERTER], [test "$ENABLE_VTKCONVERTER" = "yes"])
|
||||
[tools],
|
||||
[AC_HELP_STRING([--enable-tools],
|
||||
[Compile h5part tools [default=no]])],
|
||||
[USE_TOOLS=$enableval])
|
||||
|
||||
AC_ARG_WITH(
|
||||
[hdf5],
|
||||
[AS_HELP_STRING([--with-hdf5],
|
||||
[path to HDF5 installation [default=""]])],
|
||||
[HDF5_PREFIX=$withval], [HDF5_PREFIX=""])
|
||||
|
||||
AC_ARG_WITH(
|
||||
[mpi],
|
||||
[AS_HELP_STRING([--with-mpi],
|
||||
[mpipath],
|
||||
[AC_HELP_STRING([--with-mpipath],
|
||||
[path to MPI installation [default=""]])],
|
||||
[PATH=$MPI_PREFIX/bin:$PATH])
|
||||
[MPIPATH=$withval], [MPIPATH=""])
|
||||
|
||||
AC_ARG_WITH(
|
||||
[lustre],
|
||||
[AS_HELP_STRING([--with-lustre],
|
||||
[path to lustre user API [default=""]])],
|
||||
[LUSTREPATH=$withval], [LUSTREPATH=""])
|
||||
[hdf5path],
|
||||
[AC_HELP_STRING([--with-hdf5path],
|
||||
[path to HDF5 installation [default=""]])],
|
||||
[HDF5PATH=$withval], [HDF5PATH=""])
|
||||
|
||||
AC_ARG_WITH(
|
||||
[parmetis],
|
||||
[AC_HELP_STRING([--with-parmetis],
|
||||
[path to ParMETIS API [default=""]])],
|
||||
[PARMETISPATH=$withval], [PARMETISPATH=""])
|
||||
[mpiposix],
|
||||
[AC_HELP_STRING([--with-mpiposix],
|
||||
[enable MPI-POSIX VFD in HDF5 [default=no]])],
|
||||
[USE_MPIPOSIX=$enableval])
|
||||
|
||||
|
||||
###############################################################################
|
||||
################# A SIMPLE WORK AROUND TO USE ENV. VARS #######################
|
||||
###############################################################################
|
||||
|
||||
SAVE_CC=$CC
|
||||
SAVE_CXX=$CXX
|
||||
SAVE_FC=$FC
|
||||
SAVE_MPICC=$MPICC
|
||||
SAVE_MPICXX=$MPICXX
|
||||
SAVE_MPIFC=$MPIFC
|
||||
SAVE_MPILIB=$MPILIB
|
||||
SAVE_MPIINC=$MPIINC
|
||||
SAVE_CFLAGS=$CFLAGS
|
||||
CFLAGS=''
|
||||
SAVE_FFLAGS=$FFLAGS
|
||||
SAVE_MPIROOT=$MPIROOT
|
||||
SAVE_HDF5ROOT=$HDF5ROOT
|
||||
SAVE_LDFLAGS=$LDFLAGS
|
||||
|
||||
###############################################################################
|
||||
############### PATH SERACH FUNCTION - to be used later... ####################
|
||||
###############################################################################
|
||||
@@ -114,73 +111,79 @@ PATH_Search() {
|
||||
return
|
||||
}
|
||||
|
||||
|
||||
###############################################################################
|
||||
# MISC SETTINGS INCLUDING C & C++ COMPILER SETTING
|
||||
|
||||
############# MISC SETTINGS INCLUDING C & C++ COMPILER SETTING ################
|
||||
###############################################################################
|
||||
# Compute the canonical host-system type variable, host, and its three
|
||||
# individual parts host_cpu, host_vendor, and host_os.
|
||||
AC_CANONICAL_HOST
|
||||
AC_PROG_MAKE_SET
|
||||
|
||||
# debug enabled?
|
||||
AC_MSG_CHECKING([if debug is enabled])
|
||||
if test "X$ENABLE_DEBUG" = "Xyes"; then
|
||||
AC_MSG_RESULT([yes])
|
||||
CFLAGS="$CFLAGS -g -Wall"
|
||||
CXXFLAGS="$CFLAGS -g -Wall"
|
||||
FFLAGS="$FFLAGS -g"
|
||||
|
||||
uname=`uname -s`
|
||||
if test $uname = "AIX"; then
|
||||
AC_MSG_CHECKING([if system is AIX])
|
||||
AC_MSG_RESULT([OK])
|
||||
|
||||
# If on AIX, define _ALL_SOURCE. Allows the use of some BSD functions.
|
||||
# Should be called before any macros that run the C compiler.
|
||||
AC_AIX
|
||||
fi
|
||||
|
||||
|
||||
# Determine a C compiler to use.
|
||||
# If CC is not already set in the environment, check for gcc and cc, then
|
||||
# for other C compilers.
|
||||
# Set output variable CC to the name of the compiler found.
|
||||
AC_PROG_CC(pathcc icc cc_r gcc cc)
|
||||
|
||||
# AC_PROG_CC doesn't pick up cc_r in Bassi. The following AC_PATH_PROGS
|
||||
# is the fix.
|
||||
AC_PATH_PROGS([BAS_CC], [cc_r], [], [$PATH])
|
||||
|
||||
# if BAS_CC not empty
|
||||
if test -n "$BAS_CC"; then
|
||||
AC_MSG_CHECKING([CC setting for Bassi])
|
||||
CC=$BAS_CC
|
||||
AC_MSG_RESULT([CC = $CC])
|
||||
fi
|
||||
|
||||
|
||||
# Determine a C++ compiler to use.
|
||||
# Check if the environment variable CXX or CCC (in that order) is set;
|
||||
# if so, then set output variable CXX to its value.
|
||||
# Otherwise, if the macro is invoked without an argument,
|
||||
# then search for a C++ compiler under the likely names (first g++ and c++
|
||||
# then other names).
|
||||
# If none of those checks succeed, then as a last resort set CXX to g++.
|
||||
AC_PROG_CXX(pathCC icc cc_r g++ gcc cc)
|
||||
|
||||
|
||||
# DAVINCI SPECIFIC!!!
|
||||
AC_MSG_CHECKING([for icc linker -lstdc++ flag])
|
||||
if test ${CXX} = "icc"; then
|
||||
AC_MSG_RESULT([yes])
|
||||
STDCXX="-lstdc++"
|
||||
else
|
||||
AC_MSG_RESULT([no])
|
||||
AC_MSG_RESULT([no])
|
||||
fi
|
||||
|
||||
# Determine a C/C++ compiler to use.
|
||||
if test "x$ENABLE_PARALLEL" = "xyes"; then
|
||||
CCOMPILERS="mpicc"
|
||||
CXXCOMPILERS="mpic++"
|
||||
else
|
||||
CCOMPILERS="pgcc pathcc icc gcc cc_r cc"
|
||||
CXXCOMPILERS="pgcc pathcc icc g++ cc_r c++"
|
||||
fi
|
||||
|
||||
AC_PROG_CC($CCOMPILERS)
|
||||
CC=`which $CC`
|
||||
AC_PROG_CXX($CXXCOMPILERS)
|
||||
CXX=`which $CXX`
|
||||
|
||||
AC_PROG_CC_C99
|
||||
if test "x$ac_cv_prog_cc_c99" = "xno"; then
|
||||
AC_MSG_ERROR([Cannot set C compiler to use C99 standard!])
|
||||
exit 1
|
||||
fi
|
||||
|
||||
# Set output variable INSTALL to the path of a BSD-compatible install program,
|
||||
# if one is found in the current PATH.
|
||||
# Otherwise, set INSTALL to `dir/install-sh -c`
|
||||
AC_PROG_INSTALL
|
||||
AC_PROG_AWK
|
||||
|
||||
# Disable shared libraries by default: can be enabled with --enable-shared
|
||||
LT_INIT([disable-shared])
|
||||
AC_PROG_LIBTOOL
|
||||
|
||||
# AM_INIT_AUTOMAKE is required to use autoconf with automake
|
||||
AM_INIT_AUTOMAKE()
|
||||
|
||||
|
||||
AC_PROG_RANLIB
|
||||
|
||||
# Default prefix for bindir, etc... (eg >> ./build/bin)
|
||||
AC_PREFIX_DEFAULT(`pwd`/build)
|
||||
|
||||
# Checks for header files.
|
||||
AC_CHECK_HEADERS([fcntl.h limits.h stdint.h stdlib.h string.h sys/ioctl.h unistd.h])
|
||||
|
||||
# Checks for typedefs, structures, and compiler characteristics.
|
||||
AC_HEADER_STDBOOL
|
||||
AC_C_INLINE
|
||||
AC_TYPE_INT16_T
|
||||
AC_TYPE_INT32_T
|
||||
AC_TYPE_INT64_T
|
||||
AC_TYPE_SIZE_T
|
||||
AC_TYPE_SSIZE_T
|
||||
AC_TYPE_UINT16_T
|
||||
AC_TYPE_UINT32_T
|
||||
AC_TYPE_UINT64_T
|
||||
AC_CHECK_TYPES([ptrdiff_t])
|
||||
|
||||
# Checks for library functions.
|
||||
AC_FUNC_MALLOC
|
||||
AC_FUNC_REALLOC
|
||||
AC_CHECK_FUNCS([memmove memset pow strchr strdup strerror strstr])
|
||||
|
||||
# AC_DEFINE_UNQUOTED (variable, value, [description])
|
||||
# Define the C preprocessor variable variable to value
|
||||
@@ -192,33 +195,47 @@ AC_DEFINE_UNQUOTED(MY_GNUNAME, "${host_cpu}-${host_vendor}-${host_os}", "")
|
||||
AC_DEFINE_UNQUOTED(MY_UNAME, "$uname", "")
|
||||
|
||||
|
||||
###############################################################################
|
||||
# PROCESS ARGUMENTS
|
||||
|
||||
# C enabled?
|
||||
AC_MSG_CHECKING([if C interface enabled])
|
||||
if test "X$ENABLE_C" = "Xyes"; then
|
||||
###############################################################################
|
||||
######################## CONFIGURE LINE OPTIONS ###############################
|
||||
###############################################################################
|
||||
|
||||
###################### 64-bit compilation enabled #############################
|
||||
AC_MSG_CHECKING([if 64-bit compilation is enabled])
|
||||
|
||||
|
||||
# If --enable-64 is set in the configure line
|
||||
if test "X$USE_64" = "Xyes"; then
|
||||
AC_MSG_RESULT([yes])
|
||||
if test $uname = "AIX"; then
|
||||
CFLAGS="$CFLAGS -q64"
|
||||
FFLAGS="$FFLAGS -q64"
|
||||
fi
|
||||
|
||||
if test $uname = "IRIX64"; then
|
||||
CFLAGS="$CFLAGS -64"
|
||||
FFLAGS="$FFLAGS -64 -fPIC -fno-second-underscore"
|
||||
fi
|
||||
else
|
||||
AC_MSG_RESULT([no])
|
||||
AC_MSG_RESULT([no])
|
||||
fi
|
||||
|
||||
# fortran enabled?
|
||||
|
||||
############################ fortran enabled ##################################
|
||||
AC_MSG_CHECKING([if fortran interface enabled])
|
||||
if test "X$ENABLE_FORTRAN" = "Xyes"; then
|
||||
if test "X$USE_FORTRAN" = "Xyes"; then
|
||||
AC_MSG_RESULT([yes])
|
||||
|
||||
if test "X$ENABLE_PARALLEL" = "Xyes"; then
|
||||
AC_PROG_FC(mpif90 mpif77)
|
||||
else
|
||||
AC_PROG_FC(pgf90 ifort xlf_r pathf90 g95 g90 ftn gfortran)
|
||||
fi
|
||||
FC=`which $FC`
|
||||
AC_PROG_FC(ifort xlf_r pathf90 g95 g90 ftn gfortran)
|
||||
if test -z "$FC" ; then
|
||||
AC_MSG_ERROR([Cannot find a Fortran compiler!])
|
||||
AC_MSG_ERROR([Cannot find a fortran compiler!!!])
|
||||
exit 1
|
||||
fi
|
||||
|
||||
if test ! $uname = "AIX"; then
|
||||
FFLAGS="${FFLAGS} -fPIC"
|
||||
fi
|
||||
|
||||
if test $FC = "g90"; then
|
||||
FFLAGS="${FFLAGS} -fno-second-underscore"
|
||||
fi
|
||||
@@ -228,153 +245,363 @@ if test "X$ENABLE_FORTRAN" = "Xyes"; then
|
||||
fi
|
||||
|
||||
AC_MSG_CHECKING([symbol convention in object files])
|
||||
`cd src/Fortran && rm -f TestUnderscore.o TestUnderscoreC.o TestUnderscore`
|
||||
`cd src/Fortran && ${FC} ${FFLAGS} -c TestUnderscore.f`
|
||||
`cd src/Fortran && ${CC} ${CFLAGS} -c TestUnderscoreC.c`
|
||||
`cd src/Fortran && ${FC} ${FFLAGS} -o TestUnderscore TestUnderscore.o TestUnderscoreC.o`
|
||||
`cd src && rm -f TestUnderscore.o TestUnderscoreC.o TestUnderscore`
|
||||
`cd src && ${FC} ${FFLAGS} -c TestUnderscore.f`
|
||||
`cd src && ${CC} ${CFLAGS} -c TestUnderscoreC.c`
|
||||
# `cd src && ${FC} ${FFLAGS} -o TestUnderscore TestUnderscore.o TestUnderscoreC.o -lc`
|
||||
`cd src && ${FC} ${FFLAGS} -o TestUnderscore TestUnderscore.o TestUnderscoreC.o`
|
||||
|
||||
if test -f src/Fortran/TestUnderscore ; then
|
||||
`cd src/Fortran && ./TestUnderscore > Underscore.h`
|
||||
if test -f src/TestUnderscore ; then
|
||||
UNDERSCORE_H=Underscore.h
|
||||
`cd src && ./TestUnderscore > Underscore.h`
|
||||
AC_MSG_RESULT([ok])
|
||||
else
|
||||
AC_MSG_RESULT([nok])
|
||||
AC_MSG_ERROR([Cannot determine the symbol convention for Fortran object files!])
|
||||
AC_MSG_ERROR([Cannot build fortran executables!!!])
|
||||
exit 1
|
||||
fi
|
||||
|
||||
else
|
||||
AC_MSG_RESULT([no])
|
||||
fi
|
||||
|
||||
######################## large indices enabled ###########################
|
||||
AC_MSG_CHECKING([if large indices are enabled])
|
||||
if test "X$USE_LARGE_INDICES" = "Xyes"; then
|
||||
AC_MSG_RESULT([yes])
|
||||
CFLAGS="${CFLAGS} -DUSE_LARGE_INDICES"
|
||||
else
|
||||
AC_MSG_RESULT([no])
|
||||
fi
|
||||
|
||||
######################## parallel interface enabled ###########################
|
||||
AC_MSG_CHECKING([if parallel interface enabled])
|
||||
if test "X$ENABLE_PARALLEL" = "Xyes"; then
|
||||
if test "X$USE_PARALLEL" = "Xyes"; then
|
||||
AC_MSG_RESULT([yes])
|
||||
AM_CPPFLAGS="${AM_CPPFLAGS} -DPARALLEL_IO -DMPICH_IGNORE_CXX_SEEK"
|
||||
|
||||
if test "X$ENABLE_EXPERIMENTAL" = "Xyes"; then
|
||||
AC_MSG_CHECKING([for ParMETIS])
|
||||
if test "X$PARMETISPATH" != "X"; then
|
||||
AM_CPPFLAGS="$AM_CPPFLAGS -I$PARMETISPATH/include"
|
||||
AM_LDFLAGS="$AM_LDFLAGS -L$PARMETISPATH/lib"
|
||||
fi
|
||||
CFLAGS="${CFLAGS} -DPARALLEL_IO -DH5_HAVE_PARALLEL -DMPICH_IGNORE_CXX_SEEK"
|
||||
|
||||
LIBS="$LIBS -lparmetis -lmetis"
|
||||
AC_TRY_LINK([#include <parmetis.h>], [
|
||||
ParMETIS_V3_PartGeom (NULL, NULL, NULL, NULL, NULL);],
|
||||
[AC_MSG_RESULT([yes]); r='yes'], [AC_MSG_RESULT([no]); r='no'] )
|
||||
AC_MSG_CHECKING([if we can compile MPI code without setting flags])
|
||||
AC_TRY_LINK([#include "mpi.h"], [
|
||||
MPI_Comm comm;
|
||||
int n;
|
||||
MPI_Comm_size( comm, &n ); ],
|
||||
[AC_MSG_RESULT([yes]); r='yes'], [AC_MSG_RESULT([no]); r='no'] )
|
||||
|
||||
if test "X$USE_MPIPOSIX" = "Xyes"; then
|
||||
CFLAGS="${CFLAGS} -DH5PART_MPIPOSIX"
|
||||
fi
|
||||
|
||||
if test "X$r" = "Xno"; then
|
||||
AC_PATH_PROGS([MPICC], [mpicc mpcc_r], [], [$PATH])
|
||||
AC_PATH_PROGS([MPICXX], [mpicxx mpcc_r], [], [$PATH])
|
||||
if test -z "$MPICC" -o -z "$MPICXX"; then
|
||||
AC_MSG_CHECKING([for MPI root ])
|
||||
AC_MSG_RESULT([])
|
||||
if test -n "$MPIROOT"; then
|
||||
P=${MPIROOT}
|
||||
elif test -n "$MPIHOME"; then
|
||||
P=${MPIHOME}
|
||||
elif test -n "$MPIPATH"; then
|
||||
P=${MPIPATH}
|
||||
else
|
||||
P=''
|
||||
P="$P /usr"
|
||||
P="$P /usr/local"
|
||||
P="$P /usr/local/mpi"
|
||||
P="$P /usr/local/packages/mpi"
|
||||
P="$P /usr/local/mpich2"
|
||||
P="$P /usr/local/mpich"
|
||||
P="$P /opt/xt-mpt/default/mpich2-64/P2"
|
||||
fi
|
||||
PATH_Search MPIROOT "$P" include/mpi.h
|
||||
if test ! -n "$MPIROOT"; then
|
||||
AC_MSG_ERROR([Cannot determine MPI root!!!])
|
||||
exit 1
|
||||
fi
|
||||
|
||||
if test -e "${MPIROOT}/bin/mpicc"; then
|
||||
MPICC=${MPIROOT}/bin/mpicc
|
||||
fi
|
||||
|
||||
if test -e "${MPIROOT}/bin/mpicxx"; then
|
||||
MPICXX=${MPIROOT}/bin/mpicxx
|
||||
fi
|
||||
fi
|
||||
|
||||
if test -z "$MPICC" -o -z "$MPICXX"; then
|
||||
MPIINC="${MPIINC} -I${MPIROOT}/include"
|
||||
FFLAGS="${FFLAGS} -I${MPIROOT}/include"
|
||||
AC_MSG_CHECKING([for name of MPI lib ])
|
||||
if test -e ${MPIROOT}/lib/libmpi.a; then
|
||||
MPILIB="-L${MPIROOT}/lib -lmpi"
|
||||
elif test -e ${MPIROOT}/lib/libmpi.so; then
|
||||
MPILIB="-L${MPIROOT}/lib -lmpi"
|
||||
elif test -e ${MPIROOT}/lib/libmpich.a; then
|
||||
MPILIB="-L${MPIROOT}/lib -lmpich"
|
||||
elif test -e ${MPIROOT}/lib/libmpich.so; then
|
||||
MPILIB="-L${MPIROOT}/lib -lmpich"
|
||||
else
|
||||
AC_MSG_RESULT([not found])
|
||||
exit 1
|
||||
fi
|
||||
AC_MSG_RESULT([${MPILIB}])
|
||||
fi
|
||||
|
||||
if test -n "$MPICC"; then
|
||||
CC=${MPICC}
|
||||
fi
|
||||
|
||||
if test -n "$MPICXX"; then
|
||||
CXX=${MPICXX}
|
||||
fi
|
||||
fi
|
||||
|
||||
MTARGET="libpH5Part.a"
|
||||
TTARGET="H5PartTestP H5PartAndreasTest Bench"
|
||||
TTARGET="${TTARGET} H5BlockTestAttributes"
|
||||
TTARGET="${TTARGET} H5BlockParTestScalarField"
|
||||
|
||||
# parallel + fortran
|
||||
if test "X$USE_FORTRAN" = "Xyes"; then
|
||||
AC_PATH_PROGS([MPIFC], [mpxlf_r mpif90], [], [$PATH])
|
||||
|
||||
if test -z "${MPIFC}" ; then
|
||||
if test -e "${MPIROOT}/bin/mpif90"; then
|
||||
MPIFC=${MPIROOT}/bin/mpif90
|
||||
fi
|
||||
fi
|
||||
|
||||
# if MPIFC empty
|
||||
if test ! -n "$MPIFC"; then
|
||||
AC_MSG_CHECKING([ No MPIFC detected. Setting MPIFC to FC.])
|
||||
MPIFC=$FC
|
||||
AC_MSG_RESULT([MPIFC = $MPIFC])
|
||||
fi
|
||||
|
||||
if test -n "$MPIFC"; then
|
||||
FC=${MPIFC}
|
||||
fi
|
||||
|
||||
MTARGET="${MTARGET} libpH5PartF.a"
|
||||
TTARGET="${TTARGET} H5testFpar"
|
||||
TTARGET="${TTARGET} H5BlockParTestScalarFieldF"
|
||||
fi
|
||||
|
||||
if test "X$r" = "Xno"; then
|
||||
AC_MSG_ERROR([ParMETIS])
|
||||
exit 1
|
||||
fi
|
||||
fi
|
||||
else # --enable-parallel=no
|
||||
AC_MSG_RESULT([no])
|
||||
|
||||
MTARGET="libH5Part.a"
|
||||
TTARGET="H5PartTest H5test"
|
||||
TTARGET="${TTARGET} H5BlockTestAttributes"
|
||||
|
||||
if test "X$USE_FORTRAN" = "Xyes"; then
|
||||
MTARGET="${MTARGET} libH5PartF.a"
|
||||
TTARGET="${TTARGET} H5testF"
|
||||
TTARGET="${TTARGET} H5BlockTestAttributesF"
|
||||
fi
|
||||
fi
|
||||
|
||||
AC_MSG_CHECKING([wheter tools are enabled])
|
||||
if test "X$USE_TOOLS" = "Xyes"; then
|
||||
AC_MSG_RESULT([yes])
|
||||
BUILD_TOOLS="h5pAttrib h5pToGNUplot h5ToVtk# homdynToH5p"
|
||||
else
|
||||
AC_MSG_RESULT([no])
|
||||
fi
|
||||
|
||||
###############################################################################
|
||||
# LIBRARY PATHS
|
||||
if test -n "${HDF5_PREFIX}" ; then
|
||||
AM_CPPFLAGS="$AM_CPPFLAGS -I$HDF5_PREFIX/include"
|
||||
AM_LDFLAGS="$AM_LDFLAGS -L$HDF5_PREFIX/lib"
|
||||
fi
|
||||
AC_CHECK_LIB([z], [compress2])
|
||||
AC_CHECK_LIB([hdf5], [H5open])
|
||||
AS_IF([test "x$ac_cv_lib_hdf5_H5open" != xyes],
|
||||
[AC_MSG_ERROR([Cannot compile and link a HDF5 program]);
|
||||
exit 1])
|
||||
######################### PATH CHECKING & SETTING #############################
|
||||
###############################################################################
|
||||
|
||||
|
||||
AC_MSG_CHECKING([for lustre API ])
|
||||
AC_MSG_CHECKING([for HDF5 root ])
|
||||
AC_MSG_RESULT([])
|
||||
if test -n "${LUSTREPATH}"; then
|
||||
P=${LUSTREPATH}
|
||||
elif test -n "${LUSTREROOT}" ; then
|
||||
P=${LUSTREROOT}
|
||||
elif test -n "${LUSTREHOME}" ; then
|
||||
P=${LUSTREHOME}
|
||||
elif test -n "${LUSTRE_DIR}" ; then
|
||||
P=${LUSTRE_DIR}
|
||||
if test -n "${HDF5ROOT}"; then
|
||||
P=${HDF5ROOT}
|
||||
elif test -n "${HDF5HOME}" ; then
|
||||
P=${HDF5HOME}
|
||||
elif test -n "${HDF5PATH}" ; then
|
||||
P=${HDF5PATH}
|
||||
else
|
||||
P=''
|
||||
P="$P /usr"
|
||||
P="$P /usr/local"
|
||||
P="$P /usr/local/lustre"
|
||||
P="$P /opt/lustre"
|
||||
P="$P /usr/local/hdf5"
|
||||
P="$P /usr/local/packages/hdf5"
|
||||
P="$P /apps/hdf5"
|
||||
|
||||
if test "X$USE_PARALLEL" = "Xyes"; then
|
||||
P="$P /usr/local/phdf5"
|
||||
P="$P /usr/local/hdf5/hdf5_par"
|
||||
if test "X$USE_64" = "Xyes"; then
|
||||
P="$P /usr/common/usg/hdf5/64/default/parallel"
|
||||
else
|
||||
P="$P /usr/common/usg/hdf5/32/default/parallel"
|
||||
fi
|
||||
else
|
||||
P="$P /usr/local/hdf5/hdf5_serial"
|
||||
if test "X$USE_64" = "Xyes"; then
|
||||
P="$P /usr/common/usg/hdf5/64/default/serial"
|
||||
else
|
||||
P="$P /usr/common/usg/hdf5/32/default/serial"
|
||||
fi
|
||||
fi
|
||||
fi
|
||||
PATH_Search LUSTREROOT "$P" usr/include/lustre/liblustreapi.h
|
||||
if test -z "$LUSTREROOT"; then
|
||||
AC_MSG_WARN([Couldn't locate the lustre API... building without support for lustre striping!])
|
||||
else
|
||||
CFLAGS="$CFLAGS -DH5_USE_LUSTRE"
|
||||
AM_CPPFLAGS="$AM_CPPFLAGS -I$LUSTREROOT/usr/include"
|
||||
AM_LDFLAGS="$AM_LDFLAGS -L$LUSTREROOT/usr/lib"
|
||||
LIBS="$LIBS -llustreapi"
|
||||
PATH_Search HDF5ROOT "$P" include/hdf5.h
|
||||
if test -z "$HDF5ROOT"; then
|
||||
AC_MSG_ERROR([Cannot determine HDF5 root!!!])
|
||||
exit 1
|
||||
fi
|
||||
|
||||
AC_MSG_CHECKING([if we need to link to libsz ])
|
||||
if test -n "$HDF5ROOT"; then
|
||||
if test -f $HDF5ROOT/lib/libsz.a; then
|
||||
AC_MSG_RESULT([yes])
|
||||
SZLIB="-L$HDF5ROOT/lib/ -lsz"
|
||||
else
|
||||
AC_MSG_RESULT([no])
|
||||
SZLIB=""
|
||||
fi
|
||||
fi
|
||||
|
||||
AC_MSG_CHECKING([for static zlib root ])
|
||||
AC_MSG_RESULT([ ])
|
||||
PATH_Search ZLIBROOT '/apps/zlib' lib/libz.a
|
||||
if test -n "$ZLIBROOT"; then
|
||||
LDFLAGS="$LDFLAGS -L$ZLIBROOT/lib"
|
||||
fi
|
||||
|
||||
LIBS="$LIBS -lm"
|
||||
|
||||
###############################################################################
|
||||
# TOOLS
|
||||
AC_MSG_CHECKING([if we have to compile the VTK to H5hut grid converter])
|
||||
if test "X$ENABLE_VTKCONVERTER" = "Xyes"; then
|
||||
AC_MSG_RESULT([yes])
|
||||
# :TODO: add test whether we can compile/link a prog with vtk
|
||||
#################### MISC SETTINGS - path, flags, etc #########################
|
||||
###############################################################################
|
||||
|
||||
H5P_LIB_LOC=`pwd`/src
|
||||
|
||||
###############################################################################
|
||||
################# A SIMPLE WORK AROUND TO USE ENV. VARS #######################
|
||||
###############################################################################
|
||||
|
||||
#if there was an external input for the variable...
|
||||
if test -n "$SAVE_CC"; then
|
||||
CC=$SAVE_CC
|
||||
fi
|
||||
|
||||
if test -n "$SAVE_CXX"; then
|
||||
CXX=$SAVE_CXX
|
||||
fi
|
||||
|
||||
if test -n "$SAVE_FC"; then
|
||||
FC=$SAVE_FC
|
||||
fi
|
||||
|
||||
if test -n "$SAVE_MPICC"; then
|
||||
MPICC=$SAVE_MPICC
|
||||
fi
|
||||
|
||||
if test -n "$SAVE_MPICXX"; then
|
||||
MPICXX=$SAVE_MPICXX
|
||||
fi
|
||||
|
||||
if test -n "$SAVE_MPIFC"; then
|
||||
MPIFC=$SAVE_MPIFC
|
||||
fi
|
||||
|
||||
if test -n "$SAVE_MPILIB"; then
|
||||
MPILIB=$SAVE_MPILIB
|
||||
fi
|
||||
|
||||
if test -n "$SAVE_MPIINC"; then
|
||||
MPIINC=$SAVE_MPIINC
|
||||
fi
|
||||
|
||||
if test -n "$SAVE_CFLAGS"; then
|
||||
CFLAGS="$SAVE_CFLAGS ${CFLAGS}"
|
||||
fi
|
||||
|
||||
if test -n "$SAVE_FFLAGS"; then
|
||||
FFLAGS=$SAVE_FFLAGS
|
||||
fi
|
||||
|
||||
if test -n "$SAVE_MPIROOT"; then
|
||||
MPIROOT=$SAVE_MPIROOT
|
||||
fi
|
||||
|
||||
if test -n "$SAVE_HDF5ROOT"; then
|
||||
HDF5ROOT=$SAVE_HDF5ROOT
|
||||
fi
|
||||
|
||||
if test -n "$SAVE_LDFLAGS"; then
|
||||
LDFLAGS=$SAVE_LDFLAGS
|
||||
fi
|
||||
|
||||
if test -n "$MPICXX"; then
|
||||
TOOLS_CXX=$MPICXX
|
||||
TOOLS_H5PART_LIB="-lpH5Part"
|
||||
TOOLS_HDFLIB="-L$HDF5ROOT/lib -lhdf5"
|
||||
else
|
||||
AC_MSG_RESULT([no])
|
||||
TOOLS_CXX=$CXX
|
||||
TOOLS_H5PART_LIB="-lH5Part"
|
||||
TOOLS_HDFLIB="-L$HDF5ROOT/lib -lhdf5"
|
||||
fi
|
||||
|
||||
###############################################################################
|
||||
# EXPORTING VARIABLES & CREATING OUTPUT FILES
|
||||
AC_SUBST(HDF5_PREFIX)
|
||||
############## EXPORTING VARIABLES & CREATING OUTPUT FILES ####################
|
||||
###############################################################################
|
||||
# AC_SUBST (variable, [value])
|
||||
# Create an output variable from a shell variable.
|
||||
# Make AC_OUTPUT substitute the variable variable into output files (typically one or more `Makefile's).
|
||||
# This means that AC_OUTPUT will replace instances of `@variable@' in input files with the value that
|
||||
# the shell variable variable has when AC_OUTPUT is called.
|
||||
# This value of variable should not contain literal newlines.
|
||||
# If value is given, in addition assign it to variable.
|
||||
AC_SUBST(MPIROOT)
|
||||
AC_SUBST(HDF5ROOT)
|
||||
AC_SUBST(MPIINC)
|
||||
AC_SUBST(MPILIB)
|
||||
AC_SUBST(MPICC)
|
||||
AC_SUBST(MPICXX)
|
||||
AC_SUBST(MPIFC)
|
||||
AC_SUBST(MTARGET)
|
||||
AC_SUBST(TTARGET)
|
||||
AC_SUBST(SZLIB)
|
||||
AC_SUBST(CFLAGS)
|
||||
AC_SUBST(FFLAGS)
|
||||
AC_SUBST(AM_CPPFLAGS)
|
||||
AC_SUBST(AM_LDFLAGS)
|
||||
AC_SUBST(STDCXX)
|
||||
AC_SUBST(H5P_LIB_LOC)
|
||||
AC_SUBST(UNDERSCORE_H)
|
||||
AC_SUBST(BUILD_TOOLS)
|
||||
AC_SUBST(LDFLAGS)
|
||||
AC_SUBST(TOOLS_CXX)
|
||||
AC_SUBST(TOOLS_H5PART_LIB)
|
||||
AC_SUBST(TOOLS_HDFLIB)
|
||||
|
||||
# Make AC_OUTPUT create each `file' by copying an input file (by default `file.in'),
|
||||
# substituting the output variable values.
|
||||
AC_CONFIG_FILES([
|
||||
Makefile
|
||||
src/Makefile
|
||||
src/h5core/Makefile
|
||||
src/include/Makefile
|
||||
src/include/h5core/Makefile
|
||||
src/C/Makefile
|
||||
src/Fortran/Makefile
|
||||
test/Makefile
|
||||
doc/Makefile
|
||||
tools/Makefile
|
||||
tools/h5hutcc
|
||||
tools/vtk2h5grid/Makefile
|
||||
Makefile
|
||||
doc/Makefile
|
||||
src/Makefile
|
||||
test/Makefile
|
||||
tools/Makefile
|
||||
])
|
||||
|
||||
AC_OUTPUT
|
||||
|
||||
###############################################################################
|
||||
# PRINTING SUMMARY
|
||||
########################## PRINTING SUMMARY ###################################
|
||||
###############################################################################
|
||||
AC_MSG_RESULT([ ])
|
||||
AC_MSG_RESULT([Summary:])
|
||||
AC_MSG_RESULT([ ])
|
||||
AC_MSG_RESULT([Host OS: $host_os])
|
||||
AC_MSG_RESULT([Host CPU: $host_cpu])
|
||||
AC_MSG_RESULT([Host vendor: $host_vendor])
|
||||
AC_MSG_RESULT([Build libraries: $MTARGET])
|
||||
AC_MSG_RESULT([Build test programs: $TTARGET])
|
||||
AC_MSG_RESULT([Build tools: $BUILD_TOOLS])
|
||||
AC_MSG_RESULT([CC = $CC])
|
||||
AC_MSG_RESULT([CXX = $CXX])
|
||||
AC_MSG_RESULT([FC = $FC])
|
||||
AC_MSG_RESULT([MPICC = $MPICC])
|
||||
AC_MSG_RESULT([MPICXX = $MPICXX])
|
||||
AC_MSG_RESULT([MPIFC = $MPIFC])
|
||||
AC_MSG_RESULT([CFLAGS = $CFLAGS])
|
||||
AC_MSG_RESULT([FFLAGS = $FFLAGS])
|
||||
AC_MSG_RESULT([AM_CPPFLAGS = $AM_CPPFLAGS])
|
||||
AC_MSG_RESULT([AM_LDFLAGS = $AM_LDFLAGS])
|
||||
AC_MSG_RESULT([LIBS = $LIBS])
|
||||
AC_MSG_RESULT([HDF5_PREFIX = $HDF5_PREFIX])
|
||||
AC_MSG_RESULT([LUSTREROOT = $LUSTREROOT])
|
||||
AC_MSG_RESULT([ ])
|
||||
AC_MSG_RESULT([MPILIB = $MPILIB])
|
||||
AC_MSG_RESULT([MPIINC = $MPIINC])
|
||||
AC_MSG_RESULT([MPIROOT = $MPIROOT])
|
||||
AC_MSG_RESULT([HDF5ROOT = $HDF5ROOT])
|
||||
AC_MSG_RESULT([LDFLAGS = $LDFLAGS])
|
||||
AC_MSG_RESULT([ ])
|
||||
@@ -0,0 +1,529 @@
|
||||
#! /bin/sh
|
||||
# depcomp - compile a program generating dependencies as side-effects
|
||||
|
||||
scriptversion=2005-02-09.22
|
||||
|
||||
# Copyright (C) 1999, 2000, 2003, 2004, 2005 Free Software Foundation, Inc.
|
||||
|
||||
# This program is free software; you can redistribute it and/or modify
|
||||
# it under the terms of the GNU General Public License as published by
|
||||
# the Free Software Foundation; either version 2, or (at your option)
|
||||
# any later version.
|
||||
|
||||
# This program is distributed in the hope that it will be useful,
|
||||
# but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
# GNU General Public License for more details.
|
||||
|
||||
# You should have received a copy of the GNU General Public License
|
||||
# along with this program; if not, write to the Free Software
|
||||
# Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA
|
||||
# 02111-1307, USA.
|
||||
|
||||
# As a special exception to the GNU General Public License, if you
|
||||
# distribute this file as part of a program that contains a
|
||||
# configuration script generated by Autoconf, you may include it under
|
||||
# the same distribution terms that you use for the rest of that program.
|
||||
|
||||
# Originally written by Alexandre Oliva <oliva@dcc.unicamp.br>.
|
||||
|
||||
case $1 in
|
||||
'')
|
||||
echo "$0: No command. Try \`$0 --help' for more information." 1>&2
|
||||
exit 1;
|
||||
;;
|
||||
-h | --h*)
|
||||
cat <<\EOF
|
||||
Usage: depcomp [--help] [--version] PROGRAM [ARGS]
|
||||
|
||||
Run PROGRAMS ARGS to compile a file, generating dependencies
|
||||
as side-effects.
|
||||
|
||||
Environment variables:
|
||||
depmode Dependency tracking mode.
|
||||
source Source file read by `PROGRAMS ARGS'.
|
||||
object Object file output by `PROGRAMS ARGS'.
|
||||
DEPDIR directory where to store dependencies.
|
||||
depfile Dependency file to output.
|
||||
tmpdepfile Temporary file to use when outputing dependencies.
|
||||
libtool Whether libtool is used (yes/no).
|
||||
|
||||
Report bugs to <bug-automake@gnu.org>.
|
||||
EOF
|
||||
exit $?
|
||||
;;
|
||||
-v | --v*)
|
||||
echo "depcomp $scriptversion"
|
||||
exit $?
|
||||
;;
|
||||
esac
|
||||
|
||||
if test -z "$depmode" || test -z "$source" || test -z "$object"; then
|
||||
echo "depcomp: Variables source, object and depmode must be set" 1>&2
|
||||
exit 1
|
||||
fi
|
||||
|
||||
# Dependencies for sub/bar.o or sub/bar.obj go into sub/.deps/bar.Po.
|
||||
depfile=${depfile-`echo "$object" |
|
||||
sed 's|[^\\/]*$|'${DEPDIR-.deps}'/&|;s|\.\([^.]*\)$|.P\1|;s|Pobj$|Po|'`}
|
||||
tmpdepfile=${tmpdepfile-`echo "$depfile" | sed 's/\.\([^.]*\)$/.T\1/'`}
|
||||
|
||||
rm -f "$tmpdepfile"
|
||||
|
||||
# Some modes work just like other modes, but use different flags. We
|
||||
# parameterize here, but still list the modes in the big case below,
|
||||
# to make depend.m4 easier to write. Note that we *cannot* use a case
|
||||
# here, because this file can only contain one case statement.
|
||||
if test "$depmode" = hp; then
|
||||
# HP compiler uses -M and no extra arg.
|
||||
gccflag=-M
|
||||
depmode=gcc
|
||||
fi
|
||||
|
||||
if test "$depmode" = dashXmstdout; then
|
||||
# This is just like dashmstdout with a different argument.
|
||||
dashmflag=-xM
|
||||
depmode=dashmstdout
|
||||
fi
|
||||
|
||||
case "$depmode" in
|
||||
gcc3)
|
||||
## gcc 3 implements dependency tracking that does exactly what
|
||||
## we want. Yay! Note: for some reason libtool 1.4 doesn't like
|
||||
## it if -MD -MP comes after the -MF stuff. Hmm.
|
||||
"$@" -MT "$object" -MD -MP -MF "$tmpdepfile"
|
||||
stat=$?
|
||||
if test $stat -eq 0; then :
|
||||
else
|
||||
rm -f "$tmpdepfile"
|
||||
exit $stat
|
||||
fi
|
||||
mv "$tmpdepfile" "$depfile"
|
||||
;;
|
||||
|
||||
gcc)
|
||||
## There are various ways to get dependency output from gcc. Here's
|
||||
## why we pick this rather obscure method:
|
||||
## - Don't want to use -MD because we'd like the dependencies to end
|
||||
## up in a subdir. Having to rename by hand is ugly.
|
||||
## (We might end up doing this anyway to support other compilers.)
|
||||
## - The DEPENDENCIES_OUTPUT environment variable makes gcc act like
|
||||
## -MM, not -M (despite what the docs say).
|
||||
## - Using -M directly means running the compiler twice (even worse
|
||||
## than renaming).
|
||||
if test -z "$gccflag"; then
|
||||
gccflag=-MD,
|
||||
fi
|
||||
"$@" -Wp,"$gccflag$tmpdepfile"
|
||||
stat=$?
|
||||
if test $stat -eq 0; then :
|
||||
else
|
||||
rm -f "$tmpdepfile"
|
||||
exit $stat
|
||||
fi
|
||||
rm -f "$depfile"
|
||||
echo "$object : \\" > "$depfile"
|
||||
alpha=ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz
|
||||
## The second -e expression handles DOS-style file names with drive letters.
|
||||
sed -e 's/^[^:]*: / /' \
|
||||
-e 's/^['$alpha']:\/[^:]*: / /' < "$tmpdepfile" >> "$depfile"
|
||||
## This next piece of magic avoids the `deleted header file' problem.
|
||||
## The problem is that when a header file which appears in a .P file
|
||||
## is deleted, the dependency causes make to die (because there is
|
||||
## typically no way to rebuild the header). We avoid this by adding
|
||||
## dummy dependencies for each header file. Too bad gcc doesn't do
|
||||
## this for us directly.
|
||||
tr ' ' '
|
||||
' < "$tmpdepfile" |
|
||||
## Some versions of gcc put a space before the `:'. On the theory
|
||||
## that the space means something, we add a space to the output as
|
||||
## well.
|
||||
## Some versions of the HPUX 10.20 sed can't process this invocation
|
||||
## correctly. Breaking it into two sed invocations is a workaround.
|
||||
sed -e 's/^\\$//' -e '/^$/d' -e '/:$/d' | sed -e 's/$/ :/' >> "$depfile"
|
||||
rm -f "$tmpdepfile"
|
||||
;;
|
||||
|
||||
hp)
|
||||
# This case exists only to let depend.m4 do its work. It works by
|
||||
# looking at the text of this script. This case will never be run,
|
||||
# since it is checked for above.
|
||||
exit 1
|
||||
;;
|
||||
|
||||
sgi)
|
||||
if test "$libtool" = yes; then
|
||||
"$@" "-Wp,-MDupdate,$tmpdepfile"
|
||||
else
|
||||
"$@" -MDupdate "$tmpdepfile"
|
||||
fi
|
||||
stat=$?
|
||||
if test $stat -eq 0; then :
|
||||
else
|
||||
rm -f "$tmpdepfile"
|
||||
exit $stat
|
||||
fi
|
||||
rm -f "$depfile"
|
||||
|
||||
if test -f "$tmpdepfile"; then # yes, the sourcefile depend on other files
|
||||
echo "$object : \\" > "$depfile"
|
||||
|
||||
# Clip off the initial element (the dependent). Don't try to be
|
||||
# clever and replace this with sed code, as IRIX sed won't handle
|
||||
# lines with more than a fixed number of characters (4096 in
|
||||
# IRIX 6.2 sed, 8192 in IRIX 6.5). We also remove comment lines;
|
||||
# the IRIX cc adds comments like `#:fec' to the end of the
|
||||
# dependency line.
|
||||
tr ' ' '
|
||||
' < "$tmpdepfile" \
|
||||
| sed -e 's/^.*\.o://' -e 's/#.*$//' -e '/^$/ d' | \
|
||||
tr '
|
||||
' ' ' >> $depfile
|
||||
echo >> $depfile
|
||||
|
||||
# The second pass generates a dummy entry for each header file.
|
||||
tr ' ' '
|
||||
' < "$tmpdepfile" \
|
||||
| sed -e 's/^.*\.o://' -e 's/#.*$//' -e '/^$/ d' -e 's/$/:/' \
|
||||
>> $depfile
|
||||
else
|
||||
# The sourcefile does not contain any dependencies, so just
|
||||
# store a dummy comment line, to avoid errors with the Makefile
|
||||
# "include basename.Plo" scheme.
|
||||
echo "#dummy" > "$depfile"
|
||||
fi
|
||||
rm -f "$tmpdepfile"
|
||||
;;
|
||||
|
||||
aix)
|
||||
# The C for AIX Compiler uses -M and outputs the dependencies
|
||||
# in a .u file. In older versions, this file always lives in the
|
||||
# current directory. Also, the AIX compiler puts `$object:' at the
|
||||
# start of each line; $object doesn't have directory information.
|
||||
# Version 6 uses the directory in both cases.
|
||||
stripped=`echo "$object" | sed 's/\(.*\)\..*$/\1/'`
|
||||
tmpdepfile="$stripped.u"
|
||||
if test "$libtool" = yes; then
|
||||
"$@" -Wc,-M
|
||||
else
|
||||
"$@" -M
|
||||
fi
|
||||
stat=$?
|
||||
|
||||
if test -f "$tmpdepfile"; then :
|
||||
else
|
||||
stripped=`echo "$stripped" | sed 's,^.*/,,'`
|
||||
tmpdepfile="$stripped.u"
|
||||
fi
|
||||
|
||||
if test $stat -eq 0; then :
|
||||
else
|
||||
rm -f "$tmpdepfile"
|
||||
exit $stat
|
||||
fi
|
||||
|
||||
if test -f "$tmpdepfile"; then
|
||||
outname="$stripped.o"
|
||||
# Each line is of the form `foo.o: dependent.h'.
|
||||
# Do two passes, one to just change these to
|
||||
# `$object: dependent.h' and one to simply `dependent.h:'.
|
||||
sed -e "s,^$outname:,$object :," < "$tmpdepfile" > "$depfile"
|
||||
sed -e "s,^$outname: \(.*\)$,\1:," < "$tmpdepfile" >> "$depfile"
|
||||
else
|
||||
# The sourcefile does not contain any dependencies, so just
|
||||
# store a dummy comment line, to avoid errors with the Makefile
|
||||
# "include basename.Plo" scheme.
|
||||
echo "#dummy" > "$depfile"
|
||||
fi
|
||||
rm -f "$tmpdepfile"
|
||||
;;
|
||||
|
||||
icc)
|
||||
# Intel's C compiler understands `-MD -MF file'. However on
|
||||
# icc -MD -MF foo.d -c -o sub/foo.o sub/foo.c
|
||||
# ICC 7.0 will fill foo.d with something like
|
||||
# foo.o: sub/foo.c
|
||||
# foo.o: sub/foo.h
|
||||
# which is wrong. We want:
|
||||
# sub/foo.o: sub/foo.c
|
||||
# sub/foo.o: sub/foo.h
|
||||
# sub/foo.c:
|
||||
# sub/foo.h:
|
||||
# ICC 7.1 will output
|
||||
# foo.o: sub/foo.c sub/foo.h
|
||||
# and will wrap long lines using \ :
|
||||
# foo.o: sub/foo.c ... \
|
||||
# sub/foo.h ... \
|
||||
# ...
|
||||
|
||||
"$@" -MD -MF "$tmpdepfile"
|
||||
stat=$?
|
||||
if test $stat -eq 0; then :
|
||||
else
|
||||
rm -f "$tmpdepfile"
|
||||
exit $stat
|
||||
fi
|
||||
rm -f "$depfile"
|
||||
# Each line is of the form `foo.o: dependent.h',
|
||||
# or `foo.o: dep1.h dep2.h \', or ` dep3.h dep4.h \'.
|
||||
# Do two passes, one to just change these to
|
||||
# `$object: dependent.h' and one to simply `dependent.h:'.
|
||||
sed "s,^[^:]*:,$object :," < "$tmpdepfile" > "$depfile"
|
||||
# Some versions of the HPUX 10.20 sed can't process this invocation
|
||||
# correctly. Breaking it into two sed invocations is a workaround.
|
||||
sed 's,^[^:]*: \(.*\)$,\1,;s/^\\$//;/^$/d;/:$/d' < "$tmpdepfile" |
|
||||
sed -e 's/$/ :/' >> "$depfile"
|
||||
rm -f "$tmpdepfile"
|
||||
;;
|
||||
|
||||
tru64)
|
||||
# The Tru64 compiler uses -MD to generate dependencies as a side
|
||||
# effect. `cc -MD -o foo.o ...' puts the dependencies into `foo.o.d'.
|
||||
# At least on Alpha/Redhat 6.1, Compaq CCC V6.2-504 seems to put
|
||||
# dependencies in `foo.d' instead, so we check for that too.
|
||||
# Subdirectories are respected.
|
||||
dir=`echo "$object" | sed -e 's|/[^/]*$|/|'`
|
||||
test "x$dir" = "x$object" && dir=
|
||||
base=`echo "$object" | sed -e 's|^.*/||' -e 's/\.o$//' -e 's/\.lo$//'`
|
||||
|
||||
if test "$libtool" = yes; then
|
||||
# With Tru64 cc, shared objects can also be used to make a
|
||||
# static library. This mecanism is used in libtool 1.4 series to
|
||||
# handle both shared and static libraries in a single compilation.
|
||||
# With libtool 1.4, dependencies were output in $dir.libs/$base.lo.d.
|
||||
#
|
||||
# With libtool 1.5 this exception was removed, and libtool now
|
||||
# generates 2 separate objects for the 2 libraries. These two
|
||||
# compilations output dependencies in in $dir.libs/$base.o.d and
|
||||
# in $dir$base.o.d. We have to check for both files, because
|
||||
# one of the two compilations can be disabled. We should prefer
|
||||
# $dir$base.o.d over $dir.libs/$base.o.d because the latter is
|
||||
# automatically cleaned when .libs/ is deleted, while ignoring
|
||||
# the former would cause a distcleancheck panic.
|
||||
tmpdepfile1=$dir.libs/$base.lo.d # libtool 1.4
|
||||
tmpdepfile2=$dir$base.o.d # libtool 1.5
|
||||
tmpdepfile3=$dir.libs/$base.o.d # libtool 1.5
|
||||
tmpdepfile4=$dir.libs/$base.d # Compaq CCC V6.2-504
|
||||
"$@" -Wc,-MD
|
||||
else
|
||||
tmpdepfile1=$dir$base.o.d
|
||||
tmpdepfile2=$dir$base.d
|
||||
tmpdepfile3=$dir$base.d
|
||||
tmpdepfile4=$dir$base.d
|
||||
"$@" -MD
|
||||
fi
|
||||
|
||||
stat=$?
|
||||
if test $stat -eq 0; then :
|
||||
else
|
||||
rm -f "$tmpdepfile1" "$tmpdepfile2" "$tmpdepfile3" "$tmpdepfile4"
|
||||
exit $stat
|
||||
fi
|
||||
|
||||
for tmpdepfile in "$tmpdepfile1" "$tmpdepfile2" "$tmpdepfile3" "$tmpdepfile4"
|
||||
do
|
||||
test -f "$tmpdepfile" && break
|
||||
done
|
||||
if test -f "$tmpdepfile"; then
|
||||
sed -e "s,^.*\.[a-z]*:,$object:," < "$tmpdepfile" > "$depfile"
|
||||
# That's a tab and a space in the [].
|
||||
sed -e 's,^.*\.[a-z]*:[ ]*,,' -e 's,$,:,' < "$tmpdepfile" >> "$depfile"
|
||||
else
|
||||
echo "#dummy" > "$depfile"
|
||||
fi
|
||||
rm -f "$tmpdepfile"
|
||||
;;
|
||||
|
||||
#nosideeffect)
|
||||
# This comment above is used by automake to tell side-effect
|
||||
# dependency tracking mechanisms from slower ones.
|
||||
|
||||
dashmstdout)
|
||||
# Important note: in order to support this mode, a compiler *must*
|
||||
# always write the preprocessed file to stdout, regardless of -o.
|
||||
"$@" || exit $?
|
||||
|
||||
# Remove the call to Libtool.
|
||||
if test "$libtool" = yes; then
|
||||
while test $1 != '--mode=compile'; do
|
||||
shift
|
||||
done
|
||||
shift
|
||||
fi
|
||||
|
||||
# Remove `-o $object'.
|
||||
IFS=" "
|
||||
for arg
|
||||
do
|
||||
case $arg in
|
||||
-o)
|
||||
shift
|
||||
;;
|
||||
$object)
|
||||
shift
|
||||
;;
|
||||
*)
|
||||
set fnord "$@" "$arg"
|
||||
shift # fnord
|
||||
shift # $arg
|
||||
;;
|
||||
esac
|
||||
done
|
||||
|
||||
test -z "$dashmflag" && dashmflag=-M
|
||||
# Require at least two characters before searching for `:'
|
||||
# in the target name. This is to cope with DOS-style filenames:
|
||||
# a dependency such as `c:/foo/bar' could be seen as target `c' otherwise.
|
||||
"$@" $dashmflag |
|
||||
sed 's:^[ ]*[^: ][^:][^:]*\:[ ]*:'"$object"'\: :' > "$tmpdepfile"
|
||||
rm -f "$depfile"
|
||||
cat < "$tmpdepfile" > "$depfile"
|
||||
tr ' ' '
|
||||
' < "$tmpdepfile" | \
|
||||
## Some versions of the HPUX 10.20 sed can't process this invocation
|
||||
## correctly. Breaking it into two sed invocations is a workaround.
|
||||
sed -e 's/^\\$//' -e '/^$/d' -e '/:$/d' | sed -e 's/$/ :/' >> "$depfile"
|
||||
rm -f "$tmpdepfile"
|
||||
;;
|
||||
|
||||
dashXmstdout)
|
||||
# This case only exists to satisfy depend.m4. It is never actually
|
||||
# run, as this mode is specially recognized in the preamble.
|
||||
exit 1
|
||||
;;
|
||||
|
||||
makedepend)
|
||||
"$@" || exit $?
|
||||
# Remove any Libtool call
|
||||
if test "$libtool" = yes; then
|
||||
while test $1 != '--mode=compile'; do
|
||||
shift
|
||||
done
|
||||
shift
|
||||
fi
|
||||
# X makedepend
|
||||
shift
|
||||
cleared=no
|
||||
for arg in "$@"; do
|
||||
case $cleared in
|
||||
no)
|
||||
set ""; shift
|
||||
cleared=yes ;;
|
||||
esac
|
||||
case "$arg" in
|
||||
-D*|-I*)
|
||||
set fnord "$@" "$arg"; shift ;;
|
||||
# Strip any option that makedepend may not understand. Remove
|
||||
# the object too, otherwise makedepend will parse it as a source file.
|
||||
-*|$object)
|
||||
;;
|
||||
*)
|
||||
set fnord "$@" "$arg"; shift ;;
|
||||
esac
|
||||
done
|
||||
obj_suffix="`echo $object | sed 's/^.*\././'`"
|
||||
touch "$tmpdepfile"
|
||||
${MAKEDEPEND-makedepend} -o"$obj_suffix" -f"$tmpdepfile" "$@"
|
||||
rm -f "$depfile"
|
||||
cat < "$tmpdepfile" > "$depfile"
|
||||
sed '1,2d' "$tmpdepfile" | tr ' ' '
|
||||
' | \
|
||||
## Some versions of the HPUX 10.20 sed can't process this invocation
|
||||
## correctly. Breaking it into two sed invocations is a workaround.
|
||||
sed -e 's/^\\$//' -e '/^$/d' -e '/:$/d' | sed -e 's/$/ :/' >> "$depfile"
|
||||
rm -f "$tmpdepfile" "$tmpdepfile".bak
|
||||
;;
|
||||
|
||||
cpp)
|
||||
# Important note: in order to support this mode, a compiler *must*
|
||||
# always write the preprocessed file to stdout.
|
||||
"$@" || exit $?
|
||||
|
||||
# Remove the call to Libtool.
|
||||
if test "$libtool" = yes; then
|
||||
while test $1 != '--mode=compile'; do
|
||||
shift
|
||||
done
|
||||
shift
|
||||
fi
|
||||
|
||||
# Remove `-o $object'.
|
||||
IFS=" "
|
||||
for arg
|
||||
do
|
||||
case $arg in
|
||||
-o)
|
||||
shift
|
||||
;;
|
||||
$object)
|
||||
shift
|
||||
;;
|
||||
*)
|
||||
set fnord "$@" "$arg"
|
||||
shift # fnord
|
||||
shift # $arg
|
||||
;;
|
||||
esac
|
||||
done
|
||||
|
||||
"$@" -E |
|
||||
sed -n '/^# [0-9][0-9]* "\([^"]*\)".*/ s:: \1 \\:p' |
|
||||
sed '$ s: \\$::' > "$tmpdepfile"
|
||||
rm -f "$depfile"
|
||||
echo "$object : \\" > "$depfile"
|
||||
cat < "$tmpdepfile" >> "$depfile"
|
||||
sed < "$tmpdepfile" '/^$/d;s/^ //;s/ \\$//;s/$/ :/' >> "$depfile"
|
||||
rm -f "$tmpdepfile"
|
||||
;;
|
||||
|
||||
msvisualcpp)
|
||||
# Important note: in order to support this mode, a compiler *must*
|
||||
# always write the preprocessed file to stdout, regardless of -o,
|
||||
# because we must use -o when running libtool.
|
||||
"$@" || exit $?
|
||||
IFS=" "
|
||||
for arg
|
||||
do
|
||||
case "$arg" in
|
||||
"-Gm"|"/Gm"|"-Gi"|"/Gi"|"-ZI"|"/ZI")
|
||||
set fnord "$@"
|
||||
shift
|
||||
shift
|
||||
;;
|
||||
*)
|
||||
set fnord "$@" "$arg"
|
||||
shift
|
||||
shift
|
||||
;;
|
||||
esac
|
||||
done
|
||||
"$@" -E |
|
||||
sed -n '/^#line [0-9][0-9]* "\([^"]*\)"/ s::echo "`cygpath -u \\"\1\\"`":p' | sort | uniq > "$tmpdepfile"
|
||||
rm -f "$depfile"
|
||||
echo "$object : \\" > "$depfile"
|
||||
. "$tmpdepfile" | sed 's% %\\ %g' | sed -n '/^\(.*\)$/ s:: \1 \\:p' >> "$depfile"
|
||||
echo " " >> "$depfile"
|
||||
. "$tmpdepfile" | sed 's% %\\ %g' | sed -n '/^\(.*\)$/ s::\1\::p' >> "$depfile"
|
||||
rm -f "$tmpdepfile"
|
||||
;;
|
||||
|
||||
none)
|
||||
exec "$@"
|
||||
;;
|
||||
|
||||
*)
|
||||
echo "Unknown depmode $depmode" 1>&2
|
||||
exit 1
|
||||
;;
|
||||
esac
|
||||
|
||||
exit 0
|
||||
|
||||
# Local Variables:
|
||||
# mode: shell-script
|
||||
# sh-indentation: 2
|
||||
# eval: (add-hook 'write-file-hooks 'time-stamp)
|
||||
# time-stamp-start: "scriptversion="
|
||||
# time-stamp-format: "%:y-%02m-%02d.%02H"
|
||||
# time-stamp-end: "$"
|
||||
# End:
|
||||
+31
-33
@@ -3,8 +3,8 @@
|
||||
#---------------------------------------------------------------------------
|
||||
# Project related configuration options
|
||||
#---------------------------------------------------------------------------
|
||||
PROJECT_NAME = H5hut
|
||||
PROJECT_NUMBER = 1.9.9
|
||||
PROJECT_NAME = H5Part
|
||||
PROJECT_NUMBER = 1.3.3
|
||||
OUTPUT_DIRECTORY = ./ReferencePages
|
||||
CREATE_SUBDIRS = NO
|
||||
OUTPUT_LANGUAGE = English
|
||||
@@ -35,7 +35,7 @@ INHERIT_DOCS = YES
|
||||
SEPARATE_MEMBER_PAGES = NO
|
||||
TAB_SIZE = 8
|
||||
ALIASES =
|
||||
OPTIMIZE_OUTPUT_FOR_C = YES
|
||||
OPTIMIZE_OUTPUT_FOR_C = NO
|
||||
OPTIMIZE_OUTPUT_JAVA = NO
|
||||
BUILTIN_STL_SUPPORT = NO
|
||||
DISTRIBUTE_GROUP_DOC = NO
|
||||
@@ -57,7 +57,7 @@ CASE_SENSE_NAMES = YES
|
||||
HIDE_SCOPE_NAMES = NO
|
||||
SHOW_INCLUDE_FILES = NO
|
||||
INLINE_INFO = YES
|
||||
SORT_MEMBER_DOCS = NO
|
||||
SORT_MEMBER_DOCS = YES
|
||||
SORT_BRIEF_DOCS = NO
|
||||
SORT_BY_SCOPE_NAME = NO
|
||||
GENERATE_TODOLIST = YES
|
||||
@@ -67,7 +67,7 @@ GENERATE_DEPRECATEDLIST= YES
|
||||
ENABLED_SECTIONS =
|
||||
MAX_INITIALIZER_LINES = 30
|
||||
SHOW_USED_FILES = NO
|
||||
SHOW_DIRECTORIES = NO
|
||||
SHOW_DIRECTORIES = YES
|
||||
FILE_VERSION_FILTER =
|
||||
#---------------------------------------------------------------------------
|
||||
# configuration options related to warning and progress messages
|
||||
@@ -82,22 +82,20 @@ WARN_LOGFILE =
|
||||
#---------------------------------------------------------------------------
|
||||
# configuration options related to the input files
|
||||
#---------------------------------------------------------------------------
|
||||
INPUT += H5.dox
|
||||
INPUT += ../src/h5core/
|
||||
INPUT += ../src/C/
|
||||
INPUT += ../src/Fortran/
|
||||
FILE_PATTERNS =
|
||||
RECURSIVE = YES
|
||||
EXCLUDE =
|
||||
EXCLUDE_SYMLINKS = NO
|
||||
EXCLUDE_PATTERNS =
|
||||
EXAMPLE_PATH =
|
||||
EXAMPLE_PATTERNS = *
|
||||
EXAMPLE_RECURSIVE = NO
|
||||
IMAGE_PATH =
|
||||
INPUT_FILTER =
|
||||
FILTER_PATTERNS =
|
||||
FILTER_SOURCE_FILES = NO
|
||||
INPUT += ../src/H5Part.c
|
||||
INPUT += ../src/H5Block.c
|
||||
FILE_PATTERNS =
|
||||
RECURSIVE = YES
|
||||
EXCLUDE =
|
||||
EXCLUDE_SYMLINKS = NO
|
||||
EXCLUDE_PATTERNS =
|
||||
EXAMPLE_PATH =
|
||||
EXAMPLE_PATTERNS = *
|
||||
EXAMPLE_RECURSIVE = NO
|
||||
IMAGE_PATH =
|
||||
INPUT_FILTER =
|
||||
FILTER_PATTERNS =
|
||||
FILTER_SOURCE_FILES = NO
|
||||
#---------------------------------------------------------------------------
|
||||
# configuration options related to source browsing
|
||||
#---------------------------------------------------------------------------
|
||||
@@ -120,8 +118,8 @@ IGNORE_PREFIX =
|
||||
GENERATE_HTML = YES
|
||||
HTML_OUTPUT = .
|
||||
HTML_FILE_EXTENSION = .html
|
||||
HTML_HEADER =
|
||||
HTML_FOOTER =
|
||||
HTML_HEADER =
|
||||
HTML_FOOTER = doxyfooter
|
||||
HTML_STYLESHEET =
|
||||
HTML_ALIGN_MEMBERS = YES
|
||||
GENERATE_HTMLHELP = NO
|
||||
@@ -193,13 +191,13 @@ EXPAND_ONLY_PREDEF = NO
|
||||
SEARCH_INCLUDES = YES
|
||||
INCLUDE_PATH =
|
||||
INCLUDE_FILE_PATTERNS =
|
||||
PREDEFINED = PARALLEL_IO
|
||||
PREDEFINED =
|
||||
EXPAND_AS_DEFINED =
|
||||
SKIP_FUNCTION_MACROS = YES
|
||||
#---------------------------------------------------------------------------
|
||||
# Configuration::additions related to external references
|
||||
#---------------------------------------------------------------------------
|
||||
TAGFILES =
|
||||
TAGFILES = YES
|
||||
GENERATE_TAGFILE =
|
||||
ALLEXTERNALS = NO
|
||||
EXTERNAL_GROUPS = YES
|
||||
@@ -207,21 +205,21 @@ PERL_PATH = /usr/bin/perl
|
||||
#---------------------------------------------------------------------------
|
||||
# Configuration options related to the dot tool
|
||||
#---------------------------------------------------------------------------
|
||||
CLASS_DIAGRAMS = NO
|
||||
CLASS_DIAGRAMS = YES
|
||||
HIDE_UNDOC_RELATIONS = YES
|
||||
HAVE_DOT = NO
|
||||
CLASS_GRAPH = NO
|
||||
COLLABORATION_GRAPH = NO
|
||||
GROUP_GRAPHS = NO
|
||||
HAVE_DOT = YES
|
||||
CLASS_GRAPH = YES
|
||||
COLLABORATION_GRAPH = YES
|
||||
GROUP_GRAPHS = YES
|
||||
UML_LOOK = NO
|
||||
TEMPLATE_RELATIONS = NO
|
||||
INCLUDE_GRAPH = NO
|
||||
INCLUDED_BY_GRAPH = NO
|
||||
CALL_GRAPH = NO
|
||||
GRAPHICAL_HIERARCHY = NO
|
||||
DIRECTORY_GRAPH = NO
|
||||
GRAPHICAL_HIERARCHY = YES
|
||||
DIRECTORY_GRAPH = YES
|
||||
DOT_IMAGE_FORMAT = png
|
||||
DOT_PATH =
|
||||
DOT_PATH = /Applications/Graphviz.app/Contents/MacOS
|
||||
DOTFILE_DIRS =
|
||||
MAX_DOT_GRAPH_WIDTH = 1024
|
||||
MAX_DOT_GRAPH_HEIGHT = 1024
|
||||
|
||||
File diff suppressed because it is too large
Load Diff
@@ -1,77 +0,0 @@
|
||||
NumLevels: 2
|
||||
|
||||
NumVerticesOnLevel: 11 20 29
|
||||
|
||||
Vertices:
|
||||
1 0.0 0.0
|
||||
2 60.0 -70.0
|
||||
3 90.0 -10.0
|
||||
4 140.0 -70.0
|
||||
5 180.0 -10.0
|
||||
6 240.0 -60.0
|
||||
7 220.0 60.0
|
||||
8 140.0 90.0
|
||||
9 200.0 120.0
|
||||
10 130.0 150.0
|
||||
11 50.0 80.0
|
||||
12 115.0 40.0
|
||||
13 95.0 85.0
|
||||
14 70.0 35.0
|
||||
15 160.0 -40.0
|
||||
16 135.0 -10.0
|
||||
17 115.0 -40.0
|
||||
18 200.0 25.0
|
||||
19 180.0 75.0
|
||||
20 160.0 40.0
|
||||
|
||||
21 125.0 15.0
|
||||
22 112.5 -10.0
|
||||
23 102.5 15.0
|
||||
24 147.5 15.0
|
||||
25 137.5 40.0
|
||||
26 150.0 65.0
|
||||
27 127.5 65.0
|
||||
28 117.5 87.5
|
||||
29 105.0 62.5
|
||||
|
||||
NumElemsOnLevel: 12 24 36
|
||||
NumElems: 12 28 44
|
||||
|
||||
Elements:
|
||||
ID PID CID VertexIDs Adj Translation Tbl (dim num lvls - 1)
|
||||
1 -1 -1 1 2 3 2 11 -1 1
|
||||
2 -1 -1 2 3 4 3 -1 1 2
|
||||
3 -1 12 3 4 5 4 12 2 -1
|
||||
4 -1 -1 4 5 6 5 -1 3 3
|
||||
5 -1 -1 5 7 6 -1 4 6 4
|
||||
6 -1 17 8 5 7 5 7 12 -1
|
||||
7 -1 -1 8 9 7 -1 6 8 5
|
||||
8 -1 -1 10 8 9 7 -1 9 6
|
||||
9 -1 -1 11 10 8 8 10 -1 7
|
||||
10 -1 25 11 3 8 12 9 11 -1
|
||||
11 -1 -1 1 11 3 10 1 -1 8
|
||||
12 -1 21 3 8 5 6 3 10 -1
|
||||
13 3 -1 3 14 13 16 21 2 9
|
||||
14 3 -1 14 4 12 4 16 2 10
|
||||
15 3 -1 13 12 5 4 23 16 11
|
||||
16 3 -1 14 13 12 15 14 13 12
|
||||
17 6 -1 8 17 16 20 5 22 13
|
||||
18 6 -1 17 5 15 5 20 23 14
|
||||
19 6 -1 16 15 7 5 7 20 15
|
||||
20 6 -1 17 16 15 19 18 17 16
|
||||
21 12 -1 3 18 13 24 13 26 17
|
||||
22 12 -1 18 8 17 17 24 27 18
|
||||
23 12 -1 13 17 5 18 15 24 19
|
||||
24 12 -1 18 13 17 23 22 21 20
|
||||
25 10 -1 11 20 19 28 9 11 21
|
||||
26 10 -1 20 3 18 21 28 11 22
|
||||
27 10 -1 19 18 8 22 9 28 23
|
||||
28 10 -1 20 3 18 27 26 25 24
|
||||
|
||||
3,0 3,1 4,2 2,3 16,4
|
||||
|
||||
1 2 -1 3 4
|
||||
|
||||
1 2 3
|
||||
1 3 6
|
||||
2 11 1 13 14
|
||||
@@ -1,107 +0,0 @@
|
||||
# vtk DataFile Version 2.0
|
||||
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
|
||||
ASCII
|
||||
DATASET UNSTRUCTURED_GRID
|
||||
|
||||
POINTS 17 DOUBLE
|
||||
-1 0 0
|
||||
1 0 0
|
||||
0 1 0
|
||||
0 0 1
|
||||
0 -1 0
|
||||
-0.5 0 0.5
|
||||
-0.5 0.5 0
|
||||
0 0 0
|
||||
0 0.5 0.5
|
||||
0.5 0 0.5
|
||||
0.5 0.5 0
|
||||
-0.75 0 0.25
|
||||
-0.75 0.25 0
|
||||
-0.5 0 0
|
||||
-0.5 0.25 0.25
|
||||
-0.25 0 0.25
|
||||
-0.25 0.25 0
|
||||
|
||||
CELLS 18 90
|
||||
4 0 3 2 1
|
||||
4 0 4 3 1
|
||||
4 0 5 6 7
|
||||
4 5 3 8 9
|
||||
4 6 8 2 10
|
||||
4 7 9 10 1
|
||||
4 5 6 7 9
|
||||
4 5 6 8 9
|
||||
4 6 7 9 10
|
||||
4 6 8 9 10
|
||||
4 0 11 12 13
|
||||
4 11 5 14 15
|
||||
4 12 14 6 16
|
||||
4 13 15 16 7
|
||||
4 11 12 13 15
|
||||
4 11 12 14 15
|
||||
4 12 13 15 16
|
||||
4 12 14 15 16
|
||||
|
||||
CELL_TYPES 18
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
|
||||
POINT_DATA 17
|
||||
SCALARS vertex_id int 1
|
||||
LOOKUP_TABLE default
|
||||
0
|
||||
1
|
||||
2
|
||||
3
|
||||
4
|
||||
5
|
||||
6
|
||||
7
|
||||
8
|
||||
9
|
||||
10
|
||||
11
|
||||
12
|
||||
13
|
||||
14
|
||||
15
|
||||
16
|
||||
|
||||
CELL_DATA 18
|
||||
SCALARS cell_attribute_data int 1
|
||||
LOOKUP_TABLE default
|
||||
0
|
||||
1
|
||||
2
|
||||
3
|
||||
4
|
||||
5
|
||||
6
|
||||
7
|
||||
8
|
||||
9
|
||||
10
|
||||
11
|
||||
12
|
||||
13
|
||||
14
|
||||
15
|
||||
16
|
||||
17
|
||||
|
||||
@@ -1,59 +0,0 @@
|
||||
# vtk DataFile Version 2.0
|
||||
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
|
||||
ASCII
|
||||
DATASET UNSTRUCTURED_GRID
|
||||
|
||||
POINTS 17 DOUBLE
|
||||
-1 0 0
|
||||
1 0 0
|
||||
0 1 0
|
||||
0 0 1
|
||||
0 -1 0
|
||||
-0.5 0 0.5
|
||||
-0.5 0.5 0
|
||||
0 0 0
|
||||
0 0.5 0.5
|
||||
0.5 0 0.5
|
||||
0.5 0.5 0
|
||||
-0.75 0 0.25
|
||||
-0.75 0.25 0
|
||||
-0.5 0 0
|
||||
-0.5 0.25 0.25
|
||||
-0.25 0 0.25
|
||||
-0.25 0.25 0
|
||||
|
||||
CELLS 2 10
|
||||
4 0 3 2 1
|
||||
4 0 4 3 1
|
||||
|
||||
CELL_TYPES 2
|
||||
10
|
||||
10
|
||||
|
||||
POINT_DATA 17
|
||||
SCALARS vertex_id int 1
|
||||
LOOKUP_TABLE default
|
||||
0
|
||||
1
|
||||
2
|
||||
3
|
||||
4
|
||||
5
|
||||
6
|
||||
7
|
||||
8
|
||||
9
|
||||
10
|
||||
11
|
||||
12
|
||||
13
|
||||
14
|
||||
15
|
||||
16
|
||||
|
||||
CELL_DATA 2
|
||||
SCALARS cell_attribute_data int 1
|
||||
LOOKUP_TABLE default
|
||||
0
|
||||
1
|
||||
|
||||
@@ -1,80 +0,0 @@
|
||||
# vtk DataFile Version 2.0
|
||||
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
|
||||
ASCII
|
||||
DATASET UNSTRUCTURED_GRID
|
||||
|
||||
POINTS 17 DOUBLE
|
||||
-1 0 0
|
||||
1 0 0
|
||||
0 1 0
|
||||
0 0 1
|
||||
0 -1 0
|
||||
-0.5 0 0.5
|
||||
-0.5 0.5 0
|
||||
0 0 0
|
||||
0 0.5 0.5
|
||||
0.5 0 0.5
|
||||
0.5 0.5 0
|
||||
-0.75 0 0.25
|
||||
-0.75 0.25 0
|
||||
-0.5 0 0
|
||||
-0.5 0.25 0.25
|
||||
-0.25 0 0.25
|
||||
-0.25 0.25 0
|
||||
|
||||
CELLS 9 45
|
||||
4 0 4 3 1
|
||||
4 0 5 6 7
|
||||
4 5 3 8 9
|
||||
4 6 8 2 10
|
||||
4 7 9 10 1
|
||||
4 5 6 7 9
|
||||
4 5 6 8 9
|
||||
4 6 7 9 10
|
||||
4 6 8 9 10
|
||||
|
||||
CELL_TYPES 9
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
|
||||
POINT_DATA 17
|
||||
SCALARS vertex_id int 1
|
||||
LOOKUP_TABLE default
|
||||
0
|
||||
1
|
||||
2
|
||||
3
|
||||
4
|
||||
5
|
||||
6
|
||||
7
|
||||
8
|
||||
9
|
||||
10
|
||||
11
|
||||
12
|
||||
13
|
||||
14
|
||||
15
|
||||
16
|
||||
|
||||
CELL_DATA 9
|
||||
SCALARS cell_attribute_data int 1
|
||||
LOOKUP_TABLE default
|
||||
0
|
||||
1
|
||||
2
|
||||
3
|
||||
4
|
||||
5
|
||||
6
|
||||
7
|
||||
8
|
||||
|
||||
@@ -1,101 +0,0 @@
|
||||
# vtk DataFile Version 2.0
|
||||
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
|
||||
ASCII
|
||||
DATASET UNSTRUCTURED_GRID
|
||||
|
||||
POINTS 17 DOUBLE
|
||||
-1 0 0
|
||||
1 0 0
|
||||
0 1 0
|
||||
0 0 1
|
||||
0 -1 0
|
||||
-0.5 0 0.5
|
||||
-0.5 0.5 0
|
||||
0 0 0
|
||||
0 0.5 0.5
|
||||
0.5 0 0.5
|
||||
0.5 0.5 0
|
||||
-0.75 0 0.25
|
||||
-0.75 0.25 0
|
||||
-0.5 0 0
|
||||
-0.5 0.25 0.25
|
||||
-0.25 0 0.25
|
||||
-0.25 0.25 0
|
||||
|
||||
CELLS 16 80
|
||||
4 0 4 3 1
|
||||
4 5 3 8 9
|
||||
4 6 8 2 10
|
||||
4 7 9 10 1
|
||||
4 5 6 7 9
|
||||
4 5 6 8 9
|
||||
4 6 7 9 10
|
||||
4 6 8 9 10
|
||||
4 0 11 12 13
|
||||
4 11 5 14 15
|
||||
4 12 14 6 16
|
||||
4 13 15 16 7
|
||||
4 11 12 13 15
|
||||
4 11 12 14 15
|
||||
4 12 13 15 16
|
||||
4 12 14 15 16
|
||||
|
||||
CELL_TYPES 16
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
|
||||
POINT_DATA 17
|
||||
SCALARS vertex_id int 1
|
||||
LOOKUP_TABLE default
|
||||
0
|
||||
1
|
||||
2
|
||||
3
|
||||
4
|
||||
5
|
||||
6
|
||||
7
|
||||
8
|
||||
9
|
||||
10
|
||||
11
|
||||
12
|
||||
13
|
||||
14
|
||||
15
|
||||
16
|
||||
|
||||
CELL_DATA 16
|
||||
SCALARS cell_attribute_data int 1
|
||||
LOOKUP_TABLE default
|
||||
1
|
||||
3
|
||||
4
|
||||
5
|
||||
6
|
||||
7
|
||||
8
|
||||
9
|
||||
10
|
||||
11
|
||||
12
|
||||
13
|
||||
14
|
||||
15
|
||||
16
|
||||
17
|
||||
|
||||
@@ -1,13 +0,0 @@
|
||||
12 14
|
||||
2 11
|
||||
1 3
|
||||
2 4 12
|
||||
3 5
|
||||
4 6
|
||||
5 7 12
|
||||
6 8
|
||||
7 9
|
||||
8 10
|
||||
9 11 12
|
||||
1 10
|
||||
3 6 10
|
||||
@@ -1,12 +0,0 @@
|
||||
0
|
||||
1
|
||||
1
|
||||
1
|
||||
1
|
||||
1
|
||||
0
|
||||
0
|
||||
0
|
||||
0
|
||||
0
|
||||
1
|
||||
@@ -1,12 +0,0 @@
|
||||
1
|
||||
1
|
||||
2
|
||||
2
|
||||
2
|
||||
0
|
||||
0
|
||||
0
|
||||
0
|
||||
1
|
||||
1
|
||||
2
|
||||
@@ -1,49 +0,0 @@
|
||||
24 35
|
||||
%1
|
||||
2 8
|
||||
%2
|
||||
1 9 10
|
||||
%3
|
||||
4 10 11
|
||||
%4
|
||||
3 14 15
|
||||
%5
|
||||
6 13 15
|
||||
%6
|
||||
5 7
|
||||
%7
|
||||
6 21 23
|
||||
%8
|
||||
1 21 22
|
||||
%9
|
||||
2 12 17
|
||||
%10
|
||||
2 3 12
|
||||
%11
|
||||
3 12 19
|
||||
%12
|
||||
9 10 11
|
||||
%13
|
||||
5 16 18
|
||||
%14
|
||||
4 16 19
|
||||
%15
|
||||
4 5 16
|
||||
%16
|
||||
13 14 15
|
||||
%17
|
||||
9 20 22
|
||||
%18
|
||||
13 20 23
|
||||
%19
|
||||
11 14 20
|
||||
%20
|
||||
17 18 19
|
||||
%21
|
||||
7 8 24
|
||||
%22
|
||||
8 17 24
|
||||
%23
|
||||
7 18 24
|
||||
%24
|
||||
21 22 23
|
||||
@@ -1,24 +0,0 @@
|
||||
1
|
||||
1
|
||||
0
|
||||
0
|
||||
0
|
||||
0
|
||||
1
|
||||
1
|
||||
1
|
||||
1
|
||||
0
|
||||
1
|
||||
0
|
||||
0
|
||||
0
|
||||
0
|
||||
1
|
||||
0
|
||||
0
|
||||
0
|
||||
1
|
||||
1
|
||||
1
|
||||
1
|
||||
@@ -1,13 +0,0 @@
|
||||
12 1
|
||||
1 2 3
|
||||
2 3 4
|
||||
3 4 6
|
||||
4 5 6
|
||||
5 6 7
|
||||
6 7 8
|
||||
7 8 11
|
||||
8 10 11
|
||||
8 9 10
|
||||
3 8 9
|
||||
1 3 9
|
||||
3 6 8
|
||||
@@ -1,12 +0,0 @@
|
||||
1
|
||||
1
|
||||
1
|
||||
1
|
||||
0
|
||||
0
|
||||
0
|
||||
0
|
||||
0
|
||||
0
|
||||
1
|
||||
1
|
||||
@@ -1,12 +0,0 @@
|
||||
11 22
|
||||
2 3 9
|
||||
1 3 4
|
||||
1 2 4 6 8 9
|
||||
2 3 6 5
|
||||
4 6 7
|
||||
3 4 5 7 8
|
||||
5 6 8 11
|
||||
6 7 11 10 9 3
|
||||
8 10 3 1
|
||||
8 11 9
|
||||
7 8 10
|
||||
@@ -1,11 +0,0 @@
|
||||
1
|
||||
1
|
||||
1
|
||||
1
|
||||
1
|
||||
0
|
||||
0
|
||||
0
|
||||
0
|
||||
0
|
||||
0
|
||||
@@ -1,41 +0,0 @@
|
||||
20 43
|
||||
%1
|
||||
2 3 11
|
||||
%2
|
||||
1 3 4
|
||||
%3
|
||||
1 2 14 13 18 20
|
||||
%4
|
||||
2 14 12 6
|
||||
%5
|
||||
12 6 15 17 13
|
||||
%6
|
||||
4 5 7
|
||||
%7
|
||||
6 15 16 9
|
||||
%8
|
||||
9 10 19 18 17 16
|
||||
%9
|
||||
7 8 10
|
||||
%10
|
||||
8 9 11
|
||||
%11
|
||||
1 20 19 10
|
||||
%12
|
||||
4 14 13 5
|
||||
%13
|
||||
3 14 12 5 17 18
|
||||
%14
|
||||
3 13 12 4
|
||||
%15
|
||||
5 17 17 7
|
||||
%16
|
||||
7 8 17 15
|
||||
%17
|
||||
5 15 16 8 18 13
|
||||
%18
|
||||
3 13 17 8 19 20
|
||||
%19
|
||||
8 11 20 18
|
||||
%20
|
||||
3 18 19 11
|
||||
@@ -1,20 +0,0 @@
|
||||
1
|
||||
1
|
||||
1
|
||||
0
|
||||
0
|
||||
0
|
||||
0
|
||||
1
|
||||
1
|
||||
1
|
||||
1
|
||||
0
|
||||
0
|
||||
0
|
||||
0
|
||||
0
|
||||
0
|
||||
1
|
||||
1
|
||||
1
|
||||
-139
@@ -1,139 +0,0 @@
|
||||
/*!
|
||||
\mainpage H5hut: A High-Performance I/O Library for Particle-based Simulations
|
||||
|
||||
Particle-based simulations running on large high-performance computing systems
|
||||
over many time steps can generate an enormous amount of particle- and
|
||||
field-based data for post-processing and analysis. Achieving high-performance
|
||||
I/O for this data, effectively managing it on disk, and interfacing it with
|
||||
analysis and visualization tools can be challenging, especially for domain
|
||||
scientists who do not have I/O and data management expertise. We present the
|
||||
H5hut library, an implementation of several data models for particle-based
|
||||
simulations that encapsulates the complexity of HDF5 and is simple to use, yet
|
||||
does not compromise performance.
|
||||
|
||||
Developers:
|
||||
|
||||
<UL>
|
||||
<LI> Andreas Adelmann (PSI) </LI>
|
||||
<LI> Achim Gsell (PSI) </LI>
|
||||
<LI> Benedikt Oswald (PSI) </LI>
|
||||
<LI> Mark Howison (NERSC/LBNL) </LI>
|
||||
<LI> Prabhat (NERSC/LBNL) </LI>
|
||||
<LI> Wes Bethel (NERSC/LBNL) </LI>
|
||||
</UL>
|
||||
|
||||
Previous developers:
|
||||
|
||||
<UL>
|
||||
<LI> John Shalf (NERSC/LBNL)</LI>
|
||||
<LI> Cristina Siegerist (NERSC/LBNL)</LI>
|
||||
</UL>
|
||||
|
||||
For more information, please contact the <a href="mailto:h5part@lists.psi.ch">h5part</a> mailing list.
|
||||
|
||||
*/
|
||||
|
||||
/*!
|
||||
\defgroup h5hut_c_api H5hut C API
|
||||
*/
|
||||
/*!
|
||||
\ingroup h5hut_c_api
|
||||
\defgroup h5hut_file File Handling
|
||||
*/
|
||||
/*!
|
||||
\ingroup h5hut_c_api
|
||||
\defgroup h5hut_error Error Handling
|
||||
*/
|
||||
/*!
|
||||
\ingroup h5hut_c_api
|
||||
\defgroup h5hut_model Setting up the Data Model
|
||||
*/
|
||||
/*!
|
||||
\ingroup h5hut_c_api
|
||||
\defgroup h5hut_attrib Reading and Writing Attributes
|
||||
*/
|
||||
|
||||
|
||||
/*!
|
||||
\defgroup h5part_c_api H5Part C API
|
||||
*/
|
||||
/*!
|
||||
\ingroup h5part_c_api
|
||||
\defgroup h5part_model Setting up the Data Model
|
||||
*/
|
||||
/*!
|
||||
\ingroup h5part_c_api
|
||||
\defgroup h5part_data Reading and Writing Datasets
|
||||
*/
|
||||
|
||||
|
||||
/*!
|
||||
\defgroup h5block_c_api H5Block C API
|
||||
*/
|
||||
*/!
|
||||
\ingroup h5block_c_api
|
||||
\defgroup h5block_model Setting up the Data Model
|
||||
*/
|
||||
\ingroup h5block_c_api
|
||||
\defgroup h5block_data Reading and Writing Datasets
|
||||
*/
|
||||
\ingroup h5block_c_api
|
||||
\defgroup h5block_attrib Reading and Writing Attributes
|
||||
*/
|
||||
|
||||
|
||||
|
||||
/*!
|
||||
\defgroup h5fed_c_api H5Fed C API
|
||||
*/
|
||||
|
||||
|
||||
/*!
|
||||
\defgroup h5hut_f90_api H5hut F90 API
|
||||
*/
|
||||
|
||||
/*!
|
||||
\ingroup h5hut_f90_api
|
||||
\defgroup h5hut_file_f File Handling
|
||||
*/
|
||||
|
||||
/*!
|
||||
\ingroup h5hut_f90_api
|
||||
\defgroup h5hut_model_f Setting up the Data Model
|
||||
*/
|
||||
|
||||
/*!
|
||||
\ingroup h5hut_f90_api
|
||||
\defgroup h5hut_attrib_f Reading and Writing Attributes
|
||||
!<
|
||||
|
||||
|
||||
/*!
|
||||
\defgroup h5part_f90_api H5Part F90 API
|
||||
*/
|
||||
/*!
|
||||
\ingroup h5part_f90_api
|
||||
\defgroup h5part_model_f Setting up the Data Model
|
||||
*/
|
||||
/*!
|
||||
\ingroup h5part_f90_api
|
||||
\defgroup h5part_data_f Reading and Writing Datasets
|
||||
*/
|
||||
|
||||
|
||||
/*!
|
||||
\defgroup h5block_f90_api H5Block F90 API
|
||||
*/
|
||||
/*!
|
||||
\ingroup h5block_f90_api
|
||||
\defgroup h5block_model_f Setting up the Data Model
|
||||
*/
|
||||
/*!
|
||||
\ingroup h5block_f90_api
|
||||
\defgroup h5block_data_f Reading and Writing Datasets
|
||||
*/
|
||||
/*!
|
||||
\ingroup h5block_f90_api
|
||||
\defgroup h5block_attrib_f Reading and Writing Attributes
|
||||
*/
|
||||
|
||||
+2
-14
@@ -1,14 +1,2 @@
|
||||
EXTRA_DIST = \
|
||||
Doxyfile \
|
||||
H5.dox \
|
||||
Makefile.in
|
||||
|
||||
all:
|
||||
|
||||
doc:
|
||||
|
||||
doxydoc:
|
||||
doxygen
|
||||
|
||||
clean:
|
||||
${RM} -rf ReferencePages TWiki
|
||||
EXTRA_DIST = \
|
||||
Doxyfile doxyfooter
|
||||
|
||||
@@ -1,6 +0,0 @@
|
||||
<HTML>
|
||||
<HEAD>
|
||||
<TITLE>H5/H5Part/H5Block/H5Fed API</TITLE>
|
||||
<LINK HREF="doxygen.css" REL="stylesheet" TYPE="text/css">
|
||||
</HEAD>
|
||||
<BODY BGCOLOR="#FFFFFF">
|
||||
@@ -1,36 +0,0 @@
|
||||
#!/bin/bash
|
||||
|
||||
shopt -s nullglob
|
||||
|
||||
function html2twiki() {
|
||||
declare -rx infile=$1
|
||||
declare -rx outdir=$2
|
||||
declare -rx fname=$( sed -n 's/.* member="\([a-zA-Z0-9_.]*\)::\([_a-zA-Z0-9]*\)" .*/\2/p' "${infile}" )
|
||||
declare -rx outfile="${outdir}/${fname}.txt"
|
||||
|
||||
grep -q " member=" "${infile}" || return 0
|
||||
|
||||
sed '/Generated by/,/anchor/d' "${infile}" > "${outfile}"
|
||||
}
|
||||
|
||||
mkdir -p TWiki/h5_core
|
||||
mkdir -p TWiki/H5
|
||||
mkdir -p TWiki/H5Part
|
||||
mkdir -p TWiki/H5Block
|
||||
mkdir -p TWiki/H5Fed
|
||||
|
||||
for f in ReferencePages/group__h5__core_*.html; do
|
||||
html2twiki $f TWiki/h5_core
|
||||
done
|
||||
for f in ReferencePages/group__h5__c__api_*.html; do
|
||||
html2twiki $f TWiki/H5
|
||||
done
|
||||
for f in ReferencePages/group__h5part__c__api_*.html; do
|
||||
html2twiki $f TWiki/H5Part
|
||||
done
|
||||
for f in ReferencePages/group__h5block__c__api_*.html; do
|
||||
html2twiki $f TWiki/H5Block
|
||||
done
|
||||
for f in ReferencePages/group__h5fed__c__api_*.html; do
|
||||
html2twiki $f TWiki/H5Fed
|
||||
done
|
||||
-6982
File diff suppressed because it is too large
Load Diff
Binary file not shown.
|
Before Width: | Height: | Size: 8.4 KiB |
File diff suppressed because it is too large
Load Diff
@@ -1,10 +0,0 @@
|
||||
TET no. 0:
|
||||
0.5, 0.5, 0.0
|
||||
0.0, 0.0, 1.0
|
||||
0.0, 0.0, 0.0
|
||||
0.0, 1.0, 0.0
|
||||
TET no. 1:
|
||||
0.5, 0.5, 0.0
|
||||
0.0, 0.0, 0.0
|
||||
0.0, 0.0, 1.0
|
||||
1.0, 0.0, 0.0
|
||||
@@ -1,25 +0,0 @@
|
||||
# vtk DataFile Version 2.0
|
||||
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
|
||||
ASCII
|
||||
DATASET UNSTRUCTURED_GRID
|
||||
|
||||
POINTS 5 DOUBLE
|
||||
0.5 0.5 0.0
|
||||
0.0 0.0 1.0
|
||||
0.0 0.0 0.0
|
||||
0.0 1.0 0.0
|
||||
1.0 0.0 0.0
|
||||
|
||||
CELLS 2 10
|
||||
4 0 1 2 3
|
||||
4 0 2 1 4
|
||||
|
||||
CELL_TYPES 2
|
||||
10
|
||||
10
|
||||
|
||||
CELL_DATA 2
|
||||
SCALARS cell_attribute_data float 1
|
||||
LOOKUP_TABLE default
|
||||
0
|
||||
1
|
||||
Binary file not shown.
|
Before Width: | Height: | Size: 8.0 KiB |
Binary file not shown.
|
Before Width: | Height: | Size: 8.0 KiB |
Binary file not shown.
|
Before Width: | Height: | Size: 8.5 KiB |
File diff suppressed because it is too large
Load Diff
@@ -1,10 +0,0 @@
|
||||
TET no. 0:
|
||||
0.0, 0.5, 0.5
|
||||
0.0, 0.0, 0.0
|
||||
1.0, 0.0, 0.0
|
||||
0.0, 1.0, 0.0
|
||||
TET no. 1:
|
||||
0.0, 0.5, 0.5
|
||||
1.0, 0.0, 0.0
|
||||
0.0, 0.0, 0.0
|
||||
0.0, 0.0, 1.0
|
||||
@@ -1,25 +0,0 @@
|
||||
# vtk DataFile Version 2.0
|
||||
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
|
||||
ASCII
|
||||
DATASET UNSTRUCTURED_GRID
|
||||
|
||||
POINTS 5 DOUBLE
|
||||
0.0 0.5 0.5
|
||||
0.0 0.0 0.0
|
||||
1.0 0.0 0.0
|
||||
0.0 1.0 0.0
|
||||
0.0 0.0 1.0
|
||||
|
||||
CELLS 2 10
|
||||
4 0 1 2 3
|
||||
4 0 2 1 4
|
||||
|
||||
CELL_TYPES 2
|
||||
10
|
||||
10
|
||||
|
||||
CELL_DATA 2
|
||||
SCALARS cell_attribute_data float 1
|
||||
LOOKUP_TABLE default
|
||||
0
|
||||
1
|
||||
Binary file not shown.
|
Before Width: | Height: | Size: 8.1 KiB |
Binary file not shown.
|
Before Width: | Height: | Size: 8.7 KiB |
File diff suppressed because it is too large
Load Diff
@@ -1,10 +0,0 @@
|
||||
TET no. 0:
|
||||
0.5, 0.0, 0.5
|
||||
0.0, 0.0, 0.0
|
||||
0.0, 1.0, 0.0
|
||||
0.0, 0.0, 1.0
|
||||
TET no. 1:
|
||||
0.5, 0.0, 0.5
|
||||
0.0, 1.0, 0.0
|
||||
0.0, 0.0, 0.0
|
||||
1.0, 0.0, 0.0
|
||||
@@ -1,25 +0,0 @@
|
||||
# vtk DataFile Version 2.0
|
||||
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
|
||||
ASCII
|
||||
DATASET UNSTRUCTURED_GRID
|
||||
|
||||
POINTS 5 DOUBLE
|
||||
0.5 0.0 0.5
|
||||
0.0 0.0 0.0
|
||||
0.0 1.0 0.0
|
||||
0.0 0.0 1.0
|
||||
1.0 0.0 0.0
|
||||
|
||||
CELLS 2 10
|
||||
4 0 1 2 3
|
||||
4 0 2 1 4
|
||||
|
||||
CELL_TYPES 2
|
||||
10
|
||||
10
|
||||
|
||||
CELL_DATA 2
|
||||
SCALARS cell_attribute_data float 1
|
||||
LOOKUP_TABLE default
|
||||
0
|
||||
1
|
||||
Binary file not shown.
|
Before Width: | Height: | Size: 8.9 KiB |
Binary file not shown.
|
Before Width: | Height: | Size: 8.3 KiB |
File diff suppressed because it is too large
Load Diff
@@ -1,10 +0,0 @@
|
||||
TET no. 0:
|
||||
0.0, 0.0, 0.5
|
||||
1.0, 0.0, 0.0
|
||||
0.0, 1.0, 0.0
|
||||
0.0, 0.0, 0.0
|
||||
TET no. 1:
|
||||
0.0, 0.0, 0.5
|
||||
0.0, 1.0, 0.0
|
||||
1.0, 0.0, 0.0
|
||||
0.0, 0.0, 1.0
|
||||
@@ -1,25 +0,0 @@
|
||||
# vtk DataFile Version 2.0
|
||||
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
|
||||
ASCII
|
||||
DATASET UNSTRUCTURED_GRID
|
||||
|
||||
POINTS 5 DOUBLE
|
||||
0.0 0.0 0.5
|
||||
1.0 0.0 0.0
|
||||
0.0 1.0 0.0
|
||||
0.0 0.0 0.0
|
||||
0.0 0.0 1.0
|
||||
|
||||
CELLS 2 10
|
||||
4 0 1 2 3
|
||||
4 0 2 1 4
|
||||
|
||||
CELL_TYPES 2
|
||||
10
|
||||
10
|
||||
|
||||
CELL_DATA 2
|
||||
SCALARS cell_attribute_data float 1
|
||||
LOOKUP_TABLE default
|
||||
0
|
||||
1
|
||||
Binary file not shown.
|
Before Width: | Height: | Size: 8.4 KiB |
Binary file not shown.
|
Before Width: | Height: | Size: 8.0 KiB |
File diff suppressed because it is too large
Load Diff
@@ -1,10 +0,0 @@
|
||||
TET no. 0:
|
||||
0.5, 0.0, 0.0
|
||||
0.0, 1.0, 0.0
|
||||
0.0, 0.0, 1.0
|
||||
0.0, 0.0, 0.0
|
||||
TET no. 1:
|
||||
0.5, 0.0, 0.0
|
||||
0.0, 0.0, 1.0
|
||||
0.0, 1.0, 0.0
|
||||
1.0, 0.0, 0.0
|
||||
@@ -1,25 +0,0 @@
|
||||
# vtk DataFile Version 2.0
|
||||
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
|
||||
ASCII
|
||||
DATASET UNSTRUCTURED_GRID
|
||||
|
||||
POINTS 5 DOUBLE
|
||||
0.5 0.0 0.0
|
||||
0.0 1.0 0.0
|
||||
0.0 0.0 1.0
|
||||
0.0 0.0 0.0
|
||||
1.0 0.0 0.0
|
||||
|
||||
CELLS 2 10
|
||||
4 0 1 2 3
|
||||
4 0 2 1 4
|
||||
|
||||
CELL_TYPES 2
|
||||
10
|
||||
10
|
||||
|
||||
CELL_DATA 2
|
||||
SCALARS cell_attribute_data float 1
|
||||
LOOKUP_TABLE default
|
||||
0
|
||||
1
|
||||
Binary file not shown.
|
Before Width: | Height: | Size: 7.8 KiB |
Binary file not shown.
|
Before Width: | Height: | Size: 9.1 KiB |
File diff suppressed because it is too large
Load Diff
@@ -1,10 +0,0 @@
|
||||
TET no. 0:
|
||||
0.0, 0.5, 0.0
|
||||
0.0, 0.0, 1.0
|
||||
1.0, 0.0, 0.0
|
||||
0.0, 0.0, 0.0
|
||||
TET no. 1:
|
||||
0.0, 0.5, 0.0
|
||||
1.0, 0.0, 0.0
|
||||
0.0, 0.0, 1.0
|
||||
0.0, 1.0, 0.0
|
||||
@@ -1,25 +0,0 @@
|
||||
# vtk DataFile Version 2.0
|
||||
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
|
||||
ASCII
|
||||
DATASET UNSTRUCTURED_GRID
|
||||
|
||||
POINTS 5 DOUBLE
|
||||
0.0 0.5 0.0
|
||||
0.0 0.0 1.0
|
||||
1.0 0.0 0.0
|
||||
0.0 0.0 0.0
|
||||
0.0 1.0 0.0
|
||||
|
||||
CELLS 2 10
|
||||
4 0 1 2 3
|
||||
4 0 2 1 4
|
||||
|
||||
CELL_TYPES 2
|
||||
10
|
||||
10
|
||||
|
||||
CELL_DATA 2
|
||||
SCALARS cell_attribute_data float 1
|
||||
LOOKUP_TABLE default
|
||||
0
|
||||
1
|
||||
Binary file not shown.
|
Before Width: | Height: | Size: 8.7 KiB |
Binary file not shown.
|
Before Width: | Height: | Size: 8.8 KiB |
File diff suppressed because it is too large
Load Diff
@@ -1,15 +0,0 @@
|
||||
TET no. 0:
|
||||
0.5, 0.5, 0.0
|
||||
0.0, 1.0, 0.0
|
||||
0.0, 0.5, 0.5
|
||||
0.0, 0.0, 0.0
|
||||
TET no. 1:
|
||||
0.0, 0.5, 0.5
|
||||
1.0, 0.0, 0.0
|
||||
0.5, 0.5, 0.0
|
||||
0.0, 0.0, 0.0
|
||||
TET no. 2:
|
||||
1.0, 0.0, 0.0
|
||||
0.0, 0.5, 0.5
|
||||
0.0, 0.0, 1.0
|
||||
0.0, 0.0, 0.0
|
||||
@@ -1,29 +0,0 @@
|
||||
# vtk DataFile Version 2.0
|
||||
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
|
||||
ASCII
|
||||
DATASET UNSTRUCTURED_GRID
|
||||
|
||||
POINTS 6 DOUBLE
|
||||
0.5 0.5 0.0
|
||||
0.0 1.0 0.0
|
||||
0.0 0.5 0.5
|
||||
0.0 0.0 0.0
|
||||
1.0 0.0 0.0
|
||||
0.0 0.0 1.0
|
||||
|
||||
CELLS 3 15
|
||||
4 0 1 2 3
|
||||
4 2 4 0 3
|
||||
4 4 2 5 3
|
||||
|
||||
CELL_TYPES 3
|
||||
10
|
||||
10
|
||||
10
|
||||
|
||||
CELL_DATA 3
|
||||
SCALARS cell_attribute_data float 1
|
||||
LOOKUP_TABLE default
|
||||
0
|
||||
1
|
||||
2
|
||||
Binary file not shown.
|
Before Width: | Height: | Size: 8.5 KiB |
Binary file not shown.
|
Before Width: | Height: | Size: 8.5 KiB |
Binary file not shown.
|
Before Width: | Height: | Size: 9.6 KiB |
File diff suppressed because it is too large
Load Diff
@@ -1,15 +0,0 @@
|
||||
TET no. 0:
|
||||
0.5, 0.0, 0.5
|
||||
1.0, 0.0, 0.0
|
||||
0.5, 0.5, 0.0
|
||||
0.0, 0.0, 0.0
|
||||
TET no. 1:
|
||||
0.5, 0.5, 0.0
|
||||
0.0, 0.0, 1.0
|
||||
0.5, 0.0, 0.5
|
||||
0.0, 0.0, 0.0
|
||||
TET no. 2:
|
||||
0.0, 0.0, 1.0
|
||||
0.5, 0.5, 0.0
|
||||
0.0, 1.0, 0.0
|
||||
0.0, 0.0, 0.0
|
||||
@@ -1,29 +0,0 @@
|
||||
# vtk DataFile Version 2.0
|
||||
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
|
||||
ASCII
|
||||
DATASET UNSTRUCTURED_GRID
|
||||
|
||||
POINTS 6 DOUBLE
|
||||
0.5 0.0 0.5
|
||||
1.0 0.0 0.0
|
||||
0.5 0.5 0.0
|
||||
0.0 0.0 0.0
|
||||
0.0 0.0 1.0
|
||||
0.0 1.0 0.0
|
||||
|
||||
CELLS 3 15
|
||||
4 0 1 2 3
|
||||
4 2 4 0 3
|
||||
4 4 2 5 3
|
||||
|
||||
CELL_TYPES 3
|
||||
10
|
||||
10
|
||||
10
|
||||
|
||||
CELL_DATA 3
|
||||
SCALARS cell_attribute_data float 1
|
||||
LOOKUP_TABLE default
|
||||
0
|
||||
1
|
||||
2
|
||||
Binary file not shown.
|
Before Width: | Height: | Size: 9.2 KiB |
Binary file not shown.
|
Before Width: | Height: | Size: 11 KiB |
File diff suppressed because it is too large
Load Diff
@@ -1,20 +0,0 @@
|
||||
TET no. 0:
|
||||
1.0, 0.0, 0.0
|
||||
0.5, 0.5, 0.0
|
||||
0.0, 0.0, 0.5
|
||||
0.0, 0.0, 0.0
|
||||
TET no. 1:
|
||||
0.5, 0.5, 0.0
|
||||
0.0, 1.0, 0.0
|
||||
0.0, 0.0, 0.5
|
||||
0.0, 0.0, 0.0
|
||||
TET no. 2:
|
||||
0.5, 0.5, 0.0
|
||||
0.0, 0.0, 0.5
|
||||
0.0, 1.0, 0.0
|
||||
0.0, 0.0, 1.0
|
||||
TET no. 3:
|
||||
1.0, 0.0, 0.0
|
||||
0.0, 0.0, 0.5
|
||||
0.5, 0.5, 0.0
|
||||
0.0, 0.0, 1.0
|
||||
@@ -1,32 +0,0 @@
|
||||
# vtk DataFile Version 2.0
|
||||
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
|
||||
ASCII
|
||||
DATASET UNSTRUCTURED_GRID
|
||||
|
||||
POINTS 6 DOUBLE
|
||||
1.0 0.0 0.0
|
||||
0.5 0.5 0.0
|
||||
0.0 0.0 0.5
|
||||
0.0 0.0 0.0
|
||||
0.0 1.0 0.0
|
||||
0.0 0.0 1.0
|
||||
|
||||
CELLS 4 20
|
||||
4 0 1 2 3
|
||||
4 1 4 2 3
|
||||
4 1 2 4 5
|
||||
4 0 2 1 5
|
||||
|
||||
CELL_TYPES 4
|
||||
10
|
||||
10
|
||||
10
|
||||
10
|
||||
|
||||
CELL_DATA 4
|
||||
SCALARS cell_attribute_data float 1
|
||||
LOOKUP_TABLE default
|
||||
0
|
||||
1
|
||||
2
|
||||
3
|
||||
Binary file not shown.
|
Before Width: | Height: | Size: 12 KiB |
Binary file not shown.
|
Before Width: | Height: | Size: 12 KiB |
Binary file not shown.
|
Before Width: | Height: | Size: 10 KiB |
File diff suppressed because it is too large
Load Diff
@@ -1,15 +0,0 @@
|
||||
TET no. 0:
|
||||
0.5, 0.5, 0.0
|
||||
1.0, 0.0, 0.0
|
||||
0.5, 0.0, 0.0
|
||||
0.0, 0.0, 1.0
|
||||
TET no. 1:
|
||||
0.5, 0.0, 0.0
|
||||
0.0, 1.0, 0.0
|
||||
0.5, 0.5, 0.0
|
||||
0.0, 0.0, 1.0
|
||||
TET no. 2:
|
||||
0.0, 1.0, 0.0
|
||||
0.5, 0.0, 0.0
|
||||
0.0, 0.0, 0.0
|
||||
0.0, 0.0, 1.0
|
||||
@@ -1,29 +0,0 @@
|
||||
# vtk DataFile Version 2.0
|
||||
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
|
||||
ASCII
|
||||
DATASET UNSTRUCTURED_GRID
|
||||
|
||||
POINTS 6 DOUBLE
|
||||
0.5 0.5 0.0
|
||||
1.0 0.0 0.0
|
||||
0.5 0.0 0.0
|
||||
0.0 0.0 1.0
|
||||
0.0 1.0 0.0
|
||||
0.0 0.0 0.0
|
||||
|
||||
CELLS 3 15
|
||||
4 0 1 2 3
|
||||
4 2 4 0 3
|
||||
4 4 2 5 3
|
||||
|
||||
CELL_TYPES 3
|
||||
10
|
||||
10
|
||||
10
|
||||
|
||||
CELL_DATA 3
|
||||
SCALARS cell_attribute_data float 1
|
||||
LOOKUP_TABLE default
|
||||
0
|
||||
1
|
||||
2
|
||||
Binary file not shown.
|
Before Width: | Height: | Size: 11 KiB |
Binary file not shown.
|
Before Width: | Height: | Size: 11 KiB |
File diff suppressed because it is too large
Load Diff
@@ -1,15 +0,0 @@
|
||||
TET no. 0:
|
||||
0.0, 0.5, 0.0
|
||||
0.0, 1.0, 0.0
|
||||
0.5, 0.5, 0.0
|
||||
0.0, 0.0, 1.0
|
||||
TET no. 1:
|
||||
0.5, 0.5, 0.0
|
||||
0.0, 0.0, 0.0
|
||||
0.0, 0.5, 0.0
|
||||
0.0, 0.0, 1.0
|
||||
TET no. 2:
|
||||
0.0, 0.0, 0.0
|
||||
0.5, 0.5, 0.0
|
||||
1.0, 0.0, 0.0
|
||||
0.0, 0.0, 1.0
|
||||
@@ -1,29 +0,0 @@
|
||||
# vtk DataFile Version 2.0
|
||||
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
|
||||
ASCII
|
||||
DATASET UNSTRUCTURED_GRID
|
||||
|
||||
POINTS 6 DOUBLE
|
||||
0.0 0.5 0.0
|
||||
0.0 1.0 0.0
|
||||
0.5 0.5 0.0
|
||||
0.0 0.0 1.0
|
||||
0.0 0.0 0.0
|
||||
1.0 0.0 0.0
|
||||
|
||||
CELLS 3 15
|
||||
4 0 1 2 3
|
||||
4 2 4 0 3
|
||||
4 4 2 5 3
|
||||
|
||||
CELL_TYPES 3
|
||||
10
|
||||
10
|
||||
10
|
||||
|
||||
CELL_DATA 3
|
||||
SCALARS cell_attribute_data float 1
|
||||
LOOKUP_TABLE default
|
||||
0
|
||||
1
|
||||
2
|
||||
Binary file not shown.
|
Before Width: | Height: | Size: 12 KiB |
Binary file not shown.
|
Before Width: | Height: | Size: 9.5 KiB |
File diff suppressed because it is too large
Load Diff
@@ -1,15 +0,0 @@
|
||||
TET no. 0:
|
||||
0.0, 0.5, 0.5
|
||||
0.0, 0.0, 1.0
|
||||
0.5, 0.0, 0.5
|
||||
0.0, 0.0, 0.0
|
||||
TET no. 1:
|
||||
0.5, 0.0, 0.5
|
||||
0.0, 1.0, 0.0
|
||||
0.0, 0.5, 0.5
|
||||
0.0, 0.0, 0.0
|
||||
TET no. 2:
|
||||
0.0, 1.0, 0.0
|
||||
0.5, 0.0, 0.5
|
||||
1.0, 0.0, 0.0
|
||||
0.0, 0.0, 0.0
|
||||
Some files were not shown because too many files have changed in this diff Show More
Reference in New Issue
Block a user