diff --git a/pipelines/params/calibration_factors.yaml b/pipelines/params/calibration_factors.yaml index 4e5a21c..1c7e553 100644 --- a/pipelines/params/calibration_factors.yaml +++ b/pipelines/params/calibration_factors.yaml @@ -14,22 +14,22 @@ variables: # all_dat[, SO4_correct := (SO4_11000 * IE * RIE_SO4 * AB_ref_correct) / (IE_correct * RIE_SO4_correct * ABRefWave)] SO4_11000: num: ["IE_tofware", "RIE_SO4_tofware", "AB_ref_correct", "CE_tofware"] - den: ["IE_tofware", "RIE_SO4_correct", "ABRefWave_tofware", "CE_correct"] + den: ["IE_correct", "RIE_SO4_correct", "ABRefWave_tofware", "CE_correct"] # all_dat[, NH4_correct := (NH4_11000 * IE * RIE_NH4 * AB_ref_correct) / (IE_correct * RIE_NH4_correct * ABRefWave)] NH4_11000: num: ["IE_tofware", "RIE_NH4_tofware", "AB_ref_correct", "CE_tofware"] - den: ["IE_tofware", "RIE_NH4_correct", "ABRefWave_tofware", "CE_correct"] + den: ["IE_correct", "RIE_NH4_correct", "ABRefWave_tofware", "CE_correct"] # all_dat[, Org_correct := (Org_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)] Org_11000: num: ["IE_tofware", "RIE_Org_tofware", "AB_ref_correct", "CE_tofware"] - den: ["IE_tofware", "RIE_Org_correct", "ABRefWave_tofware", "CE_correct"] + den: ["IE_correct", "RIE_Org_correct", "ABRefWave_tofware", "CE_correct"] # all_dat[, Chl_correct := (Chl_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)] Chl_11000: num: ["IE_tofware", "RIE_Chl_tofware", "AB_ref_correct", "CE_tofware"] - den: ["IE_tofware", "RIE_Chl_correct", "ABRefWave_tofware", "CE_correct"] + den: ["IE_correct", "RIE_Chl_correct", "ABRefWave_tofware", "CE_correct"] # m/z levels columns are treated differently to those above @@ -37,54 +37,54 @@ variables: # all_dat[, Org_44_11000_correct := (Org_44_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)] Org_44_11000: num: ["IE_tofware", "RIE_Org_tofware", "AB_ref_correct", "CE_tofware"] - den: ["IE_tofware", "RIE_Org_correct", "ABRefWave_tofware", "CE_tofware", "RIE_Org_tofware", "CE_correct"] + den: ["IE_correct", "RIE_Org_correct", "ABRefWave_tofware", "CE_tofware", "RIE_Org_tofware", "CE_correct"] # all_dat[, Org_43_11000_correct := (Org_43_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)] Org_43_11000: num: ["IE_tofware", "RIE_Org_tofware", "AB_ref_correct", "CE_tofware"] - den: ["IE_tofware", "RIE_Org_correct", "ABRefWave_tofware", "CE_tofware", "RIE_Org_tofware", "CE_correct"] + den: ["IE_correct", "RIE_Org_correct", "ABRefWave_tofware", "CE_tofware", "RIE_Org_tofware", "CE_correct"] # all_dat[, Org_60_11000_correct := (Org_60_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)] Org_60_11000: num: ["IE_tofware", "RIE_Org_tofware", "AB_ref_correct", "CE_tofware"] - den: ["IE_tofware", "RIE_Org_correct", "ABRefWave_tofware", "CE_tofware", "RIE_Org_tofware", "CE_correct"] + den: ["IE_correct", "RIE_Org_correct", "ABRefWave_tofware", "CE_tofware", "RIE_Org_tofware", "CE_correct"] # all_dat[, NO3_30_11000_correct := (NO3_30_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)] NO3_30_11000: num: ["IE_tofware", "RIE_NO3_tofware", "AB_ref_correct", "CE_tofware"] - den: ["IE_tofware", "RIE_NO3_correct", "ABRefWave_tofware", "CE_tofware", "RIE_NO3_tofware", "CE_correct"] + den: ["IE_correct", "RIE_NO3_correct", "ABRefWave_tofware", "CE_tofware", "RIE_NO3_tofware", "CE_correct"] # all_dat[, SO4_98_11000_correct := (SO4_98_11000 * IE * RIE_SO4 * AB_ref_correct) / (IE_correct * RIE_SO4_correct * ABRefWave)] SO4_98_11000: num: ["IE_tofware", "RIE_SO4_tofware", "AB_ref_correct", "CE_tofware"] - den: ["IE_tofware", "RIE_SO4_correct", "ABRefWave_tofware", "CE_tofware", "RIE_SO4_tofware", "CE_correct"] + den: ["IE_correct", "RIE_SO4_correct", "ABRefWave_tofware", "CE_tofware", "RIE_SO4_tofware", "CE_correct"] # all_dat[, SO4_81_11000_correct := (SO4_81_11000 * IE * RIE_SO4 * AB_ref_correct) / (IE_correct * RIE_SO4_correct * ABRefWave)] SO4_81_11000: num: ["IE_tofware", "RIE_SO4_tofware", "AB_ref_correct", "CE_tofware"] - den: ["IE_tofware", "RIE_SO4_correct", "ABRefWave_tofware", "CE_tofware", "RIE_SO4_tofware", "CE_correct"] + den: ["IE_correct", "RIE_SO4_correct", "ABRefWave_tofware", "CE_tofware", "RIE_SO4_tofware", "CE_correct"] # all_dat[, SO4_82_11000_correct := (SO4_82_11000 * IE * RIE_SO4 * AB_ref_correct) / (IE_correct * RIE_SO4_correct * ABRefWave)] SO4_82_11000: num: ["IE_tofware", "RIE_SO4_tofware", "AB_ref_correct", "CE_tofware"] - den: ["IE_tofware", "RIE_SO4_correct", "ABRefWave_tofware", "CE_tofware", "RIE_SO4_tofware", "CE_correct"] + den: ["IE_correct", "RIE_SO4_correct", "ABRefWave_tofware", "CE_tofware", "RIE_SO4_tofware", "CE_correct"] # all_dat[, SO4_62_11000_correct := (SO4_62_11000 * IE * RIE_SO4 * AB_ref_correct) / (IE_correct * RIE_SO4_correct * ABRefWave)] SO4_62_11000: num: ["IE_tofware", "RIE_SO4_tofware", "AB_ref_correct", "CE_tofware"] - den: ["IE_tofware", "RIE_SO4_correct", "ABRefWave_tofware", "CE_tofware", "RIE_SO4_tofware", "CE_correct"] + den: ["IE_correct", "RIE_SO4_correct", "ABRefWave_tofware", "CE_tofware", "RIE_SO4_tofware", "CE_correct"] # all_dat[, SO4_48_11000_correct := (SO4_48_11000 * IE * RIE_SO4 * AB_ref_correct) / (IE_correct * RIE_SO4_correct * ABRefWave)] SO4_48_11000: num: ["IE_tofware", "RIE_SO4_tofware", "AB_ref_correct", "CE_tofware"] - den: ["IE_tofware", "RIE_SO4_correct", "ABRefWave_tofware", "CE_tofware", "RIE_SO4_tofware", "CE_correct"] + den: ["IE_correct", "RIE_SO4_correct", "ABRefWave_tofware", "CE_tofware", "RIE_SO4_tofware", "CE_correct"]