Cristallina/cristallina_analysis_package
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Upper cut threshold added to perform image calculations

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vonka_j
2025-04-02 04:18:10 +02:00
parent 3ad42521f9
commit 0f23e462a8
1 changed files with 3 additions and 0 deletions
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3
src/cristallina/analysis.py
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@@ -68,6 +68,7 @@ def perform_image_calculations(
preview=False, preview=False,
operations=["sum"], operations=["sum"],
lower_cutoff_threshold=None, lower_cutoff_threshold=None,
upper_cutoff_threshold=None,
): ):
""" """
Performs one or more calculations ("sum", "mean" or "std") for a given region of interest (roi) Performs one or more calculations ("sum", "mean" or "std") for a given region of interest (roi)
@@ -115,6 +116,8 @@ def perform_image_calculations(
# use cutoff to set values to 0 below # use cutoff to set values to 0 below
if lower_cutoff_threshold is not None: if lower_cutoff_threshold is not None:
im_ROI = np.where(im_ROI < lower_cutoff_threshold, 0, im_ROI) im_ROI = np.where(im_ROI < lower_cutoff_threshold, 0, im_ROI)
if upper_cutoff_threshold is not None:
im_ROI = np.where(im_ROI > upper_cutoff_threshold, 0, im_ROI)
# iterate over all operations # iterate over all operations
for op in operations: for op in operations: