392 lines
15 KiB
HTML
392 lines
15 KiB
HTML
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<!DOCTYPE html>
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<head>
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<meta charset="utf-8" />
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<meta name="viewport" content="width=device-width, initial-scale=1.0" />
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<title>Index — cristallina 0.0.post1.dev53+g9be81e9.d20230129 documentation</title>
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<meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
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</head><body>
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<div class="document">
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<div class="documentwrapper">
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<div class="bodywrapper">
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<div class="body" role="main">
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<h1 id="index">Index</h1>
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<div class="genindex-jumpbox">
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<a href="#A"><strong>A</strong></a>
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| <a href="#C"><strong>C</strong></a>
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| <a href="#E"><strong>E</strong></a>
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| <a href="#F"><strong>F</strong></a>
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| <a href="#G"><strong>G</strong></a>
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| <a href="#H"><strong>H</strong></a>
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| <a href="#J"><strong>J</strong></a>
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| <a href="#L"><strong>L</strong></a>
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| <a href="#M"><strong>M</strong></a>
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| <a href="#P"><strong>P</strong></a>
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| <a href="#R"><strong>R</strong></a>
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| <a href="#S"><strong>S</strong></a>
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| <a href="#W"><strong>W</strong></a>
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| <a href="#X"><strong>X</strong></a>
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</div>
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<h2 id="A">A</h2>
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<table style="width: 100%" class="indextable genindextable"><tr>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="api/cristallina.html#cristallina.plot.axis_styling">axis_styling() (in module cristallina.plot)</a>
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</li>
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</ul></td>
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</tr></table>
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<h2 id="C">C</h2>
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<table style="width: 100%" class="indextable genindextable"><tr>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="api/cristallina.html#cristallina.utils.channel_names">channel_names() (in module cristallina.utils)</a>
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</li>
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<li><a href="api/cristallina.html#cristallina.SEA_GraphClient.GraphClient.close">close() (cristallina.SEA_GraphClient.GraphClient method)</a>
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</li>
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<li><a href="api/cristallina.html#cristallina.utils.ROI.cols">cols (cristallina.utils.ROI property)</a>
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</li>
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<li>
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cristallina
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<ul>
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<li><a href="api/cristallina.html#module-cristallina">module</a>
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</li>
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</ul></li>
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<li>
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cristallina.analysis
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<ul>
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<li><a href="api/cristallina.html#module-cristallina.analysis">module</a>
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</li>
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</ul></li>
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<li>
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cristallina.config
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<ul>
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<li><a href="api/cristallina.html#module-cristallina.config">module</a>
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</li>
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</ul></li>
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</ul></td>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li>
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cristallina.plot
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<ul>
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<li><a href="api/cristallina.html#module-cristallina.plot">module</a>
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</li>
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</ul></li>
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<li>
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cristallina.SEA_GraphClient
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<ul>
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<li><a href="api/cristallina.html#module-cristallina.SEA_GraphClient">module</a>
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</li>
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</ul></li>
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<li>
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cristallina.skeleton
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<ul>
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<li><a href="api/cristallina.html#module-cristallina.skeleton">module</a>
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</li>
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</ul></li>
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<li>
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cristallina.utils
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<ul>
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<li><a href="api/cristallina.html#module-cristallina.utils">module</a>
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</li>
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</ul></li>
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</ul></td>
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</tr></table>
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<h2 id="E">E</h2>
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<table style="width: 100%" class="indextable genindextable"><tr>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="api/cristallina.html#cristallina.utils.eV_to_joules">eV_to_joules() (in module cristallina.utils)</a>
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</li>
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</ul></td>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="api/cristallina.html#cristallina.SEA_GraphClient.expect_reply">expect_reply() (in module cristallina.SEA_GraphClient)</a>
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</li>
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</ul></td>
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</tr></table>
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<h2 id="F">F</h2>
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<table style="width: 100%" class="indextable genindextable"><tr>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="api/cristallina.html#cristallina.skeleton.fib">fib() (in module cristallina.skeleton)</a>
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</li>
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<li><a href="api/cristallina.html#cristallina.utils.find_nearest">find_nearest() (in module cristallina.utils)</a>
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</li>
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<li><a href="api/cristallina.html#cristallina.utils.find_two_nearest">find_two_nearest() (in module cristallina.utils)</a>
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</li>
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</ul></td>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="api/cristallina.html#cristallina.analysis.fit_2d_gaussian">fit_2d_gaussian() (in module cristallina.analysis)</a>
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</li>
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<li><a href="api/cristallina.html#cristallina.utils.ROI.from_centers_widths">from_centers_widths() (cristallina.utils.ROI method)</a>
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</li>
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<li><a href="api/cristallina.html#cristallina.utils.FWHM_to_sigma">FWHM_to_sigma() (in module cristallina.utils)</a>
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</li>
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</ul></td>
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</tr></table>
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<h2 id="G">G</h2>
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<table style="width: 100%" class="indextable genindextable"><tr>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="api/cristallina.html#cristallina.utils.gauss">gauss() (in module cristallina.utils)</a>
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</li>
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<li><a href="api/cristallina.html#cristallina.utils.gauss_fit">gauss_fit() (in module cristallina.utils)</a>
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</li>
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<li><a href="api/cristallina.html#cristallina.analysis.get_contrast_images">get_contrast_images() (in module cristallina.analysis)</a>
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</li>
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</ul></td>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="api/cristallina.html#cristallina.SEA_GraphClient.GraphClient.get_curves">get_curves() (cristallina.SEA_GraphClient.GraphClient method)</a>
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</li>
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<li><a href="api/cristallina.html#cristallina.SEA_GraphClient.GraphClient.get_names">get_names() (cristallina.SEA_GraphClient.GraphClient method)</a>
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</li>
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<li><a href="api/cristallina.html#cristallina.SEA_GraphClient.GraphClient.get_raw">get_raw() (cristallina.SEA_GraphClient.GraphClient method)</a>
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</li>
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<li><a href="api/cristallina.html#cristallina.SEA_GraphClient.GraphClient">GraphClient (class in cristallina.SEA_GraphClient)</a>
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</li>
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</ul></td>
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</tr></table>
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<h2 id="H">H</h2>
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<table style="width: 100%" class="indextable genindextable"><tr>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="api/cristallina.html#cristallina.utils.ROI.height">height (cristallina.utils.ROI property)</a>
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</li>
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<li><a href="api/cristallina.html#cristallina.utils.heuristic_extract_base_path">heuristic_extract_base_path() (in module cristallina.utils)</a>
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</li>
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</ul></td>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="api/cristallina.html#cristallina.utils.heuristic_extract_pgroup">heuristic_extract_pgroup() (in module cristallina.utils)</a>
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</li>
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<li><a href="api/cristallina.html#cristallina.utils.heuristic_extract_smalldata_path">heuristic_extract_smalldata_path() (in module cristallina.utils)</a>
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</li>
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</ul></td>
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</tr></table>
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<h2 id="J">J</h2>
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<table style="width: 100%" class="indextable genindextable"><tr>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="api/cristallina.html#cristallina.utils.joules_to_eV">joules_to_eV() (in module cristallina.utils)</a>
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</li>
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</ul></td>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="api/cristallina.html#cristallina.plot.ju_patch_less_verbose">ju_patch_less_verbose() (in module cristallina.plot)</a>
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</li>
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</ul></td>
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</tr></table>
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<h2 id="L">L</h2>
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<table style="width: 100%" class="indextable genindextable"><tr>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="api/cristallina.html#cristallina.utils.ROI.LeftRightBottomTop">LeftRightBottomTop (cristallina.utils.ROI property)</a>
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</li>
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</ul></td>
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</tr></table>
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<h2 id="M">M</h2>
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<table style="width: 100%" class="indextable genindextable"><tr>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="api/cristallina.html#cristallina.skeleton.main">main() (in module cristallina.skeleton)</a>
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</li>
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<li>
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module
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<ul>
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<li><a href="api/cristallina.html#module-cristallina">cristallina</a>
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</li>
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<li><a href="api/cristallina.html#module-cristallina.analysis">cristallina.analysis</a>
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</li>
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<li><a href="api/cristallina.html#module-cristallina.config">cristallina.config</a>
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</li>
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<li><a href="api/cristallina.html#module-cristallina.plot">cristallina.plot</a>
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</li>
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<li><a href="api/cristallina.html#module-cristallina.SEA_GraphClient">cristallina.SEA_GraphClient</a>
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</li>
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<li><a href="api/cristallina.html#module-cristallina.skeleton">cristallina.skeleton</a>
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</li>
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<li><a href="api/cristallina.html#module-cristallina.utils">cristallina.utils</a>
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</li>
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</ul></li>
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</ul></td>
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</tr></table>
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<h2 id="P">P</h2>
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<table style="width: 100%" class="indextable genindextable"><tr>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="api/cristallina.html#cristallina.skeleton.parse_args">parse_args() (in module cristallina.skeleton)</a>
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</li>
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<li><a href="api/cristallina.html#cristallina.utils.photon_energy_from_wavelength">photon_energy_from_wavelength() (in module cristallina.utils)</a>
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</li>
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<li><a href="api/cristallina.html#cristallina.plot.plot_1d_channel">plot_1d_channel() (in module cristallina.plot)</a>
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</li>
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<li><a href="api/cristallina.html#cristallina.plot.plot_2d_channel">plot_2d_channel() (in module cristallina.plot)</a>
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</li>
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<li><a href="api/cristallina.html#cristallina.plot.plot_channel">plot_channel() (in module cristallina.plot)</a>
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</li>
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</ul></td>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="api/cristallina.html#cristallina.plot.plot_correlation">plot_correlation() (in module cristallina.plot)</a>
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</li>
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<li><a href="api/cristallina.html#cristallina.plot.plot_image_channel">plot_image_channel() (in module cristallina.plot)</a>
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</li>
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<li><a href="api/cristallina.html#cristallina.plot.plot_spectrum_channel">plot_spectrum_channel() (in module cristallina.plot)</a>
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</li>
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<li><a href="api/cristallina.html#cristallina.utils.print_run_info">print_run_info() (in module cristallina.utils)</a>
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</li>
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<li><a href="api/cristallina.html#cristallina.utils.process_run">process_run() (in module cristallina.utils)</a>
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</li>
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</ul></td>
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</tr></table>
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<h2 id="R">R</h2>
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<table style="width: 100%" class="indextable genindextable"><tr>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="api/cristallina.html#cristallina.SEA_GraphClient.raw_sics_client">raw_sics_client() (in module cristallina.SEA_GraphClient)</a>
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</li>
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<li><a href="api/cristallina.html#cristallina.utils.ROI">ROI (class in cristallina.utils)</a>
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</li>
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</ul></td>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="api/cristallina.html#cristallina.utils.ROI.rows">rows (cristallina.utils.ROI property)</a>
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</li>
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<li><a href="api/cristallina.html#cristallina.skeleton.run">run() (in module cristallina.skeleton)</a>
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</li>
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</ul></td>
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</tr></table>
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<h2 id="S">S</h2>
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<table style="width: 100%" class="indextable genindextable"><tr>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="api/cristallina.html#cristallina.utils.scan_info">scan_info() (in module cristallina.utils)</a>
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</li>
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<li><a href="api/cristallina.html#cristallina.analysis.setup_cachedirs">setup_cachedirs() (in module cristallina.analysis)</a>
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</li>
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</ul></td>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="api/cristallina.html#cristallina.skeleton.setup_logging">setup_logging() (in module cristallina.skeleton)</a>
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</li>
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<li><a href="api/cristallina.html#cristallina.SEA_GraphClient.sics_client">sics_client() (in module cristallina.SEA_GraphClient)</a>
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</li>
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<li><a href="api/cristallina.html#cristallina.utils.sigma_to_FWHM">sigma_to_FWHM() (in module cristallina.utils)</a>
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</li>
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</ul></td>
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</tr></table>
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<h2 id="W">W</h2>
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<table style="width: 100%" class="indextable genindextable"><tr>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="api/cristallina.html#cristallina.utils.wavelength_from_photon_energy">wavelength_from_photon_energy() (in module cristallina.utils)</a>
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</li>
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</ul></td>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="api/cristallina.html#cristallina.utils.ROI.width">width (cristallina.utils.ROI property)</a>
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</li>
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</ul></td>
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</tr></table>
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<h2 id="X">X</h2>
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<table style="width: 100%" class="indextable genindextable"><tr>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="api/cristallina.html#cristallina.utils.xray_transmission">xray_transmission() (in module cristallina.utils)</a>
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</li>
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</ul></td>
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</tr></table>
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</div>
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</div>
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</div>
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<div class="sphinxsidebar" role="navigation" aria-label="main navigation">
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<div class="sphinxsidebarwrapper">
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<h1 class="logo"><a href="index.html">cristallina</a></h1>
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<h3>Navigation</h3>
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<ul>
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<li class="toctree-l1"><a class="reference internal" href="readme.html">Overview</a></li>
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<li class="toctree-l1"><a class="reference internal" href="contributing.html">TODO</a></li>
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<li class="toctree-l1"><a class="reference internal" href="contributing.html#contributing">Contributing</a></li>
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<li class="toctree-l1"><a class="reference internal" href="license.html">License</a></li>
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<li class="toctree-l1"><a class="reference internal" href="authors.html">Authors</a></li>
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<li class="toctree-l1"><a class="reference internal" href="changelog.html">Changelog</a></li>
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<li class="toctree-l1"><a class="reference internal" href="api/modules.html">Module Reference</a></li>
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