# Analysis environment derived from the same set of packages but using 
# the most up-to-date packages from conda-forge. 
# Therefore this will follow upstream packages closer but also break from time to time.
# For more conservative use, use 'analysis-stable'

name: analysis
channels:
   - conda-forge
dependencies:
# essentials
   - python=3.12   # keep at 3.12 beause of bitshuffle
   - pip
   - numpy
   - scipy
   - pandas
   - numba
   - matplotlib
   - ipython
   - jupyterlab
   - ipympl
   - joblib
   - tqdm # sfdata dependency but here given explicitly
   - lmfit
   - pytest
   - bitshuffle=0.5.2=py312h5fdea32_5  # this specific build of bitshuffle works with python 3.12
                                       # for higher versions new build must be found
# useful development packages
   - black
   - pytest  # for testing the cristallina package
   - h5py # sfdata dependency but here given explicitly
   - pint
   - line_profiler
   - loguru
   - pylint
   - ipytest      # used to be taken from pip, but here we test the conda-forge version
   - sqlalchemy   # X-ray transmission calculations and similar
   - xraydb       # X-ray transmission calculations and similar
   - scikit-image # Image processing
   - partialjson  # For processing unfinished runs
# and extra control parts
   - fabric
# Jupyterlab extensions
   - nb_conda_kernels # for discovery of other kernels
#   - jupyterlab-drawio
   - jupyterlab_code_formatter
   # - jupytext # needs to be tested manually
# PSI specific modules
   - paulscherrerinstitute::sfdata
   - paulscherrerinstitute::jungfrau_utils # should be a dependency of sfdata, but not listed there explicitly
   - paulscherrerinstitute::data_api
   - pip:
      - -e /sf/cristallina/applications/cristallina     # Creates a "local package" of cristallina
   # If wanted, jupyterlab_hdf can be added for nicer tables
   # pip install jupyterlab_hdf
   # jupyter labextension install @jupyterlab/hdf5

## Dependencies
#   - colorama   # dependency of sfdata

## Probably can be removed
# - astropy    # Used for conversion of magnet coordinates, probably not needed any more
# - pyqt       # Not sure if it's needed in the analysis env