diff --git a/configure.ac b/configure.ac
index 6d13b5e..cd59d42 100644
--- a/configure.ac
+++ b/configure.ac
@@ -575,7 +575,7 @@ AC_SUBST(TOOLS_HDFLIB)
 AC_CONFIG_FILES([
 Makefile
 doc/Makefile
-src/h5/Makefile
+src/h5_core/Makefile
 src/bindings/Makefile
 src/bindings/C++/Makefile
 src/Makefile