diff --git a/pipelines/params/calibration_factors.yaml b/pipelines/params/calibration_factors.yaml index 0718184..b535dd7 100644 --- a/pipelines/params/calibration_factors.yaml +++ b/pipelines/params/calibration_factors.yaml @@ -1,97 +1,98 @@ # Define common factors -factors: &factors - # Get values from data///config_acsm_.r, values used in Tofware analysis. - IE: 145.9 - ABRefWave: 254000 # TODO: verify if AB_ref in the config file is the same as ABRefWave - RIE_SO4: 0.63 - RIE_NH4: 3.495 - RIE_Org : 1.4 - # Get values from data///cal.csv - IE_correct: 145.9 - AB_ref_correct: 254000 - RIE_SO4_correct: 0.63 - RIE_NH4_correct: 3.495 - RIE_Org_correct : 1.4 - flow_ref_correct : 1.36 + +# Get values from data///config_acsm_.r, values used in Tofware analysis. +IE: &IE 145.9 +ABRefWave: &ABRefWave 254000 +RIE_SO4: &RIE_SO4 0.63 +RIE_NH4: &RIE_NH4 3.495 +RIE_Org: &RIE_Org 1.4 + +# Get values from data///cal.csv +IE_correct: &IE_correct 145.9 +AB_ref_correct: &AB_ref_correct 254000 +RIE_SO4_correct: &RIE_SO4_correct 0.63 +RIE_NH4_correct: &RIE_NH4_correct 3.495 +RIE_Org_correct: &RIE_Org_correct 1.4 +flow_ref_correct: &flow_ref_correct 1.36 # Define mappings for associated variables variables: # all_dat[, NO3_correct := (NO3_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)] NO3_11000: - num: [*factors.IE, *factors.AB_ref_correct] - den: [*factors.IE_correct, *factors.ABRefWave] + num: [*IE, *AB_ref_correct] + den: [*IE_correct, *ABRefWave] # all_dat[, SO4_correct := (SO4_11000 * IE * RIE_SO4 * AB_ref_correct) / (IE_correct * RIE_SO4_correct * ABRefWave)] SO4_11000: - num: [*factors.IE, *factors.RIE_SO4, *factors.AB_ref_correct] - den: [*factors.IE_correct, *factors.RIE_SO4_correct, *factors.ABRefWave] + num: [*IE, *RIE_SO4, *AB_ref_correct] + den: [*IE_correct, *RIE_SO4_correct, *ABRefWave] # all_dat[, NH4_correct := (NH4_11000 * IE * RIE_NH4 * AB_ref_correct) / (IE_correct * RIE_NH4_correct * ABRefWave)] NH4_11000: - num: [*factors.IE, *factors.RIE_NH4, *factors.AB_ref_correct] - den: [*factors.IE_correct, *factors.RIE_NH4_correct, *factors.ABRefWave] + num: [*IE, *RIE_NH4, *AB_ref_correct] + den: [*IE_correct, *RIE_NH4_correct, *ABRefWave] # all_dat[, Org_correct := (Org_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)] Org_11000: - num: [*factors.IE, *factors.AB_ref_correct] - den: [*factors.IE_correct, *factors.ABRefWave] + num: [*IE, *AB_ref_correct] + den: [*IE_correct, *ABRefWave] # all_dat[, Chl_correct := (Chl_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)] Chl_11000: - num: [*factors.IE, *factors.AB_ref_correct] - den: [*factors.IE_correct, *factors.ABRefWave] + num: [*IE, *AB_ref_correct] + den: [*IE_correct, *ABRefWave] # all_dat[, Org_44_11000_correct := (Org_44_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)] Org_44_11000: - num: [*factors.IE, *factors.AB_ref_correct] - den: [*factors.IE_correct, *factors.ABRefWave] + num: [*IE, *AB_ref_correct] + den: [*IE_correct, *ABRefWave] # all_dat[, Org_43_11000_correct := (Org_43_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)] Org_43_11000: - num: [*factors.IE, *factors.AB_ref_correct] - den: [*factors.IE_correct, *factors.ABRefWave] + num: [*IE, *AB_ref_correct] + den: [*IE_correct, *ABRefWave] # all_dat[, Org_60_11000_correct := (Org_60_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)] Org_60_11000: - num: [*factors.IE, *factors.AB_ref_correct] - den: [*factors.IE_correct, *factors.ABRefWave] + num: [*IE, *AB_ref_correct] + den: [*IE_correct, *ABRefWave] # all_dat[, NO3_30_11000_correct := (NO3_30_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)] NO3_30_11000: - num: [*factors.IE, *factors.AB_ref_correct] - den: [*factors.IE_correct, *factors.ABRefWave] + num: [*IE, *AB_ref_correct] + den: [*IE_correct, *ABRefWave] # all_dat[, SO4_98_11000_correct := (SO4_98_11000 * IE * RIE_SO4 * AB_ref_correct) / (IE_correct * RIE_SO4_correct * ABRefWave)] SO4_98_11000: - num: [*factors.IE, *factors.RIE_SO4, *factors.AB_ref_correct] - den: [*factors.IE_correct, *factors.RIE_SO4_correct, *factors.ABRefWave] + num: [*IE, *RIE_SO4, *AB_ref_correct] + den: [*IE_correct, *RIE_SO4_correct, *ABRefWave] # all_dat[, SO4_81_11000_correct := (SO4_81_11000 * IE * RIE_SO4 * AB_ref_correct) / (IE_correct * RIE_SO4_correct * ABRefWave)] SO4_81_11000: - num: [*factors.IE, *factors.RIE_SO4, *factors.AB_ref_correct] - den: [*factors.IE_correct, *factors.RIE_SO4_correct, *factors.ABRefWave] + num: [*IE, *RIE_SO4, *AB_ref_correct] + den: [*IE_correct, *RIE_SO4_correct, *ABRefWave] # all_dat[, SO4_82_11000_correct := (SO4_82_11000 * IE * RIE_SO4 * AB_ref_correct) / (IE_correct * RIE_SO4_correct * ABRefWave)] SO4_82_11000: - num: [*factors.IE, *factors.RIE_SO4, *factors.AB_ref_correct] - den: [*factors.IE_correct, *factors.RIE_SO4_correct, *factors.ABRefWave] + num: [*IE, *RIE_SO4, *AB_ref_correct] + den: [*IE_correct, *RIE_SO4_correct, *ABRefWave] # all_dat[, SO4_62_11000_correct := (SO4_62_11000 * IE * RIE_SO4 * AB_ref_correct) / (IE_correct * RIE_SO4_correct * ABRefWave)] SO4_62_11000: - num: [*factors.IE, *factors.RIE_SO4, *factors.AB_ref_correct] - den: [*factors.IE_correct, *factors.RIE_SO4_correct, *factors.ABRefWave] + num: [*IE, *RIE_SO4, *AB_ref_correct] + den: [*IE_correct, *RIE_SO4_correct, *ABRefWave] # all_dat[, SO4_48_11000_correct := (SO4_48_11000 * IE * RIE_SO4 * AB_ref_correct) / (IE_correct * RIE_SO4_correct * ABRefWave)] SO4_48_11000: - num: [*factors.IE, *factors.RIE_SO4, *factors.AB_ref_correct] - den: [*factors.IE_correct, *factors.RIE_SO4_correct, *factors.ABRefWave] + num: [*IE, *RIE_SO4, *AB_ref_correct] + den: [*IE_correct, *RIE_SO4_correct, *ABRefWave]