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Add cell and comment to manually choose data dirs to analize

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florez_j
2025-05-26 13:33:50 +02:00
parent 44a696e52f
commit 59489c611f
1 changed files with 13 additions and 2 deletions
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15
notebooks/demo_acsm_pipeline.ipynb
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@ -71,7 +71,7 @@
"\n", "\n",
"* Create a configuration file (i.e., a `.yaml` file) following the example provided in the input folder.\n", "* Create a configuration file (i.e., a `.yaml` file) following the example provided in the input folder.\n",
"* Set up the input and output directory paths.\n", "* Set up the input and output directory paths.\n",
"* Execute the cell." "* Execute the cell (or Skip it and Execute next cell with manually defined **CAMPAIGN_DATA_FILE** and **APPEND_DATA_DIR**)."
] ]
}, },
{ {
@ -87,6 +87,17 @@
"APPEND_DATA_DIR = os.path.splitext(CAMPAIGN_DATA_FILE)[0]\n" "APPEND_DATA_DIR = os.path.splitext(CAMPAIGN_DATA_FILE)[0]\n"
] ]
}, },
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Uncomment and define the following variables manually to reanalize previous data collections\n",
"#CAMPAIGN_DATA_FILE = '../data/collection_PAY_2024_2025-05-21_2025-05-21.h5'\n",
"#APPEND_DATA_DIR = '../data/collection_PAY_2024_2025-05-21_2025-05-21'"
]
},
{ {
"cell_type": "markdown", "cell_type": "markdown",
"metadata": {}, "metadata": {},
@ -247,7 +258,7 @@
"outputs": [], "outputs": [],
"source": [ "source": [
"#path_to_data_file = '../data/CH0001G.20240201010000.20250519140310.aerosol_mass_spectrometer.chemistry_ACSM.pm1_non_refractory.2mo.1h.CH02L_Aerodyne_ToF-ACSM_017.CH02L_Aerodyne_ToF-ACSM_JFJ.lev2.nas'\n", "#path_to_data_file = '../data/CH0001G.20240201010000.20250519140310.aerosol_mass_spectrometer.chemistry_ACSM.pm1_non_refractory.2mo.1h.CH02L_Aerodyne_ToF-ACSM_017.CH02L_Aerodyne_ToF-ACSM_JFJ.lev2.nas'\n",
"path_to_data_file = '../data/CH0002G.20240201010000.20250521074436.aerosol_mass_spectrometer.chemistry_ACSM.pm1_non_refractory.7w.1h.CH02L_Aerodyne_ToF-ACSM_092.CH02L_Aerodyne_ToF-ACSM_PAY.lev2.nas'\n", "path_to_data_file = '../data/CH0002G.20240201010000.20250526113003.aerosol_mass_spectrometer.chemistry_ACSM.pm1_non_refractory.7w.1h.CH02L_Aerodyne_ToF-ACSM_092.CH02L_Aerodyne_ToF-ACSM_PAY.lev2.nas'\n",
"drop_column_from_nas_file(path_to_data_file, column_to_remove='inletP')" "drop_column_from_nas_file(path_to_data_file, column_to_remove='inletP')"
] ]
}, },