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Clean up notebooks

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florez_j
2025-03-18 08:53:51 +01:00
parent b0d68747e9
commit 862a2c46e6
3 changed files with 1040 additions and 193 deletions
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30
notebooks/demo_acsm_pipeline.ipynb
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@ -31,8 +31,8 @@
"for item in sys.path:\n", "for item in sys.path:\n",
" print(item)\n", " print(item)\n",
"\n", "\n",
"CAMPAIGN_DATA_FILE = \"../data/collection_JFJ_2024_2025-03-17_2025-02-17.h5\"\n", "CAMPAIGN_DATA_FILE = \"../data/collection_JFJ_2024_2025-03-14_2025-03-14.h5\"\n",
"APPEND_DATA_DIR = \"../data/collection_JFJ_2024_2025-03-17_2025-02-17\"" "APPEND_DATA_DIR = \"../data/collection_JFJ_2024_2025-03-14_2025-03-14\""
] ]
}, },
{ {
@ -79,6 +79,11 @@
"run_generate_flags(path_to_data_file, 'diagnostics')\n" "run_generate_flags(path_to_data_file, 'diagnostics')\n"
] ]
}, },
{
"cell_type": "markdown",
"metadata": {},
"source": []
},
{ {
"cell_type": "code", "cell_type": "code",
"execution_count": null, "execution_count": null,
@ -95,6 +100,27 @@
"run_generate_flags(path_to_data_file, 'species')" "run_generate_flags(path_to_data_file, 'species')"
] ]
}, },
{
"cell_type": "markdown",
"metadata": {},
"source": []
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from pipelines.steps.prepare_ebas_submission import main as run_prepare_ebas_submission \n",
"\n",
"PATH1=\"../data/collection_JFJ_2024_2025-03-14_2025-03-14/ACSM_TOFWARE_processed/2024/ACSM_JFJ_2024_timeseries_calibrated.csv\"\n",
"PATH2=\"../data/collection_JFJ_2024_2025-03-14_2025-03-14/ACSM_TOFWARE_processed/2024/ACSM_JFJ_2024_timeseries_calibrated_err.csv\"\n",
"PATH3=\"../data/collection_JFJ_2024_2025-03-14_2025-03-14/ACSM_TOFWARE_processed/2024/ACSM_JFJ_2024_timeseries_calibration_factors.csv\"\n",
"PATH4=\"../data/collection_JFJ_2024_2025-03-14_2025-03-14/ACSM_TOFWARE_flags/2024/ACSM_JFJ_2024_timeseries_flags.csv\"\n",
"month = 4\n",
"run_prepare_ebas_submission([PATH1,PATH2,PATH3], PATH4, month)"
]
},
{ {
"cell_type": "code", "cell_type": "code",
"execution_count": null, "execution_count": null,

1017
notebooks/demo_data_integration.ipynb
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186
notebooks/demo_visualize_diagnostic_flags_from_hdf5_file.ipynb
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