Continue run

cbatch.tsh

@@ -0,0 +1,32 @@
+#!/usr/bin/env tcsh
+#SBATCH -J mcnpEstia
+#SBATCH -N 2
+#SBATCH --ntasks-per-node=24
+#SBATCH --time=48:00:00
+#SBATCH --mail-type=fail
+#SBATCH --mail-user=artur.glavic@psi.ch
+#SBATCH -o tmp/stdout.log
+#SBATCH -e tmp/stderr.log
+#SBATCH --partition=ll_verylong
+
+setenv CURRENT_VERSION $1
+setenv CONTINUE_VERSION $2
+#"`/usr/bin/git describe --tags --long`"
+
+echo "Starting continue of run $CONTINUE_VERSION at `date`"
+echo "Running on hosts: $SLURM_NODELIST"
+echo "Running on $SLURM_NNODES nodes."
+echo "Running on $SLURM_NPROCS processors."
+echo "Current working directory is `pwd`"
+echo "Estia GIT revision is $CURRENT_VERSION"
+
+mpirun -np $SLURM_NPROCS mcnp6.mpi c \
+      inp=crun.i outp=results/e2-estia_$CURRENT_VERSION.out \
+      runtpe=runs/e2-estia_$CONTINUE_VERSION.run \
+      mctal=results/e2-estia_$CURRENT_VERSION.mct \
+      mdata=results/e2-estia_$CURRENT_VERSION.mdt \
+      wwout=weight_windows/e2-estia_$CURRENT_VERSION.wwg \
+      wwone=weight_windows/e2-estia_$CURRENT_VERSION.wwo \
+      wwinp=weight_windows/current.wwg
+
+echo "Program finished with exit code $? at: `date`"

crun.i

@@ -0,0 +1,2 @@
+CONTINUE
+nps 1e7

csubmit

@@ -0,0 +1,22 @@
+#!/bin/bash
+# make sure the tag for the generated files is correct 
+# by checking that all changes have been commited to GIT
+# (this does not include newly created files)
+if ( ! git diff-index --quiet --cached HEAD -- ) || ( ! git diff-files --quiet )
+  then
+    echo "Uncommitted changes in the GIT repository:"
+    git status --untracked-files=no
+
+    read -p "Add changes and commit, amend last commit or exit [c/a/e]: " res
+    case $res in
+        [Cc]* ) git commit -a;;
+        [Aa]* ) git commit -a --amend;;
+        * ) exit;;
+    esac
+fi
+
+sbatch cbatch.tsh "`/usr/bin/git describe --tags --long`" $1
+
+# waiting for batch job to start and send all output directly to terminal
+sleep 2
+tail -qf tmp/stdout.log tmp/stderr.log