57 lines
1.8 KiB
YAML
Executable File
57 lines
1.8 KiB
YAML
Executable File
# The old Analysis-edge environment derived from the same set of packages but using
|
|
# the most up-to-date packages from conda-forge. This env will be replaced by 'analysis'
|
|
# Therefore this will follow upstream packages closer but also break from time to time.
|
|
name: analysis_edge
|
|
channels:
|
|
- conda-forge
|
|
dependencies:
|
|
# essentials
|
|
- python>=3.11
|
|
- pip
|
|
- numpy
|
|
- scipy
|
|
- pandas
|
|
- numba
|
|
- matplotlib
|
|
- ipython
|
|
- jupyterlab
|
|
- ipympl
|
|
- joblib
|
|
- tqdm # sfdata dependency but here given explicitly
|
|
- lmfit
|
|
- pytest
|
|
# useful development packages
|
|
- black
|
|
- pytest
|
|
- h5py # sfdata dependency but here given explicitly
|
|
- pint
|
|
- line_profiler
|
|
- loguru
|
|
- pylint
|
|
- ipytest # used to be taken from pip, but here we test the conda-forge version
|
|
- sqlalchemy # X-ray transmission calculations and similar
|
|
- xraydb # X-ray transmission calculations and similar
|
|
- scikit-image # Image processing
|
|
# and extra control parts
|
|
- fabric
|
|
# Jupyterlab extensions
|
|
- nb_conda_kernels # for discovery of other kernels
|
|
# - jupyterlab-drawio
|
|
- jupyterlab_code_formatter
|
|
# - jupytext # needs to be tested manually
|
|
# PSI specific modules
|
|
- paulscherrerinstitute::sfdata
|
|
# - paulscherrerinstitute::jungfrau_utils # should be a dependency of sfdata, but not listed there explicitly, so test
|
|
# - pip:
|
|
# - ipytest
|
|
## Dependencies
|
|
# - bitshuffle # dependency of sfdata
|
|
# - colorama # dependency of sfdata
|
|
## Probably can be removed
|
|
# - astropy # Used for conversion of magnet coordinates, probably not needed any more
|
|
# - loguru # Not sure if it's needed in the analysis env
|
|
# - pyqt # Not sure if it's needed in the analysis env
|
|
# still necessary manually afterwards:
|
|
# pip install jupyterlab_hdf
|
|
# jupyter labextension install @jupyterlab/hdf5
|