Update Slurm
29
Slurm.md
29
Slurm.md
@ -70,13 +70,32 @@ sleep 1m
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Some important options:
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```
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#SBATCH --mem=<size[units]>
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#SBATCH --mem-per-cpu=<size[units]>
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#SBATCH --cpus-per-task=<ncpus>
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#SBATCH --gpus=[<type>:]<number>
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#SBATCH --contraint=<Feature>
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#SBATCH --mem=<size[units]> : memory
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#SBATCH --mem-per-cpu=<size[units]> : memory per CPU
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#SBATCH --cpus-per-task=<ncpus> : cpus per task
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#SBATCH --gpus=[<type>:]<number> : GPUs
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#SBATCH --contraint=<Feature> : specific type of GPU
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```
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Example from Relion:
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```
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#SBATCH --job-name=r401profile-4gpu
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#SBATCH --partition=gpu
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#SBATCH --clusters=gmerlin6
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#SBATCH --gpus=4
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#SBATCH --nodes=1
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#SBATCH --mem-per-gpu 25600
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#SBATCH --ntasks=5
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#SBATCH --cpus-per-task=4
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#SBATCH --error=Refine3D/job038/run.err
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#SBATCH --output=Refine3D/job038/run.out
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#SBATCH --open-mode=append
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#SBATCH --time=1-00:00:00
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```
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### Cancelling jobs
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`scancel <jobid> --cluser=<cluster_name>`
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