cristallina_analysis_package/docs/_build/html/searchindex.js

Search.setIndex({"docnames": ["api/cristallina", "api/modules", "authors", "changelog", "contributing", "index", "license", "readme"], "filenames": ["api/cristallina.rst", "api/modules.rst", "authors.rst", "changelog.rst", "contributing.rst", "index.rst", "license.rst", "readme.rst"], "titles": ["cristallina package", "cristallina", "Contributors", "Changelog", "TODO", "cristallina", "License", "cristallina"], "terms": {"packag": [1, 4, 5], "submodul": 1, "sea_graphcli": 1, "modul": [1, 4, 5, 7], "analysi": [1, 7], "config": 1, "plot": [1, 7], "skeleton": 1, "util": [1, 7], "content": [1, 4], "alexand": 2, "steppk": 2, "psi": 2, "ch": 2, "featur": 4, "A": 0, "ad": [0, 4, 5], "fix": 4, "nasti": [], "bug": 4, "1729": [], "add": [0, 4, 5], "your": [0, 5], "chang": [], "here": [0, 7], "thi": [0, 4, 5], "i": [0, 3, 4, 5, 7], "suppos": 4, "TO": 4, "BE": 4, "exampl": [0, 3, 4], "modifi": 4, "IT": 4, "accord": 4, "need": [0, 4], "The": [0, 4, 5, 7], "assum": [0, 4], "you": [4, 5], "ar": [0, 4], "us": [0, 4, 5], "sourc": [0, 4], "servic": 4, "promot": 4, "model": 4, "similar": 4, "github": 4, "": [4, 5], "fork": 4, "pull": 4, "request": 4, "workflow": 4, "while": 4, "true": [0, 4], "major": 4, "like": 4, "gitlab": 4, "bitbucket": 4, "might": 4, "case": 4, "privat": 4, "e": [0, 4, 5], "g": [0, 4, 5], "when": [0, 4], "gerrit": 4, "also": [0, 4, 5], "notic": 4, "refer": [0, 4, 5], "url": 4, "text": [0, 4], "specif": 4, "terminologi": 4, "instead": [0, 4], "merg": 4, "pleas": 4, "make": 4, "sure": 4, "check": 4, "have": 4, "assumpt": 4, "mind": 4, "updat": 4, "thing": 4, "accordingli": 4, "provid": [4, 7], "correct": 4, "link": [4, 5], "replac": [0, 4], "bottom": [0, 4], "want": 4, "look": 4, "pyscaffold": 4, "contributor": [4, 5], "guid": 4, "especi": 4, "project": [4, 5], "open": [0, 4], "should": [0, 4], "veri": 4, "templat": [0, 4], "few": 4, "extra": [0, 4], "decid": 4, "includ": [4, 5], "mention": 4, "label": 4, "tracker": 4, "autom": 4, "gener": 4, "python": [0, 4, 5], "base": [0, 4, 7], "doe": 4, "yet": 4, "contain": [0, 4], "ani": 4, "cristallina": 4, "inform": [0, 4], "welcom": 4, "focus": 4, "get": [0, 4], "potenti": 4, "familiar": 4, "develop": 4, "process": [0, 4], "other": [4, 5], "kind": 4, "appreci": 4, "If": [0, 4], "new": 4, "git": 4, "never": 4, "collabor": 4, "previous": 4, "org": 4, "resourc": 4, "list": [0, 4], "excel": 4, "freecodecamp": 4, "1": [0, 4, 5], "all": [0, 4, 6], "user": 4, "expect": [0, 4], "consider": 4, "reason": 4, "respect": [4, 6], "doubt": 4, "softwar": 4, "foundat": 4, "conduct": 4, "good": 4, "term": 4, "behavior": 4, "guidelin": 4, "experi": 4, "don": 4, "t": [0, 4], "see": [0, 4], "anyth": 4, "feel": 4, "free": 4, "fire": 4, "forget": 4, "close": [0, 1, 4], "search": [4, 5], "sometim": 4, "solut": 4, "wa": 4, "alreadi": 4, "problem": 4, "consid": 4, "solv": 4, "about": 4, "program": 4, "oper": 4, "system": 4, "version": [4, 5], "step": [0, 4], "reproduc": 4, "try": 4, "simplifi": 4, "reproduct": 4, "minim": 4, "still": 4, "illustr": 4, "face": 4, "By": [0, 4, 5], "remov": [0, 4], "factor": 4, "help": [0, 4], "u": 4, "identifi": 4, "root": 4, "caus": 4, "can": [0, 4, 5], "doc": [4, 5], "them": [4, 5], "more": [4, 5], "readabl": 4, "coher": 4, "miss": 4, "mistak": 4, "sphinx": [4, 5], "its": 4, "main": [0, 1, 4, 5], "compil": 4, "mean": [0, 4], "kept": 4, "same": 4, "done": 4, "wai": 4, "which": [0, 4], "markup": 4, "languag": 4, "restructuredtext": [4, 5], "commonmark": 4, "myst": 4, "extens": [4, 5], "host": [0, 4], "follow": [0, 4], "tip": 4, "web": 4, "interfac": 4, "quick": [0, 4], "propos": 4, "file": [0, 4, 5], "mechan": 4, "tricki": 4, "normal": [0, 4], "work": [0, 4], "perfectli": 4, "fine": 4, "quit": 4, "handi": 4, "interest": [0, 4], "method": 4, "out": 4, "navig": 4, "folder": 4, "find": [0, 4], "would": 4, "click": 4, "littl": 4, "pencil": 4, "icon": 4, "top": [0, 4], "editor": 4, "onc": 4, "finish": 4, "edit": [0, 4], "write": 4, "messag": [0, 4], "form": 4, "page": [4, 5], "describ": 4, "made": 4, "what": 4, "motiv": 4, "behind": 4, "local": 4, "machin": [0, 4], "tox": 4, "built": 4, "server": [0, 4], "preview": [0, 4], "browser": 4, "http": [0, 4], "localhost": 4, "8000": 4, "python3": 4, "m": 4, "directori": [0, 4], "_build": 4, "html": [0, 4], "explan": 4, "intern": 4, "architectur": [4, 7], "descript": [0, 4], "design": 4, "principl": 4, "least": 4, "summari": 4, "concept": 4, "easi": 4, "start": [0, 4], "quickli": 4, "befor": 4, "non": [0, 4], "trivial": 4, "best": 4, "first": [0, 4], "discuss": 4, "subject": 4, "often": 4, "addit": [0, 4, 5], "avoid": 4, "unnecessari": 4, "we": [0, 4, 7], "recommend": [4, 5], "isol": 4, "virtual": 4, "instal": [0, 4], "easili": 4, "via": 4, "either": [0, 4, 7], "virtualenv": 4, "path": [0, 4], "venv": 4, "bin": 4, "activ": [4, 5], "miniconda": 4, "conda": 4, "n": [0, 4], "3": 4, "six": 4, "pytest": [4, 7], "cov": 4, "account": 4, "do": 4, "one": [0, 4], "button": 4, "copi": 4, "under": 4, "disk": 4, "com": [0, 4], "yourlogin": 4, "cd": 4, "run": [0, 1, 4], "pip": [0, 4], "setuptool": [0, 4], "abl": 4, "import": [0, 4], "repl": 4, "pre": 4, "commit": 4, "item": 4, "come": 4, "lot": 4, "hook": 4, "configur": [0, 4], "automat": 4, "being": 4, "written": [4, 5], "branch": 4, "hold": 4, "checkout": 4, "b": 4, "my": 4, "docstr": [4, 5], "function": [0, 3, 4, 7], "class": [0, 4], "thei": [0, 4], "part": 4, "public": 4, "api": 4, "yourself": 4, "author": [4, 5, 6], "rst": [4, 5], "re": [0, 4], "record": 4, "valid": 4, "from": [0, 4, 5], "eventu": 4, "flake8": 4, "black": 4, "style": [4, 5], "compat": 4, "unit": [0, 4], "test": [4, 7], "just": [0, 4], "bugfix": 4, "moreov": 4, "highli": 4, "In": 4, "histori": 4, "log": [0, 4], "graph": [0, 4], "decor": 4, "pretti": [4, 5], "onelin": 4, "abbrev": 4, "recur": 4, "commun": 4, "pattern": 4, "break": 4, "after": 4, "pipx": 4, "sever": 4, "av": 4, "avail": [4, 7], "everyth": 4, "push": 4, "origin": 4, "go": 4, "send": 4, "review": 4, "uncom": [0, 4], "paragraph": 4, "detail": 4, "pr": 4, "draft": 4, "mark": 4, "readi": 4, "feedback": 4, "continu": 4, "integr": 4, "ci": 4, "requir": [3, 4, 7], "build": 4, "fetch": 4, "tag": 4, "upstream": 4, "command": [0, 4], "0": [0, 4, 5], "return": [0, 4], "script": [0, 4], "egg": 4, "complet": 4, "well": 4, "info": 4, "src": 4, "depend": [0, 4], "setup": [0, 4], "cfg": [0, 4], "txt": 4, "recreat": 4, "r": 4, "flag": 4, "For": 4, "reliabl": 4, "7": 4, "OR": 4, "troubl": 4, "weird": 4, "error": 4, "upon": 4, "dedic": 4, "binari": 4, "freshli": 4, "drop": 4, "interact": 4, "session": 4, "occur": 4, "order": [4, 5], "pass": [0, 4], "pdb": 4, "option": [0, 4], "k": 4, "name": [0, 4], "OF": 4, "THE": 4, "fall": 4, "breakpoint": 4, "manual": 4, "section": [0, 4], "pypi": 4, "publicli": 4, "differ": 4, "index": [0, 4, 5], "instruct": 4, "group": [0, 4], "permiss": 4, "success": 4, "current": [0, 4], "v1": 4, "2": 4, "clean": 4, "up": 4, "dist": 4, "rm": 4, "rf": 4, "confus": 4, "old": 4, "dirti": 4, "hash": 4, "size": 4, "distribut": 4, "too": 4, "big": 4, "500kb": 4, "unwant": 4, "clutter": 4, "mai": [0, 4], "been": 4, "accident": 4, "publish": 4, "upload": 4, "correctli": 4, "even": 4, "though": 4, "focu": 4, "idea": 4, "collect": [4, 7], "appli": 4, "sort": 4, "compani": 4, "proprietari": 4, "definit": [0, 4], "document": [3, 5], "It": 5, "format": [0, 5], "creat": [0, 5], "toctre": 5, "below": 5, "changelog": 5, "possibl": 5, "domain": 5, "syntax": 5, "default": [0, 5], "numpi": 5, "scipi": 5, "matplotlib": [0, 5], "panda": 5, "scikit": 5, "learn": 5, "extend": 5, "intersphinx_map": 5, "conf": 5, "py": 5, "autodoc": 5, "let": 5, "googl": 5, "classic": 5, "overview": [0, 5], "todo": 5, "contribut": 5, "issu": 5, "report": 5, "improv": 5, "code": [5, 6], "maintain": 5, "task": 5, "licens": 5, "No": 6, "explicit": 6, "given": [0, 6], "belong": 6, "data": [0, 7], "endstat": 7, "common": 7, "swissfel": 7, "convien": 7, "access": 7, "sf_datafil": 7, "suit": 7, "some": [3, 7], "onli": [0, 7], "consol": [0, 7], "ra": 7, "cluster": 7, "basic": [0, 3], "implement": 3, "notebook": 3, "client": 0, "sea": 0, "graphserv": 0, "usag": 0, "samenv": 0, "port": 0, "8764": 0, "number": 0, "retriv": 0, "graphclient": [0, 1], "curv": 0, "tlist": 0, "vlist": 0, "period": 0, "get_curv": [0, 1], "end": 0, "where": 0, "interv": 0, "unix": 0, "time": 0, "retriev": 0, "result": 0, "dict": 0, "axi": 0, "valu": 0, "y": 0, "resolut": 0, "hint": 0, "graphic": 0, "sai": 0, "significantli": 0, "bigger": 0, "than": 0, "an": 0, "point": 0, "hostport": 0, "object": 0, "none": 0, "none_valu": 0, "nmax": 0, "posit": 0, "taken": 0, "rel": 0, "singl": 0, "shown": 0, "gui": 0, "defin": 0, "max": 0, "per": 0, "string": 0, "get_nam": [0, 1], "properti": 0, "displai": 0, "get_raw": [0, 1], "arg": 0, "raw": 0, "expect_repli": [0, 1], "sock": 0, "raw_sics_cli": [0, 1], "login": 0, "sics_client": [0, 1], "spy": 0, "007": 0, "serv": 0, "To": 0, "line": 0, "entry_point": 0, "console_script": 0, "fibonacci": 0, "Then": 0, "mode": 0, "insid": 0, "environ": 0, "besid": 0, "header": 0, "until": 0, "_logger": 0, "renam": 0, "safe": 0, "pypa": 0, "io": 0, "en": 0, "latest": 0, "userguid": 0, "stabl": 0, "pip_instal": 0, "fib": [0, 1], "paramet": 0, "int": 0, "integ": 0, "th": 0, "type": 0, "wrapper": 0, "allow": 0, "call": 0, "argument": 0, "cli": 0, "fashion": 0, "print": 0, "stdout": 0, "nice": 0, "str": 0, "verbos": 0, "42": 0, "parse_arg": [0, 1], "pars": 0, "namespac": 0, "argpars": 0, "extract": 0, "sy": 0, "argv": 0, "entri": 0, "setup_log": [0, 1], "loglevel": 0, "minimum": 0, "emit": 0, "fit_2d_gaussian": [0, 1], "imag": 0, "roi": [0, 1], "2d": 0, "gaussian": 0, "fit": 0, "lmfit": 0, "region": 0, "x": 0, "coordin": 0, "center": 0, "further": 0, "statist": 0, "get_contrast_imag": [0, 1], "fileset": 0, "channel": 0, "jf16t03v01": 0, "alignment_channel": 0, "batch_siz": 0, "10": 0, "fals": 0, "perform_image_calcul": 0, "calcul": 0, "standard": 0, "deviat": 0, "set": 0, "setup_cachedir": [0, 1], "pgroup": 0, "cachedir": 0, "persist": 0, "cach": 0, "p": 0, "p20841": 0, "explicitli": 0, "heurist": 0, "fail": 0, "tmp": 0, "altern": 0, "axis_styl": [0, 1], "ax": 0, "channel_nam": [0, 1], "ju_patch_less_verbos": [0, 1], "ju_modul": 0, "monkei": 0, "patch": 0, "suppress": 0, "gain": 0, "pedest": 0, "searcher": 0, "plot_1d_channel": [0, 1], "sfdatafil": 0, "numer": 0, "puls": 0, "plot_2d_channel": [0, 1], "1d": 0, "arrai": 0, "plot_channel": [0, 1], "plot_correl": [0, 1], "ax_kwarg": 0, "correl": 0, "scatterplot": 0, "figur": 0, "coeffici": 0, "between": 0, "plot_image_channel": [0, 1], "norm": 0, "plot_spectrum_channel": [0, 1], "channel_name_x": 0, "channel_name_i": 0, "averag": 0, "two": 0, "constant": 0, "second": 0, "take": 0, "over": 0, "individu": 0, "fwhm_to_sigma": [0, 1], "fwhm": 0, "sigma": 0, "left": 0, "right": 0, "center_x": 0, "center_i": 0, "width": [0, 1], "height": [0, 1], "20": 0, "100": 0, "200": 0, "direct": 0, "lower": 0, "corner": 0, "leftrightbottomtop": [0, 1], "col": [0, 1], "from_centers_width": [0, 1], "row": [0, 1], "run_numb": 0, "scan": 0, "ev_to_joul": [0, 1], "ev": 0, "convers": 0, "find_nearest": [0, 1], "nearest": 0, "find_two_nearest": [0, 1], "time_arrai": 0, "percentag": 0, "indec": 0, "gauss": [0, 1], "h": 0, "x0": 0, "gauss_fit": [0, 1], "fit_detail": 0, "baseline_offset": 0, "amplitud": 0, "heuristic_extract_base_path": [0, 1], "tri": 0, "guess": 0, "full": 0, "save": 0, "heuristic_extract_pgroup": [0, 1], "heuristic_extract_smalldata_path": [0, 1], "small": 0, "joules_to_ev": [0, 1], "joul": 0, "photon_energy_from_wavelength": [0, 1], "wavelength": 0, "photon": 0, "energi": 0, "meter": 0, "www": 0, "kmlab": 0, "print_run_info": [0, 1], "print_channel": 0, "extra_verbos": 0, "base_path": 0, "output": 0, "pid": 0, "process_run": [0, 1], "detector": 0, "only_shot": 0, "slice": 0, "n_job": 0, "16": 0, "small_data": 0, "sum": 0, "std": 0, "img": 0, "scan_info": [0, 1], "sfscaninfo": 0, "load": 0, "sigma_to_fwhm": [0, 1], "wavelength_from_photon_energi": [0, 1], "eph": 0, "xray_transmiss": [0, 1], "thick": 0, "materi": 0, "si": 0, "densiti": 0, "rai": 0, "tranmiss": 0, "element": 0, "anoth": 0}, "objects": {"": [[0, 0, 0, "-", "cristallina"]], "cristallina": [[0, 0, 0, "-", "SEA_GraphClient"], [0, 0, 0, "-", "analysis"], [0, 0, 0, "-", "config"], [0, 0, 0, "-", "plot"], [0, 0, 0, "-", "skeleton"], [0, 0, 0, "-", "utils"]], "cristallina.SEA_GraphClient": [[0, 1, 1, "", "GraphClient"], [0, 3, 1, "", "expect_reply"], [0, 3, 1, "", "raw_sics_client"], [0, 3, 1, "", "sics_client"]], "cristallina.SEA_GraphClient.GraphClient": [[0, 2, 1, "", "close"], [0, 2, 1, "", "get_curves"], [0, 2, 1, "", "get_names"], [0, 2, 1, "", "get_raw"]], "cristallina.analysis": [[0, 3, 1, "", "fit_2d_gaussian"], [0, 3, 1, "", "get_contrast_images"], [0, 3, 1, "", "setup_cachedirs"]], "cristallina.plot": [[0, 3, 1, "", "axis_styling"], [0, 3, 1, "", "ju_patch_less_verbose"], [0, 3, 1, "", "plot_1d_channel"], [0, 3, 1, "", "plot_2d_channel"], [0, 3, 1, "", "plot_channel"], [0, 3, 1, "", "plot_correlation"], [0, 3, 1, "", "plot_image_channel"], [0, 3, 1, "", "plot_spectrum_channel"]], "cristallina.skeleton": [[0, 3, 1, "", "fib"], [0, 3, 1, "", "main"], [0, 3, 1, "", "parse_args"], [0, 3, 1, "", "run"], [0, 3, 1, "", "setup_logging"]], "cristallina.utils": [[0, 3, 1, "", "FWHM_to_sigma"], [0, 1, 1, "", "ROI"], [0, 3, 1, "", "channel_names"], [0, 3, 1, "", "eV_to_joules"], [0, 3, 1, "", "find_nearest"], [0, 3, 1, "", "find_two_nearest"], [0, 3, 1, "", "gauss"], [0, 3, 1, "", "gauss_fit"], [0, 3, 1, "", "heuristic_extract_base_path"], [0, 3, 1, "", "heuristic_extract_pgroup"], [0, 3, 1, "", "heuristic_extract_smalldata_path"], [0, 3, 1, "", "joules_to_eV"], [0, 3, 1, "", "photon_energy_from_wavelength"], [0, 3, 1, "", "print_run_info"], [0, 3, 1, "", "process_run"], [0, 3, 1, "", "scan_info"], [0, 3, 1, "", "sigma_to_FWHM"], [0, 3, 1, "", "wavelength_from_photon_energy"], [0, 3, 1, "", "xray_transmission"]], "cristallina.utils.ROI": [[0, 4, 1, "", "LeftRightBottomTop"], [0, 4, 1, "", "cols"], [0, 2, 1, "", "from_centers_widths"], [0, 4, 1, "", "height"], [0, 4, 1, "", "rows"], [0, 4, 1, "", "width"]]}, "objtypes": {"0": "py:module", "1": "py:class", "2": "py:method", "3": "py:function", "4": "py:property"}, "objnames": {"0": ["py", "module", "Python module"], "1": ["py", "class", "Python class"], "2": ["py", "method", "Python method"], "3": ["py", "function", "Python function"], "4": ["py", "property", "Python property"]}, "titleterms": {"cristallina": [0, 1, 5, 7], "packag": 0, "submodul": 0, "sea_graphcli": 0, "modul": 0, "analysi": 0, "config": 0, "plot": 0, "skeleton": 0, "util": 0, "content": [0, 5], "contributor": 2, "changelog": 3, "version": 3, "0": 3, "1": 3, "todo": 4, "contribut": 4, "issu": 4, "report": 4, "document": 4, "improv": 4, "code": 4, "submit": 4, "an": 4, "creat": 4, "environ": 4, "clone": 4, "repositori": 4, "implement": 4, "your": 4, "chang": 4, "troubleshoot": 4, "maintain": 4, "task": 4, "releas": 4, "indic": 5, "tabl": 5, "licens": 6}, "envversion": {"sphinx.domains.c": 2, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 8, "sphinx.domains.index": 1, "sphinx.domains.javascript": 2, "sphinx.domains.math": 2, "sphinx.domains.python": 3, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.intersphinx": 1, "sphinx.ext.todo": 2, "sphinx.ext.viewcode": 1, "sphinx": 57}, "alltitles": {"Contributors": [[2, "contributors"]], "Changelog": [[3, "changelog"]], "Version 0.1": [[3, "version-0-1"]], "Todo": [[4, "id1"], [4, "id2"], [4, "id3"], [4, "id5"], [4, "id6"], [4, "id7"], [4, "id8"], [4, "id9"], [4, "id10"], [4, "id11"], [4, "id12"]], "TODO": [[4, "todo"]], "Contributing": [[4, "contributing"]], "Issue Reports": [[4, "issue-reports"]], "Documentation Improvements": [[4, "documentation-improvements"]], "Code Contributions": [[4, "code-contributions"]], "Submit an issue": [[4, "submit-an-issue"]], "Create an environment": [[4, "create-an-environment"]], "Clone the repository": [[4, "clone-the-repository"]], "Implement your changes": [[4, "implement-your-changes"]], "Submit your contribution": [[4, "submit-your-contribution"]], "Troubleshooting": [[4, "troubleshooting"]], "Maintainer tasks": [[4, "maintainer-tasks"]], "Releases": [[4, "releases"]], "cristallina": [[5, "cristallina"], [7, "cristallina"], [1, "cristallina"]], "Contents": [[5, "contents"]], "Indices and tables": [[5, "indices-and-tables"]], "License": [[6, "license"]], "cristallina package": [[0, "cristallina-package"]], "Submodules": [[0, "submodules"]], "cristallina.SEA_GraphClient module": [[0, "module-cristallina.SEA_GraphClient"]], "cristallina.analysis module": [[0, "module-cristallina.analysis"]], "cristallina.config module": [[0, "module-cristallina.config"]], "cristallina.plot module": [[0, "module-cristallina.plot"]], "cristallina.skeleton module": [[0, "module-cristallina.skeleton"]], "cristallina.utils module": [[0, "module-cristallina.utils"]], "Module contents": [[0, "module-cristallina"]]}, "indexentries": {"fwhm_to_sigma() (in module cristallina.utils)": [[0, "cristallina.utils.FWHM_to_sigma"]], "graphclient (class in cristallina.sea_graphclient)": [[0, "cristallina.SEA_GraphClient.GraphClient"]], "leftrightbottomtop (cristallina.utils.roi property)": [[0, "cristallina.utils.ROI.LeftRightBottomTop"]], "roi (class in cristallina.utils)": [[0, "cristallina.utils.ROI"]], "axis_styling() (in module cristallina.plot)": [[0, "cristallina.plot.axis_styling"]], "channel_names() (in module cristallina.utils)": [[0, "cristallina.utils.channel_names"]], "close() (cristallina.sea_graphclient.graphclient method)": [[0, "cristallina.SEA_GraphClient.GraphClient.close"]], "cols (cristallina.utils.roi property)": [[0, "cristallina.utils.ROI.cols"]], "cristallina": [[0, "module-cristallina"]], "cristallina.sea_graphclient": [[0, "module-cristallina.SEA_GraphClient"]], "cristallina.analysis": [[0, "module-cristallina.analysis"]], "cristallina.config": [[0, "module-cristallina.config"]], "cristallina.plot": [[0, "module-cristallina.plot"]], "cristallina.skeleton": [[0, "module-cristallina.skeleton"]], "cristallina.utils": [[0, "module-cristallina.utils"]], "ev_to_joules() (in module cristallina.utils)": [[0, "cristallina.utils.eV_to_joules"]], "expect_reply() (in module cristallina.sea_graphclient)": [[0, "cristallina.SEA_GraphClient.expect_reply"]], "fib() (in module cristallina.skeleton)": [[0, "cristallina.skeleton.fib"]], "find_nearest() (in module cristallina.utils)": [[0, "cristallina.utils.find_nearest"]], "find_two_nearest() (in module cristallina.utils)": [[0, "cristallina.utils.find_two_nearest"]], "fit_2d_gaussian() (in module cristallina.analysis)": [[0, "cristallina.analysis.fit_2d_gaussian"]], "from_centers_widths() (cristallina.utils.roi method)": [[0, "cristallina.utils.ROI.from_centers_widths"]], "gauss() (in module cristallina.utils)": [[0, "cristallina.utils.gauss"]], "gauss_fit() (in module cristallina.utils)": [[0, "cristallina.utils.gauss_fit"]], "get_contrast_images() (in module cristallina.analysis)": [[0, "cristallina.analysis.get_contrast_images"]], "get_curves() (cristallina.sea_graphclient.graphclient method)": [[0, "cristallina.SEA_GraphClient.GraphClient.get_curves"]], "get_names() (cristallina.sea_graphclient.graphclient method)": [[0, "cristallina.SEA_GraphClient.GraphClient.get_names"]], "get_raw() (cristallina.sea_graphclient.graphclient method)": [[0, "cristallina.SEA_GraphClient.GraphClient.get_raw"]], "height (cristallina.utils.roi property)": [[0, "cristallina.utils.ROI.height"]], "heuristic_extract_base_path() (in module cristallina.utils)": [[0, "cristallina.utils.heuristic_extract_base_path"]], "heuristic_extract_pgroup() (in module cristallina.utils)": [[0, "cristallina.utils.heuristic_extract_pgroup"]], "heuristic_extract_smalldata_path() (in module cristallina.utils)": [[0, "cristallina.utils.heuristic_extract_smalldata_path"]], "joules_to_ev() (in module cristallina.utils)": [[0, "cristallina.utils.joules_to_eV"]], "ju_patch_less_verbose() (in module cristallina.plot)": [[0, "cristallina.plot.ju_patch_less_verbose"]], "main() (in module cristallina.skeleton)": [[0, "cristallina.skeleton.main"]], "module": [[0, "module-cristallina"], [0, "module-cristallina.SEA_GraphClient"], [0, "module-cristallina.analysis"], [0, "module-cristallina.config"], [0, "module-cristallina.plot"], [0, "module-cristallina.skeleton"], [0, "module-cristallina.utils"]], "parse_args() (in module cristallina.skeleton)": [[0, "cristallina.skeleton.parse_args"]], "photon_energy_from_wavelength() (in module cristallina.utils)": [[0, "cristallina.utils.photon_energy_from_wavelength"]], "plot_1d_channel() (in module cristallina.plot)": [[0, "cristallina.plot.plot_1d_channel"]], "plot_2d_channel() (in module cristallina.plot)": [[0, "cristallina.plot.plot_2d_channel"]], "plot_channel() (in module cristallina.plot)": [[0, "cristallina.plot.plot_channel"]], "plot_correlation() (in module cristallina.plot)": [[0, "cristallina.plot.plot_correlation"]], "plot_image_channel() (in module cristallina.plot)": [[0, "cristallina.plot.plot_image_channel"]], "plot_spectrum_channel() (in module cristallina.plot)": [[0, "cristallina.plot.plot_spectrum_channel"]], "print_run_info() (in module cristallina.utils)": [[0, "cristallina.utils.print_run_info"]], "process_run() (in module cristallina.utils)": [[0, "cristallina.utils.process_run"]], "raw_sics_client() (in module cristallina.sea_graphclient)": [[0, "cristallina.SEA_GraphClient.raw_sics_client"]], "rows (cristallina.utils.roi property)": [[0, "cristallina.utils.ROI.rows"]], "run() (in module cristallina.skeleton)": [[0, "cristallina.skeleton.run"]], "scan_info() (in module cristallina.utils)": [[0, "cristallina.utils.scan_info"]], "setup_cachedirs() (in module cristallina.analysis)": [[0, "cristallina.analysis.setup_cachedirs"]], "setup_logging() (in module cristallina.skeleton)": [[0, "cristallina.skeleton.setup_logging"]], "sics_client() (in module cristallina.sea_graphclient)": [[0, "cristallina.SEA_GraphClient.sics_client"]], "sigma_to_fwhm() (in module cristallina.utils)": [[0, "cristallina.utils.sigma_to_FWHM"]], "wavelength_from_photon_energy() (in module cristallina.utils)": [[0, "cristallina.utils.wavelength_from_photon_energy"]], "width (cristallina.utils.roi property)": [[0, "cristallina.utils.ROI.width"]], "xray_transmission() (in module cristallina.utils)": [[0, "cristallina.utils.xray_transmission"]]}})