194 lines
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194 lines
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HTML
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<!DOCTYPE html>
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<title>cristallina — cristallina 0.0.post1.dev53+g9be81e9.d20230129 documentation</title>
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<section id="cristallina">
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<h1>cristallina<a class="headerlink" href="#cristallina" title="Permalink to this heading">¶</a></h1>
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<div class="toctree-wrapper compound">
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<ul>
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<li class="toctree-l1"><a class="reference internal" href="cristallina.html">cristallina package</a><ul>
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<li class="toctree-l2"><a class="reference internal" href="cristallina.html#submodules">Submodules</a></li>
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<li class="toctree-l2"><a class="reference internal" href="cristallina.html#module-cristallina.SEA_GraphClient">cristallina.SEA_GraphClient module</a><ul>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.SEA_GraphClient.GraphClient"><code class="docutils literal notranslate"><span class="pre">GraphClient</span></code></a><ul>
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<li class="toctree-l4"><a class="reference internal" href="cristallina.html#cristallina.SEA_GraphClient.GraphClient.close"><code class="docutils literal notranslate"><span class="pre">GraphClient.close()</span></code></a></li>
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<li class="toctree-l4"><a class="reference internal" href="cristallina.html#cristallina.SEA_GraphClient.GraphClient.get_curves"><code class="docutils literal notranslate"><span class="pre">GraphClient.get_curves()</span></code></a></li>
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<li class="toctree-l4"><a class="reference internal" href="cristallina.html#cristallina.SEA_GraphClient.GraphClient.get_names"><code class="docutils literal notranslate"><span class="pre">GraphClient.get_names()</span></code></a></li>
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<li class="toctree-l4"><a class="reference internal" href="cristallina.html#cristallina.SEA_GraphClient.GraphClient.get_raw"><code class="docutils literal notranslate"><span class="pre">GraphClient.get_raw()</span></code></a></li>
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</ul>
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</li>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.SEA_GraphClient.expect_reply"><code class="docutils literal notranslate"><span class="pre">expect_reply()</span></code></a></li>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.SEA_GraphClient.raw_sics_client"><code class="docutils literal notranslate"><span class="pre">raw_sics_client()</span></code></a></li>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.SEA_GraphClient.sics_client"><code class="docutils literal notranslate"><span class="pre">sics_client()</span></code></a></li>
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</ul>
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</li>
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<li class="toctree-l2"><a class="reference internal" href="cristallina.html#module-cristallina.analysis">cristallina.analysis module</a><ul>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.analysis.fit_2d_gaussian"><code class="docutils literal notranslate"><span class="pre">fit_2d_gaussian()</span></code></a></li>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.analysis.get_contrast_images"><code class="docutils literal notranslate"><span class="pre">get_contrast_images()</span></code></a></li>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.analysis.setup_cachedirs"><code class="docutils literal notranslate"><span class="pre">setup_cachedirs()</span></code></a></li>
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</ul>
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</li>
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<li class="toctree-l2"><a class="reference internal" href="cristallina.html#module-cristallina.config">cristallina.config module</a></li>
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<li class="toctree-l2"><a class="reference internal" href="cristallina.html#module-cristallina.plot">cristallina.plot module</a><ul>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.plot.axis_styling"><code class="docutils literal notranslate"><span class="pre">axis_styling()</span></code></a></li>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.plot.ju_patch_less_verbose"><code class="docutils literal notranslate"><span class="pre">ju_patch_less_verbose()</span></code></a></li>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.plot.plot_1d_channel"><code class="docutils literal notranslate"><span class="pre">plot_1d_channel()</span></code></a></li>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.plot.plot_2d_channel"><code class="docutils literal notranslate"><span class="pre">plot_2d_channel()</span></code></a></li>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.plot.plot_channel"><code class="docutils literal notranslate"><span class="pre">plot_channel()</span></code></a></li>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.plot.plot_correlation"><code class="docutils literal notranslate"><span class="pre">plot_correlation()</span></code></a></li>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.plot.plot_image_channel"><code class="docutils literal notranslate"><span class="pre">plot_image_channel()</span></code></a></li>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.plot.plot_spectrum_channel"><code class="docutils literal notranslate"><span class="pre">plot_spectrum_channel()</span></code></a></li>
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</ul>
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</li>
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<li class="toctree-l2"><a class="reference internal" href="cristallina.html#module-cristallina.skeleton">cristallina.skeleton module</a><ul>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.skeleton.fib"><code class="docutils literal notranslate"><span class="pre">fib()</span></code></a></li>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.skeleton.main"><code class="docutils literal notranslate"><span class="pre">main()</span></code></a></li>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.skeleton.parse_args"><code class="docutils literal notranslate"><span class="pre">parse_args()</span></code></a></li>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.skeleton.run"><code class="docutils literal notranslate"><span class="pre">run()</span></code></a></li>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.skeleton.setup_logging"><code class="docutils literal notranslate"><span class="pre">setup_logging()</span></code></a></li>
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</ul>
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</li>
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<li class="toctree-l2"><a class="reference internal" href="cristallina.html#module-cristallina.utils">cristallina.utils module</a><ul>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.utils.FWHM_to_sigma"><code class="docutils literal notranslate"><span class="pre">FWHM_to_sigma()</span></code></a></li>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.utils.ROI"><code class="docutils literal notranslate"><span class="pre">ROI</span></code></a><ul>
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<li class="toctree-l4"><a class="reference internal" href="cristallina.html#cristallina.utils.ROI.LeftRightBottomTop"><code class="docutils literal notranslate"><span class="pre">ROI.LeftRightBottomTop</span></code></a></li>
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<li class="toctree-l4"><a class="reference internal" href="cristallina.html#cristallina.utils.ROI.cols"><code class="docutils literal notranslate"><span class="pre">ROI.cols</span></code></a></li>
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<li class="toctree-l4"><a class="reference internal" href="cristallina.html#cristallina.utils.ROI.from_centers_widths"><code class="docutils literal notranslate"><span class="pre">ROI.from_centers_widths()</span></code></a></li>
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<li class="toctree-l4"><a class="reference internal" href="cristallina.html#cristallina.utils.ROI.height"><code class="docutils literal notranslate"><span class="pre">ROI.height</span></code></a></li>
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<li class="toctree-l4"><a class="reference internal" href="cristallina.html#cristallina.utils.ROI.rows"><code class="docutils literal notranslate"><span class="pre">ROI.rows</span></code></a></li>
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<li class="toctree-l4"><a class="reference internal" href="cristallina.html#cristallina.utils.ROI.width"><code class="docutils literal notranslate"><span class="pre">ROI.width</span></code></a></li>
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</ul>
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</li>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.utils.channel_names"><code class="docutils literal notranslate"><span class="pre">channel_names()</span></code></a></li>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.utils.eV_to_joules"><code class="docutils literal notranslate"><span class="pre">eV_to_joules()</span></code></a></li>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.utils.find_nearest"><code class="docutils literal notranslate"><span class="pre">find_nearest()</span></code></a></li>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.utils.find_two_nearest"><code class="docutils literal notranslate"><span class="pre">find_two_nearest()</span></code></a></li>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.utils.gauss"><code class="docutils literal notranslate"><span class="pre">gauss()</span></code></a></li>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.utils.gauss_fit"><code class="docutils literal notranslate"><span class="pre">gauss_fit()</span></code></a></li>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.utils.heuristic_extract_base_path"><code class="docutils literal notranslate"><span class="pre">heuristic_extract_base_path()</span></code></a></li>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.utils.heuristic_extract_pgroup"><code class="docutils literal notranslate"><span class="pre">heuristic_extract_pgroup()</span></code></a></li>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.utils.heuristic_extract_smalldata_path"><code class="docutils literal notranslate"><span class="pre">heuristic_extract_smalldata_path()</span></code></a></li>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.utils.joules_to_eV"><code class="docutils literal notranslate"><span class="pre">joules_to_eV()</span></code></a></li>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.utils.photon_energy_from_wavelength"><code class="docutils literal notranslate"><span class="pre">photon_energy_from_wavelength()</span></code></a></li>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.utils.print_run_info"><code class="docutils literal notranslate"><span class="pre">print_run_info()</span></code></a></li>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.utils.process_run"><code class="docutils literal notranslate"><span class="pre">process_run()</span></code></a></li>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.utils.scan_info"><code class="docutils literal notranslate"><span class="pre">scan_info()</span></code></a></li>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.utils.sigma_to_FWHM"><code class="docutils literal notranslate"><span class="pre">sigma_to_FWHM()</span></code></a></li>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.utils.wavelength_from_photon_energy"><code class="docutils literal notranslate"><span class="pre">wavelength_from_photon_energy()</span></code></a></li>
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<li class="toctree-l3"><a class="reference internal" href="cristallina.html#cristallina.utils.xray_transmission"><code class="docutils literal notranslate"><span class="pre">xray_transmission()</span></code></a></li>
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</ul>
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</li>
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<li class="toctree-l2"><a class="reference internal" href="cristallina.html#module-cristallina">Module contents</a></li>
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</ul>
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<h3>Navigation</h3>
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