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Update Slurm

assman_g
2024-06-10 13:14:04 +02:00
parent 698dd6bb0c
commit 703b8855cd
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Slurm.md

@ -70,13 +70,32 @@ sleep 1m
Some important options: Some important options:
``` ```
#SBATCH --mem=<size[units]> #SBATCH --mem=<size[units]> : memory
#SBATCH --mem-per-cpu=<size[units]> #SBATCH --mem-per-cpu=<size[units]> : memory per CPU
#SBATCH --cpus-per-task=<ncpus> #SBATCH --cpus-per-task=<ncpus> : cpus per task
#SBATCH --gpus=[<type>:]<number> #SBATCH --gpus=[<type>:]<number> : GPUs
#SBATCH --contraint=<Feature> #SBATCH --contraint=<Feature> : specific type of GPU
```
Example from Relion:
```
#SBATCH --job-name=r401profile-4gpu
#SBATCH --partition=gpu
#SBATCH --clusters=gmerlin6
#SBATCH --gpus=4
#SBATCH --nodes=1
#SBATCH --mem-per-gpu 25600
#SBATCH --ntasks=5
#SBATCH --cpus-per-task=4
#SBATCH --error=Refine3D/job038/run.err
#SBATCH --output=Refine3D/job038/run.out
#SBATCH --open-mode=append
#SBATCH --time=1-00:00:00
``` ```
### Cancelling jobs ### Cancelling jobs
`scancel <jobid> --cluser=<cluster_name>` `scancel <jobid> --cluser=<cluster_name>`