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Change computational env to include graphviz for workflow visualization

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florez_j
2025-06-07 20:02:41 +02:00
parent 457a2ae016
commit fda5099221
2 changed files with 2 additions and 0 deletions
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1
Dockerfile.acsmchain
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@ -39,6 +39,7 @@ RUN conda run -n $ENV_NAME pip install -r /acsmdc/requirements.txt
VOLUME ["/acsmdc/data", "/acsmdc/figures", "/acsmdc/pipelines/params"] VOLUME ["/acsmdc/data", "/acsmdc/figures", "/acsmdc/pipelines/params"]
# Add JupyterLab # Add JupyterLab
RUN pip install graphviz
RUN pip install --no-cache-dir jupyterlab RUN pip install --no-cache-dir jupyterlab
#RUN pip install pipx #RUN pip install pipx
#RUN pipx install renku #RUN pipx install renku

1
env_setup.sh
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@ -32,6 +32,7 @@ fi
echo "Installing additional pip packages..." echo "Installing additional pip packages..."
pip install pybis==1.35 igor2 ipykernel sphinx pip install pybis==1.35 igor2 ipykernel sphinx
pip install dash dash-bootstrap-components pip install dash dash-bootstrap-components
pip install graphviz
# Check if pip installations were successful # Check if pip installations were successful
if [ $? -ne 0 ]; then if [ $? -ne 0 ]; then