Spencer Bliven
f529f11f58
Breaking change: Remove '2' from default worker paths. Pulling this change into old installations that still us `cryosparc2_worker` in the path will temporarily break the worker. To fix, run `dev/update_version.sh` followed by `./connect_all.sh`. - new dev/update_versions.sh script to fix your config - use cryosparcm wrapper, which handles alternate CRYOSPARC_HOME correctly
40 lines
995 B
Bash
Executable File
40 lines
995 B
Bash
Executable File
#!/bin/bash
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# Connect all lanes to cryosparc
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# Path to cryosparcm binary
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# Defaults to the wrapper script, which validates the host and supports $CRYOSPARC_HOME
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: "${CRYOSPARCM:=/data/project/bio/software/cryoSPARC/v2/scripts/cryosparcm.sh}"
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if [[ ! -x "$CRYOSPARCM" ]]; then
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echo "ERROR: Unable to find cryosparcm at $CRYOSPARCM" >&2
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exit 1
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fi
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LANES=("gpu" "gpu-big" "gpu-short" "gpu-rtx2080ti" "cpu-daily")
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success=1
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for lane in "${LANES[@]}"; do
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cd "$lane"
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WORKER=$(sed -nE 's/.*"worker_bin_path" *: *"([^"]*)".*/\1/p' cluster_info.json)
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if [[ ! -x "$WORKER" ]]; then
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echo "ERROR: Worker $WORKER from lane $lane not found." >&2
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else
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echo "$CRYOSPARCM" cluster connect >&2
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"$CRYOSPARCM" cluster connect
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if [[ $? != 0 ]]; then
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echo "ERROR connecting $lane" >&2
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success=0
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fi
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echo >&2
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fi
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cd ..
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done
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if [[ $success == 0 ]]; then
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echo "Errors occured. See above." >&2
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exit 1
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fi
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