diff --git a/pipelines/params/calibration_factors.yaml b/pipelines/params/calibration_factors.yaml index af9ec1b..0097ad7 100644 --- a/pipelines/params/calibration_factors.yaml +++ b/pipelines/params/calibration_factors.yaml @@ -6,6 +6,11 @@ ABRefWave_tofware: &ABRefWave 254000 RIE_SO4_tofware: &RIE_SO4 0.63 RIE_NH4_tofware: &RIE_NH4 3.495 RIE_Org_tofware: &RIE_Org 1.4 +RIE_NO3_tofware: &RIE_NO3 1.05 +RIE_Chl_tofware: &RIE_Chl 1.0 +CE_tofware: &CE 1.0 +flow_ref_tofware: &flow_ref 1.36 + # Get values from data///cal.csv IE_correct: &IE_correct 145.9 @@ -13,86 +18,92 @@ AB_ref_correct: &AB_ref_correct 254000 RIE_SO4_correct: &RIE_SO4_correct 0.63 RIE_NH4_correct: &RIE_NH4_correct 3.495 RIE_Org_correct: &RIE_Org_correct 1.4 +RIE_NO3_correct: &RIE_NO3_correct 1.05 +RIE_Chl_correct: &RIE_Chl_correct 1.0 +CE_correct: &CE_correct 1.0 flow_ref_correct: &flow_ref_correct 1.36 # Define mappings for associated variables variables: # all_dat[, NO3_correct := (NO3_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)] NO3_11000: - num: [*IE, *AB_ref_correct] - den: [*IE_correct, *ABRefWave] + num: [*IE, *RIE_NO3, *AB_ref_correct, *CE] + den: [*IE_correct, *RIE_NO3_correct, *ABRefWave, *CE_correct] # all_dat[, SO4_correct := (SO4_11000 * IE * RIE_SO4 * AB_ref_correct) / (IE_correct * RIE_SO4_correct * ABRefWave)] SO4_11000: - num: [*IE, *RIE_SO4, *AB_ref_correct] - den: [*IE_correct, *RIE_SO4_correct, *ABRefWave] + num: [*IE, *RIE_SO4, *AB_ref_correct, *CE] + den: [*IE_correct, *RIE_SO4_correct, *ABRefWave, *CE_correct] # all_dat[, NH4_correct := (NH4_11000 * IE * RIE_NH4 * AB_ref_correct) / (IE_correct * RIE_NH4_correct * ABRefWave)] NH4_11000: - num: [*IE, *RIE_NH4, *AB_ref_correct] - den: [*IE_correct, *RIE_NH4_correct, *ABRefWave] + num: [*IE, *RIE_NH4, *AB_ref_correct, *CE] + den: [*IE_correct, *RIE_NH4_correct, *ABRefWave, *CE_correct] # all_dat[, Org_correct := (Org_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)] Org_11000: - num: [*IE, *AB_ref_correct] - den: [*IE_correct, *ABRefWave] + num: [*IE, *RIE_Org, *AB_ref_correct, *CE] + den: [*IE_correct, *RIE_Org_correct, *ABRefWave, *CE_correct] # all_dat[, Chl_correct := (Chl_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)] Chl_11000: - num: [*IE, *AB_ref_correct] - den: [*IE_correct, *ABRefWave] + num: [*IE, *RIE_Chl, *AB_ref_correct, *CE] + den: [*IE_correct, *RIE_Chl_correct, *ABRefWave, *CE_correct] + + +# m/z levels columns are treated differently to those above # all_dat[, Org_44_11000_correct := (Org_44_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)] Org_44_11000: - num: [*IE, *AB_ref_correct] - den: [*IE_correct, *ABRefWave] + num: [*IE, *RIE_Org, *AB_ref_correct, *CE] + den: [*IE_correct, *RIE_Org_correct, *ABRefWave, *CE, *RIE_Org, *CE_correct] # all_dat[, Org_43_11000_correct := (Org_43_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)] Org_43_11000: - num: [*IE, *AB_ref_correct] - den: [*IE_correct, *ABRefWave] + num: [*IE, *RIE_Org, *AB_ref_correct, *CE] + den: [*IE_correct, *RIE_Org_correct, *ABRefWave, *CE, *RIE_Org, *CE_correct] # all_dat[, Org_60_11000_correct := (Org_60_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)] Org_60_11000: - num: [*IE, *AB_ref_correct] - den: [*IE_correct, *ABRefWave] + num: [*IE, *RIE_Org, *AB_ref_correct, *CE] + den: [*IE_correct, *RIE_Org_correct, *ABRefWave, *CE, *RIE_Org, *CE_correct] # all_dat[, NO3_30_11000_correct := (NO3_30_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)] NO3_30_11000: - num: [*IE, *AB_ref_correct] - den: [*IE_correct, *ABRefWave] + num: [*IE, *RIE_NO3, *AB_ref_correct, *CE] + den: [*IE_correct, *RIE_NO3_correct, *ABRefWave, *CE, *RIE_NO3, *CE_correct] # all_dat[, SO4_98_11000_correct := (SO4_98_11000 * IE * RIE_SO4 * AB_ref_correct) / (IE_correct * RIE_SO4_correct * ABRefWave)] SO4_98_11000: - num: [*IE, *RIE_SO4, *AB_ref_correct] - den: [*IE_correct, *RIE_SO4_correct, *ABRefWave] + num: [*IE, *RIE_SO4, *AB_ref_correct, *CE] + den: [*IE_correct, *RIE_SO4_correct, *ABRefWave, *CE, *RIE_SO4, *CE_correct] # all_dat[, SO4_81_11000_correct := (SO4_81_11000 * IE * RIE_SO4 * AB_ref_correct) / (IE_correct * RIE_SO4_correct * ABRefWave)] SO4_81_11000: - num: [*IE, *RIE_SO4, *AB_ref_correct] - den: [*IE_correct, *RIE_SO4_correct, *ABRefWave] + num: [*IE, *RIE_SO4, *AB_ref_correct, *CE] + den: [*IE_correct, *RIE_SO4_correct, *ABRefWave, *CE, *RIE_SO4, *CE_correct] # all_dat[, SO4_82_11000_correct := (SO4_82_11000 * IE * RIE_SO4 * AB_ref_correct) / (IE_correct * RIE_SO4_correct * ABRefWave)] SO4_82_11000: - num: [*IE, *RIE_SO4, *AB_ref_correct] - den: [*IE_correct, *RIE_SO4_correct, *ABRefWave] + num: [*IE, *RIE_SO4, *AB_ref_correct, *CE] + den: [*IE_correct, *RIE_SO4_correct, *ABRefWave, *CE, *RIE_SO4, *CE_correct] # all_dat[, SO4_62_11000_correct := (SO4_62_11000 * IE * RIE_SO4 * AB_ref_correct) / (IE_correct * RIE_SO4_correct * ABRefWave)] SO4_62_11000: - num: [*IE, *RIE_SO4, *AB_ref_correct] - den: [*IE_correct, *RIE_SO4_correct, *ABRefWave] + num: [*IE, *RIE_SO4, *AB_ref_correct, *CE] + den: [*IE_correct, *RIE_SO4_correct, *ABRefWave, *CE, *RIE_SO4, *CE_correct] # all_dat[, SO4_48_11000_correct := (SO4_48_11000 * IE * RIE_SO4 * AB_ref_correct) / (IE_correct * RIE_SO4_correct * ABRefWave)] SO4_48_11000: - num: [*IE, *RIE_SO4, *AB_ref_correct] - den: [*IE_correct, *RIE_SO4_correct, *ABRefWave] + num: [*IE, *RIE_SO4, *AB_ref_correct, *CE] + den: [*IE_correct, *RIE_SO4_correct, *ABRefWave, *CE, *RIE_SO4, *CE_correct]